DNA sequencing theory (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "DNA sequencing theory" in English language version.

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doi.org

Stevens WL (1939). "Solution to a Geometrical Problem in Probability". Annals of Eugenics. 9 (4): 315–320. doi:10.1111/j.1469-1809.1939.tb02216.x.
Clarke L, Carbon J (1976). "A colony bank containing synthetic Col-El hybrid plasmids representative of the entire E. coli genome". Cell. 9 (1): 91–99. doi:10.1016/0092-8674(76)90055-6. PMID 788919. S2CID 2535372.
Lander ES, Waterman MS (1988). "Genomic mapping by fingerprinting random clones: a mathematical analysis". Genomics. 2 (3): 231–239. doi:10.1016/0888-7543(88)90007-9. PMID 3294162.
Fleischmann RD; et al. (1995). "Whole-genome random sequencing and assembly of haemophilus influenzae Rd". Science. 269 (5223): 496–512. Bibcode:1995Sci...269..496F. doi:10.1126/science.7542800. PMID 7542800.
Roach JC (1995). "Random subcloning". Genome Research. 5 (5): 464–473. doi:10.1101/gr.5.5.464. PMID 8808467.
Wendl MC, Waterston RH (2002). "Generalized gap model for bacterial artificial chromosome clone fingerprint mapping and shotgun sequencing". Genome Research. 12 (12): 1943–1949. doi:10.1101/gr.655102. PMC 187573. PMID 12466299.
Arratia R; et al. (1991). "Genomic mapping by anchoring random clones: a mathematical analysis". Genomics. 11 (4): 806–827. CiteSeerX 10.1.1.80.8788. doi:10.1016/0888-7543(91)90004-X. PMID 1783390.
Port E; et al. (1995). "Genomic mapping by end-characterized random clones: a mathematical analysis". Genomics. 26 (1): 84–100. CiteSeerX 10.1.1.74.4380. doi:10.1016/0888-7543(95)80086-2. PMID 7782090.
Zhang MQ, Marr TG (1993). "Genome mapping by nonrandom anchoring: a discrete theoretical analysis". Proceedings of the National Academy of Sciences. 90 (2): 600–604. Bibcode:1993PNAS...90..600Z. doi:10.1073/pnas.90.2.600. PMC 45711. PMID 8421694.
Roach JC; et al. (2000). "Parking strategies for genome sequencing". Genome Research. 10 (7): 1020–1030. doi:10.1101/gr.10.7.1020. PMC 310895. PMID 10899151.
Roach JC, Boysen C, Wang K, Hood L (1995). "Pairwise end sequencing: a unified approach to genomic mapping and sequencing". Genomics. 26 (2): 345–353. doi:10.1016/0888-7543(95)80219-C. PMID 7601461.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Wendl MC, Barbazuk WB (2005). "Extension of Lander–Waterman Theory for sequencing filtered DNA libraries". BMC Bioinformatics. 6: article 245. doi:10.1186/1471-2105-6-245. PMC 1280921. PMID 16216129.
Wendl MC (2006). "Occupancy modeling of coverage distribution for whole genome shotgun DNA sequencing". Bulletin of Mathematical Biology. 68 (1): 179–196. doi:10.1007/s11538-005-9021-4. PMID 16794926. S2CID 23889071.
Wendl MC (2006). "A general coverage theory for shotgun DNA sequencing". Journal of Computational Biology. 13 (6): 1177–1196. doi:10.1089/cmb.2006.13.1177. PMID 16901236. S2CID 17112274.
Levy S; et al. (2007). "The diploid genome sequence of an individual human". PLOS Biology. 5 (10): article e254. doi:10.1371/journal.pbio.0050254. PMC 1964779. PMID 17803354.
Wheeler DA; et al. (2008). "The complete genome of an individual by massively parallel DNA sequencing". Nature. 452 (7189): 872–876. Bibcode:2008Natur.452..872W. doi:10.1038/nature06884. PMID 18421352.
Wendl MC, Wilson RK (2008). "Aspects of coverage in medical DNA sequencing". BMC Bioinformatics. 9: article 239. doi:10.1186/1471-2105-9-239. PMC 2430974. PMID 18485222.
Ley TJ; et al. (2008). "DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome". Nature. 456 (7218): 66–72. Bibcode:2008Natur.456...66L. doi:10.1038/nature07485. PMC 2603574. PMID 18987736.
Wendl MC, Wilson RK (2009). "Statistical aspects of discerning indel-type structural variation via DNA sequence alignment". BMC Genomics. 10: article 359. doi:10.1186/1471-2164-10-359. PMC 2748092. PMID 19656394.
Wendl MC, Wilson RK (2009). "The theory of discovering rare variants via DNA sequencing". BMC Genomics. 10: article 485. doi:10.1186/1471-2164-10-485. PMC 2778663. PMID 19843339.
Stanhope SA (2010). "Occupancy modeling maximum contig size probabilities and designing metagenomics experiments". PLOS ONE. 5 (7): article e11652. Bibcode:2010PLoSO...511652S. doi:10.1371/journal.pone.0011652. PMC 2912229. PMID 20686599.
Wendl MC; et al. (2012). "Coverage theories for metagenomic DNA sequencing based on a generalization of Stevens' theorem". Journal of Mathematical Biology. 67 (5): 1141–1161. doi:10.1007/s00285-012-0586-x. PMC 3795925. PMID 22965653.
Hooper SD; et al. (2010). "Estimating DNA coverage and abundance in metagenomes using a gamma approximation". Bioinformatics. 26 (3): 295–301. doi:10.1093/bioinformatics/btp687. PMC 2815663. PMID 20008478.

