Environmental DNA (English Wikipedia)

Tani K, Nasu M (2010). "Roles of Extracellular DNA in Bacterial Ecosystems". In Kikuchi Y, Rykova EY (eds.). Extracellular Nucleic Acids. Springer. pp. 25–38. ISBN 978-3-642-12616-1.

biomeme.com

"A Guide to Environmental DNA (eDNA) by Biomeme". Biomeme.

biorxiv.org

Littlefair, Joanne E.; Hrenchuk, Lee E.; Blanchfield, Paul J.; Rennie, Michael D.; Cristescu, Melania E. (26 April 2020). "Thermal stratification and fish thermal preference explain vertical eDNA distributions in lakes". bioRxiv. 30 (13): 3083–3096. doi:10.1101/2020.04.21.042820. PMID 32888228. S2CID 218466213.

books.google.com

Collen, Ben; (Zoologist), Monika Böhm; Kemp, Rachael; Baillie, Jonathan (2012). Spineless: Status and Trends of the World's Invertebrates. ISBN 9780900881701.
European Red List of Bees. Publications Office. 2014. ISBN 9789279445125.
Swaay, Chris van (2010). European Red List of Butterflies. IUCN (International Union for Conservation of Nature). ISBN 9789279141515.
Silva, João Pedro (2008). LIFE and Europe's Grasslands: Restoring a Forgotten Habitat. Office for Official Publications of the Europ. Communities. ISBN 9789279101595.
Heessen, Henk J. L.; Daan, Niels; Ellis, Jim R. (September 2015). Fish atlas of the Celtic Sea, North Sea, and Baltic Sea: Based on international research-vessel surveys. Brill. ISBN 9789086868780.
Schiebel, Ralf; Hemleben, Christoph (17 February 2017). Planktic Foraminifers in the Modern Ocean. Springer. ISBN 978-3-662-50297-6.

creativecommons.org

Thomsen, Philip Francis; Sigsgaard, Eva E. (2019). "Environmental DNA metabarcoding of wild flowers reveals diverse communities of terrestrial arthropods". Ecology and Evolution. 9 (4): 1665–1679. Bibcode:2019EcoEv...9.1665T. doi:10.1002/ece3.4809. PMC 6392377. PMID 30847063. S2CID 71143282. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Ruppert, Krista M.; Kline, Richard J.; Rahman, Md Saydur (2019). "Past, present, and future perspectives of environmental DNA (EDNA) metabarcoding: A systematic review in methods, monitoring, and applications of global eDNA". Global Ecology and Conservation. 17: e00547. doi:10.1016/j.gecco.2019.e00547. S2CID 133855497. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Lennon, J. T.; Muscarella, M. E.; Placella, S. A.; Lehmkuhl, B. K. (2018). "How, when, and Where Relic DNA Affects Microbial Diversity". mBio. 9 (3). doi:10.1128/mBio.00637-18. PMC 6016248. PMID 29921664. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Armbrecht, Linda (2020). "The Potential of Sedimentary Ancient DNA to Reconstruct Past Ocean Ecosystems". Oceanography. 33 (2). doi:10.5670/oceanog.2020.211. S2CID 221020884. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Gong; Fan; Li; Li; Zhang; Gromig; Smith; Dummann; Berger; Eisen; Tell; Biskaborn; Koglin; Wilhelms; Broy; Liu; Yang; Li; Liu; Talalay (2019). "Coring of Antarctic Subglacial Sediments". Journal of Marine Science and Engineering. 7 (6): 194. doi:10.3390/jmse7060194. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Franklin, Thomas W.; McKelvey, Kevin S.; Golding, Jessie D.; Mason, Daniel H.; Dysthe, Joseph C.; Pilgrim, Kristine L.; Squires, John R.; Aubry, Keith B.; Long, Robert A.; Greaves, Samuel E.; Raley, Catherine M.; Jackson, Scott; MacKay, Paula; Lisbon, Joshua; Sauder, Joel D.; Pruss, Michael T.; Heffington, Don; Schwartz, Michael K. (2019). "Using environmental DNA methods to improve winter surveys for rare carnivores: DNA from snow and improved noninvasive techniques". Biological Conservation. 229: 50–58. Bibcode:2019BCons.229...50F. doi:10.1016/j.biocon.2018.11.006. S2CID 91312879. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Clare, Elizabeth L.; Economou, Chloe K.; Faulkes, Chris G.; Gilbert, James D.; Bennett, Frances; Drinkwater, Rosie; Littlefair, Joanne E. (2021). "EDNAir: Proof of concept that animal DNA can be collected from air sampling". PeerJ. 9: e11030. doi:10.7717/peerj.11030. PMC 8019316. PMID 33850648. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Salter, Ian; Joensen, Mourits; Kristiansen, Regin; Steingrund, Petur; Vestergaard, Poul (2019). "Environmental DNA concentrations are correlated with regional biomass of Atlantic cod in oceanic waters". Communications Biology. 2: 461. doi:10.1038/s42003-019-0696-8. PMC 6904555. PMID 31840106. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Corinaldesi, C.; Tangherlini, M.; Manea, E.; Dell'Anno, A. (2018). "Extracellular DNA as a genetic recorder of microbial diversity in benthic deep-sea ecosystems". Scientific Reports. 8 (1): 1839. Bibcode:2018NatSR...8.1839C. doi:10.1038/s41598-018-20302-7. PMC 5789842. PMID 29382896. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Barrenechea Angeles, Inès; Lejzerowicz, Franck; Cordier, Tristan; Scheplitz, Janin; Kucera, Michal; Ariztegui, Daniel; Pawlowski, Jan; Morard, Raphaël (2020). "Planktonic foraminifera eDNA signature deposited on the seafloor remains preserved after burial in marine sediments". Scientific Reports. 10 (1): 20351. doi:10.1038/s41598-020-77179-8. PMC 7684305. PMID 33230106. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.

dcu.ie

doras.dcu.ie

Williams, Molly-Ann; O'Grady, Joyce; Ball, Bernard; Carlsson, Jens; Eyto, Elvira de; McGinnity, Philip; Jennings, Eleanor; Regan, Fiona; Parle-McDermott, Anne (2019). "The application of CRISPR-Cas for single species identification from environmental DNA". Molecular Ecology Resources. 19 (5): 1106–1114. doi:10.1111/1755-0998.13045. hdl:10468/8053. ISSN 1755-0998. PMID 31177615. S2CID 182949780.

