DNA nanotechnology (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "DNA nanotechnology" in English language version.

refsWebsite

Global rank English rank

107nih.gov

4^th place

91doi.org

2^nd place

49harvard.edu

18^th place

17^th place

28semanticscholar.org

11^th place

8^th place

9caltech.edu

887^th place

714^th place

3psu.edu

207^th place

136^th place

3worldcat.org

5^th place

2nature.com

234^th place

397^th place

2web.archive.org

1^st place

1nyu.edu

1,174^th place

773^rd place

1the-scientist.com

7,827^th place

5,905^th place

1arxiv.org

69^th place

59^th place

1handle.net

102^nd place

76^th place

1springer.com

274^th place

309^th place

1books.google.com

3^rd place

1fiercedrugdelivery.com

low place

1mit.edu

415^th place

327^th place

1cam.ac.uk

670^th place

480^th place

1ucl.ac.uk

1,306^th place

885^th place

arxiv.org

Simulation of DNA structures: Doye JP, Ouldridge TE, Louis AA, Romano F, Šulc P, Matek C, et al. (December 2013). "Coarse-graining DNA for simulations of DNA nanotechnology". Physical Chemistry Chemical Physics. 15 (47): 20395–20414. arXiv:1308.3843. Bibcode:2013PCCP...1520395D. doi:10.1039/C3CP53545B. PMID 24121860. S2CID 15324396.

books.google.com

Applications: Rietman EA (2001). Molecular engineering of nanosystems. Springer. pp. 209–212. ISBN 978-0-387-98988-4. Retrieved 17 April 2011.

caltech.edu

resolver.caltech.edu

DNA nanotubes: Rothemund PW, Ekani-Nkodo A, Papadakis N, Kumar A, Fygenson DK, Winfree E (December 2004). "Design and characterization of programmable DNA nanotubes". Journal of the American Chemical Society. 126 (50): 16344–16352. doi:10.1021/ja044319l. PMID 15600335.
DNA nanotubes: Yin P, Hariadi RF, Sahu S, Choi HM, Park SH, Labean TH, Reif JH (August 2008). "Programming DNA tube circumferences". Science. 321 (5890): 824–826. Bibcode:2008Sci...321..824Y. doi:10.1126/science.1157312. PMID 18687961. S2CID 12100380.
Tikhomirov G, Petersen P, Qian L (December 2017). "Fractal assembly of micrometre-scale DNA origami arrays with arbitrary patterns". Nature. 552 (7683): 67–71. Bibcode:2017Natur.552...67T. doi:10.1038/nature24655. PMID 29219965. S2CID 4455780.
Nanoarchitecture: Maune HT, Han SP, Barish RD, Bockrath M, Goddard WA, Rothemund PW, Winfree E (January 2010). "Self-assembly of carbon nanotubes into two-dimensional geometries using DNA origami templates". Nature Nanotechnology. 5 (1): 61–66. Bibcode:2010NatNa...5...61M. doi:10.1038/nnano.2009.311. PMID 19898497.
DNA walkers: Shin JS, Pierce NA (September 2004). "A synthetic DNA walker for molecular transport". Journal of the American Chemical Society. 126 (35): 10834–10835. doi:10.1021/ja047543j. PMID 15339155.
Kinetic assembly: Yin P, Choi HM, Calvert CR, Pierce NA (January 2008). "Programming biomolecular self-assembly pathways". Nature. 451 (7176): 318–322. Bibcode:2008Natur.451..318Y. doi:10.1038/nature06451. PMID 18202654. S2CID 4354536.
Strand displacement cascades: Seelig G, Soloveichik D, Zhang DY, Winfree E (December 2006). "Enzyme-free nucleic acid logic circuits". Science. 314 (5805): 1585–1588. Bibcode:2006Sci...314.1585S. doi:10.1126/science.1132493. PMID 17158324. S2CID 10966324.

rothemundlab.caltech.edu

DNA origami: Rothemund PW (March 2006). "Folding DNA to create nanoscale shapes and patterns" (PDF). Nature. 440 (7082): 297–302. Bibcode:2006Natur.440..297R. doi:10.1038/nature04586. PMID 16541064. S2CID 4316391.

authors.library.caltech.edu

Nanoarchitecture: Cohen JD, Sadowski JP, Dervan PB (22 October 2007). "Addressing single molecules on DNA nanostructures". Angewandte Chemie. 46 (42): 7956–7959. doi:10.1002/anie.200702767. PMID 17763481.

cam.ac.uk

repository.cam.ac.uk

DNA ion channels: Göpfrich K, Zettl T, Meijering AE, Hernández-Ainsa S, Kocabey S, Liedl T, Keyser UF (May 2015). "DNA-Tile Structures Induce Ionic Currents through Lipid Membranes". Nano Letters. 15 (5): 3134–3138. Bibcode:2015NanoL..15.3134G. doi:10.1021/acs.nanolett.5b00189. PMID 25816075.