harvard.edu

ui.adsabs.harvard.edu

Fleischmann RD; et al. (1995). "Whole-genome random sequencing and assembly of haemophilus influenzae Rd". Science. 269 (5223): 496–512. Bibcode:1995Sci...269..496F. doi:10.1126/science.7542800. PMID 7542800.
Zhang MQ, Marr TG (1993). "Genome mapping by nonrandom anchoring: a discrete theoretical analysis". Proceedings of the National Academy of Sciences. 90 (2): 600–604. Bibcode:1993PNAS...90..600Z. doi:10.1073/pnas.90.2.600. PMC 45711. PMID 8421694.
Wheeler DA; et al. (2008). "The complete genome of an individual by massively parallel DNA sequencing". Nature. 452 (7189): 872–876. Bibcode:2008Natur.452..872W. doi:10.1038/nature06884. PMID 18421352.
Ley TJ; et al. (2008). "DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome". Nature. 456 (7218): 66–72. Bibcode:2008Natur.456...66L. doi:10.1038/nature07485. PMC 2603574. PMID 18987736.
Stanhope SA (2010). "Occupancy modeling maximum contig size probabilities and designing metagenomics experiments". PLOS ONE. 5 (7): article e11652. Bibcode:2010PLoSO...511652S. doi:10.1371/journal.pone.0011652. PMC 2912229. PMID 20686599.