doi.org

Thomsen, Philip Francis; Sigsgaard, Eva E. (2019). "Environmental DNA metabarcoding of wild flowers reveals diverse communities of terrestrial arthropods". Ecology and Evolution. 9 (4): 1665–1679. Bibcode:2019EcoEv...9.1665T. doi:10.1002/ece3.4809. PMC 6392377. PMID 30847063. S2CID 71143282. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Stewart, Kathryn A. (1 April 2019). "Understanding the effects of biotic and abiotic factors on sources of aquatic environmental DNA". Biodiversity and Conservation. 28 (5): 983–1001. Bibcode:2019BiCon..28..983S. doi:10.1007/s10531-019-01709-8. hdl:11245.1/1caeb8dd-3d0b-493c-90dd-c180c9c8f21c. ISSN 1572-9710. S2CID 61811470.
Fahner, Nicole (2016). "Large-Scale Monitoring of Plants through Environmental DNA Metabarcoding of Soil: Recovery, Resolution, and Annotation of Four DNA Markers". PLOS ONE. 11 (6): 1–16. Bibcode:2016PLoSO..1157505F. doi:10.1371/journal.pone.0157505. ISSN 1932-6203. PMC 4911152. PMID 27310720 – via Directory of Open Access Journals.
Ruppert, Krista M.; Kline, Richard J.; Rahman, Md Saydur (2019). "Past, present, and future perspectives of environmental DNA (EDNA) metabarcoding: A systematic review in methods, monitoring, and applications of global eDNA". Global Ecology and Conservation. 17: e00547. doi:10.1016/j.gecco.2019.e00547. S2CID 133855497. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Bohmann, Kristine; Evans, Alice; Gilbert, M. Thomas P.; Carvalho, Gary R.; Creer, Simon; Knapp, Michael; Yu, Douglas W.; de Bruyn, Mark (1 June 2014). "Environmental DNA for wildlife biology and biodiversity monitoring". Trends in Ecology & Evolution. 29 (6): 358–367. doi:10.1016/j.tree.2014.04.003. ISSN 1872-8383. PMID 24821515.
Qu, Chanjuan; Stewart, Kathryn A. (18 February 2019). "Evaluating monitoring options for conservation: comparing traditional and environmental DNA tools for a critically endangered mammal". The Science of Nature. 106 (3): 9. Bibcode:2019SciNa.106....9Q. doi:10.1007/s00114-019-1605-1. hdl:11245.1/d02ea724-b763-42b2-8f97-696ef88db996. ISSN 1432-1904. PMID 30778682. S2CID 66881381.
Thomsen, Philip Francis; Willerslev, Eske (1 March 2015). "Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity". Biological Conservation. Special Issue: Environmental DNA: A powerful new tool for biological conservation. 183: 4–18. Bibcode:2015BCons.183....4T. doi:10.1016/j.biocon.2014.11.019.
Tsuji, Satsuki (2016). "Effects of water pH and proteinase K treatment on the yield of environmental DNA from water samples". Limnology. 18: 1–7. doi:10.1007/s10201-016-0483-x. ISSN 1439-8621. S2CID 44793881.
Kjær, Kurt H.; et al. (7 December 2022). "A 2-million-year-old ecosystem in Greenland uncovered by environmental DNA". Nature. 612 (7939): 283–291. Bibcode:2022Natur.612..283K. doi:10.1038/s41586-022-05453-y. PMC 9729109. PMID 36477129. S2CID 254367944.
Ficetola, Gentile Francesco; Miaud, Claude; Pompanon, François; Taberlet, Pierre (2008). "Species detection using environmental DNA from water samples". Biology Letters. 4 (4): 423–425. doi:10.1098/rsbl.2008.0118. PMC 2610135. PMID 18400683.
Barnes, Matthew A.; Turner, Cameron R. (2016). "The ecology of environmental DNA and implications for conservation genetics". Conservation Genetics. 17 (1): 1–17. Bibcode:2016ConG...17....1B. doi:10.1007/s10592-015-0775-4. hdl:2346/87600. S2CID 14914544.
Deiner, Kristy; Walser, Jean-Claude; Mächler, Elvira; Altermatt, Florian (2015). "Choice of capture and extraction methods affect detection of freshwater biodiversity from environmental DNA". Biological Conservation. 183: 53–63. Bibcode:2015BCons.183...53D. doi:10.1016/j.biocon.2014.11.018.
Taberlet, Pierre; Coissac, Eric; Pompanon, François; Brochmann, Christian; Willerslev, Eske (2012). "Towards next-generation biodiversity assessment using DNA metabarcoding". Molecular Ecology. 21 (8): 2045–2050. Bibcode:2012MolEc..21.2045T. doi:10.1111/j.1365-294X.2012.05470.x. PMID 22486824. S2CID 41437334.
Stewart, Kathryn; Ma, Hongjuan; Zheng, Jinsong; Zhao, Jianfu (2017). "Using environmental DNA to assess population-wide spatiotemporal reserve use". Conservation Biology (in Spanish). 31 (5): 1173–1182. Bibcode:2017ConBi..31.1173S. doi:10.1111/cobi.12910. ISSN 1523-1739. PMID 28221696. S2CID 3781648.
Goldberg, Caren S.; Turner, Cameron R.; Deiner, Kristy; Klymus, Katy E.; Thomsen, Philip Francis; Murphy, Melanie A.; Spear, Stephen F.; McKee, Anna; Oyler-Mccance, Sara J.; Cornman, Robert Scott; Laramie, Matthew B.; Mahon, Andrew R.; Lance, Richard F.; Pilliod, David S.; Strickler, Katherine M.; Waits, Lisette P.; Fremier, Alexander K.; Takahara, Teruhiko; Herder, Jelger E.; Taberlet, Pierre (2016). "Critical considerations for the application of environmental DNA methods to detect aquatic species". Methods in Ecology and Evolution. 7 (11): 1299–1307. Bibcode:2016MEcEv...7.1299G. doi:10.1111/2041-210X.12595. hdl:20.500.11850/502281. S2CID 89432389.
Hering, Daniel; Borja, Angel; Jones, J.Iwan; Pont, Didier; Boets, Pieter; Bouchez, Agnes; Bruce, Kat; Drakare, Stina; Hänfling, Bernd; Kahlert, Maria; Leese, Florian; Meissner, Kristian; Mergen, Patricia; Reyjol, Yorick; Segurado, Pedro; Vogler, Alfried; Kelly, Martyn (2018). "Implementation options for DNA-based identification into ecological status assessment under the European Water Framework Directive". Water Research. 138: 192–205. Bibcode:2018WatRe.138..192H. doi:10.1016/j.watres.2018.03.003. PMID 29602086. S2CID 5008250.
Deiner, Kristy; Bik, Holly M.; Mächler, Elvira; Seymour, Mathew; Lacoursière-Roussel, Anaïs; Altermatt, Florian; Creer, Simon; Bista, Iliana; Lodge, David M.; Vere, Natasha; Pfrender, Michael E.; Bernatchez, Louis (2017). "Environmental DNA metabarcoding: Transforming how we survey animal and plant communities". Molecular Ecology. 26 (21): 5872–5895. Bibcode:2017MolEc..26.5872D. doi:10.1111/mec.14350. hdl:20.500.11850/455284. PMID 28921802. S2CID 8001074.
Ma, Hongjuan; Stewart, Kathryn; Lougheed, Stephen; Zheng, Jinsong; Wang, Yuxiang; Zhao, Jianfu (1 December 2016). "Characterization, optimization, and validation of environmental DNA (eDNA) markers to detect an endangered aquatic mammal". Conservation Genetics Resources. 8 (4): 561–568. Bibcode:2016ConGR...8..561M. doi:10.1007/s12686-016-0597-9. ISSN 1877-7260. S2CID 1613649.
Coissac, Eric; Riaz, Tiayyba; Puillandre, Nicolas (2012). "Bioinformatic challenges for DNA metabarcoding of plants and animals". Molecular Ecology. 21 (8): 1834–1847. Bibcode:2012MolEc..21.1834C. doi:10.1111/j.1365-294X.2012.05550.x. PMID 22486822. S2CID 24398174.
Eichmiller, Jessica J.; Best, Sendréa E.; Sorensen, Peter W. (2016). "Effects of Temperature and Trophic State on Degradation of Environmental DNA in Lake Water". Environmental Science & Technology. 50 (4): 1859–1867. Bibcode:2016EnST...50.1859E. doi:10.1021/acs.est.5b05672. PMID 26771292.
Carew, Melissa E.; Pettigrove, Vincent J.; Metzeling, Leon; Hoffmann, Ary A. (2013). "Environmental monitoring using next generation sequencing: Rapid identification of macroinvertebrate bioindicator species". Frontiers in Zoology. 10 (1): 45. doi:10.1186/1742-9994-10-45. PMC 3750358. PMID 23919569.
Creer, Simon; Deiner, Kristy; Frey, Serita; Porazinska, Dorota; Taberlet, Pierre; Thomas, W. Kelley; Potter, Caitlin; Bik, Holly M. (2016). "The ecologist's field guide to sequence-based identification of biodiversity". Methods in Ecology and Evolution. 7 (9): 1008–1018. Bibcode:2016MEcEv...7.1008C. doi:10.1111/2041-210X.12574. hdl:20.500.11850/125378. S2CID 87512991.
Qu, Chanjuan; Stewart, Kathryn A.; Clemente-Carvalho, Rute; Zheng, Jinsong; Wang, Yuxiang; Gong, Cheng; Ma, Limin; Zhao, Jianfu; Lougheed, Stephen C. (7 October 2020). "Comparing fish prey diversity for a critically endangered aquatic mammal in a reserve and the wild using eDNA metabarcoding". Scientific Reports. 10 (1): 16715. doi:10.1038/s41598-020-73648-2. ISSN 2045-2322. PMC 7542144. PMID 33028872.
Banerjee, Pritam; Stewart, Kathryn A.; Antognazza, Caterina M.; Bunholi, Ingrid V.; Deiner, Kristy; Barnes, Matthew A.; Saha, Santanu; Verdier, Héloïse; Doi, Hideyuki; Maity, Jyoti Prakash; Chan, Michael W.Y.; Chen, Chien Yen (2022). "Plant–animal interactions in the era of environmental DNA (eDNA)—A review". Environmental DNA. 4 (5): 987–999. doi:10.1002/edn3.308. hdl:11383/2137932. S2CID 248977497.
Ficetola, Gentile Francesco; Taberlet, Pierre; Coissac, Eric (2016). "How to limit false positives in environmental DNA and metabarcoding?". Molecular Ecology Resources. 16 (3): 604–607. doi:10.1111/1755-0998.12508. PMID 27062589. S2CID 785279.
Yu, Douglas W.; Ji, Yinqiu; Emerson, Brent C.; Wang, Xiaoyang; Ye, Chengxi; Yang, Chunyan; Ding, Zhaoli (2012). "Biodiversity soup: Metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring". Methods in Ecology and Evolution. 3 (4): 613–623. Bibcode:2012MEcEv...3..613Y. doi:10.1111/j.2041-210X.2012.00198.x. hdl:10261/193380. S2CID 83095866.
Cristescu, Melania E. (2014). "From barcoding single individuals to metabarcoding biological communities: Towards an integrative approach to the study of global biodiversity". Trends in Ecology & Evolution. 29 (10): 566–571. doi:10.1016/j.tree.2014.08.001. PMID 25175416. S2CID 18352572.
Gibson, Joel F.; Shokralla, Shadi; Curry, Colin; Baird, Donald J.; Monk, Wendy A.; King, Ian; Hajibabaei, Mehrdad (2015). "Large-Scale Biomonitoring of Remote and Threatened Ecosystems via High-Throughput Sequencing". PLOS ONE. 10 (10): e0138432. Bibcode:2015PLoSO..1038432G. doi:10.1371/journal.pone.0138432. PMC 4619546. PMID 26488407.
Chua, Physilia Y. S.; Bourlat, Sarah J.; Ferguson, Cameron; Korlevic, Petra; Zhao, Leia; Ekrem, Torbjørn; Meier, Rudolf; Lawniczak, Mara K. N. (10 March 2023). "Future of DNA-based insect monitoring". Trends in Genetics. 39 (7): 531–544. doi:10.1016/j.tig.2023.02.012. PMID 36907721. S2CID 257470926.
Lennon, J. T.; Muscarella, M. E.; Placella, S. A.; Lehmkuhl, B. K. (2018). "How, when, and Where Relic DNA Affects Microbial Diversity". mBio. 9 (3). doi:10.1128/mBio.00637-18. PMC 6016248. PMID 29921664. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Vlassov VV, Laktionov PP, Rykova EY (July 2007). "Extracellular nucleic acids". BioEssays. 29 (7): 654–67. doi:10.1002/bies.20604. PMID 17563084. S2CID 32463239.
Finkel SE, Kolter R (November 2001). "DNA as a nutrient: novel role for bacterial competence gene homologs". Journal of Bacteriology. 183 (21): 6288–93. doi:10.1128/JB.183.21.6288-6293.2001. PMC 100116. PMID 11591672.
Mulcahy H, Charron-Mazenod L, Lewenza S (November 2008). "Extracellular DNA chelates cations and induces antibiotic resistance in Pseudomonas aeruginosa biofilms". PLOS Pathogens. 4 (11): e1000213. doi:10.1371/journal.ppat.1000213. PMC 2581603. PMID 19023416.
Berne C, Kysela DT, Brun YV (August 2010). "A bacterial extracellular DNA inhibits settling of motile progeny cells within a biofilm". Molecular Microbiology. 77 (4): 815–29. doi:10.1111/j.1365-2958.2010.07267.x. PMC 2962764. PMID 20598083.
Whitchurch CB, Tolker-Nielsen T, Ragas PC, Mattick JS (February 2002). "Extracellular DNA required for bacterial biofilm formation". Science. 295 (5559): 1487. doi:10.1126/science.295.5559.1487. PMID 11859186.
Hu W, Li L, Sharma S, Wang J, McHardy I, Lux R, Yang Z, He X, Gimzewski JK, Li Y, Shi W (2012). "DNA builds and strengthens the extracellular matrix in Myxococcus xanthus biofilms by interacting with exopolysaccharides". PLOS ONE. 7 (12): e51905. Bibcode:2012PLoSO...751905H. doi:10.1371/journal.pone.0051905. PMC 3530553. PMID 23300576.
Foote AD, Thomsen PF, Sveegaard S, Wahlberg M, Kielgast J, Kyhn LA, et al. (2012). "Investigating the potential use of environmental DNA (eDNA) for genetic monitoring of marine mammals". PLOS ONE. 7 (8): e41781. Bibcode:2012PLoSO...741781F. doi:10.1371/journal.pone.0041781. PMC 3430683. PMID 22952587.
Nunn, Jack S.; Shafee, Thomas (2022). "Standardised Data on Initiatives – STARDIT: Beta Version". OSF Preprints. 8 (1): 31. doi:10.31219/osf.io/w5xj6. PMC 9294764. PMID 35854364. S2CID 242248848.
Armbrecht, Linda (2020). "The Potential of Sedimentary Ancient DNA to Reconstruct Past Ocean Ecosystems". Oceanography. 33 (2). doi:10.5670/oceanog.2020.211. S2CID 221020884. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Bass, David (2015). "Diverse Applications of Environmental DNA Methods in Parasitology". Trends in Parasitology. 31 (10): 499–513. doi:10.1016/j.pt.2015.06.013. hdl:20.500.11850/105112. PMID 26433253.
Willerslev, Eske; Hansen, Anders J.; Binladen, Jonas; Brand, Tina B.; Gilbert, M. Thomas fP.; Shapiro, Beth; Bunce, Michael; Wiuf, Carsten; Gilichinsky, David A. (2 May 2003). "Diverse Plant and Animal Genetic Records from Holocene and Pleistocene Sediments". Science. 300 (5620): 791–795. Bibcode:2003Sci...300..791W. doi:10.1126/science.1084114. ISSN 0036-8075. PMID 12702808. S2CID 1222227.
Andersen, Kenneth; Bird, Karen Lise; Rasmussen, Morten; Haile, James; Breuning-Madsen, Henrik; Kjaer, Kurt H.; Orlando, Ludovic; Gilbert, M. Thomas P.; Willerslev, Eske (1 April 2012). "Meta-barcoding of 'dirt' DNA from soil reflects vertebrate biodiversity". Molecular Ecology. 21 (8): 1966–1979. Bibcode:2012MolEc..21.1966A. doi:10.1111/j.1365-294X.2011.05261.x. ISSN 1365-294X. PMID 21917035. S2CID 43351435.
Nunn, Jack (2020). "Science for All - Publicly funded research report (June 2018-December 2019)". Figshare. doi:10.26181/5eba630a64e08.
Turner, Cameron R. (2014). "Fish environmental DNA is more concentrated in aquatic sediments than surface water". Biological Conservation. 183: 93–102. doi:10.1016/j.biocon.2014.11.017. ISSN 0006-3207.
Gong; Fan; Li; Li; Zhang; Gromig; Smith; Dummann; Berger; Eisen; Tell; Biskaborn; Koglin; Wilhelms; Broy; Liu; Yang; Li; Liu; Talalay (2019). "Coring of Antarctic Subglacial Sediments". Journal of Marine Science and Engineering. 7 (6): 194. doi:10.3390/jmse7060194. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Schultz, Martin (2015). "Modeling the Sensitivity of Field Surveys for Detection of Environmental DNA (eDNA)". PLOS ONE. 10 (10): 1–16. Bibcode:2015PLoSO..1041503S. doi:10.1371/journal.pone.0141503. ISSN 1932-6203. PMC 4624909. PMID 26509674.
Littlefair, Joanne E.; Hrenchuk, Lee E.; Blanchfield, Paul J.; Rennie, Michael D.; Cristescu, Melania E. (26 April 2020). "Thermal stratification and fish thermal preference explain vertical eDNA distributions in lakes". bioRxiv. 30 (13): 3083–3096. doi:10.1101/2020.04.21.042820. PMID 32888228. S2CID 218466213.
Stoeckle, Bernhard (2016). "Environmental DNA as a monitoring tool for the endangered freshwater pearl mussel (Margaritifera margaritifera L.): a substitute for classical monitoring approaches?". Aquatic Conservation: Marine and Freshwater Ecosystems. 26 (6): 1120–1129. Bibcode:2016ACMFE..26.1120S. doi:10.1002/aqc.2611.
Souza, Lesley (2016). "Environmental DNA (eDNA) Detection Probability Is Influenced by Seasonal Activity of Organisms". PLOS ONE. 11 (10): 1–15. Bibcode:2016PLoSO..1165273D. doi:10.1371/journal.pone.0165273. ISSN 1932-6203. PMC 5077074. PMID 27776150.
Saeko, Matsuhashi (2016). "Evaluation of the Environmental DNA Method for Estimating Distribution and Biomass of Submerged Aquatic Plants". PLOS ONE. 11 (6): 1–14. Bibcode:2016PLoSO..1156217M. doi:10.1371/journal.pone.0156217. ISSN 1932-6203. PMC 4909283. PMID 27304876.
Tedersoo, Leho; Bahram, Mohammad; Põlme, Sergei; Kõljalg, Urmas; Yorou, Nourou S.; Wijesundera, Ravi; Ruiz, Luis Villarreal; Vasco-Palacios, Aída M.; Thu, Pham Quang (28 November 2014). "Global diversity and geography of soil fungi" (PDF). Science. 346 (6213): 1256688. doi:10.1126/science.1256688. hdl:10447/102930. ISSN 0036-8075. PMID 25430773. S2CID 206559506.
Detheridge, Andrew Paul; Comont, David; Callaghan, Tony Martin; Bussell, Jennifer; Brand, Graham; Gwynn-Jones, Dylan; Scullion, John; Griffith, Gareth Wyn (June 2018). "Vegetation and edaphic factors influence rapid establishment of distinct fungal communities on former coal-spoil sites". Fungal Ecology. 33: 92–103. doi:10.1016/j.funeco.2018.02.002. ISSN 1754-5048.
Jones, Rhys Aled; Brophy, Peter M.; Davis, Chelsea N.; Davies, Teri E.; Emberson, Holly; Rees Stevens, Pauline; Williams, Hefin Wyn (8 June 2018). "Detection of Galba truncatula, Fasciola hepatica and Calicophoron daubneyi environmental DNA within water sources on pasture land, a future tool for fluke control?". Parasites & Vectors. 11 (1): 342. doi:10.1186/s13071-018-2928-z. ISSN 1756-3305. PMC 5994096. PMID 29884202.
Bergman, Paul S.; Schumer, Gregg; Blankenship, Scott; Campbell, Elizabeth (2016). "Detection of Adult Green Sturgeon Using Environmental DNA Analysis". PLOS ONE. 11 (4): 1–8. Bibcode:2016PLoSO..1153500B. doi:10.1371/journal.pone.0153500. ISSN 1932-6203. PMC 4838217. PMID 27096433.
Seymour, Mathew; Durance, Isabelle; Cosby, Bernard J.; Ransom-Jones, Emma; Deiner, Kristy; Ormerod, Steve J.; Colbourne, John K.; Wilgar, Gregory; Carvalho, Gary R. (22 January 2018). "Acidity promotes degradation of multi-species environmental DNA in lotic mesocosms". Communications Biology. 1 (1): 4. doi:10.1038/s42003-017-0005-3. ISSN 2399-3642. PMC 6123786. PMID 30271891.
Collins, Rupert A.; Wangensteen, Owen S.; O’Gorman, Eoin J.; Mariani, Stefano; Sims, David W.; Genner, Martin J. (5 November 2018). "Persistence of environmental DNA in marine systems". Communications Biology. 1 (1): 185. doi:10.1038/s42003-018-0192-6. ISSN 2399-3642. PMC 6218555. PMID 30417122.
Hunter, Margaret E.; Dorazio, Robert M.; Butterfield, John S. S.; Meigs-Friend, Gaia; Nico, Leo G.; Ferrante, Jason A. (20 November 2016). "Detection limits of quantitative and digital PCR assays and their influence in presence-absence surveys of environmental DNA". Molecular Ecology Resources. 17 (2): 221–229. doi:10.1111/1755-0998.12619. ISSN 1755-098X. PMID 27768244.
Williams, Molly-Ann; O'Grady, Joyce; Ball, Bernard; Carlsson, Jens; Eyto, Elvira de; McGinnity, Philip; Jennings, Eleanor; Regan, Fiona; Parle-McDermott, Anne (2019). "The application of CRISPR-Cas for single species identification from environmental DNA". Molecular Ecology Resources. 19 (5): 1106–1114. doi:10.1111/1755-0998.13045. hdl:10468/8053. ISSN 1755-0998. PMID 31177615. S2CID 182949780.