doi.org

DNA polyhedra: Goodman RP, Schaap IA, Tardin CF, Erben CM, Berry RM, Schmidt CF, Turberfield AJ (December 2005). "Rapid chiral assembly of rigid DNA building blocks for molecular nanofabrication". Science. 310 (5754): 1661–1665. Bibcode:2005Sci...310.1661G. doi:10.1126/science.1120367. PMID 16339440. S2CID 13678773.
Overview: Seeman NC (June 2004). "Nanotechnology and the double helix". Scientific American. 290 (6): 64–75. Bibcode:2004SciAm.290f..64S. doi:10.1038/scientificamerican0604-64. PMID 15195395.
Overview: Seeman NC (2010). "Nanomaterials based on DNA". Annual Review of Biochemistry. 79: 65–87. doi:10.1146/annurev-biochem-060308-102244. PMC 3454582. PMID 20222824.
Overview: Pinheiro AV, Han D, Shih WM, Yan H (November 2011). "Challenges and opportunities for structural DNA nanotechnology". Nature Nanotechnology. 6 (12): 763–772. Bibcode:2011NatNa...6..763P. doi:10.1038/nnano.2011.187. PMC 3334823. PMID 22056726.
DNA origami: Rothemund PW (2006). "Scaffolded DNA origami: from generalized multicrossovers to polygonal networks". In Chen J, Jonoska N, Rozenberg G (eds.). Nanotechnology: science and computation. Natural Computing Series. New York: Springer. pp. 3–21. CiteSeerX 10.1.1.144.1380. doi:10.1007/3-540-30296-4_1. ISBN 978-3-540-30295-7.
History/applications: Service RF (June 2011). "DNA nanotechnology. DNA nanotechnology grows up". Science. 332 (6034): 1140–1, 1143. Bibcode:2011Sci...332.1140S. doi:10.1126/science.332.6034.1140. PMID 21636754.
Yurke, Bernard; Turberfield, Andrew J.; Mills, Allen P.; Simmel, Friedrich C.; Neumann, Jennifer L. (August 2000). "A DNA-fuelled molecular machine made of DNA". Nature. 406 (6796): 605–608. Bibcode:2000Natur.406..605Y. doi:10.1038/35020524. ISSN 1476-4687. S2CID 2064216.
DNA machines: Bath J, Turberfield AJ (May 2007). "DNA nanomachines". Nature Nanotechnology. 2 (5): 275–284. Bibcode:2007NatNa...2..275B. doi:10.1038/nnano.2007.104. PMID 18654284.
Nanoarchitecture: Robinson BH, Seeman NC (August 1987). "The design of a biochip: a self-assembling molecular-scale memory device". Protein Engineering. 1 (4): 295–300. doi:10.1093/protein/1.4.295. PMID 3508280.
Nanoarchitecture: Xiao S, Liu F, Rosen AE, Hainfeld JF, Seeman NC, Musier-Forsyth K, Kiehl RA (August 2002). "Selfassembly of metallic nanoparticle arrays by DNA scaffolding". Journal of Nanoparticle Research. 4 (4): 313–317. Bibcode:2002JNR.....4..313X. doi:10.1023/A:1021145208328. S2CID 2257083.
DNA origami: Rothemund PW (March 2006). "Folding DNA to create nanoscale shapes and patterns" (PDF). Nature. 440 (7082): 297–302. Bibcode:2006Natur.440..297R. doi:10.1038/nature04586. PMID 16541064. S2CID 4316391.
DNA origami: Douglas SM, Dietz H, Liedl T, Högberg B, Graf F, Shih WM (May 2009). "Self-assembly of DNA into nanoscale three-dimensional shapes". Nature. 459 (7245): 414–418. Bibcode:2009Natur.459..414D. doi:10.1038/nature08016. PMC 2688462. PMID 19458720.
Service RF (June 2011). "DNA nanotechnology. DNA nanotechnology grows up". Science. 332 (6034): 1140–1, 1143. Bibcode:2011Sci...332.1140S. doi:10.1126/science.332.6034.1140. PMID 21636754.
History: Seeman NC (June 2010). "Structural DNA nanotechnology: growing along with Nano Letters". Nano Letters. 10 (6): 1971–1978. Bibcode:2010NanoL..10.1971S. doi:10.1021/nl101262u. PMC 2901229. PMID 20486672.
Overview: Mao C (December 2004). "The emergence of complexity: lessons from DNA". PLOS Biology. 2 (12): e431. doi:10.1371/journal.pbio.0020431. PMC 535573. PMID 15597116.
RNA nanotechnology: Chworos A, Severcan I, Koyfman AY, Weinkam P, Oroudjev E, Hansma HG, Jaeger L (December 2004). "Building programmable jigsaw puzzles with RNA". Science. 306 (5704): 2068–2072. Bibcode:2004Sci...306.2068C. doi:10.1126/science.1104686. PMID 15604402. S2CID 9296608.
RNA nanotechnology: Guo P (December 2010). "The emerging field of RNA nanotechnology". Nature Nanotechnology. 5 (12): 833–842. Bibcode:2010NatNa...5..833G. doi:10.1038/nnano.2010.231. PMC 3149862. PMID 21102465.
Dynamic DNA nanotechnology: Zhang DY, Seelig G (February 2011). "Dynamic DNA nanotechnology using strand-displacement reactions". Nature Chemistry. 3 (2): 103–113. Bibcode:2011NatCh...3..103Z. doi:10.1038/nchem.957. PMID 21258382.
Structural DNA nanotechnology: Seeman NC (November 2007). "An overview of structural DNA nanotechnology". Molecular Biotechnology. 37 (3): 246–257. doi:10.1007/s12033-007-0059-4. PMC 3479651. PMID 17952671.
Dynamic DNA nanotechnology: Lu Y, Liu J (December 2006). "Functional DNA nanotechnology: emerging applications of DNAzymes and aptamers". Current Opinion in Biotechnology. 17 (6): 580–588. doi:10.1016/j.copbio.2006.10.004. PMID 17056247.
Simulation of DNA structures: Doye JP, Ouldridge TE, Louis AA, Romano F, Šulc P, Matek C, et al. (December 2013). "Coarse-graining DNA for simulations of DNA nanotechnology". Physical Chemistry Chemical Physics. 15 (47): 20395–20414. arXiv:1308.3843. Bibcode:2013PCCP...1520395D. doi:10.1039/C3CP53545B. PMID 24121860. S2CID 15324396.
Other arrays: Strong M (March 2004). "Protein nanomachines". PLOS Biology. 2 (3): E73. doi:10.1371/journal.pbio.0020073. PMC 368168. PMID 15024422.
Yan H, Park SH, Finkelstein G, Reif JH, LaBean TH (September 2003). "DNA-templated self-assembly of protein arrays and highly conductive nanowires". Science. 301 (5641): 1882–1884. Bibcode:2003Sci...301.1882Y. doi:10.1126/science.1089389. PMID 14512621. S2CID 137635908.
Algorithmic self-assembly: Rothemund PW, Papadakis N, Winfree E (December 2004). "Algorithmic self-assembly of DNA Sierpinski triangles". PLOS Biology. 2 (12): e424. doi:10.1371/journal.pbio.0020424. PMC 534809. PMID 15583715.
DX arrays: Winfree E, Liu F, Wenzler LA, Seeman NC (August 1998). "Design and self-assembly of two-dimensional DNA crystals". Nature. 394 (6693): 539–544. Bibcode:1998Natur.394..539W. doi:10.1038/28998. PMID 9707114. S2CID 4385579.
DX arrays: Liu F, Sha R, Seeman NC (10 February 1999). "Modifying the surface features of two-dimensional DNA crystals". Journal of the American Chemical Society. 121 (5): 917–922. doi:10.1021/ja982824a.
Other arrays: Mao C, Sun W, Seeman NC (16 June 1999). "Designed two-dimensional DNA Holliday junction arrays visualized by atomic force microscopy". Journal of the American Chemical Society. 121 (23): 5437–5443. doi:10.1021/ja9900398.
Other arrays: Constantinou PE, Wang T, Kopatsch J, Israel LB, Zhang X, Ding B, et al. (September 2006). "Double cohesion in structural DNA nanotechnology". Organic & Biomolecular Chemistry. 4 (18): 3414–3419. doi:10.1039/b605212f. PMC 3491902. PMID 17036134.
Other arrays: Mathieu F, Liao S, Kopatsch J, Wang T, Mao C, Seeman NC (April 2005). "Six-helix bundles designed from DNA". Nano Letters. 5 (4): 661–665. Bibcode:2005NanoL...5..661M. doi:10.1021/nl050084f. PMC 3464188. PMID 15826105.
Algorithmic self-assembly: Barish RD, Rothemund PW, Winfree E (December 2005). "Two computational primitives for algorithmic self-assembly: copying and counting". Nano Letters. 5 (12): 2586–2592. Bibcode:2005NanoL...5.2586B. CiteSeerX 10.1.1.155.676. doi:10.1021/nl052038l. PMID 16351220.
Design: Feldkamp U, Niemeyer CM (March 2006). "Rational design of DNA nanoarchitectures". Angewandte Chemie. 45 (12): 1856–1876. doi:10.1002/anie.200502358. PMID 16470892.
DNA nanotubes: Rothemund PW, Ekani-Nkodo A, Papadakis N, Kumar A, Fygenson DK, Winfree E (December 2004). "Design and characterization of programmable DNA nanotubes". Journal of the American Chemical Society. 126 (50): 16344–16352. doi:10.1021/ja044319l. PMID 15600335.
DNA nanotubes: Yin P, Hariadi RF, Sahu S, Choi HM, Park SH, Labean TH, Reif JH (August 2008). "Programming DNA tube circumferences". Science. 321 (5890): 824–826. Bibcode:2008Sci...321..824Y. doi:10.1126/science.1157312. PMID 18687961. S2CID 12100380.
Three-dimensional arrays: Zheng J, Birktoft JJ, Chen Y, Wang T, Sha R, Constantinou PE, et al. (September 2009). "From molecular to macroscopic via the rational design of a self-assembled 3D DNA crystal". Nature. 461 (7260): 74–77. Bibcode:2009Natur.461...74Z. doi:10.1038/nature08274. PMC 2764300. PMID 19727196.
DNA polyhedra: Zhang Y, Seeman NC (1 March 1994). "Construction of a DNA-truncated octahedron". Journal of the American Chemical Society. 116 (5): 1661–1669. doi:10.1021/ja00084a006.
DNA polyhedra: Shih WM, Quispe JD, Joyce GF (February 2004). "A 1.7-kilobase single-stranded DNA that folds into a nanoscale octahedron". Nature. 427 (6975): 618–621. Bibcode:2004Natur.427..618S. doi:10.1038/nature02307. PMID 14961116. S2CID 4419579.
Tikhomirov G, Petersen P, Qian L (December 2017). "Fractal assembly of micrometre-scale DNA origami arrays with arbitrary patterns". Nature. 552 (7683): 67–71. Bibcode:2017Natur.552...67T. doi:10.1038/nature24655. PMID 29219965. S2CID 4455780.
DNA boxes: Andersen ES, Dong M, Nielsen MM, Jahn K, Subramani R, Mamdouh W, et al. (May 2009). "Self-assembly of a nanoscale DNA box with a controllable lid". Nature. 459 (7243): 73–76. Bibcode:2009Natur.459...73A. doi:10.1038/nature07971. hdl:11858/00-001M-0000-0010-9363-9. PMID 19424153. S2CID 4430815.
DNA boxes: Ke Y, Sharma J, Liu M, Jahn K, Liu Y, Yan H (June 2009). "Scaffolded DNA origami of a DNA tetrahedron molecular container". Nano Letters. 9 (6): 2445–2447. Bibcode:2009NanoL...9.2445K. doi:10.1021/nl901165f. PMID 19419184.
Zaborova, O. V.; Voinova, A. D.; Shmykov, B. D.; Sergeyev, V. G. (2021). "Solid Lipid Nanoparticles for the Nucleic Acid Encapsulation". Reviews and Advances in Chemistry. 11 (3–4): 178–188. doi:10.1134/S2079978021030055. ISSN 2634-8276. S2CID 246946068.
Overview: Endo M, Sugiyama H (October 2009). "Chemical approaches to DNA nanotechnology". ChemBioChem. 10 (15): 2420–2443. doi:10.1002/cbic.200900286. PMID 19714700. S2CID 205554125.
Nanoarchitecture: Zheng J, Constantinou PE, Micheel C, Alivisatos AP, Kiehl RA, Seeman NC (July 2006). "Two-dimensional nanoparticle arrays show the organizational power of robust DNA motifs". Nano Letters. 6 (7): 1502–1504. Bibcode:2006NanoL...6.1502Z. doi:10.1021/nl060994c. PMC 3465979. PMID 16834438.
Nanoarchitecture: Park SH, Pistol C, Ahn SJ, Reif JH, Lebeck AR, Dwyer C, LaBean TH (January 2006). "Finite-size, fully addressable DNA tile lattices formed by hierarchical assembly procedures". Angewandte Chemie. 45 (5): 735–739. Bibcode:2006AngCh.118.6759P. doi:10.1002/ange.200690141. PMID 16374784.
Nanoarchitecture: Cohen JD, Sadowski JP, Dervan PB (22 October 2007). "Addressing single molecules on DNA nanostructures". Angewandte Chemie. 46 (42): 7956–7959. doi:10.1002/anie.200702767. PMID 17763481.
Nanoarchitecture: Maune HT, Han SP, Barish RD, Bockrath M, Goddard WA, Rothemund PW, Winfree E (January 2010). "Self-assembly of carbon nanotubes into two-dimensional geometries using DNA origami templates". Nature Nanotechnology. 5 (1): 61–66. Bibcode:2010NatNa...5...61M. doi:10.1038/nnano.2009.311. PMID 19898497.
Nanoarchitecture: Liu J, Geng Y, Pound E, Gyawali S, Ashton JR, Hickey J, et al. (March 2011). "Metallization of branched DNA origami for nanoelectronic circuit fabrication". ACS Nano. 5 (3): 2240–2247. doi:10.1021/nn1035075. PMID 21323323.