nih.gov

pubmed.ncbi.nlm.nih.gov

Clarke L, Carbon J (1976). "A colony bank containing synthetic Col-El hybrid plasmids representative of the entire E. coli genome". Cell. 9 (1): 91–99. doi:10.1016/0092-8674(76)90055-6. PMID 788919. S2CID 2535372.
Lander ES, Waterman MS (1988). "Genomic mapping by fingerprinting random clones: a mathematical analysis". Genomics. 2 (3): 231–239. doi:10.1016/0888-7543(88)90007-9. PMID 3294162.
Fleischmann RD; et al. (1995). "Whole-genome random sequencing and assembly of haemophilus influenzae Rd". Science. 269 (5223): 496–512. Bibcode:1995Sci...269..496F. doi:10.1126/science.7542800. PMID 7542800.
Roach JC (1995). "Random subcloning". Genome Research. 5 (5): 464–473. doi:10.1101/gr.5.5.464. PMID 8808467.
Wendl MC, Waterston RH (2002). "Generalized gap model for bacterial artificial chromosome clone fingerprint mapping and shotgun sequencing". Genome Research. 12 (12): 1943–1949. doi:10.1101/gr.655102. PMC 187573. PMID 12466299.
Arratia R; et al. (1991). "Genomic mapping by anchoring random clones: a mathematical analysis". Genomics. 11 (4): 806–827. CiteSeerX 10.1.1.80.8788. doi:10.1016/0888-7543(91)90004-X. PMID 1783390.
Port E; et al. (1995). "Genomic mapping by end-characterized random clones: a mathematical analysis". Genomics. 26 (1): 84–100. CiteSeerX 10.1.1.74.4380. doi:10.1016/0888-7543(95)80086-2. PMID 7782090.
Zhang MQ, Marr TG (1993). "Genome mapping by nonrandom anchoring: a discrete theoretical analysis". Proceedings of the National Academy of Sciences. 90 (2): 600–604. Bibcode:1993PNAS...90..600Z. doi:10.1073/pnas.90.2.600. PMC 45711. PMID 8421694.
Roach JC; et al. (2000). "Parking strategies for genome sequencing". Genome Research. 10 (7): 1020–1030. doi:10.1101/gr.10.7.1020. PMC 310895. PMID 10899151.
Roach JC, Boysen C, Wang K, Hood L (1995). "Pairwise end sequencing: a unified approach to genomic mapping and sequencing". Genomics. 26 (2): 345–353. doi:10.1016/0888-7543(95)80219-C. PMID 7601461.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Wendl MC, Barbazuk WB (2005). "Extension of Lander–Waterman Theory for sequencing filtered DNA libraries". BMC Bioinformatics. 6: article 245. doi:10.1186/1471-2105-6-245. PMC 1280921. PMID 16216129.
Wendl MC (2006). "Occupancy modeling of coverage distribution for whole genome shotgun DNA sequencing". Bulletin of Mathematical Biology. 68 (1): 179–196. doi:10.1007/s11538-005-9021-4. PMID 16794926. S2CID 23889071.
Wendl MC (2006). "A general coverage theory for shotgun DNA sequencing". Journal of Computational Biology. 13 (6): 1177–1196. doi:10.1089/cmb.2006.13.1177. PMID 16901236. S2CID 17112274.
Levy S; et al. (2007). "The diploid genome sequence of an individual human". PLOS Biology. 5 (10): article e254. doi:10.1371/journal.pbio.0050254. PMC 1964779. PMID 17803354.
Wheeler DA; et al. (2008). "The complete genome of an individual by massively parallel DNA sequencing". Nature. 452 (7189): 872–876. Bibcode:2008Natur.452..872W. doi:10.1038/nature06884. PMID 18421352.
Wendl MC, Wilson RK (2008). "Aspects of coverage in medical DNA sequencing". BMC Bioinformatics. 9: article 239. doi:10.1186/1471-2105-9-239. PMC 2430974. PMID 18485222.
Ley TJ; et al. (2008). "DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome". Nature. 456 (7218): 66–72. Bibcode:2008Natur.456...66L. doi:10.1038/nature07485. PMC 2603574. PMID 18987736.
Wendl MC, Wilson RK (2009). "Statistical aspects of discerning indel-type structural variation via DNA sequence alignment". BMC Genomics. 10: article 359. doi:10.1186/1471-2164-10-359. PMC 2748092. PMID 19656394.
Wendl MC, Wilson RK (2009). "The theory of discovering rare variants via DNA sequencing". BMC Genomics. 10: article 485. doi:10.1186/1471-2164-10-485. PMC 2778663. PMID 19843339.
Stanhope SA (2010). "Occupancy modeling maximum contig size probabilities and designing metagenomics experiments". PLOS ONE. 5 (7): article e11652. Bibcode:2010PLoSO...511652S. doi:10.1371/journal.pone.0011652. PMC 2912229. PMID 20686599.
Wendl MC; et al. (2012). "Coverage theories for metagenomic DNA sequencing based on a generalization of Stevens' theorem". Journal of Mathematical Biology. 67 (5): 1141–1161. doi:10.1007/s00285-012-0586-x. PMC 3795925. PMID 22965653.
Hooper SD; et al. (2010). "Estimating DNA coverage and abundance in metagenomes using a gamma approximation". Bioinformatics. 26 (3): 295–301. doi:10.1093/bioinformatics/btp687. PMC 2815663. PMID 20008478.