Opportunities in Ocean Sciences. Washington, D.C.: National Academies Press. 1 January 1998. doi:10.17226/9500. ISBN 9780309582926.
Dirzo, R.; Young, H. S.; Galetti, M.; Ceballos, G.; Isaac, N. J. B.; Collen, B. (2014). "Defaunation in the Anthropocene" (PDF). Science. 345 (6195): 401–406. Bibcode:2014Sci...345..401D. doi:10.1126/science.1251817. PMID 25061202. S2CID 206555761.
Stork, Nigel E. (2018). "How Many Species of Insects and Other Terrestrial Arthropods Are There on Earth?". Annual Review of Entomology. 63: 31–45. doi:10.1146/annurev-ento-020117-043348. PMID 28938083. S2CID 23755007.
Habel, Jan Christian; Dengler, Jürgen; Janišová, Monika; Török, Péter; Wellstein, Camilla; Wiezik, Michal (2013). "European grassland ecosystems: Threatened hotspots of biodiversity". Biodiversity and Conservation. 22 (10): 2131–2138. Bibcode:2013BiCon..22.2131H. doi:10.1007/s10531-013-0537-x. S2CID 15901140.
Joern, Anthony; Laws, Angela N. (2013). "Ecological Mechanisms Underlying Arthropod Species Diversity in Grasslands". Annual Review of Entomology. 58: 19–36. doi:10.1146/annurev-ento-120811-153540. PMID 22830354.
Biesmeijer, J. C.; Roberts, S. P.; Reemer, M.; Ohlemüller, R.; Edwards, M.; Peeters, T.; Schaffers, A. P.; Potts, S. G.; Kleukers, R.; Thomas, C. D.; Settele, J.; Kunin, W. E. (2006). "Parallel Declines in Pollinators and Insect-Pollinated Plants in Britain and the Netherlands". Science. 313 (5785): 351–354. Bibcode:2006Sci...313..351B. doi:10.1126/science.1127863. PMID 16857940. S2CID 16273738.
Goulson, D.; Nicholls, E.; Botias, C.; Rotheray, E. L. (2015). "Bee declines driven by combined stress from parasites, pesticides, and lack of flowers". Science. 347 (6229). doi:10.1126/science.1255957. PMID 25721506. S2CID 206558985.
Potts, Simon G.; Biesmeijer, Jacobus C.; Kremen, Claire; Neumann, Peter; Schweiger, Oliver; Kunin, William E. (2010). "Global pollinator declines: Trends, impacts and drivers". Trends in Ecology & Evolution. 25 (6): 345–353. doi:10.1016/j.tree.2010.01.007. PMID 20188434.
European Environment Agency (2013). The European grassland butterfly indicator: 1990–2011. Publications Office. doi:10.2800/89760. ISBN 9789292134020.
Ollerton, Jeff; Winfree, Rachael; Tarrant, Sam (2011). "How many flowering plants are pollinated by animals?". Oikos. 120 (3): 321–326. Bibcode:2011Oikos.120..321O. doi:10.1111/j.1600-0706.2010.18644.x.
Price, Peter W.; Denno, Robert F.; Eubanks, Micky D.; Finke, Deborah L.; Kaplan, Ian (2011). Insect Ecology. doi:10.1017/CBO9780511975387. ISBN 9780511975387.
Hopkins, G. W.; Freckleton, R. P. (2002). "Declines in the numbers of amateur and professional taxonomists: Implications for conservation". Animal Conservation. 5 (3): 245–249. Bibcode:2002AnCon...5..245H. doi:10.1017/S1367943002002299. S2CID 86182871.
Sangster, George; Luksenburg, Jolanda A. (2015). "Declining Rates of Species Described per Taxonomist: Slowdown of Progress or a Side-effect of Improved Quality in Taxonomy?". Systematic Biology. 64 (1): 144–151. doi:10.1093/sysbio/syu069. PMID 25190593.
Wheeler, Q. D.; Raven, P. H.; Wilson, E. O. (2004). "Taxonomy: Impediment or Expedient?". Science. 303 (5656): 285. doi:10.1126/science.303.5656.285. hdl:1808/295. PMID 14726557. S2CID 27481787.
Bush, Alex; Sollmann, Rahel; Wilting, Andreas; Bohmann, Kristine; Cole, Beth; Balzter, Heiko; Martius, Christopher; Zlinszky, András; Calvignac-Spencer, Sébastien; Cobbold, Christina A.; Dawson, Terence P.; Emerson, Brent C.; Ferrier, Simon; Gilbert, M. Thomas P.; Herold, Martin; Jones, Laurence; Leendertz, Fabian H.; Matthews, Louise; Millington, James D. A.; Olson, John R.; Ovaskainen, Otso; Raffaelli, Dave; Reeve, Richard; Rödel, Mark-Oliver; Rodgers, Torrey W.; Snape, Stewart; Visseren-Hamakers, Ingrid; Vogler, Alfried P.; White, Piran C. L.; et al. (2017). "Connecting Earth observation to high-throughput biodiversity data" (PDF). Nature Ecology & Evolution. 1 (7): 176. Bibcode:2017NatEE...1..176B. doi:10.1038/s41559-017-0176. PMID 28812589. S2CID 205564094.
Arribas, Paula; Andújar, Carmelo; Hopkins, Kevin; Shepherd, Matthew; Vogler, Alfried P. (2016). "Metabarcoding and mitochondrial metagenomics of endogean arthropods to unveil the mesofauna of the soil". Methods in Ecology and Evolution. 7 (9): 1071–1081. Bibcode:2016MEcEv...7.1071A. doi:10.1111/2041-210X.12557. hdl:10044/1/49935. S2CID 51899316.
Elbrecht, Vasco; Taberlet, Pierre; Dejean, Tony; Valentini, Alice; Usseglio-Polatera, Philippe; Beisel, Jean-Nicolas; Coissac, Eric; Boyer, Frederic; Leese, Florian (2016). "Testing the potential of a ribosomal 16S marker for DNA metabarcoding of insects". PeerJ. 4: e1966. doi:10.7717/peerj.1966. PMC 4841222. PMID 27114891.
Hajibabaei, Mehrdad; Shokralla, Shadi; Zhou, Xin; Singer, Gregory A. C.; Baird, Donald J. (2011). "Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos". PLOS ONE. 6 (4): e17497. Bibcode:2011PLoSO...617497H. doi:10.1371/journal.pone.0017497. PMC 3076369. PMID 21533287.
Xu, Charles C. Y.; Yen, Ivy J.; Bowman, Dean; Turner, Cameron R. (2015). "Spider Web DNA: A New Spin on Noninvasive Genetics of Predator and Prey". PLOS ONE. 10 (11): e0142503. Bibcode:2015PLoSO..1042503X. doi:10.1371/journal.pone.0142503. PMC 4659541. PMID 26606730. S2CID 5331545.
Derocles, Stéphane A. P.; Evans, Darren M.; Nichols, Paul C.; Evans, S. Aifionn; Lunt, David H. (2015). "Determining Plant – Leaf Miner – Parasitoid Interactions: A DNA Barcoding Approach". PLOS ONE. 10 (2): e0117872. Bibcode:2015PLoSO..1017872D. doi:10.1371/journal.pone.0117872. PMC 4339730. PMID 25710377.
Blake, Max; McKeown, Niall J.; Bushell, Mark L. T.; Shaw, Paul W. (2016). "DNA extraction from spider webs". Conservation Genetics Resources. 8 (3): 219–221. Bibcode:2016ConGR...8..219B. doi:10.1007/s12686-016-0537-8. hdl:2160/43510. S2CID 15122457.
Bittleston, Leonora S.; Baker, Christopher C. M.; Strominger, Lila B.; Pringle, Anne; Pierce, Naomi E. (2016). "Metabarcoding as a tool for investigating arthropod diversity in Nepenthespitcher plants". Austral Ecology. 41 (2): 120–132. Bibcode:2016AusEc..41..120B. doi:10.1111/aec.12271.
Gamonal Gomez, Nerea; Sørensen, Didde Hedegaard; Chua, Physilia Ying Shi; Sigsgaard, Lene (6 December 2022). "Assessing flower-visiting arthropod diversity in apple orchards through metabarcoding of environmental <scp>DNA</scp> from flowers and visual census". Environmental DNA. doi:10.1002/edn3.362. ISSN 2637-4943. S2CID 254391183.
Taberlet, Pierre; Coissac, Eric; Hajibabaei, Mehrdad; Rieseberg, Loren H. (2012). "Environmental DNA". Molecular Ecology. 21 (8): 1789–1793. Bibcode:2012MolEc..21.1789T. doi:10.1111/j.1365-294X.2012.05542.x. PMID 22486819. S2CID 3961830.
Thomsen, Philip Francis; Kielgast, JOS; Iversen, Lars L.; Wiuf, Carsten; Rasmussen, Morten; Gilbert, M. Thomas P.; Orlando, Ludovic; Willerslev, Eske (2012). "Monitoring endangered freshwater biodiversity using environmental DNA". Molecular Ecology. 21 (11): 2565–2573. Bibcode:2012MolEc..21.2565T. doi:10.1111/j.1365-294X.2011.05418.x. PMID 22151771.
Zinger, Lucie; Taberlet, Pierre; Schimann, Heidy; Bonin, Aurélie; Boyer, Frédéric; De Barba, Marta; Gaucher, Philippe; Gielly, Ludovic; Giguet-Covex, Charline; Iribar, Amaia; Réjou-Méchain, Maxime; Rayé, Gilles; Rioux, Delphine; Schilling, Vincent; Tymen, Blaise; Viers, Jérôme; Zouiten, Cyril; Thuiller, Wilfried; Coissac, Eric; Chave, Jérôme (2019). "Body size determines soil community assembly in a tropical forest". Molecular Ecology. 28 (3): 528–543. Bibcode:2019MolEc..28..528Z. doi:10.1111/mec.14919. PMID 30375061. S2CID 53114166.
Jurado-Rivera, José A.; Vogler, Alfried P.; Reid, Chris A.M; Petitpierre, Eduard; Gómez-Zurita, Jesús (2009). "DNA barcoding insect–host plant associations". Proceedings of the Royal Society B: Biological Sciences. 276 (1657): 639–648. doi:10.1098/rspb.2008.1264. PMC 2660938. PMID 19004756.
Paula, Débora P.; Linard, Benjamin; Crampton-Platt, Alex; Srivathsan, Amrita; Timmermans, Martijn J. T. N.; Sujii, Edison R.; Pires, Carmen S. S.; Souza, Lucas M.; Andow, David A.; Vogler, Alfried P. (2016). "Uncovering Trophic Interactions in Arthropod Predators through DNA Shotgun-Sequencing of Gut Contents". PLOS ONE. 11 (9): e0161841. Bibcode:2016PLoSO..1161841P. doi:10.1371/journal.pone.0161841. PMC 5021305. PMID 27622637.
Bohmann, Kristine; Monadjem, Ara; Lehmkuhl Noer, Christina; Rasmussen, Morten; Zeale, Matt R. K.; Clare, Elizabeth; Jones, Gareth; Willerslev, Eske; Gilbert, M. Thomas P. (2011). "Molecular Diet Analysis of Two African Free-Tailed Bats (Molossidae) Using High Throughput Sequencing". PLOS ONE. 6 (6): e21441. Bibcode:2011PLoSO...621441B. doi:10.1371/journal.pone.0021441. PMC 3120876. PMID 21731749.
Vesterinen, Eero J.; Lilley, Thomas; Laine, Veronika N.; Wahlberg, Niklas (2013). "Next Generation Sequencing of Fecal DNA Reveals the Dietary Diversity of the Widespread Insectivorous Predator Daubenton's Bat (Myotis daubentonii) in Southwestern Finland". PLOS ONE. 8 (11): e82168. Bibcode:2013PLoSO...882168V. doi:10.1371/journal.pone.0082168. PMC 3842304. PMID 24312405.
Bell, Karen L.; Fowler, Julie; Burgess, Kevin S.; Dobbs, Emily K.; Gruenewald, David; Lawley, Brice; Morozumi, Connor; Brosi, Berry J. (2017). "Applying Pollen DNA Metabarcoding to the Study of Plant–Pollinator Interactions". Applications in Plant Sciences. 5 (6). doi:10.3732/apps.1600124. PMC 5499302. PMID 28690929. S2CID 6590244.
Pornon, André; Escaravage, Nathalie; Burrus, Monique; Holota, Hélène; Khimoun, Aurélie; Mariette, Jérome; Pellizzari, Charlène; Iribar, Amaia; Etienne, Roselyne; Taberlet, Pierre; Vidal, Marie; Winterton, Peter; Zinger, Lucie; Andalo, Christophe (2016). "Using metabarcoding to reveal and quantify plant-pollinator interactions". Scientific Reports. 6: 27282. Bibcode:2016NatSR...627282P. doi:10.1038/srep27282. PMC 4891682. PMID 27255732.
Franklin, Thomas W.; McKelvey, Kevin S.; Golding, Jessie D.; Mason, Daniel H.; Dysthe, Joseph C.; Pilgrim, Kristine L.; Squires, John R.; Aubry, Keith B.; Long, Robert A.; Greaves, Samuel E.; Raley, Catherine M.; Jackson, Scott; MacKay, Paula; Lisbon, Joshua; Sauder, Joel D.; Pruss, Michael T.; Heffington, Don; Schwartz, Michael K. (2019). "Using environmental DNA methods to improve winter surveys for rare carnivores: DNA from snow and improved noninvasive techniques". Biological Conservation. 229: 50–58. Bibcode:2019BCons.229...50F. doi:10.1016/j.biocon.2018.11.006. S2CID 91312879. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Lynggaard, Christina; Bertelsen, Mads Frost; Jensen, Casper V.; Johnson, Matthew S.; Frøslev, Tobias Guldberg; Olsen, Morten Tange; Bohmann, Kristine (6 January 2022). "Airborne environmental DNA for terrestrial vertebrate community monitoring". Current Biology. 32 (3): 701–707.e5. Bibcode:2022CBio...32E.701L. doi:10.1016/j.cub.2021.12.014. PMC 8837273. PMID 34995490. S2CID 245772800.
Clare, Elizabeth L.; Economou, Chloe K.; Bennett, Frances J.; Dyer, Caitlin E.; Adams, Katherine; McRobie, Benjamin; Drinkwater, Rosie; Littlefair, Joanne E. (January 2022). "Measuring biodiversity from DNA in the air". Current Biology. 32 (3): 693–700.e5. Bibcode:2022CBio...32E.693C. doi:10.1016/j.cub.2021.11.064. PMID 34995488. S2CID 245772825.
Clare, Elizabeth L.; Economou, Chloe K.; Faulkes, Chris G.; Gilbert, James D.; Bennett, Frances; Drinkwater, Rosie; Littlefair, Joanne E. (2021). "EDNAir: Proof of concept that animal DNA can be collected from air sampling". PeerJ. 9: e11030. doi:10.7717/peerj.11030. PMC 8019316. PMID 33850648. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Métris, Kimberly L.; Métris, Jérémy (14 April 2023). "Aircraft surveys for air eDNA: probing biodiversity in the sky". PeerJ. 11: e15171. doi:10.7717/peerj.15171. ISSN 2167-8359. PMC 10108859. PMID 37077310.
Kenneth T. Frank; Brian Petrie; Jae S. Choi; William C. Leggett (2005). "Trophic Cascades in a Formerly Cod-Dominated Ecosystem". Science. 308 (5728): 1621–1623. Bibcode:2005Sci...308.1621F. doi:10.1126/science.1113075. PMID 15947186. S2CID 45088691.
Walters, Carl; Maguire, Jean-Jacques (1996). "Lessons for stock assessment from the northern cod collapse". Reviews in Fish Biology and Fisheries. 6 (2). doi:10.1007/BF00182340. S2CID 20224324.
ICES (2018). "NEAFC request on updated advice for cod (Gadus morhua) in Subdivision 5.b.1 (Faroe Plateau)" (PDF). doi:10.17895/ices.pub.4651. {{cite journal}}: Cite journal requires |journal= (help)
Pusceddu, A.; Bianchelli, S.; Martin, J.; Puig, P.; Palanques, A.; Masque, P.; Danovaro, R. (2014). "Chronic and intensive bottom trawling impairs deep-sea biodiversity and ecosystem functioning". Proceedings of the National Academy of Sciences. 111 (24): 8861–8866. Bibcode:2014PNAS..111.8861P. doi:10.1073/pnas.1405454111. PMC 4066481. PMID 24843122.
Arreguin-sanchez, Francisco (1996). "Catchability: A key parameter for fish stock assessment". Reviews in Fish Biology and Fisheries. 6 (2). doi:10.1007/BF00182344. S2CID 9589700.
Salter, Ian; Joensen, Mourits; Kristiansen, Regin; Steingrund, Petur; Vestergaard, Poul (2019). "Environmental DNA concentrations are correlated with regional biomass of Atlantic cod in oceanic waters". Communications Biology. 2: 461. doi:10.1038/s42003-019-0696-8. PMC 6904555. PMID 31840106. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Goldberg, Caren S.; Pilliod, David S.; Arkle, Robert S.; Waits, Lisette P. (2011). "Molecular Detection of Vertebrates in Stream Water: A Demonstration Using Rocky Mountain Tailed Frogs and Idaho Giant Salamanders". PLOS ONE. 6 (7): e22746. Bibcode:2011PLoSO...622746G. doi:10.1371/journal.pone.0022746. PMC 3144250. PMID 21818382.
Valentini, Alice; Taberlet, Pierre; Miaud, Claude; Civade, Raphaël; Herder, Jelger; Thomsen, Philip Francis; Bellemain, Eva; Besnard, Aurélien; Coissac, Eric; Boyer, Frédéric; Gaboriaud, Coline; Jean, Pauline; Poulet, Nicolas; Roset, Nicolas; Copp, Gordon H.; Geniez, Philippe; Pont, Didier; Argillier, Christine; Baudoin, Jean-Marc; Peroux, Tiphaine; Crivelli, Alain J.; Olivier, Anthony; Acqueberge, Manon; Le Brun, Matthieu; Møller, Peter R.; Willerslev, Eske; Dejean, Tony (2016). "Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding" (PDF). Molecular Ecology. 25 (4): 929–942. Bibcode:2016MolEc..25..929V. doi:10.1111/mec.13428. PMID 26479867. S2CID 2801412.
Goodwin, Kelly D.; Thompson, Luke R.; Duarte, Bernardo; Kahlke, Tim; Thompson, Andrew R.; Marques, João C.; Caçador, Isabel (2017). "DNA Sequencing as a Tool to Monitor Marine Ecological Status". Frontiers in Marine Science. 4. doi:10.3389/fmars.2017.00107. hdl:10453/125704. S2CID 27034312.
Stoeckle, Mark Y.; Soboleva, Lyubov; Charlop-Powers, Zachary (2017). "Aquatic environmental DNA detects seasonal fish abundance and habitat preference in an urban estuary". PLOS ONE. 12 (4): e0175186. Bibcode:2017PLoSO..1275186S. doi:10.1371/journal.pone.0175186. PMC 5389620. PMID 28403183.
Thomsen, Philip Francis; Kielgast, Jos; Iversen, Lars Lønsmann; Møller, Peter Rask; Rasmussen, Morten; Willerslev, Eske (2012). "Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples". PLOS ONE. 7 (8): e41732. Bibcode:2012PLoSO...741732T. doi:10.1371/journal.pone.0041732. PMC 3430657. PMID 22952584.
Thomsen, Philip Francis; Møller, Peter Rask; Sigsgaard, Eva Egelyng; Knudsen, Steen Wilhelm; Jørgensen, Ole Ankjær; Willerslev, Eske (2016). "Environmental DNA from Seawater Samples Correlate with Trawl Catches of Subarctic, Deepwater Fishes". PLOS ONE. 11 (11): e0165252. Bibcode:2016PLoSO..1165252T. doi:10.1371/journal.pone.0165252. PMC 5112899. PMID 27851757.
Sigsgaard, Eva Egelyng; Nielsen, Ida Broman; Carl, Henrik; Krag, Marcus Anders; Knudsen, Steen Wilhelm; Xing, Yingchun; Holm-Hansen, Tore Hejl; Møller, Peter Rask; Thomsen, Philip Francis (2017). "Seawater environmental DNA reflects seasonality of a coastal fish community". Marine Biology. 164 (6): 128. Bibcode:2017MarBi.164..128S. doi:10.1007/s00227-017-3147-4. S2CID 89773962.
Takahara, Teruhiko; Minamoto, Toshifumi; Yamanaka, Hiroki; Doi, Hideyuki; Kawabata, Zen'Ichiro (2012). "Estimation of Fish Biomass Using Environmental DNA". PLOS ONE. 7 (4): e35868. Bibcode:2012PLoSO...735868T. doi:10.1371/journal.pone.0035868. PMC 3338542. PMID 22563411.
Doi, Hideyuki; Uchii, Kimiko; Takahara, Teruhiko; Matsuhashi, Saeko; Yamanaka, Hiroki; Minamoto, Toshifumi (2015). "Use of Droplet Digital PCR for Estimation of Fish Abundance and Biomass in Environmental DNA Surveys". PLOS ONE. 10 (3): e0122763. Bibcode:2015PLoSO..1022763D. doi:10.1371/journal.pone.0122763. PMC 4370432. PMID 25799582.
Lacoursière-Roussel, Anaïs; Rosabal, Maikel; Bernatchez, Louis (2016). "Estimating fish abundance and biomass from eDNA concentrations: Variability among capture methods and environmental conditions". Molecular Ecology Resources. 16 (6): 1401–1414. doi:10.1111/1755-0998.12522. PMID 26946353. S2CID 4507565.
Maruyama, Atsushi; Nakamura, Keisuke; Yamanaka, Hiroki; Kondoh, Michio; Minamoto, Toshifumi (2014). "The Release Rate of Environmental DNA from Juvenile and Adult Fish". PLOS ONE. 9 (12): e114639. Bibcode:2014PLoSO...9k4639M. doi:10.1371/journal.pone.0114639. PMC 4257714. PMID 25479160.
Klymus, Katy E.; Richter, Catherine A.; Chapman, Duane C.; Paukert, Craig (2015). "Quantification of eDNA shedding rates from invasive bighead carp Hypophthalmichthys nobilis and silver carp Hypophthalmichthys molitrix". Biological Conservation. 183: 77–84. Bibcode:2015BCons.183...77K. doi:10.1016/j.biocon.2014.11.020.
Li, Jianlong; Lawson Handley, Lori J.; Harper, Lynsey R.; Brys, Rein; Watson, Hayley V.; Di Muri, Cristina; Zhang, Xiang; Hänfling, Bernd (2019). "Limited dispersion and quick degradation of environmental DNA in fish ponds inferred by metabarcoding". Environmental DNA. 1 (3): 238–250. doi:10.1002/edn3.24. S2CID 198403033.
Salter, Ian (2018). "Seasonal variability in the persistence of dissolved environmental DNA (EDNA) in a marine system: The role of microbial nutrient limitation". PLOS ONE. 13 (2): e0192409. Bibcode:2018PLoSO..1392409S. doi:10.1371/journal.pone.0192409. PMC 5825020. PMID 29474423.