Nanoarchitecture: Deng Z, Mao C (August 2004). "Molecular lithography with DNA nanostructures". Angewandte Chemie. 43 (31): 4068–4070. doi:10.1002/anie.200460257. PMID 15300697.
DNA machines: Mao C, Sun W, Shen Z, Seeman NC (January 1999). "A nanomechanical device based on the B-Z transition of DNA". Nature. 397 (6715): 144–146. Bibcode:1999Natur.397..144M. doi:10.1038/16437. PMID 9923675. S2CID 4406177.
DNA machines: Yurke B, Turberfield AJ, Mills AP, Simmel FC, Neumann JL (August 2000). "A DNA-fuelled molecular machine made of DNA". Nature. 406 (6796): 605–608. Bibcode:2000Natur.406..605Y. doi:10.1038/35020524. PMID 10949296. S2CID 2064216.
DNA machines: Yan H, Zhang X, Shen Z, Seeman NC (January 2002). "A robust DNA mechanical device controlled by hybridization topology". Nature. 415 (6867): 62–65. Bibcode:2002Natur.415...62Y. doi:10.1038/415062a. PMID 11780115. S2CID 52801697.
DNA machines: Feng L, Park SH, Reif JH, Yan H (September 2003). "A two-state DNA lattice switched by DNA nanoactuator". Angewandte Chemie. 42 (36): 4342–4346. Bibcode:2003AngCh.115.4478F. doi:10.1002/ange.200351818. PMID 14502706.
DNA machines: Goodman RP, Heilemann M, Doose S, Erben CM, Kapanidis AN, Turberfield AJ (February 2008). "Reconfigurable, braced, three-dimensional DNA nanostructures". Nature Nanotechnology. 3 (2): 93–96. Bibcode:2008NatNa...3...93G. doi:10.1038/nnano.2008.3. PMID 18654468.
Applications: Douglas SM, Bachelet I, Church GM (February 2012). "A logic-gated nanorobot for targeted transport of molecular payloads". Science. 335 (6070): 831–834. Bibcode:2012Sci...335..831D. doi:10.1126/science.1214081. PMID 22344439. S2CID 9866509.
Centola, Mathias; Poppleton, Erik; Ray, Sujay; Centola, Martin; Welty, Robb; Valero, Julián; Walter, Nils G.; Šulc, Petr; Famulok, Michael (2023-10-19). "A rhythmically pulsing leaf-spring DNA-origami nanoengine that drives a passive follower". Nature Nanotechnology: 1–11. doi:10.1038/s41565-023-01516-x. ISSN 1748-3395. PMC 10873200. PMID 37857824.
DNA walkers: Shin JS, Pierce NA (September 2004). "A synthetic DNA walker for molecular transport". Journal of the American Chemical Society. 126 (35): 10834–10835. doi:10.1021/ja047543j. PMID 15339155.
DNA walkers: Sherman WB, Seeman NC (July 2004). "A precisely controlled DNA biped walking device". Nano Letters. 4 (7): 1203–1207. Bibcode:2004NanoL...4.1203S. doi:10.1021/nl049527q.
DNA walkers: Škugor M, Valero J, Murayama K, Centola M, Asanuma H, Famulok M (May 2019). "Orthogonally Photocontrolled Non-Autonomous DNA Walker". Angewandte Chemie. 58 (21): 6948–6951. doi:10.1002/anie.201901272. PMID 30897257. S2CID 85446523.
DNA walkers: Tian Y, He Y, Chen Y, Yin P, Mao C (July 2005). "A DNAzyme that walks processively and autonomously along a one-dimensional track". Angewandte Chemie. 44 (28): 4355–4358. Bibcode:2005AngCh.117.4429T. doi:10.1002/ange.200500703. PMID 15945114.
DNA walkers: Bath J, Green SJ, Turberfield AJ (July 2005). "A free-running DNA motor powered by a nicking enzyme". Angewandte Chemie. 44 (28): 4358–4361. doi:10.1002/anie.200501262. PMID 15959864.
Functional DNA walkers: Lund K, Manzo AJ, Dabby N, Michelotti N, Johnson-Buck A, Nangreave J, et al. (May 2010). "Molecular robots guided by prescriptive landscapes". Nature. 465 (7295): 206–210. Bibcode:2010Natur.465..206L. doi:10.1038/nature09012. PMC 2907518. PMID 20463735.
Functional DNA walkers: Valero J, Pal N, Dhakal S, Walter NG, Famulok M (June 2018). "A bio-hybrid DNA rotor-stator nanoengine that moves along predefined tracks". Nature Nanotechnology. 13 (6): 496–503. Bibcode:2018NatNa..13..496V. doi:10.1038/s41565-018-0109-z. PMC 5994166. PMID 29632399.
Functional DNA walkers: He Y, Liu DR (November 2010). "Autonomous multistep organic synthesis in a single isothermal solution mediated by a DNA walker". Nature Nanotechnology. 5 (11): 778–782. Bibcode:2010NatNa...5..778H. doi:10.1038/nnano.2010.190. PMC 2974042. PMID 20935654.
Pan J, Li F, Cha TG, Chen H, Choi JH (August 2015). "Recent progress on DNA based walkers". Current Opinion in Biotechnology. 34: 56–64. doi:10.1016/j.copbio.2014.11.017. PMID 25498478.
Kinetic assembly: Yin P, Choi HM, Calvert CR, Pierce NA (January 2008). "Programming biomolecular self-assembly pathways". Nature. 451 (7176): 318–322. Bibcode:2008Natur.451..318Y. doi:10.1038/nature06451. PMID 18202654. S2CID 4354536.
Fuzzy and Boolean logic gates based on DNA: Zadegan RM, Jepsen MD, Hildebrandt LL, Birkedal V, Kjems J (April 2015). "Construction of a fuzzy and Boolean logic gates based on DNA". Small. 11 (15): 1811–1817. doi:10.1002/smll.201402755. PMID 25565140.
Strand displacement cascades: Seelig G, Soloveichik D, Zhang DY, Winfree E (December 2006). "Enzyme-free nucleic acid logic circuits". Science. 314 (5805): 1585–1588. Bibcode:2006Sci...314.1585S. doi:10.1126/science.1132493. PMID 17158324. S2CID 10966324.
Strand displacement cascades: Qian L, Winfree E (June 2011). "Scaling up digital circuit computation with DNA strand displacement cascades". Science. 332 (6034): 1196–1201. Bibcode:2011Sci...332.1196Q. doi:10.1126/science.1200520. PMID 21636773. S2CID 10053541.
Zadegan RM, Jepsen MD, Thomsen KE, Okholm AH, Schaffert DH, Andersen ES, et al. (November 2012). "Construction of a 4 zeptoliters switchable 3D DNA box origami". ACS Nano. 6 (11): 10050–10053. doi:10.1021/nn303767b. PMID 23030709.
Applications: Jungmann R, Renner S, Simmel FC (April 2008). "From DNA nanotechnology to synthetic biology". HFSP Journal. 2 (2): 99–109. doi:10.2976/1.2896331. PMC 2645571. PMID 19404476.
Walsh AS, Yin H, Erben CM, Wood MJ, Turberfield AJ (July 2011). "DNA cage delivery to mammalian cells". ACS Nano. 5 (7): 5427–5432. doi:10.1021/nn2005574. PMID 21696187.
Lee H, Lytton-Jean AK, Chen Y, Love KT, Park AI, Karagiannis ED, et al. (June 2012). "Molecularly self-assembled nucleic acid nanoparticles for targeted in vivo siRNA delivery". Nature Nanotechnology. 7 (6): 389–393. Bibcode:2012NatNa...7..389L. doi:10.1038/NNANO.2012.73. PMC 3898745. PMID 22659608.
Kim KR, Kim DR, Lee T, Yhee JY, Kim BS, Kwon IC, Ahn DR (March 2013). "Drug delivery by a self-assembled DNA tetrahedron for overcoming drug resistance in breast cancer cells". Chemical Communications. 49 (20): 2010–2012. doi:10.1039/c3cc38693g. PMID 23380739.
Sundah NR, Ho NR, Lim GS, Natalia A, Ding X, Liu Y, et al. (September 2019). "Barcoded DNA nanostructures for the multiplexed profiling of subcellular protein distribution". Nature Biomedical Engineering. 3 (9): 684–694. doi:10.1038/s41551-019-0417-0. PMID 31285580. S2CID 195825879.
DNA ion channels: Langecker M, Arnaut V, Martin TG, List J, Renner S, Mayer M, et al. (November 2012). "Synthetic lipid membrane channels formed by designed DNA nanostructures". Science. 338 (6109): 932–936. Bibcode:2012Sci...338..932L. doi:10.1126/science.1225624. PMC 3716461. PMID 23161995.
DNA ion channels: Göpfrich K, Li CY, Mames I, Bhamidimarri SP, Ricci M, Yoo J, et al. (July 2016). "Ion Channels Made from a Single Membrane-Spanning DNA Duplex". Nano Letters. 16 (7): 4665–4669. Bibcode:2016NanoL..16.4665G. doi:10.1021/acs.nanolett.6b02039. PMC 4948918. PMID 27324157.
DNA ion channels: Burns JR, Stulz E, Howorka S (June 2013). "Self-assembled DNA nanopores that span lipid bilayers". Nano Letters. 13 (6): 2351–2356. Bibcode:2013NanoL..13.2351B. CiteSeerX 10.1.1.659.7660. doi:10.1021/nl304147f. PMID 23611515.
DNA ion channels: Burns JR, Göpfrich K, Wood JW, Thacker VV, Stulz E, Keyser UF, Howorka S (November 2013). "Lipid-bilayer-spanning DNA nanopores with a bifunctional porphyrin anchor". Angewandte Chemie. 52 (46): 12069–12072. doi:10.1002/anie.201305765. PMC 4016739. PMID 24014236.
DNA ion channels: Seifert A, Göpfrich K, Burns JR, Fertig N, Keyser UF, Howorka S (February 2015). "Bilayer-spanning DNA nanopores with voltage-switching between open and closed state". ACS Nano. 9 (2): 1117–1126. doi:10.1021/nn5039433. PMC 4508203. PMID 25338165.
DNA ion channels: Göpfrich K, Zettl T, Meijering AE, Hernández-Ainsa S, Kocabey S, Liedl T, Keyser UF (May 2015). "DNA-Tile Structures Induce Ionic Currents through Lipid Membranes". Nano Letters. 15 (5): 3134–3138. Bibcode:2015NanoL..15.3134G. doi:10.1021/acs.nanolett.5b00189. PMID 25816075.
DNA ion channels: Burns JR, Seifert A, Fertig N, Howorka S (February 2016). "A biomimetic DNA-based channel for the ligand-controlled transport of charged molecular cargo across a biological membrane". Nature Nanotechnology. 11 (2): 152–156. Bibcode:2016NatNa..11..152B. doi:10.1038/nnano.2015.279. PMID 26751170.
DNA ion channels: Göpfrich K, Li CY, Ricci M, Bhamidimarri SP, Yoo J, Gyenes B, et al. (September 2016). "Large-Conductance Transmembrane Porin Made from DNA Origami". ACS Nano. 10 (9): 8207–8214. doi:10.1021/acsnano.6b03759. PMC 5043419. PMID 27504755.
DNA scramblase: Ohmann A, Li CY, Maffeo C, Al Nahas K, Baumann KN, Göpfrich K, et al. (June 2018). "A synthetic enzyme built from DNA flips 10⁷ lipids per second in biological membranes". Nature Communications. 9 (1): 2426. Bibcode:2018NatCo...9.2426O. doi:10.1038/s41467-018-04821-5. PMC 6013447. PMID 29930243.
Design: Brenneman A, Condon A (25 September 2002). "Strand design for biomolecular computation". Theoretical Computer Science. 287: 39–58. doi:10.1016/S0304-3975(02)00135-4.
Overview: Lin C, Liu Y, Rinker S, Yan H (August 2006). "DNA tile based self-assembly: building complex nanoarchitectures". ChemPhysChem. 7 (8): 1641–1647. doi:10.1002/cphc.200600260. PMID 16832805.
Design: Dirks RM, Lin M, Winfree E, Pierce NA (15 February 2004). "Paradigms for computational nucleic acid design". Nucleic Acids Research. 32 (4): 1392–1403. doi:10.1093/nar/gkh291. PMC 390280. PMID 14990744.
Methods: Ellington A, Pollard JD (1 May 2001). "Synthesis and Purification of Oligonucleotides". Current Protocols in Molecular Biology. 42: 2.11.1–2.11.25. doi:10.1002/0471142727.mb0211s42. ISBN 978-0471142720. PMID 18265179. S2CID 205152989.
Methods: Ellington A, Pollard JD (1 May 2001). "Purification of Oligonucleotides Using Denaturing Polyacrylamide Gel Electrophoresis". Current Protocols in Molecular Biology. 42: Unit2.12. doi:10.1002/0471142727.mb0212s42. ISBN 978-0471142720. PMID 18265180. S2CID 27187583.
Methods: Gallagher SR, Desjardins P (1 July 2011). "Quantitation of nucleic acids and proteins". Current Protocols Essential Laboratory Techniques. Vol. 5. doi:10.1002/9780470089941.et0202s5. ISBN 978-0470089934. S2CID 94329398.
Methods: Chory J, Pollard JD (1 May 2001). "Separation of Small DNA Fragments by Conventional Gel Electrophoresis". Current Protocols in Molecular Biology. 47: Unit2.7. doi:10.1002/0471142727.mb0207s47. ISBN 978-0471142720. PMID 18265187. S2CID 43406338.
Methods: Walter NG (1 February 2003). "Probing RNA Structural Dynamics and Function by Fluorescence Resonance Energy Transfer (FRET)". Current Protocols in Nucleic Acid Chemistry. 11: 11.10.1–11.10.23. doi:10.1002/0471142700.nc1110s11. ISBN 978-0471142706. PMID 18428904. S2CID 9978415.
Methods: Lin C, Ke Y, Chhabra R, Sharma J, Liu Y, Yan H (2011). "Synthesis and Characterization of Self-Assembled DNA Nanostructures". In Zuccheri G, Samorì B (eds.). DNA Nanotechnology. Methods in Molecular Biology. Vol. 749. pp. 1–11. doi:10.1007/978-1-61779-142-0_1. ISBN 978-1-61779-141-3. PMID 21674361.