ncbi.nlm.nih.gov

Wendl MC, Waterston RH (2002). "Generalized gap model for bacterial artificial chromosome clone fingerprint mapping and shotgun sequencing". Genome Research. 12 (12): 1943–1949. doi:10.1101/gr.655102. PMC 187573. PMID 12466299.
Zhang MQ, Marr TG (1993). "Genome mapping by nonrandom anchoring: a discrete theoretical analysis". Proceedings of the National Academy of Sciences. 90 (2): 600–604. Bibcode:1993PNAS...90..600Z. doi:10.1073/pnas.90.2.600. PMC 45711. PMID 8421694.
Roach JC; et al. (2000). "Parking strategies for genome sequencing". Genome Research. 10 (7): 1020–1030. doi:10.1101/gr.10.7.1020. PMC 310895. PMID 10899151.
Wendl MC, Barbazuk WB (2005). "Extension of Lander–Waterman Theory for sequencing filtered DNA libraries". BMC Bioinformatics. 6: article 245. doi:10.1186/1471-2105-6-245. PMC 1280921. PMID 16216129.
Levy S; et al. (2007). "The diploid genome sequence of an individual human". PLOS Biology. 5 (10): article e254. doi:10.1371/journal.pbio.0050254. PMC 1964779. PMID 17803354.
Wendl MC, Wilson RK (2008). "Aspects of coverage in medical DNA sequencing". BMC Bioinformatics. 9: article 239. doi:10.1186/1471-2105-9-239. PMC 2430974. PMID 18485222.
Ley TJ; et al. (2008). "DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome". Nature. 456 (7218): 66–72. Bibcode:2008Natur.456...66L. doi:10.1038/nature07485. PMC 2603574. PMID 18987736.
Wendl MC, Wilson RK (2009). "Statistical aspects of discerning indel-type structural variation via DNA sequence alignment". BMC Genomics. 10: article 359. doi:10.1186/1471-2164-10-359. PMC 2748092. PMID 19656394.
Wendl MC, Wilson RK (2009). "The theory of discovering rare variants via DNA sequencing". BMC Genomics. 10: article 485. doi:10.1186/1471-2164-10-485. PMC 2778663. PMID 19843339.
Stanhope SA (2010). "Occupancy modeling maximum contig size probabilities and designing metagenomics experiments". PLOS ONE. 5 (7): article e11652. Bibcode:2010PLoSO...511652S. doi:10.1371/journal.pone.0011652. PMC 2912229. PMID 20686599.
Wendl MC; et al. (2012). "Coverage theories for metagenomic DNA sequencing based on a generalization of Stevens' theorem". Journal of Mathematical Biology. 67 (5): 1141–1161. doi:10.1007/s00285-012-0586-x. PMC 3795925. PMID 22965653.
Hooper SD; et al. (2010). "Estimating DNA coverage and abundance in metagenomes using a gamma approximation". Bioinformatics. 26 (3): 295–301. doi:10.1093/bioinformatics/btp687. PMC 2815663. PMID 20008478.

psu.edu

citeseerx.ist.psu.edu

Arratia R; et al. (1991). "Genomic mapping by anchoring random clones: a mathematical analysis". Genomics. 11 (4): 806–827. CiteSeerX 10.1.1.80.8788. doi:10.1016/0888-7543(91)90004-X. PMID 1783390.
Port E; et al. (1995). "Genomic mapping by end-characterized random clones: a mathematical analysis". Genomics. 26 (1): 84–100. CiteSeerX 10.1.1.74.4380. doi:10.1016/0888-7543(95)80086-2. PMID 7782090.

semanticscholar.org

api.semanticscholar.org

Clarke L, Carbon J (1976). "A colony bank containing synthetic Col-El hybrid plasmids representative of the entire E. coli genome". Cell. 9 (1): 91–99. doi:10.1016/0092-8674(76)90055-6. PMID 788919. S2CID 2535372.
Wendl MC (2006). "Occupancy modeling of coverage distribution for whole genome shotgun DNA sequencing". Bulletin of Mathematical Biology. 68 (1): 179–196. doi:10.1007/s11538-005-9021-4. PMID 16794926. S2CID 23889071.
Wendl MC (2006). "A general coverage theory for shotgun DNA sequencing". Journal of Computational Biology. 13 (6): 1177–1196. doi:10.1089/cmb.2006.13.1177. PMID 16901236. S2CID 17112274.

wustl.edu

digitalcommons.wustl.edu

Wendl MC (2006). "A general coverage theory for shotgun DNA sequencing". Journal of Computational Biology. 13 (6): 1177–1196. doi:10.1089/cmb.2006.13.1177. PMID 16901236. S2CID 17112274.