Buxton, Andrew S.; Groombridge, Jim J.; Griffiths, Richard A. (2018). "Seasonal variation in environmental DNA detection in sediment and water samples". PLOS ONE. 13 (1): e0191737. Bibcode:2018PLoSO..1391737B. doi:10.1371/journal.pone.0191737. PMC 5774844. PMID 29352294.
Collins, Rupert A.; Wangensteen, Owen S.; o'Gorman, Eoin J.; Mariani, Stefano; Sims, David W.; Genner, Martin J. (2018). "Persistence of environmental DNA in marine systems". Communications Biology. 1: 185. doi:10.1038/s42003-018-0192-6. PMC 6218555. PMID 30417122.
Andruszkiewicz, Elizabeth A.; Koseff, Jeffrey R.; Fringer, Oliver B.; Ouellette, Nicholas T.; Lowe, Anna B.; Edwards, Christopher A.; Boehm, Alexandria B. (2019). "Modeling Environmental DNA Transport in the Coastal Ocean Using Lagrangian Particle Tracking". Frontiers in Marine Science. 6. doi:10.3389/fmars.2019.00477. S2CID 199447701.
Eichmiller, Jessica J.; Bajer, Przemyslaw G.; Sorensen, Peter W. (2014). "The Relationship between the Distribution of Common Carp and Their Environmental DNA in a Small Lake". PLOS ONE. 9 (11): e112611. Bibcode:2014PLoSO...9k2611E. doi:10.1371/journal.pone.0112611. PMC 4226586. PMID 25383965.
Gargan, Laura M.; Morato, Telmo; Pham, Christopher K.; Finarelli, John A.; Carlsson, Jeanette E. L.; Carlsson, Jens (2017). "Development of a sensitive detection method to survey pelagic biodiversity using eDNA and quantitative PCR: A case study of devil ray at seamounts". Marine Biology. 164 (5): 112. Bibcode:2017MarBi.164..112G. doi:10.1007/s00227-017-3141-x. S2CID 91149351.
Yamamoto, Satoshi; Minami, Kenji; Fukaya, Keiichi; Takahashi, Kohji; Sawada, Hideki; Murakami, Hiroaki; Tsuji, Satsuki; Hashizume, Hiroki; Kubonaga, Shou; Horiuchi, Tomoya; Hongo, Masamichi; Nishida, Jo; Okugawa, Yuta; Fujiwara, Ayaka; Fukuda, Miho; Hidaka, Shunsuke; Suzuki, Keita W.; Miya, Masaki; Araki, Hitoshi; Yamanaka, Hiroki; Maruyama, Atsushi; Miyashita, Kazushi; Masuda, Reiji; Minamoto, Toshifumi; Kondoh, Michio (2016). "Environmental DNA as a 'Snapshot' of Fish Distribution: A Case Study of Japanese Jack Mackerel in Maizuru Bay, Sea of Japan". PLOS ONE. 11 (3): e0149786. Bibcode:2016PLoSO..1149786Y. doi:10.1371/journal.pone.0149786. PMC 4775019. PMID 26933889. S2CID 5168061.
Knudsen, Steen Wilhelm; Ebert, Rasmus Bach; Hesselsøe, Martin; Kuntke, Franziska; Hassingboe, Jakob; Mortensen, Peter Bondgaard; Thomsen, Philip Francis; Sigsgaard, Eva Egelyng; Hansen, Brian Klitgaard; Nielsen, Einar Eg; Møller, Peter Rask (2019). "Species-specific detection and quantification of environmental DNA from marine fishes in the Baltic Sea". Journal of Experimental Marine Biology and Ecology. 510: 31–45. doi:10.1016/j.jembe.2018.09.004. S2CID 92601423.
Corinaldesi, C.; Tangherlini, M.; Manea, E.; Dell'Anno, A. (2018). "Extracellular DNA as a genetic recorder of microbial diversity in benthic deep-sea ecosystems". Scientific Reports. 8 (1): 1839. Bibcode:2018NatSR...8.1839C. doi:10.1038/s41598-018-20302-7. PMC 5789842. PMID 29382896. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Dell'Anno, A.; Danovaro, R. (2005). "Extracellular DNA Plays a Key Role in Deep-Sea Ecosystem Functioning". Science. 309 (5744): 2179. doi:10.1126/science.1117475. PMID 16195451. S2CID 39216262.
Corinaldesi, Cinzia; Dell'Anno, Antonio; Danovaro, Roberto (2007). "Viral infection plays a key role in extracellular DNA dynamics in marine anoxic systems". Limnology and Oceanography. 52 (2): 508–516. Bibcode:2007LimOc..52..508C. doi:10.4319/lo.2007.52.2.0508. S2CID 85601366.
Dell'Anno, Antonio; Corinaldesi, Cinzia; Danovaro, Roberto (2015). "Virus decomposition provides an important contribution to benthic deep-sea ecosystem functioning". Proceedings of the National Academy of Sciences. 112 (16): E2014–E2019. Bibcode:2015PNAS..112E2014D. doi:10.1073/pnas.1422234112. PMC 4413343. PMID 25848024.
Nielsen, Kaare M.; Johnsen, Pål J.; Bensasson, Douda; Daffonchio, Daniele (2007). "Release and persistence of extracellular DNA in the environment". Environmental Biosafety Research. 6 (1–2): 37–53. doi:10.1051/ebr:2007031. PMID 17961479.
Coolen, Marco J. L.; Overmann, Jörg (1998). "Analysis of Subfossil Molecular Remains of Purple Sulfur Bacteria in a Lake Sediment". Applied and Environmental Microbiology. 64 (11): 4513–4521. Bibcode:1998ApEnM..64.4513C. doi:10.1128/AEM.64.11.4513-4521.1998. PMC 106678. PMID 9797316.
Coolen, M.; Muyzer, Gerard; Rijpstra, W. Irene C.; Schouten, Stefan; Volkman, John K.; Sinninghe Damsté, Jaap S. (2004). "Combined DNA and lipid analyses of sediments reveal changes in Holocene haptophyte and diatom populations in an Antarctic lake". Earth and Planetary Science Letters. 223 (1–2): 225–239. Bibcode:2004E&PSL.223..225C. doi:10.1016/j.epsl.2004.04.014.
Coolen, M. J. L.; Orsi, W. D.; Balkema, C.; Quince, C.; Harris, K.; Sylva, S. P.; Filipova-Marinova, M.; Giosan, L. (2013). "Evolution of the plankton paleome in the Black Sea from the Deglacial to Anthropocene". Proceedings of the National Academy of Sciences. 110 (21): 8609–8614. Bibcode:2013PNAS..110.8609C. doi:10.1073/pnas.1219283110. PMC 3666672. PMID 23650351.
Corinaldesi, C.; Tangherlini, M.; Luna, G. M.; Dell'Anno, A. (2014). "Extracellular DNA can preserve the genetic signatures of present and past viral infection events in deep hypersaline anoxic basins". Proceedings of the Royal Society B: Biological Sciences. 281 (1780). doi:10.1098/rspb.2013.3299. PMC 4027399. PMID 24523277. S2CID 1214760.
Boere, Arjan C.; Rijpstra, W. Irene C.; De Lange, Gert J.; Malinverno, Elisa; Sinninghe Damsté, Jaap S.; Coolen, Marco J. L. (2011). "Exploring preserved fossil dinoflagellate and haptophyte DNA signatures to infer ecological and environmental changes during deposition of sapropel S1 in the eastern Mediterranean" (PDF). Paleoceanography. 26 (2): n/a. Bibcode:2011PalOc..26.2204B. doi:10.1029/2010PA001948. S2CID 53599204.
Coolen, M. J. L.; Cypionka, H.; Sass, A. M.; Sass, H.; Overmann, J. (2002). "Ongoing Modification of Mediterranean Pleistocene Sapropels Mediated by Prokaryotes". Science. 296 (5577): 2407–2410. Bibcode:2002Sci...296.2407C. doi:10.1126/science.1071893. PMID 12089447. S2CID 33722848.
Coolen, Marco J. L.; Overmann, Jörg (2007). "217 000-year-old DNA sequences of green sulfur bacteria in Mediterranean sapropels and their implications for the reconstruction of the paleoenvironment". Environmental Microbiology. 9 (1): 238–249. doi:10.1111/j.1462-2920.2006.01134.x. hdl:1912/1506. PMID 17227428.
Coolen, Marco J. L.; Volkman, John K.; Abbas, Ben; Muyzer, Gerard; Schouten, Stefan; Sinninghe Damsté, Jaap S. (2007). "Identification of organic matter sources in sulfidic late Holocene Antarctic fjord sediments from fossil rDNA sequence analysis". Paleoceanography. 22 (2): PA2211. Bibcode:2007PalOc..22.2211C. doi:10.1029/2006PA001309. hdl:1912/3447.
Coolen, Marco J.L.; Saenz, James P.; Giosan, Liviu; Trowbridge, Nan Y.; Dimitrov, Petko; Dimitrov, Dimitar; Eglinton, Timothy I. (2009). "DNA and lipid molecular stratigraphic records of haptophyte succession in the Black Sea during the Holocene". Earth and Planetary Science Letters. 284 (3–4): 610–621. Bibcode:2009E&PSL.284..610C. doi:10.1016/j.epsl.2009.05.029.
Dell'Anno, Antonio; Corinaldesi, Cinzia; Stavrakakis, Spyros; Lykousis, Vasilis; Danovaro, Roberto (2005). "Pelagic-Benthic Coupling and Diagenesis of Nucleic Acids in a Deep-Sea Continental Margin and an Open-Slope System of the Eastern Mediterranean". Applied and Environmental Microbiology. 71 (10): 6070–6076. Bibcode:2005ApEnM..71.6070D. doi:10.1128/AEM.71.10.6070-6076.2005. PMC 1265925. PMID 16204523.
Levin, Lisa A.; Liu, Kon-Kee; Emeis, Kay-Christian; Breitburg, Denise L.; Cloern, James; Deutsch, Curtis; Giani, Michele; Goffart, Anne; Hofmann, Eileen E.; Lachkar, Zouhair; Limburg, Karin; Liu, Su-Mei; Montes, Enrique; Naqvi, Wajih; Ragueneau, Olivier; Rabouille, Christophe; Sarkar, Santosh Kumar; Swaney, Dennis P.; Wassman, Paul; Wishner, Karen F. (2015). "Comparative biogeochemistry–ecosystem–human interactions on dynamic continental margins". Journal of Marine Systems. 141: 3–17. Bibcode:2015JMS...141....3L. doi:10.1016/j.jmarsys.2014.04.016. S2CID 7139186.
Jørgensen, Bo Barker; Boetius, Antje (2007). "Feast and famine — microbial life in the deep-sea bed". Nature Reviews Microbiology. 5 (10): 770–781. doi:10.1038/nrmicro1745. PMID 17828281. S2CID 22970703.
Orcutt, B. N.; Sylvan, J. B.; Knab, N. J.; Edwards, K. J. (2011). "Microbial Ecology of the Dark Ocean above, at, and below the Seafloor". Microbiology and Molecular Biology Reviews. 75 (2): 361–422. doi:10.1128/MMBR.00039-10. PMC 3122624. PMID 21646433.
Corinaldesi, Cinzia (2015). "New perspectives in benthic deep-sea microbial ecology". Frontiers in Marine Science. 2. doi:10.3389/fmars.2015.00017. S2CID 2350681.
Zinger, Lucie; Amaral-Zettler, Linda A.; Fuhrman, Jed A.; Horner-Devine, M. Claire; Huse, Susan M.; Welch, David B. Mark; Martiny, Jennifer B. H.; Sogin, Mitchell; Boetius, Antje; Ramette, Alban (2011). "Global Patterns of Bacterial Beta-Diversity in Seafloor and Seawater Ecosystems". PLOS ONE. 6 (9): e24570. Bibcode:2011PLoSO...624570Z. doi:10.1371/journal.pone.0024570. PMC 3169623. PMID 21931760.
Bienhold, Christina; Boetius, Antje; Ramette, Alban (2012). "The energy–diversity relationship of complex bacterial communities in Arctic deep-sea sediments". The ISME Journal. 6 (4): 724–732. Bibcode:2012ISMEJ...6..724B. doi:10.1038/ismej.2011.140. PMC 3309351. PMID 22071347.
Zinger, L.; Boetius, A.; Ramette, A. (2014). "Bacterial taxa–area and distance–decay relationships in marine environments". Molecular Ecology. 23 (4): 954–964. Bibcode:2014MolEc..23..954Z. doi:10.1111/mec.12640. PMC 4230465. PMID 24460915.
Drummond, Alexei J.; Newcomb, Richard D.; Buckley, Thomas R.; Xie, Dong; Dopheide, Andrew; Potter, Benjamin CM; Heled, Joseph; Ross, Howard A.; Tooman, Leah; Grosser, Stefanie; Park, Duckchul; Demetras, Nicholas J.; Stevens, Mark I.; Russell, James C.; Anderson, Sandra H.; Carter, Anna; Nelson, Nicola (2015). "Evaluating a multigene environmental DNA approach for biodiversity assessment". GigaScience. 4: 46. doi:10.1186/s13742-015-0086-1. PMC 4595072. PMID 26445670. S2CID 28846124.
Corinaldesi, C.; Beolchini, F.; Dell'Anno, A. (2008). "Damage and degradation rates of extracellular DNA in marine sediments: Implications for the preservation of gene sequences". Molecular Ecology. 17 (17): 3939–3951. Bibcode:2008MolEc..17.3939C. doi:10.1111/j.1365-294X.2008.03880.x. PMID 18643876. S2CID 22062643.
Pedersen, Mikkel Winther; Overballe-Petersen, Søren; Ermini, Luca; Sarkissian, Clio Der; Haile, James; Hellstrom, Micaela; Spens, Johan; Thomsen, Philip Francis; Bohmann, Kristine; Cappellini, Enrico; Schnell, Ida Bærholm; Wales, Nathan A.; Carøe, Christian; Campos, Paula F.; Schmidt, Astrid M. Z.; Gilbert, M. Thomas P.; Hansen, Anders J.; Orlando, Ludovic; Willerslev, Eske (2015). "Ancient and modern environmental DNA". Philosophical Transactions of the Royal Society B: Biological Sciences. 370 (1660). doi:10.1098/rstb.2013.0383. PMC 4275890. PMID 25487334.
Parducci, Laura; Bennett, Keith D.; Ficetola, Gentile Francesco; Alsos, Inger Greve; Suyama, Yoshihisa; Wood, Jamie R.; Pedersen, Mikkel Winther (2017). "Ancient plant DNA in lake sediments". New Phytologist. 214 (3): 924–942. doi:10.1111/nph.14470. hdl:10023/13063. PMID 28370025.
Armbrecht, Linda H.; Coolen, Marco J.L.; Lejzerowicz, Franck; George, Simon C.; Negandhi, Karita; Suzuki, Yohey; Young, Jennifer; Foster, Nicole R.; Armand, Leanne K.; Cooper, Alan; Ostrowski, Martin; Focardi, Amaranta; Stat, Michael; Moreau, John W.; Weyrich, Laura S. (2019). "Ancient DNA from marine sediments: Precautions and considerations for seafloor coring, sample handling and data generation". Earth-Science Reviews. 196: 102887. Bibcode:2019ESRv..19602887A. doi:10.1016/j.earscirev.2019.102887. hdl:10453/134221. S2CID 198406152.
De Vargas, C.; et al. (2015). "Eukaryotic plankton diversity in the sunlit ocean". Science. 348 (6237). doi:10.1126/science.1261605. hdl:10261/117736. PMID 25999516. S2CID 12853481.
Iversen, M. H.; Ploug, H. (2010). "Ballast minerals and the sinking carbon flux in the ocean: Carbon-specific respiration rates and sinking velocity of marine snow aggregates". Biogeosciences. 7 (9): 2613–2624. Bibcode:2010BGeo....7.2613I. doi:10.5194/bg-7-2613-2010.
Takahashi, Kozo; Be, Allan W.H. (1984). "Planktonic foraminifera: Factors controlling sinking speeds". Deep Sea Research Part A. Oceanographic Research Papers. 31 (12): 1477–1500. Bibcode:1984DSRA...31.1477T. doi:10.1016/0198-0149(84)90083-9.
De Schepper, Stijn; Ray, Jessica L.; Skaar, Katrine Sandnes; Sadatzki, Henrik; Ijaz, Umer Z.; Stein, Ruediger; Larsen, Aud (2019). "The potential of sedimentary ancient DNA for reconstructing past sea ice evolution". The ISME Journal. 13 (10): 2566–2577. Bibcode:2019ISMEJ..13.2566D. doi:10.1038/s41396-019-0457-1. PMC 6776040. PMID 31235841.
Barrenechea Angeles, Inès; Lejzerowicz, Franck; Cordier, Tristan; Scheplitz, Janin; Kucera, Michal; Ariztegui, Daniel; Pawlowski, Jan; Morard, Raphaël (2020). "Planktonic foraminifera eDNA signature deposited on the seafloor remains preserved after burial in marine sediments". Scientific Reports. 10 (1): 20351. doi:10.1038/s41598-020-77179-8. PMC 7684305. PMID 33230106. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Briggs, Lisa (2020). "Ancient DNA Research in Maritime and Underwater Archaeology: Pitfalls, Promise, and Future Directions". Open Quaternary. 6. doi:10.5334/oq.71. S2CID 213677121.
Morard, Raphaël; Lejzerowicz, Franck; Darling, Kate F.; Lecroq-Bennet, Béatrice; Winther Pedersen, Mikkel; Orlando, Ludovic; Pawlowski, Jan; Mulitza, Stefan; De Vargas, Colomban; Kucera, Michal (2017). "Planktonic foraminifera-derived environmental DNA extracted from abyssal sediments preserves patterns of plankton macroecology". Biogeosciences. 14 (11): 2741–2754. Bibcode:2017BGeo...14.2741M. doi:10.5194/bg-14-2741-2017. hdl:10023/11053. S2CID 55213856.
Corinaldesi, C.; Beolchini, F.; Dell'Anno, A. (2008). "Damage and degradation rates of extracellular DNA in marine sediments: Implications for the preservation of gene sequences". Molecular Ecology. 17 (17): 3939–3951. Bibcode:2008MolEc..17.3939C. doi:10.1111/j.1365-294X.2008.03880.x. PMID 18643876. S2CID 22062643.
Corinaldesi, Cinzia; Dell'Anno, Antonio; Danovaro, Roberto (2007). "Early diagenesis and trophic role of extracellular DNA in different benthic ecosystems". Limnology and Oceanography. 52 (4): 1710–1717. Bibcode:2007LimOc..52.1710C. doi:10.4319/lo.2007.52.4.1710. S2CID 53631156.
Corinaldesi, C.; Barucca, M.; Luna, G. M.; Dell'Anno, A. (2011). "Preservation, origin and genetic imprint of extracellular DNA in permanently anoxic deep-sea sediments". Molecular Ecology. 20 (3): 642–654. Bibcode:2011MolEc..20..642C. doi:10.1111/j.1365-294X.2010.04958.x. PMID 21155913. S2CID 22920579.
Guillou, Laure; et al. (2012). "The Protist Ribosomal Reference database (PR2): A catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy". Nucleic Acids Research. 41 (Database issue): D597–D604. doi:10.1093/nar/gks1160. PMC 3531120. PMID 23193267.
Morard, Raphaël; Darling, Kate F.; Mahé, Frédéric; Audic, Stéphane; Ujiié, Yurika; Weiner, Agnes K. M.; André, Aurore; Seears, Heidi A.; Wade, Christopher M.; Quillévéré, Frédéric; Douady, Christophe J.; Escarguel, Gilles; De Garidel-Thoron, Thibault; Siccha, Michael; Kucera, Michal; De Vargas, Colomban (2015). "PFR2: A curated database of planktonic foraminifera 18S ribosomal DNA as a resource for studies of plankton ecology, biogeography and evolution" (PDF). Molecular Ecology Resources. 15 (6): 1472–1485. doi:10.1111/1755-0998.12410. PMID 25828689. S2CID 39066123.
Morard, Raphaël; Vollmar, Nele M.; Greco, Mattia; Kucera, Michal (2019). "Unassigned diversity of planktonic foraminifera from environmental sequencing revealed as known but neglected species". PLOS ONE. 14 (3): e0213936. Bibcode:2019PLoSO..1413936M. doi:10.1371/journal.pone.0213936. PMC 6428320. PMID 30897140.
Rutherford, Scott; d'Hondt, Steven; Prell, Warren (1999). "Environmental controls on the geographic distribution of zooplankton diversity". Nature. 400 (6746): 749–753. Bibcode:1999Natur.400..749R. doi:10.1038/23449. S2CID 4418045.
Siccha, Michael; Kucera, Michal (2017). "ForCenS, a curated database of planktonic foraminifera census counts in marine surface sediment samples". Scientific Data. 4: 170109. Bibcode:2017NatSD...470109S. doi:10.1038/sdata.2017.109. PMC 5566098. PMID 28829434.
Lejzerowicz, Franck; Esling, Philippe; Majewski, Wojciech; Szczuciński, Witold; Decelle, Johan; Obadia, Cyril; Arbizu, Pedro Martinez; Pawlowski, Jan (2013). "Ancient DNA complements microfossil record in deep-sea subsurface sediments". Biology Letters. 9 (4). doi:10.1098/rsbl.2013.0283. PMC 3730641. PMID 23658006.
Pawłowska, J.; Lejzerowicz, F.; Esling, P.; Szczuciński, W.; Zajączkowski, M.; Pawlowski, J. (2014). "Ancient DNA sheds new light on the Svalbard foraminiferal fossil record of the last millennium". Geobiology. 12 (4): 277–288. Bibcode:2014Gbio...12..277P. doi:10.1111/gbi.12087. PMID 24730667. S2CID 205140049.
Pawłowska, Joanna; Zajączkowski, Marek; Łącka, Magdalena; Lejzerowicz, Franck; Esling, Philippe; Pawlowski, Jan (2016). "Palaeoceanographic changes in Hornsund Fjord (Spitsbergen, Svalbard) over the last millennium: New insights from ancient DNA". Climate of the Past. 12 (7): 1459–1472. Bibcode:2016CliPa..12.1459P. doi:10.5194/cp-12-1459-2016. S2CID 43985949.
Szczuciński, Witold; Pawłowska, Joanna; Lejzerowicz, Franck; Nishimura, Yuichi; Kokociński, Mikołaj; Majewski, Wojciech; Nakamura, Yugo; Pawlowski, Jan (2016). "Ancient sedimentary DNA reveals past tsunami deposits". Marine Geology. 381: 29–33. Bibcode:2016MGeol.381...29S. doi:10.1016/j.margeo.2016.08.006.
Nunn, Jack (2020). "Science for All - Publicly funded research report (June 2018-December 2019)". Figshare. doi:10.26181/5eba630a64e08.