fiercedrugdelivery.com

Lovy, Howard (5 July 2011). "DNA cages can unleash meds inside cells". fiercedrugdelivery.com. Archived from the original on September 27, 2013. Retrieved 22 September 2013.

handle.net

hdl.handle.net

DNA boxes: Andersen ES, Dong M, Nielsen MM, Jahn K, Subramani R, Mamdouh W, et al. (May 2009). "Self-assembly of a nanoscale DNA box with a controllable lid". Nature. 459 (7243): 73–76. Bibcode:2009Natur.459...73A. doi:10.1038/nature07971. hdl:11858/00-001M-0000-0010-9363-9. PMID 19424153. S2CID 4430815.

harvard.edu

ui.adsabs.harvard.edu

DNA polyhedra: Goodman RP, Schaap IA, Tardin CF, Erben CM, Berry RM, Schmidt CF, Turberfield AJ (December 2005). "Rapid chiral assembly of rigid DNA building blocks for molecular nanofabrication". Science. 310 (5754): 1661–1665. Bibcode:2005Sci...310.1661G. doi:10.1126/science.1120367. PMID 16339440. S2CID 13678773.
Overview: Seeman NC (June 2004). "Nanotechnology and the double helix". Scientific American. 290 (6): 64–75. Bibcode:2004SciAm.290f..64S. doi:10.1038/scientificamerican0604-64. PMID 15195395.
Overview: Pinheiro AV, Han D, Shih WM, Yan H (November 2011). "Challenges and opportunities for structural DNA nanotechnology". Nature Nanotechnology. 6 (12): 763–772. Bibcode:2011NatNa...6..763P. doi:10.1038/nnano.2011.187. PMC 3334823. PMID 22056726.
History/applications: Service RF (June 2011). "DNA nanotechnology. DNA nanotechnology grows up". Science. 332 (6034): 1140–1, 1143. Bibcode:2011Sci...332.1140S. doi:10.1126/science.332.6034.1140. PMID 21636754.
Yurke, Bernard; Turberfield, Andrew J.; Mills, Allen P.; Simmel, Friedrich C.; Neumann, Jennifer L. (August 2000). "A DNA-fuelled molecular machine made of DNA". Nature. 406 (6796): 605–608. Bibcode:2000Natur.406..605Y. doi:10.1038/35020524. ISSN 1476-4687. S2CID 2064216.
DNA machines: Bath J, Turberfield AJ (May 2007). "DNA nanomachines". Nature Nanotechnology. 2 (5): 275–284. Bibcode:2007NatNa...2..275B. doi:10.1038/nnano.2007.104. PMID 18654284.
Nanoarchitecture: Xiao S, Liu F, Rosen AE, Hainfeld JF, Seeman NC, Musier-Forsyth K, Kiehl RA (August 2002). "Selfassembly of metallic nanoparticle arrays by DNA scaffolding". Journal of Nanoparticle Research. 4 (4): 313–317. Bibcode:2002JNR.....4..313X. doi:10.1023/A:1021145208328. S2CID 2257083.
DNA origami: Rothemund PW (March 2006). "Folding DNA to create nanoscale shapes and patterns" (PDF). Nature. 440 (7082): 297–302. Bibcode:2006Natur.440..297R. doi:10.1038/nature04586. PMID 16541064. S2CID 4316391.
DNA origami: Douglas SM, Dietz H, Liedl T, Högberg B, Graf F, Shih WM (May 2009). "Self-assembly of DNA into nanoscale three-dimensional shapes". Nature. 459 (7245): 414–418. Bibcode:2009Natur.459..414D. doi:10.1038/nature08016. PMC 2688462. PMID 19458720.
Service RF (June 2011). "DNA nanotechnology. DNA nanotechnology grows up". Science. 332 (6034): 1140–1, 1143. Bibcode:2011Sci...332.1140S. doi:10.1126/science.332.6034.1140. PMID 21636754.
History: Seeman NC (June 2010). "Structural DNA nanotechnology: growing along with Nano Letters". Nano Letters. 10 (6): 1971–1978. Bibcode:2010NanoL..10.1971S. doi:10.1021/nl101262u. PMC 2901229. PMID 20486672.
RNA nanotechnology: Chworos A, Severcan I, Koyfman AY, Weinkam P, Oroudjev E, Hansma HG, Jaeger L (December 2004). "Building programmable jigsaw puzzles with RNA". Science. 306 (5704): 2068–2072. Bibcode:2004Sci...306.2068C. doi:10.1126/science.1104686. PMID 15604402. S2CID 9296608.
RNA nanotechnology: Guo P (December 2010). "The emerging field of RNA nanotechnology". Nature Nanotechnology. 5 (12): 833–842. Bibcode:2010NatNa...5..833G. doi:10.1038/nnano.2010.231. PMC 3149862. PMID 21102465.
Dynamic DNA nanotechnology: Zhang DY, Seelig G (February 2011). "Dynamic DNA nanotechnology using strand-displacement reactions". Nature Chemistry. 3 (2): 103–113. Bibcode:2011NatCh...3..103Z. doi:10.1038/nchem.957. PMID 21258382.
Simulation of DNA structures: Doye JP, Ouldridge TE, Louis AA, Romano F, Šulc P, Matek C, et al. (December 2013). "Coarse-graining DNA for simulations of DNA nanotechnology". Physical Chemistry Chemical Physics. 15 (47): 20395–20414. arXiv:1308.3843. Bibcode:2013PCCP...1520395D. doi:10.1039/C3CP53545B. PMID 24121860. S2CID 15324396.
Yan H, Park SH, Finkelstein G, Reif JH, LaBean TH (September 2003). "DNA-templated self-assembly of protein arrays and highly conductive nanowires". Science. 301 (5641): 1882–1884. Bibcode:2003Sci...301.1882Y. doi:10.1126/science.1089389. PMID 14512621. S2CID 137635908.
DX arrays: Winfree E, Liu F, Wenzler LA, Seeman NC (August 1998). "Design and self-assembly of two-dimensional DNA crystals". Nature. 394 (6693): 539–544. Bibcode:1998Natur.394..539W. doi:10.1038/28998. PMID 9707114. S2CID 4385579.
Other arrays: Mathieu F, Liao S, Kopatsch J, Wang T, Mao C, Seeman NC (April 2005). "Six-helix bundles designed from DNA". Nano Letters. 5 (4): 661–665. Bibcode:2005NanoL...5..661M. doi:10.1021/nl050084f. PMC 3464188. PMID 15826105.
Algorithmic self-assembly: Barish RD, Rothemund PW, Winfree E (December 2005). "Two computational primitives for algorithmic self-assembly: copying and counting". Nano Letters. 5 (12): 2586–2592. Bibcode:2005NanoL...5.2586B. CiteSeerX 10.1.1.155.676. doi:10.1021/nl052038l. PMID 16351220.
DNA nanotubes: Yin P, Hariadi RF, Sahu S, Choi HM, Park SH, Labean TH, Reif JH (August 2008). "Programming DNA tube circumferences". Science. 321 (5890): 824–826. Bibcode:2008Sci...321..824Y. doi:10.1126/science.1157312. PMID 18687961. S2CID 12100380.
Three-dimensional arrays: Zheng J, Birktoft JJ, Chen Y, Wang T, Sha R, Constantinou PE, et al. (September 2009). "From molecular to macroscopic via the rational design of a self-assembled 3D DNA crystal". Nature. 461 (7260): 74–77. Bibcode:2009Natur.461...74Z. doi:10.1038/nature08274. PMC 2764300. PMID 19727196.
DNA polyhedra: Shih WM, Quispe JD, Joyce GF (February 2004). "A 1.7-kilobase single-stranded DNA that folds into a nanoscale octahedron". Nature. 427 (6975): 618–621. Bibcode:2004Natur.427..618S. doi:10.1038/nature02307. PMID 14961116. S2CID 4419579.
Tikhomirov G, Petersen P, Qian L (December 2017). "Fractal assembly of micrometre-scale DNA origami arrays with arbitrary patterns". Nature. 552 (7683): 67–71. Bibcode:2017Natur.552...67T. doi:10.1038/nature24655. PMID 29219965. S2CID 4455780.
DNA boxes: Andersen ES, Dong M, Nielsen MM, Jahn K, Subramani R, Mamdouh W, et al. (May 2009). "Self-assembly of a nanoscale DNA box with a controllable lid". Nature. 459 (7243): 73–76. Bibcode:2009Natur.459...73A. doi:10.1038/nature07971. hdl:11858/00-001M-0000-0010-9363-9. PMID 19424153. S2CID 4430815.
DNA boxes: Ke Y, Sharma J, Liu M, Jahn K, Liu Y, Yan H (June 2009). "Scaffolded DNA origami of a DNA tetrahedron molecular container". Nano Letters. 9 (6): 2445–2447. Bibcode:2009NanoL...9.2445K. doi:10.1021/nl901165f. PMID 19419184.
Nanoarchitecture: Zheng J, Constantinou PE, Micheel C, Alivisatos AP, Kiehl RA, Seeman NC (July 2006). "Two-dimensional nanoparticle arrays show the organizational power of robust DNA motifs". Nano Letters. 6 (7): 1502–1504. Bibcode:2006NanoL...6.1502Z. doi:10.1021/nl060994c. PMC 3465979. PMID 16834438.
Nanoarchitecture: Park SH, Pistol C, Ahn SJ, Reif JH, Lebeck AR, Dwyer C, LaBean TH (January 2006). "Finite-size, fully addressable DNA tile lattices formed by hierarchical assembly procedures". Angewandte Chemie. 45 (5): 735–739. Bibcode:2006AngCh.118.6759P. doi:10.1002/ange.200690141. PMID 16374784.
Nanoarchitecture: Maune HT, Han SP, Barish RD, Bockrath M, Goddard WA, Rothemund PW, Winfree E (January 2010). "Self-assembly of carbon nanotubes into two-dimensional geometries using DNA origami templates". Nature Nanotechnology. 5 (1): 61–66. Bibcode:2010NatNa...5...61M. doi:10.1038/nnano.2009.311. PMID 19898497.
DNA machines: Mao C, Sun W, Shen Z, Seeman NC (January 1999). "A nanomechanical device based on the B-Z transition of DNA". Nature. 397 (6715): 144–146. Bibcode:1999Natur.397..144M. doi:10.1038/16437. PMID 9923675. S2CID 4406177.
DNA machines: Yurke B, Turberfield AJ, Mills AP, Simmel FC, Neumann JL (August 2000). "A DNA-fuelled molecular machine made of DNA". Nature. 406 (6796): 605–608. Bibcode:2000Natur.406..605Y. doi:10.1038/35020524. PMID 10949296. S2CID 2064216.
DNA machines: Yan H, Zhang X, Shen Z, Seeman NC (January 2002). "A robust DNA mechanical device controlled by hybridization topology". Nature. 415 (6867): 62–65. Bibcode:2002Natur.415...62Y. doi:10.1038/415062a. PMID 11780115. S2CID 52801697.
DNA machines: Feng L, Park SH, Reif JH, Yan H (September 2003). "A two-state DNA lattice switched by DNA nanoactuator". Angewandte Chemie. 42 (36): 4342–4346. Bibcode:2003AngCh.115.4478F. doi:10.1002/ange.200351818. PMID 14502706.
DNA machines: Goodman RP, Heilemann M, Doose S, Erben CM, Kapanidis AN, Turberfield AJ (February 2008). "Reconfigurable, braced, three-dimensional DNA nanostructures". Nature Nanotechnology. 3 (2): 93–96. Bibcode:2008NatNa...3...93G. doi:10.1038/nnano.2008.3. PMID 18654468.
Applications: Douglas SM, Bachelet I, Church GM (February 2012). "A logic-gated nanorobot for targeted transport of molecular payloads". Science. 335 (6070): 831–834. Bibcode:2012Sci...335..831D. doi:10.1126/science.1214081. PMID 22344439. S2CID 9866509.
DNA walkers: Sherman WB, Seeman NC (July 2004). "A precisely controlled DNA biped walking device". Nano Letters. 4 (7): 1203–1207. Bibcode:2004NanoL...4.1203S. doi:10.1021/nl049527q.
DNA walkers: Tian Y, He Y, Chen Y, Yin P, Mao C (July 2005). "A DNAzyme that walks processively and autonomously along a one-dimensional track". Angewandte Chemie. 44 (28): 4355–4358. Bibcode:2005AngCh.117.4429T. doi:10.1002/ange.200500703. PMID 15945114.
Functional DNA walkers: Lund K, Manzo AJ, Dabby N, Michelotti N, Johnson-Buck A, Nangreave J, et al. (May 2010). "Molecular robots guided by prescriptive landscapes". Nature. 465 (7295): 206–210. Bibcode:2010Natur.465..206L. doi:10.1038/nature09012. PMC 2907518. PMID 20463735.
Functional DNA walkers: Valero J, Pal N, Dhakal S, Walter NG, Famulok M (June 2018). "A bio-hybrid DNA rotor-stator nanoengine that moves along predefined tracks". Nature Nanotechnology. 13 (6): 496–503. Bibcode:2018NatNa..13..496V. doi:10.1038/s41565-018-0109-z. PMC 5994166. PMID 29632399.
Functional DNA walkers: He Y, Liu DR (November 2010). "Autonomous multistep organic synthesis in a single isothermal solution mediated by a DNA walker". Nature Nanotechnology. 5 (11): 778–782. Bibcode:2010NatNa...5..778H. doi:10.1038/nnano.2010.190. PMC 2974042. PMID 20935654.
Kinetic assembly: Yin P, Choi HM, Calvert CR, Pierce NA (January 2008). "Programming biomolecular self-assembly pathways". Nature. 451 (7176): 318–322. Bibcode:2008Natur.451..318Y. doi:10.1038/nature06451. PMID 18202654. S2CID 4354536.
Strand displacement cascades: Seelig G, Soloveichik D, Zhang DY, Winfree E (December 2006). "Enzyme-free nucleic acid logic circuits". Science. 314 (5805): 1585–1588. Bibcode:2006Sci...314.1585S. doi:10.1126/science.1132493. PMID 17158324. S2CID 10966324.
Strand displacement cascades: Qian L, Winfree E (June 2011). "Scaling up digital circuit computation with DNA strand displacement cascades". Science. 332 (6034): 1196–1201. Bibcode:2011Sci...332.1196Q. doi:10.1126/science.1200520. PMID 21636773. S2CID 10053541.
Lee H, Lytton-Jean AK, Chen Y, Love KT, Park AI, Karagiannis ED, et al. (June 2012). "Molecularly self-assembled nucleic acid nanoparticles for targeted in vivo siRNA delivery". Nature Nanotechnology. 7 (6): 389–393. Bibcode:2012NatNa...7..389L. doi:10.1038/NNANO.2012.73. PMC 3898745. PMID 22659608.
DNA ion channels: Langecker M, Arnaut V, Martin TG, List J, Renner S, Mayer M, et al. (November 2012). "Synthetic lipid membrane channels formed by designed DNA nanostructures". Science. 338 (6109): 932–936. Bibcode:2012Sci...338..932L. doi:10.1126/science.1225624. PMC 3716461. PMID 23161995.
DNA ion channels: Göpfrich K, Li CY, Mames I, Bhamidimarri SP, Ricci M, Yoo J, et al. (July 2016). "Ion Channels Made from a Single Membrane-Spanning DNA Duplex". Nano Letters. 16 (7): 4665–4669. Bibcode:2016NanoL..16.4665G. doi:10.1021/acs.nanolett.6b02039. PMC 4948918. PMID 27324157.
DNA ion channels: Burns JR, Stulz E, Howorka S (June 2013). "Self-assembled DNA nanopores that span lipid bilayers". Nano Letters. 13 (6): 2351–2356. Bibcode:2013NanoL..13.2351B. CiteSeerX 10.1.1.659.7660. doi:10.1021/nl304147f. PMID 23611515.
DNA ion channels: Göpfrich K, Zettl T, Meijering AE, Hernández-Ainsa S, Kocabey S, Liedl T, Keyser UF (May 2015). "DNA-Tile Structures Induce Ionic Currents through Lipid Membranes". Nano Letters. 15 (5): 3134–3138. Bibcode:2015NanoL..15.3134G. doi:10.1021/acs.nanolett.5b00189. PMID 25816075.
DNA ion channels: Burns JR, Seifert A, Fertig N, Howorka S (February 2016). "A biomimetic DNA-based channel for the ligand-controlled transport of charged molecular cargo across a biological membrane". Nature Nanotechnology. 11 (2): 152–156. Bibcode:2016NatNa..11..152B. doi:10.1038/nnano.2015.279. PMID 26751170.
DNA scramblase: Ohmann A, Li CY, Maffeo C, Al Nahas K, Baumann KN, Göpfrich K, et al. (June 2018). "A synthetic enzyme built from DNA flips 10⁷ lipids per second in biological membranes". Nature Communications. 9 (1): 2426. Bibcode:2018NatCo...9.2426O. doi:10.1038/s41467-018-04821-5. PMC 6013447. PMID 29930243.