freshwaterhabitats.org.uk

"What is eDNA?". Freshwater Habitats Trust.

handle.net

hdl.handle.net

Stewart, Kathryn A. (1 April 2019). "Understanding the effects of biotic and abiotic factors on sources of aquatic environmental DNA". Biodiversity and Conservation. 28 (5): 983–1001. Bibcode:2019BiCon..28..983S. doi:10.1007/s10531-019-01709-8. hdl:11245.1/1caeb8dd-3d0b-493c-90dd-c180c9c8f21c. ISSN 1572-9710. S2CID 61811470.
Qu, Chanjuan; Stewart, Kathryn A. (18 February 2019). "Evaluating monitoring options for conservation: comparing traditional and environmental DNA tools for a critically endangered mammal". The Science of Nature. 106 (3): 9. Bibcode:2019SciNa.106....9Q. doi:10.1007/s00114-019-1605-1. hdl:11245.1/d02ea724-b763-42b2-8f97-696ef88db996. ISSN 1432-1904. PMID 30778682. S2CID 66881381.
Barnes, Matthew A.; Turner, Cameron R. (2016). "The ecology of environmental DNA and implications for conservation genetics". Conservation Genetics. 17 (1): 1–17. Bibcode:2016ConG...17....1B. doi:10.1007/s10592-015-0775-4. hdl:2346/87600. S2CID 14914544.
Goldberg, Caren S.; Turner, Cameron R.; Deiner, Kristy; Klymus, Katy E.; Thomsen, Philip Francis; Murphy, Melanie A.; Spear, Stephen F.; McKee, Anna; Oyler-Mccance, Sara J.; Cornman, Robert Scott; Laramie, Matthew B.; Mahon, Andrew R.; Lance, Richard F.; Pilliod, David S.; Strickler, Katherine M.; Waits, Lisette P.; Fremier, Alexander K.; Takahara, Teruhiko; Herder, Jelger E.; Taberlet, Pierre (2016). "Critical considerations for the application of environmental DNA methods to detect aquatic species". Methods in Ecology and Evolution. 7 (11): 1299–1307. Bibcode:2016MEcEv...7.1299G. doi:10.1111/2041-210X.12595. hdl:20.500.11850/502281. S2CID 89432389.
Deiner, Kristy; Bik, Holly M.; Mächler, Elvira; Seymour, Mathew; Lacoursière-Roussel, Anaïs; Altermatt, Florian; Creer, Simon; Bista, Iliana; Lodge, David M.; Vere, Natasha; Pfrender, Michael E.; Bernatchez, Louis (2017). "Environmental DNA metabarcoding: Transforming how we survey animal and plant communities". Molecular Ecology. 26 (21): 5872–5895. Bibcode:2017MolEc..26.5872D. doi:10.1111/mec.14350. hdl:20.500.11850/455284. PMID 28921802. S2CID 8001074.
Creer, Simon; Deiner, Kristy; Frey, Serita; Porazinska, Dorota; Taberlet, Pierre; Thomas, W. Kelley; Potter, Caitlin; Bik, Holly M. (2016). "The ecologist's field guide to sequence-based identification of biodiversity". Methods in Ecology and Evolution. 7 (9): 1008–1018. Bibcode:2016MEcEv...7.1008C. doi:10.1111/2041-210X.12574. hdl:20.500.11850/125378. S2CID 87512991.
Banerjee, Pritam; Stewart, Kathryn A.; Antognazza, Caterina M.; Bunholi, Ingrid V.; Deiner, Kristy; Barnes, Matthew A.; Saha, Santanu; Verdier, Héloïse; Doi, Hideyuki; Maity, Jyoti Prakash; Chan, Michael W.Y.; Chen, Chien Yen (2022). "Plant–animal interactions in the era of environmental DNA (eDNA)—A review". Environmental DNA. 4 (5): 987–999. doi:10.1002/edn3.308. hdl:11383/2137932. S2CID 248977497.
Yu, Douglas W.; Ji, Yinqiu; Emerson, Brent C.; Wang, Xiaoyang; Ye, Chengxi; Yang, Chunyan; Ding, Zhaoli (2012). "Biodiversity soup: Metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring". Methods in Ecology and Evolution. 3 (4): 613–623. Bibcode:2012MEcEv...3..613Y. doi:10.1111/j.2041-210X.2012.00198.x. hdl:10261/193380. S2CID 83095866.
Bass, David (2015). "Diverse Applications of Environmental DNA Methods in Parasitology". Trends in Parasitology. 31 (10): 499–513. doi:10.1016/j.pt.2015.06.013. hdl:20.500.11850/105112. PMID 26433253.
Tedersoo, Leho; Bahram, Mohammad; Põlme, Sergei; Kõljalg, Urmas; Yorou, Nourou S.; Wijesundera, Ravi; Ruiz, Luis Villarreal; Vasco-Palacios, Aída M.; Thu, Pham Quang (28 November 2014). "Global diversity and geography of soil fungi" (PDF). Science. 346 (6213): 1256688. doi:10.1126/science.1256688. hdl:10447/102930. ISSN 0036-8075. PMID 25430773. S2CID 206559506.
Williams, Molly-Ann; O'Grady, Joyce; Ball, Bernard; Carlsson, Jens; Eyto, Elvira de; McGinnity, Philip; Jennings, Eleanor; Regan, Fiona; Parle-McDermott, Anne (2019). "The application of CRISPR-Cas for single species identification from environmental DNA". Molecular Ecology Resources. 19 (5): 1106–1114. doi:10.1111/1755-0998.13045. hdl:10468/8053. ISSN 1755-0998. PMID 31177615. S2CID 182949780.
Wheeler, Q. D.; Raven, P. H.; Wilson, E. O. (2004). "Taxonomy: Impediment or Expedient?". Science. 303 (5656): 285. doi:10.1126/science.303.5656.285. hdl:1808/295. PMID 14726557. S2CID 27481787.
Arribas, Paula; Andújar, Carmelo; Hopkins, Kevin; Shepherd, Matthew; Vogler, Alfried P. (2016). "Metabarcoding and mitochondrial metagenomics of endogean arthropods to unveil the mesofauna of the soil". Methods in Ecology and Evolution. 7 (9): 1071–1081. Bibcode:2016MEcEv...7.1071A. doi:10.1111/2041-210X.12557. hdl:10044/1/49935. S2CID 51899316.
Blake, Max; McKeown, Niall J.; Bushell, Mark L. T.; Shaw, Paul W. (2016). "DNA extraction from spider webs". Conservation Genetics Resources. 8 (3): 219–221. Bibcode:2016ConGR...8..219B. doi:10.1007/s12686-016-0537-8. hdl:2160/43510. S2CID 15122457.
Goodwin, Kelly D.; Thompson, Luke R.; Duarte, Bernardo; Kahlke, Tim; Thompson, Andrew R.; Marques, João C.; Caçador, Isabel (2017). "DNA Sequencing as a Tool to Monitor Marine Ecological Status". Frontiers in Marine Science. 4. doi:10.3389/fmars.2017.00107. hdl:10453/125704. S2CID 27034312.
Coolen, Marco J. L.; Overmann, Jörg (2007). "217 000-year-old DNA sequences of green sulfur bacteria in Mediterranean sapropels and their implications for the reconstruction of the paleoenvironment". Environmental Microbiology. 9 (1): 238–249. doi:10.1111/j.1462-2920.2006.01134.x. hdl:1912/1506. PMID 17227428.
Coolen, Marco J. L.; Volkman, John K.; Abbas, Ben; Muyzer, Gerard; Schouten, Stefan; Sinninghe Damsté, Jaap S. (2007). "Identification of organic matter sources in sulfidic late Holocene Antarctic fjord sediments from fossil rDNA sequence analysis". Paleoceanography. 22 (2): PA2211. Bibcode:2007PalOc..22.2211C. doi:10.1029/2006PA001309. hdl:1912/3447.
Parducci, Laura; Bennett, Keith D.; Ficetola, Gentile Francesco; Alsos, Inger Greve; Suyama, Yoshihisa; Wood, Jamie R.; Pedersen, Mikkel Winther (2017). "Ancient plant DNA in lake sediments". New Phytologist. 214 (3): 924–942. doi:10.1111/nph.14470. hdl:10023/13063. PMID 28370025.
Armbrecht, Linda H.; Coolen, Marco J.L.; Lejzerowicz, Franck; George, Simon C.; Negandhi, Karita; Suzuki, Yohey; Young, Jennifer; Foster, Nicole R.; Armand, Leanne K.; Cooper, Alan; Ostrowski, Martin; Focardi, Amaranta; Stat, Michael; Moreau, John W.; Weyrich, Laura S. (2019). "Ancient DNA from marine sediments: Precautions and considerations for seafloor coring, sample handling and data generation". Earth-Science Reviews. 196: 102887. Bibcode:2019ESRv..19602887A. doi:10.1016/j.earscirev.2019.102887. hdl:10453/134221. S2CID 198406152.
De Vargas, C.; et al. (2015). "Eukaryotic plankton diversity in the sunlit ocean". Science. 348 (6237). doi:10.1126/science.1261605. hdl:10261/117736. PMID 25999516. S2CID 12853481.
Morard, Raphaël; Lejzerowicz, Franck; Darling, Kate F.; Lecroq-Bennet, Béatrice; Winther Pedersen, Mikkel; Orlando, Ludovic; Pawlowski, Jan; Mulitza, Stefan; De Vargas, Colomban; Kucera, Michal (2017). "Planktonic foraminifera-derived environmental DNA extracted from abyssal sediments preserves patterns of plankton macroecology". Biogeosciences. 14 (11): 2741–2754. Bibcode:2017BGeo...14.2741M. doi:10.5194/bg-14-2741-2017. hdl:10023/11053. S2CID 55213856.