mit.edu

web.mit.edu

Trafton, Anne (4 June 2012). "Researchers achieve RNA interference, in a lighter package". MIT News. Retrieved 22 September 2013.

nature.com

Yurke, Bernard; Turberfield, Andrew J.; Mills, Allen P.; Simmel, Friedrich C.; Neumann, Jennifer L. (August 2000). "A DNA-fuelled molecular machine made of DNA". Nature. 406 (6796): 605–608. Bibcode:2000Natur.406..605Y. doi:10.1038/35020524. ISSN 1476-4687. S2CID 2064216.
Centola, Mathias; Poppleton, Erik; Ray, Sujay; Centola, Martin; Welty, Robb; Valero, Julián; Walter, Nils G.; Šulc, Petr; Famulok, Michael (2023-10-19). "A rhythmically pulsing leaf-spring DNA-origami nanoengine that drives a passive follower". Nature Nanotechnology: 1–11. doi:10.1038/s41565-023-01516-x. ISSN 1748-3395. PMC 10873200. PMID 37857824.

nih.gov

pubmed.ncbi.nlm.nih.gov

DNA polyhedra: Goodman RP, Schaap IA, Tardin CF, Erben CM, Berry RM, Schmidt CF, Turberfield AJ (December 2005). "Rapid chiral assembly of rigid DNA building blocks for molecular nanofabrication". Science. 310 (5754): 1661–1665. Bibcode:2005Sci...310.1661G. doi:10.1126/science.1120367. PMID 16339440. S2CID 13678773.
Overview: Seeman NC (June 2004). "Nanotechnology and the double helix". Scientific American. 290 (6): 64–75. Bibcode:2004SciAm.290f..64S. doi:10.1038/scientificamerican0604-64. PMID 15195395.
Overview: Seeman NC (2010). "Nanomaterials based on DNA". Annual Review of Biochemistry. 79: 65–87. doi:10.1146/annurev-biochem-060308-102244. PMC 3454582. PMID 20222824.
Overview: Pinheiro AV, Han D, Shih WM, Yan H (November 2011). "Challenges and opportunities for structural DNA nanotechnology". Nature Nanotechnology. 6 (12): 763–772. Bibcode:2011NatNa...6..763P. doi:10.1038/nnano.2011.187. PMC 3334823. PMID 22056726.
History/applications: Service RF (June 2011). "DNA nanotechnology. DNA nanotechnology grows up". Science. 332 (6034): 1140–1, 1143. Bibcode:2011Sci...332.1140S. doi:10.1126/science.332.6034.1140. PMID 21636754.
DNA machines: Bath J, Turberfield AJ (May 2007). "DNA nanomachines". Nature Nanotechnology. 2 (5): 275–284. Bibcode:2007NatNa...2..275B. doi:10.1038/nnano.2007.104. PMID 18654284.
Nanoarchitecture: Robinson BH, Seeman NC (August 1987). "The design of a biochip: a self-assembling molecular-scale memory device". Protein Engineering. 1 (4): 295–300. doi:10.1093/protein/1.4.295. PMID 3508280.
DNA origami: Rothemund PW (March 2006). "Folding DNA to create nanoscale shapes and patterns" (PDF). Nature. 440 (7082): 297–302. Bibcode:2006Natur.440..297R. doi:10.1038/nature04586. PMID 16541064. S2CID 4316391.
DNA origami: Douglas SM, Dietz H, Liedl T, Högberg B, Graf F, Shih WM (May 2009). "Self-assembly of DNA into nanoscale three-dimensional shapes". Nature. 459 (7245): 414–418. Bibcode:2009Natur.459..414D. doi:10.1038/nature08016. PMC 2688462. PMID 19458720.
Service RF (June 2011). "DNA nanotechnology. DNA nanotechnology grows up". Science. 332 (6034): 1140–1, 1143. Bibcode:2011Sci...332.1140S. doi:10.1126/science.332.6034.1140. PMID 21636754.
History: Seeman NC (June 2010). "Structural DNA nanotechnology: growing along with Nano Letters". Nano Letters. 10 (6): 1971–1978. Bibcode:2010NanoL..10.1971S. doi:10.1021/nl101262u. PMC 2901229. PMID 20486672.
Overview: Mao C (December 2004). "The emergence of complexity: lessons from DNA". PLOS Biology. 2 (12): e431. doi:10.1371/journal.pbio.0020431. PMC 535573. PMID 15597116.
RNA nanotechnology: Chworos A, Severcan I, Koyfman AY, Weinkam P, Oroudjev E, Hansma HG, Jaeger L (December 2004). "Building programmable jigsaw puzzles with RNA". Science. 306 (5704): 2068–2072. Bibcode:2004Sci...306.2068C. doi:10.1126/science.1104686. PMID 15604402. S2CID 9296608.
RNA nanotechnology: Guo P (December 2010). "The emerging field of RNA nanotechnology". Nature Nanotechnology. 5 (12): 833–842. Bibcode:2010NatNa...5..833G. doi:10.1038/nnano.2010.231. PMC 3149862. PMID 21102465.
Dynamic DNA nanotechnology: Zhang DY, Seelig G (February 2011). "Dynamic DNA nanotechnology using strand-displacement reactions". Nature Chemistry. 3 (2): 103–113. Bibcode:2011NatCh...3..103Z. doi:10.1038/nchem.957. PMID 21258382.
Structural DNA nanotechnology: Seeman NC (November 2007). "An overview of structural DNA nanotechnology". Molecular Biotechnology. 37 (3): 246–257. doi:10.1007/s12033-007-0059-4. PMC 3479651. PMID 17952671.
Dynamic DNA nanotechnology: Lu Y, Liu J (December 2006). "Functional DNA nanotechnology: emerging applications of DNAzymes and aptamers". Current Opinion in Biotechnology. 17 (6): 580–588. doi:10.1016/j.copbio.2006.10.004. PMID 17056247.
Simulation of DNA structures: Doye JP, Ouldridge TE, Louis AA, Romano F, Šulc P, Matek C, et al. (December 2013). "Coarse-graining DNA for simulations of DNA nanotechnology". Physical Chemistry Chemical Physics. 15 (47): 20395–20414. arXiv:1308.3843. Bibcode:2013PCCP...1520395D. doi:10.1039/C3CP53545B. PMID 24121860. S2CID 15324396.
Other arrays: Strong M (March 2004). "Protein nanomachines". PLOS Biology. 2 (3): E73. doi:10.1371/journal.pbio.0020073. PMC 368168. PMID 15024422.
Yan H, Park SH, Finkelstein G, Reif JH, LaBean TH (September 2003). "DNA-templated self-assembly of protein arrays and highly conductive nanowires". Science. 301 (5641): 1882–1884. Bibcode:2003Sci...301.1882Y. doi:10.1126/science.1089389. PMID 14512621. S2CID 137635908.
Algorithmic self-assembly: Rothemund PW, Papadakis N, Winfree E (December 2004). "Algorithmic self-assembly of DNA Sierpinski triangles". PLOS Biology. 2 (12): e424. doi:10.1371/journal.pbio.0020424. PMC 534809. PMID 15583715.
DX arrays: Winfree E, Liu F, Wenzler LA, Seeman NC (August 1998). "Design and self-assembly of two-dimensional DNA crystals". Nature. 394 (6693): 539–544. Bibcode:1998Natur.394..539W. doi:10.1038/28998. PMID 9707114. S2CID 4385579.
Other arrays: Constantinou PE, Wang T, Kopatsch J, Israel LB, Zhang X, Ding B, et al. (September 2006). "Double cohesion in structural DNA nanotechnology". Organic & Biomolecular Chemistry. 4 (18): 3414–3419. doi:10.1039/b605212f. PMC 3491902. PMID 17036134.
Other arrays: Mathieu F, Liao S, Kopatsch J, Wang T, Mao C, Seeman NC (April 2005). "Six-helix bundles designed from DNA". Nano Letters. 5 (4): 661–665. Bibcode:2005NanoL...5..661M. doi:10.1021/nl050084f. PMC 3464188. PMID 15826105.
Algorithmic self-assembly: Barish RD, Rothemund PW, Winfree E (December 2005). "Two computational primitives for algorithmic self-assembly: copying and counting". Nano Letters. 5 (12): 2586–2592. Bibcode:2005NanoL...5.2586B. CiteSeerX 10.1.1.155.676. doi:10.1021/nl052038l. PMID 16351220.
Design: Feldkamp U, Niemeyer CM (March 2006). "Rational design of DNA nanoarchitectures". Angewandte Chemie. 45 (12): 1856–1876. doi:10.1002/anie.200502358. PMID 16470892.
DNA nanotubes: Rothemund PW, Ekani-Nkodo A, Papadakis N, Kumar A, Fygenson DK, Winfree E (December 2004). "Design and characterization of programmable DNA nanotubes". Journal of the American Chemical Society. 126 (50): 16344–16352. doi:10.1021/ja044319l. PMID 15600335.
DNA nanotubes: Yin P, Hariadi RF, Sahu S, Choi HM, Park SH, Labean TH, Reif JH (August 2008). "Programming DNA tube circumferences". Science. 321 (5890): 824–826. Bibcode:2008Sci...321..824Y. doi:10.1126/science.1157312. PMID 18687961. S2CID 12100380.
Three-dimensional arrays: Zheng J, Birktoft JJ, Chen Y, Wang T, Sha R, Constantinou PE, et al. (September 2009). "From molecular to macroscopic via the rational design of a self-assembled 3D DNA crystal". Nature. 461 (7260): 74–77. Bibcode:2009Natur.461...74Z. doi:10.1038/nature08274. PMC 2764300. PMID 19727196.
DNA polyhedra: Shih WM, Quispe JD, Joyce GF (February 2004). "A 1.7-kilobase single-stranded DNA that folds into a nanoscale octahedron". Nature. 427 (6975): 618–621. Bibcode:2004Natur.427..618S. doi:10.1038/nature02307. PMID 14961116. S2CID 4419579.
Tikhomirov G, Petersen P, Qian L (December 2017). "Fractal assembly of micrometre-scale DNA origami arrays with arbitrary patterns". Nature. 552 (7683): 67–71. Bibcode:2017Natur.552...67T. doi:10.1038/nature24655. PMID 29219965. S2CID 4455780.
DNA boxes: Andersen ES, Dong M, Nielsen MM, Jahn K, Subramani R, Mamdouh W, et al. (May 2009). "Self-assembly of a nanoscale DNA box with a controllable lid". Nature. 459 (7243): 73–76. Bibcode:2009Natur.459...73A. doi:10.1038/nature07971. hdl:11858/00-001M-0000-0010-9363-9. PMID 19424153. S2CID 4430815.
DNA boxes: Ke Y, Sharma J, Liu M, Jahn K, Liu Y, Yan H (June 2009). "Scaffolded DNA origami of a DNA tetrahedron molecular container". Nano Letters. 9 (6): 2445–2447. Bibcode:2009NanoL...9.2445K. doi:10.1021/nl901165f. PMID 19419184.
Overview: Endo M, Sugiyama H (October 2009). "Chemical approaches to DNA nanotechnology". ChemBioChem. 10 (15): 2420–2443. doi:10.1002/cbic.200900286. PMID 19714700. S2CID 205554125.
Nanoarchitecture: Zheng J, Constantinou PE, Micheel C, Alivisatos AP, Kiehl RA, Seeman NC (July 2006). "Two-dimensional nanoparticle arrays show the organizational power of robust DNA motifs". Nano Letters. 6 (7): 1502–1504. Bibcode:2006NanoL...6.1502Z. doi:10.1021/nl060994c. PMC 3465979. PMID 16834438.
Nanoarchitecture: Park SH, Pistol C, Ahn SJ, Reif JH, Lebeck AR, Dwyer C, LaBean TH (January 2006). "Finite-size, fully addressable DNA tile lattices formed by hierarchical assembly procedures". Angewandte Chemie. 45 (5): 735–739. Bibcode:2006AngCh.118.6759P. doi:10.1002/ange.200690141. PMID 16374784.
Nanoarchitecture: Cohen JD, Sadowski JP, Dervan PB (22 October 2007). "Addressing single molecules on DNA nanostructures". Angewandte Chemie. 46 (42): 7956–7959. doi:10.1002/anie.200702767. PMID 17763481.
Nanoarchitecture: Maune HT, Han SP, Barish RD, Bockrath M, Goddard WA, Rothemund PW, Winfree E (January 2010). "Self-assembly of carbon nanotubes into two-dimensional geometries using DNA origami templates". Nature Nanotechnology. 5 (1): 61–66. Bibcode:2010NatNa...5...61M. doi:10.1038/nnano.2009.311. PMID 19898497.
Nanoarchitecture: Liu J, Geng Y, Pound E, Gyawali S, Ashton JR, Hickey J, et al. (March 2011). "Metallization of branched DNA origami for nanoelectronic circuit fabrication". ACS Nano. 5 (3): 2240–2247. doi:10.1021/nn1035075. PMID 21323323.
Nanoarchitecture: Deng Z, Mao C (August 2004). "Molecular lithography with DNA nanostructures". Angewandte Chemie. 43 (31): 4068–4070. doi:10.1002/anie.200460257. PMID 15300697.
DNA machines: Mao C, Sun W, Shen Z, Seeman NC (January 1999). "A nanomechanical device based on the B-Z transition of DNA". Nature. 397 (6715): 144–146. Bibcode:1999Natur.397..144M. doi:10.1038/16437. PMID 9923675. S2CID 4406177.
DNA machines: Yurke B, Turberfield AJ, Mills AP, Simmel FC, Neumann JL (August 2000). "A DNA-fuelled molecular machine made of DNA". Nature. 406 (6796): 605–608. Bibcode:2000Natur.406..605Y. doi:10.1038/35020524. PMID 10949296. S2CID 2064216.
DNA machines: Yan H, Zhang X, Shen Z, Seeman NC (January 2002). "A robust DNA mechanical device controlled by hybridization topology". Nature. 415 (6867): 62–65. Bibcode:2002Natur.415...62Y. doi:10.1038/415062a. PMID 11780115. S2CID 52801697.
DNA machines: Feng L, Park SH, Reif JH, Yan H (September 2003). "A two-state DNA lattice switched by DNA nanoactuator". Angewandte Chemie. 42 (36): 4342–4346. Bibcode:2003AngCh.115.4478F. doi:10.1002/ange.200351818. PMID 14502706.
DNA machines: Goodman RP, Heilemann M, Doose S, Erben CM, Kapanidis AN, Turberfield AJ (February 2008). "Reconfigurable, braced, three-dimensional DNA nanostructures". Nature Nanotechnology. 3 (2): 93–96. Bibcode:2008NatNa...3...93G. doi:10.1038/nnano.2008.3. PMID 18654468.
Applications: Douglas SM, Bachelet I, Church GM (February 2012). "A logic-gated nanorobot for targeted transport of molecular payloads". Science. 335 (6070): 831–834. Bibcode:2012Sci...335..831D. doi:10.1126/science.1214081. PMID 22344439. S2CID 9866509.
Centola, Mathias; Poppleton, Erik; Ray, Sujay; Centola, Martin; Welty, Robb; Valero, Julián; Walter, Nils G.; Šulc, Petr; Famulok, Michael (2023-10-19). "A rhythmically pulsing leaf-spring DNA-origami nanoengine that drives a passive follower". Nature Nanotechnology: 1–11. doi:10.1038/s41565-023-01516-x. ISSN 1748-3395. PMC 10873200. PMID 37857824.
DNA walkers: Shin JS, Pierce NA (September 2004). "A synthetic DNA walker for molecular transport". Journal of the American Chemical Society. 126 (35): 10834–10835. doi:10.1021/ja047543j. PMID 15339155.
DNA walkers: Škugor M, Valero J, Murayama K, Centola M, Asanuma H, Famulok M (May 2019). "Orthogonally Photocontrolled Non-Autonomous DNA Walker". Angewandte Chemie. 58 (21): 6948–6951. doi:10.1002/anie.201901272. PMID 30897257. S2CID 85446523.
DNA walkers: Tian Y, He Y, Chen Y, Yin P, Mao C (July 2005). "A DNAzyme that walks processively and autonomously along a one-dimensional track". Angewandte Chemie. 44 (28): 4355–4358. Bibcode:2005AngCh.117.4429T. doi:10.1002/ange.200500703. PMID 15945114.
DNA walkers: Bath J, Green SJ, Turberfield AJ (July 2005). "A free-running DNA motor powered by a nicking enzyme". Angewandte Chemie. 44 (28): 4358–4361. doi:10.1002/anie.200501262. PMID 15959864.
Functional DNA walkers: Lund K, Manzo AJ, Dabby N, Michelotti N, Johnson-Buck A, Nangreave J, et al. (May 2010). "Molecular robots guided by prescriptive landscapes". Nature. 465 (7295): 206–210. Bibcode:2010Natur.465..206L. doi:10.1038/nature09012. PMC 2907518. PMID 20463735.
Functional DNA walkers: Valero J, Pal N, Dhakal S, Walter NG, Famulok M (June 2018). "A bio-hybrid DNA rotor-stator nanoengine that moves along predefined tracks". Nature Nanotechnology. 13 (6): 496–503. Bibcode:2018NatNa..13..496V. doi:10.1038/s41565-018-0109-z. PMC 5994166. PMID 29632399.
Functional DNA walkers: He Y, Liu DR (November 2010). "Autonomous multistep organic synthesis in a single isothermal solution mediated by a DNA walker". Nature Nanotechnology. 5 (11): 778–782. Bibcode:2010NatNa...5..778H. doi:10.1038/nnano.2010.190. PMC 2974042. PMID 20935654.
Pan J, Li F, Cha TG, Chen H, Choi JH (August 2015). "Recent progress on DNA based walkers". Current Opinion in Biotechnology. 34: 56–64. doi:10.1016/j.copbio.2014.11.017. PMID 25498478.
Kinetic assembly: Yin P, Choi HM, Calvert CR, Pierce NA (January 2008). "Programming biomolecular self-assembly pathways". Nature. 451 (7176): 318–322. Bibcode:2008Natur.451..318Y. doi:10.1038/nature06451. PMID 18202654. S2CID 4354536.
Fuzzy and Boolean logic gates based on DNA: Zadegan RM, Jepsen MD, Hildebrandt LL, Birkedal V, Kjems J (April 2015). "Construction of a fuzzy and Boolean logic gates based on DNA". Small. 11 (15): 1811–1817. doi:10.1002/smll.201402755. PMID 25565140.
Strand displacement cascades: Seelig G, Soloveichik D, Zhang DY, Winfree E (December 2006). "Enzyme-free nucleic acid logic circuits". Science. 314 (5805): 1585–1588. Bibcode:2006Sci...314.1585S. doi:10.1126/science.1132493. PMID 17158324. S2CID 10966324.
Strand displacement cascades: Qian L, Winfree E (June 2011). "Scaling up digital circuit computation with DNA strand displacement cascades". Science. 332 (6034): 1196–1201. Bibcode:2011Sci...332.1196Q. doi:10.1126/science.1200520. PMID 21636773. S2CID 10053541.
Zadegan RM, Jepsen MD, Thomsen KE, Okholm AH, Schaffert DH, Andersen ES, et al. (November 2012). "Construction of a 4 zeptoliters switchable 3D DNA box origami". ACS Nano. 6 (11): 10050–10053. doi:10.1021/nn303767b. PMID 23030709.
Applications: Jungmann R, Renner S, Simmel FC (April 2008). "From DNA nanotechnology to synthetic biology". HFSP Journal. 2 (2): 99–109. doi:10.2976/1.2896331. PMC 2645571. PMID 19404476.
Walsh AS, Yin H, Erben CM, Wood MJ, Turberfield AJ (July 2011). "DNA cage delivery to mammalian cells". ACS Nano. 5 (7): 5427–5432. doi:10.1021/nn2005574. PMID 21696187.
Lee H, Lytton-Jean AK, Chen Y, Love KT, Park AI, Karagiannis ED, et al. (June 2012). "Molecularly self-assembled nucleic acid nanoparticles for targeted in vivo siRNA delivery". Nature Nanotechnology. 7 (6): 389–393. Bibcode:2012NatNa...7..389L. doi:10.1038/NNANO.2012.73. PMC 3898745. PMID 22659608.
Kim KR, Kim DR, Lee T, Yhee JY, Kim BS, Kwon IC, Ahn DR (March 2013). "Drug delivery by a self-assembled DNA tetrahedron for overcoming drug resistance in breast cancer cells". Chemical Communications. 49 (20): 2010–2012. doi:10.1039/c3cc38693g. PMID 23380739.
Sundah NR, Ho NR, Lim GS, Natalia A, Ding X, Liu Y, et al. (September 2019). "Barcoded DNA nanostructures for the multiplexed profiling of subcellular protein distribution". Nature Biomedical Engineering. 3 (9): 684–694. doi:10.1038/s41551-019-0417-0. PMID 31285580. S2CID 195825879.
DNA ion channels: Langecker M, Arnaut V, Martin TG, List J, Renner S, Mayer M, et al. (November 2012). "Synthetic lipid membrane channels formed by designed DNA nanostructures". Science. 338 (6109): 932–936. Bibcode:2012Sci...338..932L. doi:10.1126/science.1225624. PMC 3716461. PMID 23161995.
DNA ion channels: Göpfrich K, Li CY, Mames I, Bhamidimarri SP, Ricci M, Yoo J, et al. (July 2016). "Ion Channels Made from a Single Membrane-Spanning DNA Duplex". Nano Letters. 16 (7): 4665–4669. Bibcode:2016NanoL..16.4665G. doi:10.1021/acs.nanolett.6b02039. PMC 4948918. PMID 27324157.
DNA ion channels: Burns JR, Stulz E, Howorka S (June 2013). "Self-assembled DNA nanopores that span lipid bilayers". Nano Letters. 13 (6): 2351–2356. Bibcode:2013NanoL..13.2351B. CiteSeerX 10.1.1.659.7660. doi:10.1021/nl304147f. PMID 23611515.
DNA ion channels: Burns JR, Göpfrich K, Wood JW, Thacker VV, Stulz E, Keyser UF, Howorka S (November 2013). "Lipid-bilayer-spanning DNA nanopores with a bifunctional porphyrin anchor". Angewandte Chemie. 52 (46): 12069–12072. doi:10.1002/anie.201305765. PMC 4016739. PMID 24014236.
DNA ion channels: Seifert A, Göpfrich K, Burns JR, Fertig N, Keyser UF, Howorka S (February 2015). "Bilayer-spanning DNA nanopores with voltage-switching between open and closed state". ACS Nano. 9 (2): 1117–1126. doi:10.1021/nn5039433. PMC 4508203. PMID 25338165.
DNA ion channels: Göpfrich K, Zettl T, Meijering AE, Hernández-Ainsa S, Kocabey S, Liedl T, Keyser UF (May 2015). "DNA-Tile Structures Induce Ionic Currents through Lipid Membranes". Nano Letters. 15 (5): 3134–3138. Bibcode:2015NanoL..15.3134G. doi:10.1021/acs.nanolett.5b00189. PMID 25816075.
DNA ion channels: Burns JR, Seifert A, Fertig N, Howorka S (February 2016). "A biomimetic DNA-based channel for the ligand-controlled transport of charged molecular cargo across a biological membrane". Nature Nanotechnology. 11 (2): 152–156. Bibcode:2016NatNa..11..152B. doi:10.1038/nnano.2015.279. PMID 26751170.
DNA ion channels: Göpfrich K, Li CY, Ricci M, Bhamidimarri SP, Yoo J, Gyenes B, et al. (September 2016). "Large-Conductance Transmembrane Porin Made from DNA Origami". ACS Nano. 10 (9): 8207–8214. doi:10.1021/acsnano.6b03759. PMC 5043419. PMID 27504755.
DNA scramblase: Ohmann A, Li CY, Maffeo C, Al Nahas K, Baumann KN, Göpfrich K, et al. (June 2018). "A synthetic enzyme built from DNA flips 10⁷ lipids per second in biological membranes". Nature Communications. 9 (1): 2426. Bibcode:2018NatCo...9.2426O. doi:10.1038/s41467-018-04821-5. PMC 6013447. PMID 29930243.
Overview: Lin C, Liu Y, Rinker S, Yan H (August 2006). "DNA tile based self-assembly: building complex nanoarchitectures". ChemPhysChem. 7 (8): 1641–1647. doi:10.1002/cphc.200600260. PMID 16832805.
Design: Dirks RM, Lin M, Winfree E, Pierce NA (15 February 2004). "Paradigms for computational nucleic acid design". Nucleic Acids Research. 32 (4): 1392–1403. doi:10.1093/nar/gkh291. PMC 390280. PMID 14990744.
Methods: Ellington A, Pollard JD (1 May 2001). "Synthesis and Purification of Oligonucleotides". Current Protocols in Molecular Biology. 42: 2.11.1–2.11.25. doi:10.1002/0471142727.mb0211s42. ISBN 978-0471142720. PMID 18265179. S2CID 205152989.
Methods: Ellington A, Pollard JD (1 May 2001). "Purification of Oligonucleotides Using Denaturing Polyacrylamide Gel Electrophoresis". Current Protocols in Molecular Biology. 42: Unit2.12. doi:10.1002/0471142727.mb0212s42. ISBN 978-0471142720. PMID 18265180. S2CID 27187583.
Methods: Chory J, Pollard JD (1 May 2001). "Separation of Small DNA Fragments by Conventional Gel Electrophoresis". Current Protocols in Molecular Biology. 47: Unit2.7. doi:10.1002/0471142727.mb0207s47. ISBN 978-0471142720. PMID 18265187. S2CID 43406338.
Methods: Walter NG (1 February 2003). "Probing RNA Structural Dynamics and Function by Fluorescence Resonance Energy Transfer (FRET)". Current Protocols in Nucleic Acid Chemistry. 11: 11.10.1–11.10.23. doi:10.1002/0471142700.nc1110s11. ISBN 978-0471142706. PMID 18428904. S2CID 9978415.
Methods: Lin C, Ke Y, Chhabra R, Sharma J, Liu Y, Yan H (2011). "Synthesis and Characterization of Self-Assembled DNA Nanostructures". In Zuccheri G, Samorì B (eds.). DNA Nanotechnology. Methods in Molecular Biology. Vol. 749. pp. 1–11. doi:10.1007/978-1-61779-142-0_1. ISBN 978-1-61779-141-3. PMID 21674361.