harvard.edu

ui.adsabs.harvard.edu

Thomsen, Philip Francis; Sigsgaard, Eva E. (2019). "Environmental DNA metabarcoding of wild flowers reveals diverse communities of terrestrial arthropods". Ecology and Evolution. 9 (4): 1665–1679. Bibcode:2019EcoEv...9.1665T. doi:10.1002/ece3.4809. PMC 6392377. PMID 30847063. S2CID 71143282. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Stewart, Kathryn A. (1 April 2019). "Understanding the effects of biotic and abiotic factors on sources of aquatic environmental DNA". Biodiversity and Conservation. 28 (5): 983–1001. Bibcode:2019BiCon..28..983S. doi:10.1007/s10531-019-01709-8. hdl:11245.1/1caeb8dd-3d0b-493c-90dd-c180c9c8f21c. ISSN 1572-9710. S2CID 61811470.
Fahner, Nicole (2016). "Large-Scale Monitoring of Plants through Environmental DNA Metabarcoding of Soil: Recovery, Resolution, and Annotation of Four DNA Markers". PLOS ONE. 11 (6): 1–16. Bibcode:2016PLoSO..1157505F. doi:10.1371/journal.pone.0157505. ISSN 1932-6203. PMC 4911152. PMID 27310720 – via Directory of Open Access Journals.
Qu, Chanjuan; Stewart, Kathryn A. (18 February 2019). "Evaluating monitoring options for conservation: comparing traditional and environmental DNA tools for a critically endangered mammal". The Science of Nature. 106 (3): 9. Bibcode:2019SciNa.106....9Q. doi:10.1007/s00114-019-1605-1. hdl:11245.1/d02ea724-b763-42b2-8f97-696ef88db996. ISSN 1432-1904. PMID 30778682. S2CID 66881381.
Thomsen, Philip Francis; Willerslev, Eske (1 March 2015). "Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity". Biological Conservation. Special Issue: Environmental DNA: A powerful new tool for biological conservation. 183: 4–18. Bibcode:2015BCons.183....4T. doi:10.1016/j.biocon.2014.11.019.
Kjær, Kurt H.; et al. (7 December 2022). "A 2-million-year-old ecosystem in Greenland uncovered by environmental DNA". Nature. 612 (7939): 283–291. Bibcode:2022Natur.612..283K. doi:10.1038/s41586-022-05453-y. PMC 9729109. PMID 36477129. S2CID 254367944.
Barnes, Matthew A.; Turner, Cameron R. (2016). "The ecology of environmental DNA and implications for conservation genetics". Conservation Genetics. 17 (1): 1–17. Bibcode:2016ConG...17....1B. doi:10.1007/s10592-015-0775-4. hdl:2346/87600. S2CID 14914544.
Deiner, Kristy; Walser, Jean-Claude; Mächler, Elvira; Altermatt, Florian (2015). "Choice of capture and extraction methods affect detection of freshwater biodiversity from environmental DNA". Biological Conservation. 183: 53–63. Bibcode:2015BCons.183...53D. doi:10.1016/j.biocon.2014.11.018.
Taberlet, Pierre; Coissac, Eric; Pompanon, François; Brochmann, Christian; Willerslev, Eske (2012). "Towards next-generation biodiversity assessment using DNA metabarcoding". Molecular Ecology. 21 (8): 2045–2050. Bibcode:2012MolEc..21.2045T. doi:10.1111/j.1365-294X.2012.05470.x. PMID 22486824. S2CID 41437334.
Stewart, Kathryn; Ma, Hongjuan; Zheng, Jinsong; Zhao, Jianfu (2017). "Using environmental DNA to assess population-wide spatiotemporal reserve use". Conservation Biology (in Spanish). 31 (5): 1173–1182. Bibcode:2017ConBi..31.1173S. doi:10.1111/cobi.12910. ISSN 1523-1739. PMID 28221696. S2CID 3781648.
Goldberg, Caren S.; Turner, Cameron R.; Deiner, Kristy; Klymus, Katy E.; Thomsen, Philip Francis; Murphy, Melanie A.; Spear, Stephen F.; McKee, Anna; Oyler-Mccance, Sara J.; Cornman, Robert Scott; Laramie, Matthew B.; Mahon, Andrew R.; Lance, Richard F.; Pilliod, David S.; Strickler, Katherine M.; Waits, Lisette P.; Fremier, Alexander K.; Takahara, Teruhiko; Herder, Jelger E.; Taberlet, Pierre (2016). "Critical considerations for the application of environmental DNA methods to detect aquatic species". Methods in Ecology and Evolution. 7 (11): 1299–1307. Bibcode:2016MEcEv...7.1299G. doi:10.1111/2041-210X.12595. hdl:20.500.11850/502281. S2CID 89432389.
Hering, Daniel; Borja, Angel; Jones, J.Iwan; Pont, Didier; Boets, Pieter; Bouchez, Agnes; Bruce, Kat; Drakare, Stina; Hänfling, Bernd; Kahlert, Maria; Leese, Florian; Meissner, Kristian; Mergen, Patricia; Reyjol, Yorick; Segurado, Pedro; Vogler, Alfried; Kelly, Martyn (2018). "Implementation options for DNA-based identification into ecological status assessment under the European Water Framework Directive". Water Research. 138: 192–205. Bibcode:2018WatRe.138..192H. doi:10.1016/j.watres.2018.03.003. PMID 29602086. S2CID 5008250.
Deiner, Kristy; Bik, Holly M.; Mächler, Elvira; Seymour, Mathew; Lacoursière-Roussel, Anaïs; Altermatt, Florian; Creer, Simon; Bista, Iliana; Lodge, David M.; Vere, Natasha; Pfrender, Michael E.; Bernatchez, Louis (2017). "Environmental DNA metabarcoding: Transforming how we survey animal and plant communities". Molecular Ecology. 26 (21): 5872–5895. Bibcode:2017MolEc..26.5872D. doi:10.1111/mec.14350. hdl:20.500.11850/455284. PMID 28921802. S2CID 8001074.
Ma, Hongjuan; Stewart, Kathryn; Lougheed, Stephen; Zheng, Jinsong; Wang, Yuxiang; Zhao, Jianfu (1 December 2016). "Characterization, optimization, and validation of environmental DNA (eDNA) markers to detect an endangered aquatic mammal". Conservation Genetics Resources. 8 (4): 561–568. Bibcode:2016ConGR...8..561M. doi:10.1007/s12686-016-0597-9. ISSN 1877-7260. S2CID 1613649.
Coissac, Eric; Riaz, Tiayyba; Puillandre, Nicolas (2012). "Bioinformatic challenges for DNA metabarcoding of plants and animals". Molecular Ecology. 21 (8): 1834–1847. Bibcode:2012MolEc..21.1834C. doi:10.1111/j.1365-294X.2012.05550.x. PMID 22486822. S2CID 24398174.
Eichmiller, Jessica J.; Best, Sendréa E.; Sorensen, Peter W. (2016). "Effects of Temperature and Trophic State on Degradation of Environmental DNA in Lake Water". Environmental Science & Technology. 50 (4): 1859–1867. Bibcode:2016EnST...50.1859E. doi:10.1021/acs.est.5b05672. PMID 26771292.
Creer, Simon; Deiner, Kristy; Frey, Serita; Porazinska, Dorota; Taberlet, Pierre; Thomas, W. Kelley; Potter, Caitlin; Bik, Holly M. (2016). "The ecologist's field guide to sequence-based identification of biodiversity". Methods in Ecology and Evolution. 7 (9): 1008–1018. Bibcode:2016MEcEv...7.1008C. doi:10.1111/2041-210X.12574. hdl:20.500.11850/125378. S2CID 87512991.
Yu, Douglas W.; Ji, Yinqiu; Emerson, Brent C.; Wang, Xiaoyang; Ye, Chengxi; Yang, Chunyan; Ding, Zhaoli (2012). "Biodiversity soup: Metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring". Methods in Ecology and Evolution. 3 (4): 613–623. Bibcode:2012MEcEv...3..613Y. doi:10.1111/j.2041-210X.2012.00198.x. hdl:10261/193380. S2CID 83095866.
Gibson, Joel F.; Shokralla, Shadi; Curry, Colin; Baird, Donald J.; Monk, Wendy A.; King, Ian; Hajibabaei, Mehrdad (2015). "Large-Scale Biomonitoring of Remote and Threatened Ecosystems via High-Throughput Sequencing". PLOS ONE. 10 (10): e0138432. Bibcode:2015PLoSO..1038432G. doi:10.1371/journal.pone.0138432. PMC 4619546. PMID 26488407.
Hu W, Li L, Sharma S, Wang J, McHardy I, Lux R, Yang Z, He X, Gimzewski JK, Li Y, Shi W (2012). "DNA builds and strengthens the extracellular matrix in Myxococcus xanthus biofilms by interacting with exopolysaccharides". PLOS ONE. 7 (12): e51905. Bibcode:2012PLoSO...751905H. doi:10.1371/journal.pone.0051905. PMC 3530553. PMID 23300576.
Foote AD, Thomsen PF, Sveegaard S, Wahlberg M, Kielgast J, Kyhn LA, et al. (2012). "Investigating the potential use of environmental DNA (eDNA) for genetic monitoring of marine mammals". PLOS ONE. 7 (8): e41781. Bibcode:2012PLoSO...741781F. doi:10.1371/journal.pone.0041781. PMC 3430683. PMID 22952587.
Willerslev, Eske; Hansen, Anders J.; Binladen, Jonas; Brand, Tina B.; Gilbert, M. Thomas fP.; Shapiro, Beth; Bunce, Michael; Wiuf, Carsten; Gilichinsky, David A. (2 May 2003). "Diverse Plant and Animal Genetic Records from Holocene and Pleistocene Sediments". Science. 300 (5620): 791–795. Bibcode:2003Sci...300..791W. doi:10.1126/science.1084114. ISSN 0036-8075. PMID 12702808. S2CID 1222227.
Andersen, Kenneth; Bird, Karen Lise; Rasmussen, Morten; Haile, James; Breuning-Madsen, Henrik; Kjaer, Kurt H.; Orlando, Ludovic; Gilbert, M. Thomas P.; Willerslev, Eske (1 April 2012). "Meta-barcoding of 'dirt' DNA from soil reflects vertebrate biodiversity". Molecular Ecology. 21 (8): 1966–1979. Bibcode:2012MolEc..21.1966A. doi:10.1111/j.1365-294X.2011.05261.x. ISSN 1365-294X. PMID 21917035. S2CID 43351435.
Schultz, Martin (2015). "Modeling the Sensitivity of Field Surveys for Detection of Environmental DNA (eDNA)". PLOS ONE. 10 (10): 1–16. Bibcode:2015PLoSO..1041503S. doi:10.1371/journal.pone.0141503. ISSN 1932-6203. PMC 4624909. PMID 26509674.
Stoeckle, Bernhard (2016). "Environmental DNA as a monitoring tool for the endangered freshwater pearl mussel (Margaritifera margaritifera L.): a substitute for classical monitoring approaches?". Aquatic Conservation: Marine and Freshwater Ecosystems. 26 (6): 1120–1129. Bibcode:2016ACMFE..26.1120S. doi:10.1002/aqc.2611.
Souza, Lesley (2016). "Environmental DNA (eDNA) Detection Probability Is Influenced by Seasonal Activity of Organisms". PLOS ONE. 11 (10): 1–15. Bibcode:2016PLoSO..1165273D. doi:10.1371/journal.pone.0165273. ISSN 1932-6203. PMC 5077074. PMID 27776150.
Saeko, Matsuhashi (2016). "Evaluation of the Environmental DNA Method for Estimating Distribution and Biomass of Submerged Aquatic Plants". PLOS ONE. 11 (6): 1–14. Bibcode:2016PLoSO..1156217M. doi:10.1371/journal.pone.0156217. ISSN 1932-6203. PMC 4909283. PMID 27304876.
Bergman, Paul S.; Schumer, Gregg; Blankenship, Scott; Campbell, Elizabeth (2016). "Detection of Adult Green Sturgeon Using Environmental DNA Analysis". PLOS ONE. 11 (4): 1–8. Bibcode:2016PLoSO..1153500B. doi:10.1371/journal.pone.0153500. ISSN 1932-6203. PMC 4838217. PMID 27096433.
Dirzo, R.; Young, H. S.; Galetti, M.; Ceballos, G.; Isaac, N. J. B.; Collen, B. (2014). "Defaunation in the Anthropocene" (PDF). Science. 345 (6195): 401–406. Bibcode:2014Sci...345..401D. doi:10.1126/science.1251817. PMID 25061202. S2CID 206555761.
Habel, Jan Christian; Dengler, Jürgen; Janišová, Monika; Török, Péter; Wellstein, Camilla; Wiezik, Michal (2013). "European grassland ecosystems: Threatened hotspots of biodiversity". Biodiversity and Conservation. 22 (10): 2131–2138. Bibcode:2013BiCon..22.2131H. doi:10.1007/s10531-013-0537-x. S2CID 15901140.
Biesmeijer, J. C.; Roberts, S. P.; Reemer, M.; Ohlemüller, R.; Edwards, M.; Peeters, T.; Schaffers, A. P.; Potts, S. G.; Kleukers, R.; Thomas, C. D.; Settele, J.; Kunin, W. E. (2006). "Parallel Declines in Pollinators and Insect-Pollinated Plants in Britain and the Netherlands". Science. 313 (5785): 351–354. Bibcode:2006Sci...313..351B. doi:10.1126/science.1127863. PMID 16857940. S2CID 16273738.
Ollerton, Jeff; Winfree, Rachael; Tarrant, Sam (2011). "How many flowering plants are pollinated by animals?". Oikos. 120 (3): 321–326. Bibcode:2011Oikos.120..321O. doi:10.1111/j.1600-0706.2010.18644.x.
Hopkins, G. W.; Freckleton, R. P. (2002). "Declines in the numbers of amateur and professional taxonomists: Implications for conservation". Animal Conservation. 5 (3): 245–249. Bibcode:2002AnCon...5..245H. doi:10.1017/S1367943002002299. S2CID 86182871.
Bush, Alex; Sollmann, Rahel; Wilting, Andreas; Bohmann, Kristine; Cole, Beth; Balzter, Heiko; Martius, Christopher; Zlinszky, András; Calvignac-Spencer, Sébastien; Cobbold, Christina A.; Dawson, Terence P.; Emerson, Brent C.; Ferrier, Simon; Gilbert, M. Thomas P.; Herold, Martin; Jones, Laurence; Leendertz, Fabian H.; Matthews, Louise; Millington, James D. A.; Olson, John R.; Ovaskainen, Otso; Raffaelli, Dave; Reeve, Richard; Rödel, Mark-Oliver; Rodgers, Torrey W.; Snape, Stewart; Visseren-Hamakers, Ingrid; Vogler, Alfried P.; White, Piran C. L.; et al. (2017). "Connecting Earth observation to high-throughput biodiversity data" (PDF). Nature Ecology & Evolution. 1 (7): 176. Bibcode:2017NatEE...1..176B. doi:10.1038/s41559-017-0176. PMID 28812589. S2CID 205564094.
Arribas, Paula; Andújar, Carmelo; Hopkins, Kevin; Shepherd, Matthew; Vogler, Alfried P. (2016). "Metabarcoding and mitochondrial metagenomics of endogean arthropods to unveil the mesofauna of the soil". Methods in Ecology and Evolution. 7 (9): 1071–1081. Bibcode:2016MEcEv...7.1071A. doi:10.1111/2041-210X.12557. hdl:10044/1/49935. S2CID 51899316.
Hajibabaei, Mehrdad; Shokralla, Shadi; Zhou, Xin; Singer, Gregory A. C.; Baird, Donald J. (2011). "Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos". PLOS ONE. 6 (4): e17497. Bibcode:2011PLoSO...617497H. doi:10.1371/journal.pone.0017497. PMC 3076369. PMID 21533287.
Xu, Charles C. Y.; Yen, Ivy J.; Bowman, Dean; Turner, Cameron R. (2015). "Spider Web DNA: A New Spin on Noninvasive Genetics of Predator and Prey". PLOS ONE. 10 (11): e0142503. Bibcode:2015PLoSO..1042503X. doi:10.1371/journal.pone.0142503. PMC 4659541. PMID 26606730. S2CID 5331545.
Derocles, Stéphane A. P.; Evans, Darren M.; Nichols, Paul C.; Evans, S. Aifionn; Lunt, David H. (2015). "Determining Plant – Leaf Miner – Parasitoid Interactions: A DNA Barcoding Approach". PLOS ONE. 10 (2): e0117872. Bibcode:2015PLoSO..1017872D. doi:10.1371/journal.pone.0117872. PMC 4339730. PMID 25710377.
Blake, Max; McKeown, Niall J.; Bushell, Mark L. T.; Shaw, Paul W. (2016). "DNA extraction from spider webs". Conservation Genetics Resources. 8 (3): 219–221. Bibcode:2016ConGR...8..219B. doi:10.1007/s12686-016-0537-8. hdl:2160/43510. S2CID 15122457.
Bittleston, Leonora S.; Baker, Christopher C. M.; Strominger, Lila B.; Pringle, Anne; Pierce, Naomi E. (2016). "Metabarcoding as a tool for investigating arthropod diversity in Nepenthespitcher plants". Austral Ecology. 41 (2): 120–132. Bibcode:2016AusEc..41..120B. doi:10.1111/aec.12271.
Taberlet, Pierre; Coissac, Eric; Hajibabaei, Mehrdad; Rieseberg, Loren H. (2012). "Environmental DNA". Molecular Ecology. 21 (8): 1789–1793. Bibcode:2012MolEc..21.1789T. doi:10.1111/j.1365-294X.2012.05542.x. PMID 22486819. S2CID 3961830.
Thomsen, Philip Francis; Kielgast, JOS; Iversen, Lars L.; Wiuf, Carsten; Rasmussen, Morten; Gilbert, M. Thomas P.; Orlando, Ludovic; Willerslev, Eske (2012). "Monitoring endangered freshwater biodiversity using environmental DNA". Molecular Ecology. 21 (11): 2565–2573. Bibcode:2012MolEc..21.2565T. doi:10.1111/j.1365-294X.2011.05418.x. PMID 22151771.
Zinger, Lucie; Taberlet, Pierre; Schimann, Heidy; Bonin, Aurélie; Boyer, Frédéric; De Barba, Marta; Gaucher, Philippe; Gielly, Ludovic; Giguet-Covex, Charline; Iribar, Amaia; Réjou-Méchain, Maxime; Rayé, Gilles; Rioux, Delphine; Schilling, Vincent; Tymen, Blaise; Viers, Jérôme; Zouiten, Cyril; Thuiller, Wilfried; Coissac, Eric; Chave, Jérôme (2019). "Body size determines soil community assembly in a tropical forest". Molecular Ecology. 28 (3): 528–543. Bibcode:2019MolEc..28..528Z. doi:10.1111/mec.14919. PMID 30375061. S2CID 53114166.
Paula, Débora P.; Linard, Benjamin; Crampton-Platt, Alex; Srivathsan, Amrita; Timmermans, Martijn J. T. N.; Sujii, Edison R.; Pires, Carmen S. S.; Souza, Lucas M.; Andow, David A.; Vogler, Alfried P. (2016). "Uncovering Trophic Interactions in Arthropod Predators through DNA Shotgun-Sequencing of Gut Contents". PLOS ONE. 11 (9): e0161841. Bibcode:2016PLoSO..1161841P. doi:10.1371/journal.pone.0161841. PMC 5021305. PMID 27622637.
Bohmann, Kristine; Monadjem, Ara; Lehmkuhl Noer, Christina; Rasmussen, Morten; Zeale, Matt R. K.; Clare, Elizabeth; Jones, Gareth; Willerslev, Eske; Gilbert, M. Thomas P. (2011). "Molecular Diet Analysis of Two African Free-Tailed Bats (Molossidae) Using High Throughput Sequencing". PLOS ONE. 6 (6): e21441. Bibcode:2011PLoSO...621441B. doi:10.1371/journal.pone.0021441. PMC 3120876. PMID 21731749.
Vesterinen, Eero J.; Lilley, Thomas; Laine, Veronika N.; Wahlberg, Niklas (2013). "Next Generation Sequencing of Fecal DNA Reveals the Dietary Diversity of the Widespread Insectivorous Predator Daubenton's Bat (Myotis daubentonii) in Southwestern Finland". PLOS ONE. 8 (11): e82168. Bibcode:2013PLoSO...882168V. doi:10.1371/journal.pone.0082168. PMC 3842304. PMID 24312405.
Pornon, André; Escaravage, Nathalie; Burrus, Monique; Holota, Hélène; Khimoun, Aurélie; Mariette, Jérome; Pellizzari, Charlène; Iribar, Amaia; Etienne, Roselyne; Taberlet, Pierre; Vidal, Marie; Winterton, Peter; Zinger, Lucie; Andalo, Christophe (2016). "Using metabarcoding to reveal and quantify plant-pollinator interactions". Scientific Reports. 6: 27282. Bibcode:2016NatSR...627282P. doi:10.1038/srep27282. PMC 4891682. PMID 27255732.
Franklin, Thomas W.; McKelvey, Kevin S.; Golding, Jessie D.; Mason, Daniel H.; Dysthe, Joseph C.; Pilgrim, Kristine L.; Squires, John R.; Aubry, Keith B.; Long, Robert A.; Greaves, Samuel E.; Raley, Catherine M.; Jackson, Scott; MacKay, Paula; Lisbon, Joshua; Sauder, Joel D.; Pruss, Michael T.; Heffington, Don; Schwartz, Michael K. (2019). "Using environmental DNA methods to improve winter surveys for rare carnivores: DNA from snow and improved noninvasive techniques". Biological Conservation. 229: 50–58. Bibcode:2019BCons.229...50F. doi:10.1016/j.biocon.2018.11.006. S2CID 91312879. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Lynggaard, Christina; Bertelsen, Mads Frost; Jensen, Casper V.; Johnson, Matthew S.; Frøslev, Tobias Guldberg; Olsen, Morten Tange; Bohmann, Kristine (6 January 2022). "Airborne environmental DNA for terrestrial vertebrate community monitoring". Current Biology. 32 (3): 701–707.e5. Bibcode:2022CBio...32E.701L. doi:10.1016/j.cub.2021.12.014. PMC 8837273. PMID 34995490. S2CID 245772800.