ncbi.nlm.nih.gov

Overview: Seeman NC (2010). "Nanomaterials based on DNA". Annual Review of Biochemistry. 79: 65–87. doi:10.1146/annurev-biochem-060308-102244. PMC 3454582. PMID 20222824.
Overview: Pinheiro AV, Han D, Shih WM, Yan H (November 2011). "Challenges and opportunities for structural DNA nanotechnology". Nature Nanotechnology. 6 (12): 763–772. Bibcode:2011NatNa...6..763P. doi:10.1038/nnano.2011.187. PMC 3334823. PMID 22056726.
DNA origami: Douglas SM, Dietz H, Liedl T, Högberg B, Graf F, Shih WM (May 2009). "Self-assembly of DNA into nanoscale three-dimensional shapes". Nature. 459 (7245): 414–418. Bibcode:2009Natur.459..414D. doi:10.1038/nature08016. PMC 2688462. PMID 19458720.
History: Seeman NC (June 2010). "Structural DNA nanotechnology: growing along with Nano Letters". Nano Letters. 10 (6): 1971–1978. Bibcode:2010NanoL..10.1971S. doi:10.1021/nl101262u. PMC 2901229. PMID 20486672.
Overview: Mao C (December 2004). "The emergence of complexity: lessons from DNA". PLOS Biology. 2 (12): e431. doi:10.1371/journal.pbio.0020431. PMC 535573. PMID 15597116.
RNA nanotechnology: Guo P (December 2010). "The emerging field of RNA nanotechnology". Nature Nanotechnology. 5 (12): 833–842. Bibcode:2010NatNa...5..833G. doi:10.1038/nnano.2010.231. PMC 3149862. PMID 21102465.
Structural DNA nanotechnology: Seeman NC (November 2007). "An overview of structural DNA nanotechnology". Molecular Biotechnology. 37 (3): 246–257. doi:10.1007/s12033-007-0059-4. PMC 3479651. PMID 17952671.
Other arrays: Strong M (March 2004). "Protein nanomachines". PLOS Biology. 2 (3): E73. doi:10.1371/journal.pbio.0020073. PMC 368168. PMID 15024422.
Algorithmic self-assembly: Rothemund PW, Papadakis N, Winfree E (December 2004). "Algorithmic self-assembly of DNA Sierpinski triangles". PLOS Biology. 2 (12): e424. doi:10.1371/journal.pbio.0020424. PMC 534809. PMID 15583715.
Other arrays: Constantinou PE, Wang T, Kopatsch J, Israel LB, Zhang X, Ding B, et al. (September 2006). "Double cohesion in structural DNA nanotechnology". Organic & Biomolecular Chemistry. 4 (18): 3414–3419. doi:10.1039/b605212f. PMC 3491902. PMID 17036134.
Other arrays: Mathieu F, Liao S, Kopatsch J, Wang T, Mao C, Seeman NC (April 2005). "Six-helix bundles designed from DNA". Nano Letters. 5 (4): 661–665. Bibcode:2005NanoL...5..661M. doi:10.1021/nl050084f. PMC 3464188. PMID 15826105.
Three-dimensional arrays: Zheng J, Birktoft JJ, Chen Y, Wang T, Sha R, Constantinou PE, et al. (September 2009). "From molecular to macroscopic via the rational design of a self-assembled 3D DNA crystal". Nature. 461 (7260): 74–77. Bibcode:2009Natur.461...74Z. doi:10.1038/nature08274. PMC 2764300. PMID 19727196.
Nanoarchitecture: Zheng J, Constantinou PE, Micheel C, Alivisatos AP, Kiehl RA, Seeman NC (July 2006). "Two-dimensional nanoparticle arrays show the organizational power of robust DNA motifs". Nano Letters. 6 (7): 1502–1504. Bibcode:2006NanoL...6.1502Z. doi:10.1021/nl060994c. PMC 3465979. PMID 16834438.
Centola, Mathias; Poppleton, Erik; Ray, Sujay; Centola, Martin; Welty, Robb; Valero, Julián; Walter, Nils G.; Šulc, Petr; Famulok, Michael (2023-10-19). "A rhythmically pulsing leaf-spring DNA-origami nanoengine that drives a passive follower". Nature Nanotechnology: 1–11. doi:10.1038/s41565-023-01516-x. ISSN 1748-3395. PMC 10873200. PMID 37857824.
Functional DNA walkers: Lund K, Manzo AJ, Dabby N, Michelotti N, Johnson-Buck A, Nangreave J, et al. (May 2010). "Molecular robots guided by prescriptive landscapes". Nature. 465 (7295): 206–210. Bibcode:2010Natur.465..206L. doi:10.1038/nature09012. PMC 2907518. PMID 20463735.
Functional DNA walkers: Valero J, Pal N, Dhakal S, Walter NG, Famulok M (June 2018). "A bio-hybrid DNA rotor-stator nanoengine that moves along predefined tracks". Nature Nanotechnology. 13 (6): 496–503. Bibcode:2018NatNa..13..496V. doi:10.1038/s41565-018-0109-z. PMC 5994166. PMID 29632399.
Functional DNA walkers: He Y, Liu DR (November 2010). "Autonomous multistep organic synthesis in a single isothermal solution mediated by a DNA walker". Nature Nanotechnology. 5 (11): 778–782. Bibcode:2010NatNa...5..778H. doi:10.1038/nnano.2010.190. PMC 2974042. PMID 20935654.
Applications: Jungmann R, Renner S, Simmel FC (April 2008). "From DNA nanotechnology to synthetic biology". HFSP Journal. 2 (2): 99–109. doi:10.2976/1.2896331. PMC 2645571. PMID 19404476.
Lee H, Lytton-Jean AK, Chen Y, Love KT, Park AI, Karagiannis ED, et al. (June 2012). "Molecularly self-assembled nucleic acid nanoparticles for targeted in vivo siRNA delivery". Nature Nanotechnology. 7 (6): 389–393. Bibcode:2012NatNa...7..389L. doi:10.1038/NNANO.2012.73. PMC 3898745. PMID 22659608.
DNA ion channels: Langecker M, Arnaut V, Martin TG, List J, Renner S, Mayer M, et al. (November 2012). "Synthetic lipid membrane channels formed by designed DNA nanostructures". Science. 338 (6109): 932–936. Bibcode:2012Sci...338..932L. doi:10.1126/science.1225624. PMC 3716461. PMID 23161995.
DNA ion channels: Göpfrich K, Li CY, Mames I, Bhamidimarri SP, Ricci M, Yoo J, et al. (July 2016). "Ion Channels Made from a Single Membrane-Spanning DNA Duplex". Nano Letters. 16 (7): 4665–4669. Bibcode:2016NanoL..16.4665G. doi:10.1021/acs.nanolett.6b02039. PMC 4948918. PMID 27324157.
DNA ion channels: Burns JR, Göpfrich K, Wood JW, Thacker VV, Stulz E, Keyser UF, Howorka S (November 2013). "Lipid-bilayer-spanning DNA nanopores with a bifunctional porphyrin anchor". Angewandte Chemie. 52 (46): 12069–12072. doi:10.1002/anie.201305765. PMC 4016739. PMID 24014236.
DNA ion channels: Seifert A, Göpfrich K, Burns JR, Fertig N, Keyser UF, Howorka S (February 2015). "Bilayer-spanning DNA nanopores with voltage-switching between open and closed state". ACS Nano. 9 (2): 1117–1126. doi:10.1021/nn5039433. PMC 4508203. PMID 25338165.
DNA ion channels: Göpfrich K, Li CY, Ricci M, Bhamidimarri SP, Yoo J, Gyenes B, et al. (September 2016). "Large-Conductance Transmembrane Porin Made from DNA Origami". ACS Nano. 10 (9): 8207–8214. doi:10.1021/acsnano.6b03759. PMC 5043419. PMID 27504755.
DNA scramblase: Ohmann A, Li CY, Maffeo C, Al Nahas K, Baumann KN, Göpfrich K, et al. (June 2018). "A synthetic enzyme built from DNA flips 10⁷ lipids per second in biological membranes". Nature Communications. 9 (1): 2426. Bibcode:2018NatCo...9.2426O. doi:10.1038/s41467-018-04821-5. PMC 6013447. PMID 29930243.
Design: Dirks RM, Lin M, Winfree E, Pierce NA (15 February 2004). "Paradigms for computational nucleic acid design". Nucleic Acids Research. 32 (4): 1392–1403. doi:10.1093/nar/gkh291. PMC 390280. PMID 14990744.

nyu.edu

seemanlab4.chem.nyu.edu

History: See "Current crystallization protocol". Nadrian Seeman Lab. for a statement of the problem, and "DNA cages containing oriented guests". Nadrian Seeman Laboratory. for the proposed solution.

psu.edu

citeseerx.ist.psu.edu

DNA origami: Rothemund PW (2006). "Scaffolded DNA origami: from generalized multicrossovers to polygonal networks". In Chen J, Jonoska N, Rozenberg G (eds.). Nanotechnology: science and computation. Natural Computing Series. New York: Springer. pp. 3–21. CiteSeerX 10.1.1.144.1380. doi:10.1007/3-540-30296-4_1. ISBN 978-3-540-30295-7.
Algorithmic self-assembly: Barish RD, Rothemund PW, Winfree E (December 2005). "Two computational primitives for algorithmic self-assembly: copying and counting". Nano Letters. 5 (12): 2586–2592. Bibcode:2005NanoL...5.2586B. CiteSeerX 10.1.1.155.676. doi:10.1021/nl052038l. PMID 16351220.
DNA ion channels: Burns JR, Stulz E, Howorka S (June 2013). "Self-assembled DNA nanopores that span lipid bilayers". Nano Letters. 13 (6): 2351–2356. Bibcode:2013NanoL..13.2351B. CiteSeerX 10.1.1.659.7660. doi:10.1021/nl304147f. PMID 23611515.