Clare, Elizabeth L.; Economou, Chloe K.; Bennett, Frances J.; Dyer, Caitlin E.; Adams, Katherine; McRobie, Benjamin; Drinkwater, Rosie; Littlefair, Joanne E. (January 2022). "Measuring biodiversity from DNA in the air". Current Biology. 32 (3): 693–700.e5. Bibcode:2022CBio...32E.693C. doi:10.1016/j.cub.2021.11.064. PMID 34995488. S2CID 245772825.
Kenneth T. Frank; Brian Petrie; Jae S. Choi; William C. Leggett (2005). "Trophic Cascades in a Formerly Cod-Dominated Ecosystem". Science. 308 (5728): 1621–1623. Bibcode:2005Sci...308.1621F. doi:10.1126/science.1113075. PMID 15947186. S2CID 45088691.
Pusceddu, A.; Bianchelli, S.; Martin, J.; Puig, P.; Palanques, A.; Masque, P.; Danovaro, R. (2014). "Chronic and intensive bottom trawling impairs deep-sea biodiversity and ecosystem functioning". Proceedings of the National Academy of Sciences. 111 (24): 8861–8866. Bibcode:2014PNAS..111.8861P. doi:10.1073/pnas.1405454111. PMC 4066481. PMID 24843122.
Goldberg, Caren S.; Pilliod, David S.; Arkle, Robert S.; Waits, Lisette P. (2011). "Molecular Detection of Vertebrates in Stream Water: A Demonstration Using Rocky Mountain Tailed Frogs and Idaho Giant Salamanders". PLOS ONE. 6 (7): e22746. Bibcode:2011PLoSO...622746G. doi:10.1371/journal.pone.0022746. PMC 3144250. PMID 21818382.
Valentini, Alice; Taberlet, Pierre; Miaud, Claude; Civade, Raphaël; Herder, Jelger; Thomsen, Philip Francis; Bellemain, Eva; Besnard, Aurélien; Coissac, Eric; Boyer, Frédéric; Gaboriaud, Coline; Jean, Pauline; Poulet, Nicolas; Roset, Nicolas; Copp, Gordon H.; Geniez, Philippe; Pont, Didier; Argillier, Christine; Baudoin, Jean-Marc; Peroux, Tiphaine; Crivelli, Alain J.; Olivier, Anthony; Acqueberge, Manon; Le Brun, Matthieu; Møller, Peter R.; Willerslev, Eske; Dejean, Tony (2016). "Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding" (PDF). Molecular Ecology. 25 (4): 929–942. Bibcode:2016MolEc..25..929V. doi:10.1111/mec.13428. PMID 26479867. S2CID 2801412.
Stoeckle, Mark Y.; Soboleva, Lyubov; Charlop-Powers, Zachary (2017). "Aquatic environmental DNA detects seasonal fish abundance and habitat preference in an urban estuary". PLOS ONE. 12 (4): e0175186. Bibcode:2017PLoSO..1275186S. doi:10.1371/journal.pone.0175186. PMC 5389620. PMID 28403183.
Thomsen, Philip Francis; Kielgast, Jos; Iversen, Lars Lønsmann; Møller, Peter Rask; Rasmussen, Morten; Willerslev, Eske (2012). "Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples". PLOS ONE. 7 (8): e41732. Bibcode:2012PLoSO...741732T. doi:10.1371/journal.pone.0041732. PMC 3430657. PMID 22952584.
Thomsen, Philip Francis; Møller, Peter Rask; Sigsgaard, Eva Egelyng; Knudsen, Steen Wilhelm; Jørgensen, Ole Ankjær; Willerslev, Eske (2016). "Environmental DNA from Seawater Samples Correlate with Trawl Catches of Subarctic, Deepwater Fishes". PLOS ONE. 11 (11): e0165252. Bibcode:2016PLoSO..1165252T. doi:10.1371/journal.pone.0165252. PMC 5112899. PMID 27851757.
Sigsgaard, Eva Egelyng; Nielsen, Ida Broman; Carl, Henrik; Krag, Marcus Anders; Knudsen, Steen Wilhelm; Xing, Yingchun; Holm-Hansen, Tore Hejl; Møller, Peter Rask; Thomsen, Philip Francis (2017). "Seawater environmental DNA reflects seasonality of a coastal fish community". Marine Biology. 164 (6): 128. Bibcode:2017MarBi.164..128S. doi:10.1007/s00227-017-3147-4. S2CID 89773962.
Takahara, Teruhiko; Minamoto, Toshifumi; Yamanaka, Hiroki; Doi, Hideyuki; Kawabata, Zen'Ichiro (2012). "Estimation of Fish Biomass Using Environmental DNA". PLOS ONE. 7 (4): e35868. Bibcode:2012PLoSO...735868T. doi:10.1371/journal.pone.0035868. PMC 3338542. PMID 22563411.
Doi, Hideyuki; Uchii, Kimiko; Takahara, Teruhiko; Matsuhashi, Saeko; Yamanaka, Hiroki; Minamoto, Toshifumi (2015). "Use of Droplet Digital PCR for Estimation of Fish Abundance and Biomass in Environmental DNA Surveys". PLOS ONE. 10 (3): e0122763. Bibcode:2015PLoSO..1022763D. doi:10.1371/journal.pone.0122763. PMC 4370432. PMID 25799582.
Maruyama, Atsushi; Nakamura, Keisuke; Yamanaka, Hiroki; Kondoh, Michio; Minamoto, Toshifumi (2014). "The Release Rate of Environmental DNA from Juvenile and Adult Fish". PLOS ONE. 9 (12): e114639. Bibcode:2014PLoSO...9k4639M. doi:10.1371/journal.pone.0114639. PMC 4257714. PMID 25479160.
Klymus, Katy E.; Richter, Catherine A.; Chapman, Duane C.; Paukert, Craig (2015). "Quantification of eDNA shedding rates from invasive bighead carp Hypophthalmichthys nobilis and silver carp Hypophthalmichthys molitrix". Biological Conservation. 183: 77–84. Bibcode:2015BCons.183...77K. doi:10.1016/j.biocon.2014.11.020.
Salter, Ian (2018). "Seasonal variability in the persistence of dissolved environmental DNA (EDNA) in a marine system: The role of microbial nutrient limitation". PLOS ONE. 13 (2): e0192409. Bibcode:2018PLoSO..1392409S. doi:10.1371/journal.pone.0192409. PMC 5825020. PMID 29474423.
Buxton, Andrew S.; Groombridge, Jim J.; Griffiths, Richard A. (2018). "Seasonal variation in environmental DNA detection in sediment and water samples". PLOS ONE. 13 (1): e0191737. Bibcode:2018PLoSO..1391737B. doi:10.1371/journal.pone.0191737. PMC 5774844. PMID 29352294.
Eichmiller, Jessica J.; Bajer, Przemyslaw G.; Sorensen, Peter W. (2014). "The Relationship between the Distribution of Common Carp and Their Environmental DNA in a Small Lake". PLOS ONE. 9 (11): e112611. Bibcode:2014PLoSO...9k2611E. doi:10.1371/journal.pone.0112611. PMC 4226586. PMID 25383965.
Gargan, Laura M.; Morato, Telmo; Pham, Christopher K.; Finarelli, John A.; Carlsson, Jeanette E. L.; Carlsson, Jens (2017). "Development of a sensitive detection method to survey pelagic biodiversity using eDNA and quantitative PCR: A case study of devil ray at seamounts". Marine Biology. 164 (5): 112. Bibcode:2017MarBi.164..112G. doi:10.1007/s00227-017-3141-x. S2CID 91149351.
Yamamoto, Satoshi; Minami, Kenji; Fukaya, Keiichi; Takahashi, Kohji; Sawada, Hideki; Murakami, Hiroaki; Tsuji, Satsuki; Hashizume, Hiroki; Kubonaga, Shou; Horiuchi, Tomoya; Hongo, Masamichi; Nishida, Jo; Okugawa, Yuta; Fujiwara, Ayaka; Fukuda, Miho; Hidaka, Shunsuke; Suzuki, Keita W.; Miya, Masaki; Araki, Hitoshi; Yamanaka, Hiroki; Maruyama, Atsushi; Miyashita, Kazushi; Masuda, Reiji; Minamoto, Toshifumi; Kondoh, Michio (2016). "Environmental DNA as a 'Snapshot' of Fish Distribution: A Case Study of Japanese Jack Mackerel in Maizuru Bay, Sea of Japan". PLOS ONE. 11 (3): e0149786. Bibcode:2016PLoSO..1149786Y. doi:10.1371/journal.pone.0149786. PMC 4775019. PMID 26933889. S2CID 5168061.
Corinaldesi, C.; Tangherlini, M.; Manea, E.; Dell'Anno, A. (2018). "Extracellular DNA as a genetic recorder of microbial diversity in benthic deep-sea ecosystems". Scientific Reports. 8 (1): 1839. Bibcode:2018NatSR...8.1839C. doi:10.1038/s41598-018-20302-7. PMC 5789842. PMID 29382896. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Corinaldesi, Cinzia; Dell'Anno, Antonio; Danovaro, Roberto (2007). "Viral infection plays a key role in extracellular DNA dynamics in marine anoxic systems". Limnology and Oceanography. 52 (2): 508–516. Bibcode:2007LimOc..52..508C. doi:10.4319/lo.2007.52.2.0508. S2CID 85601366.
Dell'Anno, Antonio; Corinaldesi, Cinzia; Danovaro, Roberto (2015). "Virus decomposition provides an important contribution to benthic deep-sea ecosystem functioning". Proceedings of the National Academy of Sciences. 112 (16): E2014–E2019. Bibcode:2015PNAS..112E2014D. doi:10.1073/pnas.1422234112. PMC 4413343. PMID 25848024.
Coolen, Marco J. L.; Overmann, Jörg (1998). "Analysis of Subfossil Molecular Remains of Purple Sulfur Bacteria in a Lake Sediment". Applied and Environmental Microbiology. 64 (11): 4513–4521. Bibcode:1998ApEnM..64.4513C. doi:10.1128/AEM.64.11.4513-4521.1998. PMC 106678. PMID 9797316.
Coolen, M.; Muyzer, Gerard; Rijpstra, W. Irene C.; Schouten, Stefan; Volkman, John K.; Sinninghe Damsté, Jaap S. (2004). "Combined DNA and lipid analyses of sediments reveal changes in Holocene haptophyte and diatom populations in an Antarctic lake". Earth and Planetary Science Letters. 223 (1–2): 225–239. Bibcode:2004E&PSL.223..225C. doi:10.1016/j.epsl.2004.04.014.
Coolen, M. J. L.; Orsi, W. D.; Balkema, C.; Quince, C.; Harris, K.; Sylva, S. P.; Filipova-Marinova, M.; Giosan, L. (2013). "Evolution of the plankton paleome in the Black Sea from the Deglacial to Anthropocene". Proceedings of the National Academy of Sciences. 110 (21): 8609–8614. Bibcode:2013PNAS..110.8609C. doi:10.1073/pnas.1219283110. PMC 3666672. PMID 23650351.
Boere, Arjan C.; Rijpstra, W. Irene C.; De Lange, Gert J.; Malinverno, Elisa; Sinninghe Damsté, Jaap S.; Coolen, Marco J. L. (2011). "Exploring preserved fossil dinoflagellate and haptophyte DNA signatures to infer ecological and environmental changes during deposition of sapropel S1 in the eastern Mediterranean" (PDF). Paleoceanography. 26 (2): n/a. Bibcode:2011PalOc..26.2204B. doi:10.1029/2010PA001948. S2CID 53599204.
Coolen, M. J. L.; Cypionka, H.; Sass, A. M.; Sass, H.; Overmann, J. (2002). "Ongoing Modification of Mediterranean Pleistocene Sapropels Mediated by Prokaryotes". Science. 296 (5577): 2407–2410. Bibcode:2002Sci...296.2407C. doi:10.1126/science.1071893. PMID 12089447. S2CID 33722848.
Coolen, Marco J. L.; Volkman, John K.; Abbas, Ben; Muyzer, Gerard; Schouten, Stefan; Sinninghe Damsté, Jaap S. (2007). "Identification of organic matter sources in sulfidic late Holocene Antarctic fjord sediments from fossil rDNA sequence analysis". Paleoceanography. 22 (2): PA2211. Bibcode:2007PalOc..22.2211C. doi:10.1029/2006PA001309. hdl:1912/3447.
Coolen, Marco J.L.; Saenz, James P.; Giosan, Liviu; Trowbridge, Nan Y.; Dimitrov, Petko; Dimitrov, Dimitar; Eglinton, Timothy I. (2009). "DNA and lipid molecular stratigraphic records of haptophyte succession in the Black Sea during the Holocene". Earth and Planetary Science Letters. 284 (3–4): 610–621. Bibcode:2009E&PSL.284..610C. doi:10.1016/j.epsl.2009.05.029.
Dell'Anno, Antonio; Corinaldesi, Cinzia; Stavrakakis, Spyros; Lykousis, Vasilis; Danovaro, Roberto (2005). "Pelagic-Benthic Coupling and Diagenesis of Nucleic Acids in a Deep-Sea Continental Margin and an Open-Slope System of the Eastern Mediterranean". Applied and Environmental Microbiology. 71 (10): 6070–6076. Bibcode:2005ApEnM..71.6070D. doi:10.1128/AEM.71.10.6070-6076.2005. PMC 1265925. PMID 16204523.
Levin, Lisa A.; Liu, Kon-Kee; Emeis, Kay-Christian; Breitburg, Denise L.; Cloern, James; Deutsch, Curtis; Giani, Michele; Goffart, Anne; Hofmann, Eileen E.; Lachkar, Zouhair; Limburg, Karin; Liu, Su-Mei; Montes, Enrique; Naqvi, Wajih; Ragueneau, Olivier; Rabouille, Christophe; Sarkar, Santosh Kumar; Swaney, Dennis P.; Wassman, Paul; Wishner, Karen F. (2015). "Comparative biogeochemistry–ecosystem–human interactions on dynamic continental margins". Journal of Marine Systems. 141: 3–17. Bibcode:2015JMS...141....3L. doi:10.1016/j.jmarsys.2014.04.016. S2CID 7139186.
Zinger, Lucie; Amaral-Zettler, Linda A.; Fuhrman, Jed A.; Horner-Devine, M. Claire; Huse, Susan M.; Welch, David B. Mark; Martiny, Jennifer B. H.; Sogin, Mitchell; Boetius, Antje; Ramette, Alban (2011). "Global Patterns of Bacterial Beta-Diversity in Seafloor and Seawater Ecosystems". PLOS ONE. 6 (9): e24570. Bibcode:2011PLoSO...624570Z. doi:10.1371/journal.pone.0024570. PMC 3169623. PMID 21931760.
Bienhold, Christina; Boetius, Antje; Ramette, Alban (2012). "The energy–diversity relationship of complex bacterial communities in Arctic deep-sea sediments". The ISME Journal. 6 (4): 724–732. Bibcode:2012ISMEJ...6..724B. doi:10.1038/ismej.2011.140. PMC 3309351. PMID 22071347.
Zinger, L.; Boetius, A.; Ramette, A. (2014). "Bacterial taxa–area and distance–decay relationships in marine environments". Molecular Ecology. 23 (4): 954–964. Bibcode:2014MolEc..23..954Z. doi:10.1111/mec.12640. PMC 4230465. PMID 24460915.
Corinaldesi, C.; Beolchini, F.; Dell'Anno, A. (2008). "Damage and degradation rates of extracellular DNA in marine sediments: Implications for the preservation of gene sequences". Molecular Ecology. 17 (17): 3939–3951. Bibcode:2008MolEc..17.3939C. doi:10.1111/j.1365-294X.2008.03880.x. PMID 18643876. S2CID 22062643.
Armbrecht, Linda H.; Coolen, Marco J.L.; Lejzerowicz, Franck; George, Simon C.; Negandhi, Karita; Suzuki, Yohey; Young, Jennifer; Foster, Nicole R.; Armand, Leanne K.; Cooper, Alan; Ostrowski, Martin; Focardi, Amaranta; Stat, Michael; Moreau, John W.; Weyrich, Laura S. (2019). "Ancient DNA from marine sediments: Precautions and considerations for seafloor coring, sample handling and data generation". Earth-Science Reviews. 196: 102887. Bibcode:2019ESRv..19602887A. doi:10.1016/j.earscirev.2019.102887. hdl:10453/134221. S2CID 198406152.
Iversen, M. H.; Ploug, H. (2010). "Ballast minerals and the sinking carbon flux in the ocean: Carbon-specific respiration rates and sinking velocity of marine snow aggregates". Biogeosciences. 7 (9): 2613–2624. Bibcode:2010BGeo....7.2613I. doi:10.5194/bg-7-2613-2010.
Takahashi, Kozo; Be, Allan W.H. (1984). "Planktonic foraminifera: Factors controlling sinking speeds". Deep Sea Research Part A. Oceanographic Research Papers. 31 (12): 1477–1500. Bibcode:1984DSRA...31.1477T. doi:10.1016/0198-0149(84)90083-9.
De Schepper, Stijn; Ray, Jessica L.; Skaar, Katrine Sandnes; Sadatzki, Henrik; Ijaz, Umer Z.; Stein, Ruediger; Larsen, Aud (2019). "The potential of sedimentary ancient DNA for reconstructing past sea ice evolution". The ISME Journal. 13 (10): 2566–2577. Bibcode:2019ISMEJ..13.2566D. doi:10.1038/s41396-019-0457-1. PMC 6776040. PMID 31235841.
Morard, Raphaël; Lejzerowicz, Franck; Darling, Kate F.; Lecroq-Bennet, Béatrice; Winther Pedersen, Mikkel; Orlando, Ludovic; Pawlowski, Jan; Mulitza, Stefan; De Vargas, Colomban; Kucera, Michal (2017). "Planktonic foraminifera-derived environmental DNA extracted from abyssal sediments preserves patterns of plankton macroecology". Biogeosciences. 14 (11): 2741–2754. Bibcode:2017BGeo...14.2741M. doi:10.5194/bg-14-2741-2017. hdl:10023/11053. S2CID 55213856.
Corinaldesi, C.; Beolchini, F.; Dell'Anno, A. (2008). "Damage and degradation rates of extracellular DNA in marine sediments: Implications for the preservation of gene sequences". Molecular Ecology. 17 (17): 3939–3951. Bibcode:2008MolEc..17.3939C. doi:10.1111/j.1365-294X.2008.03880.x. PMID 18643876. S2CID 22062643.
Corinaldesi, Cinzia; Dell'Anno, Antonio; Danovaro, Roberto (2007). "Early diagenesis and trophic role of extracellular DNA in different benthic ecosystems". Limnology and Oceanography. 52 (4): 1710–1717. Bibcode:2007LimOc..52.1710C. doi:10.4319/lo.2007.52.4.1710. S2CID 53631156.
Corinaldesi, C.; Barucca, M.; Luna, G. M.; Dell'Anno, A. (2011). "Preservation, origin and genetic imprint of extracellular DNA in permanently anoxic deep-sea sediments". Molecular Ecology. 20 (3): 642–654. Bibcode:2011MolEc..20..642C. doi:10.1111/j.1365-294X.2010.04958.x. PMID 21155913. S2CID 22920579.
Morard, Raphaël; Vollmar, Nele M.; Greco, Mattia; Kucera, Michal (2019). "Unassigned diversity of planktonic foraminifera from environmental sequencing revealed as known but neglected species". PLOS ONE. 14 (3): e0213936. Bibcode:2019PLoSO..1413936M. doi:10.1371/journal.pone.0213936. PMC 6428320. PMID 30897140.
Rutherford, Scott; d'Hondt, Steven; Prell, Warren (1999). "Environmental controls on the geographic distribution of zooplankton diversity". Nature. 400 (6746): 749–753. Bibcode:1999Natur.400..749R. doi:10.1038/23449. S2CID 4418045.
Siccha, Michael; Kucera, Michal (2017). "ForCenS, a curated database of planktonic foraminifera census counts in marine surface sediment samples". Scientific Data. 4: 170109. Bibcode:2017NatSD...470109S. doi:10.1038/sdata.2017.109. PMC 5566098. PMID 28829434.
Pawłowska, J.; Lejzerowicz, F.; Esling, P.; Szczuciński, W.; Zajączkowski, M.; Pawlowski, J. (2014). "Ancient DNA sheds new light on the Svalbard foraminiferal fossil record of the last millennium". Geobiology. 12 (4): 277–288. Bibcode:2014Gbio...12..277P. doi:10.1111/gbi.12087. PMID 24730667. S2CID 205140049.
Pawłowska, Joanna; Zajączkowski, Marek; Łącka, Magdalena; Lejzerowicz, Franck; Esling, Philippe; Pawlowski, Jan (2016). "Palaeoceanographic changes in Hornsund Fjord (Spitsbergen, Svalbard) over the last millennium: New insights from ancient DNA". Climate of the Past. 12 (7): 1459–1472. Bibcode:2016CliPa..12.1459P. doi:10.5194/cp-12-1459-2016. S2CID 43985949.
Szczuciński, Witold; Pawłowska, Joanna; Lejzerowicz, Franck; Nishimura, Yuichi; Kokociński, Mikołaj; Majewski, Wojciech; Nakamura, Yugo; Pawlowski, Jan (2016). "Ancient sedimentary DNA reveals past tsunami deposits". Marine Geology. 381: 29–33. Bibcode:2016MGeol.381...29S. doi:10.1016/j.margeo.2016.08.006.