semanticscholar.org

api.semanticscholar.org

DNA polyhedra: Goodman RP, Schaap IA, Tardin CF, Erben CM, Berry RM, Schmidt CF, Turberfield AJ (December 2005). "Rapid chiral assembly of rigid DNA building blocks for molecular nanofabrication". Science. 310 (5754): 1661–1665. Bibcode:2005Sci...310.1661G. doi:10.1126/science.1120367. PMID 16339440. S2CID 13678773.
Yurke, Bernard; Turberfield, Andrew J.; Mills, Allen P.; Simmel, Friedrich C.; Neumann, Jennifer L. (August 2000). "A DNA-fuelled molecular machine made of DNA". Nature. 406 (6796): 605–608. Bibcode:2000Natur.406..605Y. doi:10.1038/35020524. ISSN 1476-4687. S2CID 2064216.
Nanoarchitecture: Xiao S, Liu F, Rosen AE, Hainfeld JF, Seeman NC, Musier-Forsyth K, Kiehl RA (August 2002). "Selfassembly of metallic nanoparticle arrays by DNA scaffolding". Journal of Nanoparticle Research. 4 (4): 313–317. Bibcode:2002JNR.....4..313X. doi:10.1023/A:1021145208328. S2CID 2257083.
DNA origami: Rothemund PW (March 2006). "Folding DNA to create nanoscale shapes and patterns" (PDF). Nature. 440 (7082): 297–302. Bibcode:2006Natur.440..297R. doi:10.1038/nature04586. PMID 16541064. S2CID 4316391.
RNA nanotechnology: Chworos A, Severcan I, Koyfman AY, Weinkam P, Oroudjev E, Hansma HG, Jaeger L (December 2004). "Building programmable jigsaw puzzles with RNA". Science. 306 (5704): 2068–2072. Bibcode:2004Sci...306.2068C. doi:10.1126/science.1104686. PMID 15604402. S2CID 9296608.
Simulation of DNA structures: Doye JP, Ouldridge TE, Louis AA, Romano F, Šulc P, Matek C, et al. (December 2013). "Coarse-graining DNA for simulations of DNA nanotechnology". Physical Chemistry Chemical Physics. 15 (47): 20395–20414. arXiv:1308.3843. Bibcode:2013PCCP...1520395D. doi:10.1039/C3CP53545B. PMID 24121860. S2CID 15324396.
Yan H, Park SH, Finkelstein G, Reif JH, LaBean TH (September 2003). "DNA-templated self-assembly of protein arrays and highly conductive nanowires". Science. 301 (5641): 1882–1884. Bibcode:2003Sci...301.1882Y. doi:10.1126/science.1089389. PMID 14512621. S2CID 137635908.
DX arrays: Winfree E, Liu F, Wenzler LA, Seeman NC (August 1998). "Design and self-assembly of two-dimensional DNA crystals". Nature. 394 (6693): 539–544. Bibcode:1998Natur.394..539W. doi:10.1038/28998. PMID 9707114. S2CID 4385579.
DNA nanotubes: Yin P, Hariadi RF, Sahu S, Choi HM, Park SH, Labean TH, Reif JH (August 2008). "Programming DNA tube circumferences". Science. 321 (5890): 824–826. Bibcode:2008Sci...321..824Y. doi:10.1126/science.1157312. PMID 18687961. S2CID 12100380.
DNA polyhedra: Shih WM, Quispe JD, Joyce GF (February 2004). "A 1.7-kilobase single-stranded DNA that folds into a nanoscale octahedron". Nature. 427 (6975): 618–621. Bibcode:2004Natur.427..618S. doi:10.1038/nature02307. PMID 14961116. S2CID 4419579.
Tikhomirov G, Petersen P, Qian L (December 2017). "Fractal assembly of micrometre-scale DNA origami arrays with arbitrary patterns". Nature. 552 (7683): 67–71. Bibcode:2017Natur.552...67T. doi:10.1038/nature24655. PMID 29219965. S2CID 4455780.
DNA boxes: Andersen ES, Dong M, Nielsen MM, Jahn K, Subramani R, Mamdouh W, et al. (May 2009). "Self-assembly of a nanoscale DNA box with a controllable lid". Nature. 459 (7243): 73–76. Bibcode:2009Natur.459...73A. doi:10.1038/nature07971. hdl:11858/00-001M-0000-0010-9363-9. PMID 19424153. S2CID 4430815.
Zaborova, O. V.; Voinova, A. D.; Shmykov, B. D.; Sergeyev, V. G. (2021). "Solid Lipid Nanoparticles for the Nucleic Acid Encapsulation". Reviews and Advances in Chemistry. 11 (3–4): 178–188. doi:10.1134/S2079978021030055. ISSN 2634-8276. S2CID 246946068.
Overview: Endo M, Sugiyama H (October 2009). "Chemical approaches to DNA nanotechnology". ChemBioChem. 10 (15): 2420–2443. doi:10.1002/cbic.200900286. PMID 19714700. S2CID 205554125.
DNA machines: Mao C, Sun W, Shen Z, Seeman NC (January 1999). "A nanomechanical device based on the B-Z transition of DNA". Nature. 397 (6715): 144–146. Bibcode:1999Natur.397..144M. doi:10.1038/16437. PMID 9923675. S2CID 4406177.
DNA machines: Yurke B, Turberfield AJ, Mills AP, Simmel FC, Neumann JL (August 2000). "A DNA-fuelled molecular machine made of DNA". Nature. 406 (6796): 605–608. Bibcode:2000Natur.406..605Y. doi:10.1038/35020524. PMID 10949296. S2CID 2064216.
DNA machines: Yan H, Zhang X, Shen Z, Seeman NC (January 2002). "A robust DNA mechanical device controlled by hybridization topology". Nature. 415 (6867): 62–65. Bibcode:2002Natur.415...62Y. doi:10.1038/415062a. PMID 11780115. S2CID 52801697.
Applications: Douglas SM, Bachelet I, Church GM (February 2012). "A logic-gated nanorobot for targeted transport of molecular payloads". Science. 335 (6070): 831–834. Bibcode:2012Sci...335..831D. doi:10.1126/science.1214081. PMID 22344439. S2CID 9866509.
DNA walkers: Škugor M, Valero J, Murayama K, Centola M, Asanuma H, Famulok M (May 2019). "Orthogonally Photocontrolled Non-Autonomous DNA Walker". Angewandte Chemie. 58 (21): 6948–6951. doi:10.1002/anie.201901272. PMID 30897257. S2CID 85446523.
Kinetic assembly: Yin P, Choi HM, Calvert CR, Pierce NA (January 2008). "Programming biomolecular self-assembly pathways". Nature. 451 (7176): 318–322. Bibcode:2008Natur.451..318Y. doi:10.1038/nature06451. PMID 18202654. S2CID 4354536.
Strand displacement cascades: Seelig G, Soloveichik D, Zhang DY, Winfree E (December 2006). "Enzyme-free nucleic acid logic circuits". Science. 314 (5805): 1585–1588. Bibcode:2006Sci...314.1585S. doi:10.1126/science.1132493. PMID 17158324. S2CID 10966324.
Strand displacement cascades: Qian L, Winfree E (June 2011). "Scaling up digital circuit computation with DNA strand displacement cascades". Science. 332 (6034): 1196–1201. Bibcode:2011Sci...332.1196Q. doi:10.1126/science.1200520. PMID 21636773. S2CID 10053541.
Sundah NR, Ho NR, Lim GS, Natalia A, Ding X, Liu Y, et al. (September 2019). "Barcoded DNA nanostructures for the multiplexed profiling of subcellular protein distribution". Nature Biomedical Engineering. 3 (9): 684–694. doi:10.1038/s41551-019-0417-0. PMID 31285580. S2CID 195825879.
Methods: Ellington A, Pollard JD (1 May 2001). "Synthesis and Purification of Oligonucleotides". Current Protocols in Molecular Biology. 42: 2.11.1–2.11.25. doi:10.1002/0471142727.mb0211s42. ISBN 978-0471142720. PMID 18265179. S2CID 205152989.
Methods: Ellington A, Pollard JD (1 May 2001). "Purification of Oligonucleotides Using Denaturing Polyacrylamide Gel Electrophoresis". Current Protocols in Molecular Biology. 42: Unit2.12. doi:10.1002/0471142727.mb0212s42. ISBN 978-0471142720. PMID 18265180. S2CID 27187583.
Methods: Gallagher SR, Desjardins P (1 July 2011). "Quantitation of nucleic acids and proteins". Current Protocols Essential Laboratory Techniques. Vol. 5. doi:10.1002/9780470089941.et0202s5. ISBN 978-0470089934. S2CID 94329398.
Methods: Chory J, Pollard JD (1 May 2001). "Separation of Small DNA Fragments by Conventional Gel Electrophoresis". Current Protocols in Molecular Biology. 47: Unit2.7. doi:10.1002/0471142727.mb0207s47. ISBN 978-0471142720. PMID 18265187. S2CID 43406338.
Methods: Walter NG (1 February 2003). "Probing RNA Structural Dynamics and Function by Fluorescence Resonance Energy Transfer (FRET)". Current Protocols in Nucleic Acid Chemistry. 11: 11.10.1–11.10.23. doi:10.1002/0471142700.nc1110s11. ISBN 978-0471142706. PMID 18428904. S2CID 9978415.

springer.com

link.springer.com

Zaborova, O. V.; Voinova, A. D.; Shmykov, B. D.; Sergeyev, V. G. (2021). "Solid Lipid Nanoparticles for the Nucleic Acid Encapsulation". Reviews and Advances in Chemistry. 11 (3–4): 178–188. doi:10.1134/S2079978021030055. ISSN 2634-8276. S2CID 246946068.

the-scientist.com

History: Hopkin K (August 2011). "Profile: 3-D seer". The Scientist. Archived from the original on 10 October 2011. Retrieved 8 August 2011.

ucl.ac.uk

discovery.ucl.ac.uk

DNA ion channels: Burns JR, Seifert A, Fertig N, Howorka S (February 2016). "A biomimetic DNA-based channel for the ligand-controlled transport of charged molecular cargo across a biological membrane". Nature Nanotechnology. 11 (2): 152–156. Bibcode:2016NatNa..11..152B. doi:10.1038/nnano.2015.279. PMID 26751170.

web.archive.org

History: Hopkin K (August 2011). "Profile: 3-D seer". The Scientist. Archived from the original on 10 October 2011. Retrieved 8 August 2011.
Lovy, Howard (5 July 2011). "DNA cages can unleash meds inside cells". fiercedrugdelivery.com. Archived from the original on September 27, 2013. Retrieved 22 September 2013.

worldcat.org

search.worldcat.org

Yurke, Bernard; Turberfield, Andrew J.; Mills, Allen P.; Simmel, Friedrich C.; Neumann, Jennifer L. (August 2000). "A DNA-fuelled molecular machine made of DNA". Nature. 406 (6796): 605–608. Bibcode:2000Natur.406..605Y. doi:10.1038/35020524. ISSN 1476-4687. S2CID 2064216.
Zaborova, O. V.; Voinova, A. D.; Shmykov, B. D.; Sergeyev, V. G. (2021). "Solid Lipid Nanoparticles for the Nucleic Acid Encapsulation". Reviews and Advances in Chemistry. 11 (3–4): 178–188. doi:10.1134/S2079978021030055. ISSN 2634-8276. S2CID 246946068.
Centola, Mathias; Poppleton, Erik; Ray, Sujay; Centola, Martin; Welty, Robb; Valero, Julián; Walter, Nils G.; Šulc, Petr; Famulok, Michael (2023-10-19). "A rhythmically pulsing leaf-spring DNA-origami nanoengine that drives a passive follower". Nature Nanotechnology: 1–11. doi:10.1038/s41565-023-01516-x. ISSN 1748-3395. PMC 10873200. PMID 37857824.