ices.dk

ICES (2018). "NEAFC request on updated advice for cod (Gadus morhua) in Subdivision 5.b.1 (Faroe Plateau)" (PDF). doi:10.17895/ices.pub.4651. {{cite journal}}: Cite journal requires |journal= (help)

ifremer.fr

archimer.ifremer.fr

De Vargas, C.; et al. (2015). "Eukaryotic plankton diversity in the sunlit ocean". Science. 348 (6237). doi:10.1126/science.1261605. hdl:10261/117736. PMID 25999516. S2CID 12853481.

iisd.org

"How and Why Lakes Stratify and Turn Over: We explain the science". IISD Experimental Lakes Area. 16 May 2018. Retrieved 14 July 2020.

lib4ri.ch

dora.lib4ri.ch

Deiner, Kristy; Walser, Jean-Claude; Mächler, Elvira; Altermatt, Florian (2015). "Choice of capture and extraction methods affect detection of freshwater biodiversity from environmental DNA". Biological Conservation. 183: 53–63. Bibcode:2015BCons.183...53D. doi:10.1016/j.biocon.2014.11.018.

livescience.com

Researchers can now collect and sequence DNA from the air Live Science , 6 April 2021.

mmu.ac.uk

e-space.mmu.ac.uk

Tedersoo, Leho; Bahram, Mohammad; Põlme, Sergei; Kõljalg, Urmas; Yorou, Nourou S.; Wijesundera, Ravi; Ruiz, Luis Villarreal; Vasco-Palacios, Aída M.; Thu, Pham Quang (28 November 2014). "Global diversity and geography of soil fungi" (PDF). Science. 346 (6213): 1256688. doi:10.1126/science.1256688. hdl:10447/102930. ISSN 0036-8075. PMID 25430773. S2CID 206559506.

nationalgeographic.com

Roth, Annie (19 November 2018). "How DNA from snow helps scientists track elusive animals". National Geographic. Archived from the original on 19 November 2018. Retrieved 26 November 2018.

nerc.ac.uk

nora.nerc.ac.uk

Bush, Alex; Sollmann, Rahel; Wilting, Andreas; Bohmann, Kristine; Cole, Beth; Balzter, Heiko; Martius, Christopher; Zlinszky, András; Calvignac-Spencer, Sébastien; Cobbold, Christina A.; Dawson, Terence P.; Emerson, Brent C.; Ferrier, Simon; Gilbert, M. Thomas P.; Herold, Martin; Jones, Laurence; Leendertz, Fabian H.; Matthews, Louise; Millington, James D. A.; Olson, John R.; Ovaskainen, Otso; Raffaelli, Dave; Reeve, Richard; Rödel, Mark-Oliver; Rodgers, Torrey W.; Snape, Stewart; Visseren-Hamakers, Ingrid; Vogler, Alfried P.; White, Piran C. L.; et al. (2017). "Connecting Earth observation to high-throughput biodiversity data" (PDF). Nature Ecology & Evolution. 1 (7): 176. Bibcode:2017NatEE...1..176B. doi:10.1038/s41559-017-0176. PMID 28812589. S2CID 205564094.

newphytologist.org

"Extracellular self-DNA warns plants of danger". www.newphytologist.org. Retrieved 10 January 2022.

nih.gov

pubmed.ncbi.nlm.nih.gov

Thomsen, Philip Francis; Sigsgaard, Eva E. (2019). "Environmental DNA metabarcoding of wild flowers reveals diverse communities of terrestrial arthropods". Ecology and Evolution. 9 (4): 1665–1679. Bibcode:2019EcoEv...9.1665T. doi:10.1002/ece3.4809. PMC 6392377. PMID 30847063. S2CID 71143282. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Fahner, Nicole (2016). "Large-Scale Monitoring of Plants through Environmental DNA Metabarcoding of Soil: Recovery, Resolution, and Annotation of Four DNA Markers". PLOS ONE. 11 (6): 1–16. Bibcode:2016PLoSO..1157505F. doi:10.1371/journal.pone.0157505. ISSN 1932-6203. PMC 4911152. PMID 27310720 – via Directory of Open Access Journals.
Bohmann, Kristine; Evans, Alice; Gilbert, M. Thomas P.; Carvalho, Gary R.; Creer, Simon; Knapp, Michael; Yu, Douglas W.; de Bruyn, Mark (1 June 2014). "Environmental DNA for wildlife biology and biodiversity monitoring". Trends in Ecology & Evolution. 29 (6): 358–367. doi:10.1016/j.tree.2014.04.003. ISSN 1872-8383. PMID 24821515.
Qu, Chanjuan; Stewart, Kathryn A. (18 February 2019). "Evaluating monitoring options for conservation: comparing traditional and environmental DNA tools for a critically endangered mammal". The Science of Nature. 106 (3): 9. Bibcode:2019SciNa.106....9Q. doi:10.1007/s00114-019-1605-1. hdl:11245.1/d02ea724-b763-42b2-8f97-696ef88db996. ISSN 1432-1904. PMID 30778682. S2CID 66881381.
Kjær, Kurt H.; et al. (7 December 2022). "A 2-million-year-old ecosystem in Greenland uncovered by environmental DNA". Nature. 612 (7939): 283–291. Bibcode:2022Natur.612..283K. doi:10.1038/s41586-022-05453-y. PMC 9729109. PMID 36477129. S2CID 254367944.
Ficetola, Gentile Francesco; Miaud, Claude; Pompanon, François; Taberlet, Pierre (2008). "Species detection using environmental DNA from water samples". Biology Letters. 4 (4): 423–425. doi:10.1098/rsbl.2008.0118. PMC 2610135. PMID 18400683.
Taberlet, Pierre; Coissac, Eric; Pompanon, François; Brochmann, Christian; Willerslev, Eske (2012). "Towards next-generation biodiversity assessment using DNA metabarcoding". Molecular Ecology. 21 (8): 2045–2050. Bibcode:2012MolEc..21.2045T. doi:10.1111/j.1365-294X.2012.05470.x. PMID 22486824. S2CID 41437334.
Stewart, Kathryn; Ma, Hongjuan; Zheng, Jinsong; Zhao, Jianfu (2017). "Using environmental DNA to assess population-wide spatiotemporal reserve use". Conservation Biology (in Spanish). 31 (5): 1173–1182. Bibcode:2017ConBi..31.1173S. doi:10.1111/cobi.12910. ISSN 1523-1739. PMID 28221696. S2CID 3781648.
Hering, Daniel; Borja, Angel; Jones, J.Iwan; Pont, Didier; Boets, Pieter; Bouchez, Agnes; Bruce, Kat; Drakare, Stina; Hänfling, Bernd; Kahlert, Maria; Leese, Florian; Meissner, Kristian; Mergen, Patricia; Reyjol, Yorick; Segurado, Pedro; Vogler, Alfried; Kelly, Martyn (2018). "Implementation options for DNA-based identification into ecological status assessment under the European Water Framework Directive". Water Research. 138: 192–205. Bibcode:2018WatRe.138..192H. doi:10.1016/j.watres.2018.03.003. PMID 29602086. S2CID 5008250.
Deiner, Kristy; Bik, Holly M.; Mächler, Elvira; Seymour, Mathew; Lacoursière-Roussel, Anaïs; Altermatt, Florian; Creer, Simon; Bista, Iliana; Lodge, David M.; Vere, Natasha; Pfrender, Michael E.; Bernatchez, Louis (2017). "Environmental DNA metabarcoding: Transforming how we survey animal and plant communities". Molecular Ecology. 26 (21): 5872–5895. Bibcode:2017MolEc..26.5872D. doi:10.1111/mec.14350. hdl:20.500.11850/455284. PMID 28921802. S2CID 8001074.
Coissac, Eric; Riaz, Tiayyba; Puillandre, Nicolas (2012). "Bioinformatic challenges for DNA metabarcoding of plants and animals". Molecular Ecology. 21 (8): 1834–1847. Bibcode:2012MolEc..21.1834C. doi:10.1111/j.1365-294X.2012.05550.x. PMID 22486822. S2CID 24398174.
Eichmiller, Jessica J.; Best, Sendréa E.; Sorensen, Peter W. (2016). "Effects of Temperature and Trophic State on Degradation of Environmental DNA in Lake Water". Environmental Science & Technology. 50 (4): 1859–1867. Bibcode:2016EnST...50.1859E. doi:10.1021/acs.est.5b05672. PMID 26771292.
Carew, Melissa E.; Pettigrove, Vincent J.; Metzeling, Leon; Hoffmann, Ary A. (2013). "Environmental monitoring using next generation sequencing: Rapid identification of macroinvertebrate bioindicator species". Frontiers in Zoology. 10 (1): 45. doi:10.1186/1742-9994-10-45. PMC 3750358. PMID 23919569.
Qu, Chanjuan; Stewart, Kathryn A.; Clemente-Carvalho, Rute; Zheng, Jinsong; Wang, Yuxiang; Gong, Cheng; Ma, Limin; Zhao, Jianfu; Lougheed, Stephen C. (7 October 2020). "Comparing fish prey diversity for a critically endangered aquatic mammal in a reserve and the wild using eDNA metabarcoding". Scientific Reports. 10 (1): 16715. doi:10.1038/s41598-020-73648-2. ISSN 2045-2322. PMC 7542144. PMID 33028872.
Ficetola, Gentile Francesco; Taberlet, Pierre; Coissac, Eric (2016). "How to limit false positives in environmental DNA and metabarcoding?". Molecular Ecology Resources. 16 (3): 604–607. doi:10.1111/1755-0998.12508. PMID 27062589. S2CID 785279.
Cristescu, Melania E. (2014). "From barcoding single individuals to metabarcoding biological communities: Towards an integrative approach to the study of global biodiversity". Trends in Ecology & Evolution. 29 (10): 566–571. doi:10.1016/j.tree.2014.08.001. PMID 25175416. S2CID 18352572.
Gibson, Joel F.; Shokralla, Shadi; Curry, Colin; Baird, Donald J.; Monk, Wendy A.; King, Ian; Hajibabaei, Mehrdad (2015). "Large-Scale Biomonitoring of Remote and Threatened Ecosystems via High-Throughput Sequencing". PLOS ONE. 10 (10): e0138432. Bibcode:2015PLoSO..1038432G. doi:10.1371/journal.pone.0138432. PMC 4619546. PMID 26488407.
Chua, Physilia Y. S.; Bourlat, Sarah J.; Ferguson, Cameron; Korlevic, Petra; Zhao, Leia; Ekrem, Torbjørn; Meier, Rudolf; Lawniczak, Mara K. N. (10 March 2023). "Future of DNA-based insect monitoring". Trends in Genetics. 39 (7): 531–544. doi:10.1016/j.tig.2023.02.012. PMID 36907721. S2CID 257470926.
Lennon, J. T.; Muscarella, M. E.; Placella, S. A.; Lehmkuhl, B. K. (2018). "How, when, and Where Relic DNA Affects Microbial Diversity". mBio. 9 (3). doi:10.1128/mBio.00637-18. PMC 6016248. PMID 29921664. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Vlassov VV, Laktionov PP, Rykova EY (July 2007). "Extracellular nucleic acids". BioEssays. 29 (7): 654–67. doi:10.1002/bies.20604. PMID 17563084. S2CID 32463239.
Finkel SE, Kolter R (November 2001). "DNA as a nutrient: novel role for bacterial competence gene homologs". Journal of Bacteriology. 183 (21): 6288–93. doi:10.1128/JB.183.21.6288-6293.2001. PMC 100116. PMID 11591672.
Mulcahy H, Charron-Mazenod L, Lewenza S (November 2008). "Extracellular DNA chelates cations and induces antibiotic resistance in Pseudomonas aeruginosa biofilms". PLOS Pathogens. 4 (11): e1000213. doi:10.1371/journal.ppat.1000213. PMC 2581603. PMID 19023416.
Berne C, Kysela DT, Brun YV (August 2010). "A bacterial extracellular DNA inhibits settling of motile progeny cells within a biofilm". Molecular Microbiology. 77 (4): 815–29. doi:10.1111/j.1365-2958.2010.07267.x. PMC 2962764. PMID 20598083.
Whitchurch CB, Tolker-Nielsen T, Ragas PC, Mattick JS (February 2002). "Extracellular DNA required for bacterial biofilm formation". Science. 295 (5559): 1487. doi:10.1126/science.295.5559.1487. PMID 11859186.
Hu W, Li L, Sharma S, Wang J, McHardy I, Lux R, Yang Z, He X, Gimzewski JK, Li Y, Shi W (2012). "DNA builds and strengthens the extracellular matrix in Myxococcus xanthus biofilms by interacting with exopolysaccharides". PLOS ONE. 7 (12): e51905. Bibcode:2012PLoSO...751905H. doi:10.1371/journal.pone.0051905. PMC 3530553. PMID 23300576.
Foote AD, Thomsen PF, Sveegaard S, Wahlberg M, Kielgast J, Kyhn LA, et al. (2012). "Investigating the potential use of environmental DNA (eDNA) for genetic monitoring of marine mammals". PLOS ONE. 7 (8): e41781. Bibcode:2012PLoSO...741781F. doi:10.1371/journal.pone.0041781. PMC 3430683. PMID 22952587.
Nunn, Jack S.; Shafee, Thomas (2022). "Standardised Data on Initiatives – STARDIT: Beta Version". OSF Preprints. 8 (1): 31. doi:10.31219/osf.io/w5xj6. PMC 9294764. PMID 35854364. S2CID 242248848.
Bass, David (2015). "Diverse Applications of Environmental DNA Methods in Parasitology". Trends in Parasitology. 31 (10): 499–513. doi:10.1016/j.pt.2015.06.013. hdl:20.500.11850/105112. PMID 26433253.
Willerslev, Eske; Hansen, Anders J.; Binladen, Jonas; Brand, Tina B.; Gilbert, M. Thomas fP.; Shapiro, Beth; Bunce, Michael; Wiuf, Carsten; Gilichinsky, David A. (2 May 2003). "Diverse Plant and Animal Genetic Records from Holocene and Pleistocene Sediments". Science. 300 (5620): 791–795. Bibcode:2003Sci...300..791W. doi:10.1126/science.1084114. ISSN 0036-8075. PMID 12702808. S2CID 1222227.
Andersen, Kenneth; Bird, Karen Lise; Rasmussen, Morten; Haile, James; Breuning-Madsen, Henrik; Kjaer, Kurt H.; Orlando, Ludovic; Gilbert, M. Thomas P.; Willerslev, Eske (1 April 2012). "Meta-barcoding of 'dirt' DNA from soil reflects vertebrate biodiversity". Molecular Ecology. 21 (8): 1966–1979. Bibcode:2012MolEc..21.1966A. doi:10.1111/j.1365-294X.2011.05261.x. ISSN 1365-294X. PMID 21917035. S2CID 43351435.
Schultz, Martin (2015). "Modeling the Sensitivity of Field Surveys for Detection of Environmental DNA (eDNA)". PLOS ONE. 10 (10): 1–16. Bibcode:2015PLoSO..1041503S. doi:10.1371/journal.pone.0141503. ISSN 1932-6203. PMC 4624909. PMID 26509674.
Littlefair, Joanne E.; Hrenchuk, Lee E.; Blanchfield, Paul J.; Rennie, Michael D.; Cristescu, Melania E. (26 April 2020). "Thermal stratification and fish thermal preference explain vertical eDNA distributions in lakes". bioRxiv. 30 (13): 3083–3096. doi:10.1101/2020.04.21.042820. PMID 32888228. S2CID 218466213.
Souza, Lesley (2016). "Environmental DNA (eDNA) Detection Probability Is Influenced by Seasonal Activity of Organisms". PLOS ONE. 11 (10): 1–15. Bibcode:2016PLoSO..1165273D. doi:10.1371/journal.pone.0165273. ISSN 1932-6203. PMC 5077074. PMID 27776150.
Saeko, Matsuhashi (2016). "Evaluation of the Environmental DNA Method for Estimating Distribution and Biomass of Submerged Aquatic Plants". PLOS ONE. 11 (6): 1–14. Bibcode:2016PLoSO..1156217M. doi:10.1371/journal.pone.0156217. ISSN 1932-6203. PMC 4909283. PMID 27304876.
Tedersoo, Leho; Bahram, Mohammad; Põlme, Sergei; Kõljalg, Urmas; Yorou, Nourou S.; Wijesundera, Ravi; Ruiz, Luis Villarreal; Vasco-Palacios, Aída M.; Thu, Pham Quang (28 November 2014). "Global diversity and geography of soil fungi" (PDF). Science. 346 (6213): 1256688. doi:10.1126/science.1256688. hdl:10447/102930. ISSN 0036-8075. PMID 25430773. S2CID 206559506.
Jones, Rhys Aled; Brophy, Peter M.; Davis, Chelsea N.; Davies, Teri E.; Emberson, Holly; Rees Stevens, Pauline; Williams, Hefin Wyn (8 June 2018). "Detection of Galba truncatula, Fasciola hepatica and Calicophoron daubneyi environmental DNA within water sources on pasture land, a future tool for fluke control?". Parasites & Vectors. 11 (1): 342. doi:10.1186/s13071-018-2928-z. ISSN 1756-3305. PMC 5994096. PMID 29884202.
Bergman, Paul S.; Schumer, Gregg; Blankenship, Scott; Campbell, Elizabeth (2016). "Detection of Adult Green Sturgeon Using Environmental DNA Analysis". PLOS ONE. 11 (4): 1–8. Bibcode:2016PLoSO..1153500B. doi:10.1371/journal.pone.0153500. ISSN 1932-6203. PMC 4838217. PMID 27096433.
Seymour, Mathew; Durance, Isabelle; Cosby, Bernard J.; Ransom-Jones, Emma; Deiner, Kristy; Ormerod, Steve J.; Colbourne, John K.; Wilgar, Gregory; Carvalho, Gary R. (22 January 2018). "Acidity promotes degradation of multi-species environmental DNA in lotic mesocosms". Communications Biology. 1 (1): 4. doi:10.1038/s42003-017-0005-3. ISSN 2399-3642. PMC 6123786. PMID 30271891.
Collins, Rupert A.; Wangensteen, Owen S.; O’Gorman, Eoin J.; Mariani, Stefano; Sims, David W.; Genner, Martin J. (5 November 2018). "Persistence of environmental DNA in marine systems". Communications Biology. 1 (1): 185. doi:10.1038/s42003-018-0192-6. ISSN 2399-3642. PMC 6218555. PMID 30417122.
Hunter, Margaret E.; Dorazio, Robert M.; Butterfield, John S. S.; Meigs-Friend, Gaia; Nico, Leo G.; Ferrante, Jason A. (20 November 2016). "Detection limits of quantitative and digital PCR assays and their influence in presence-absence surveys of environmental DNA". Molecular Ecology Resources. 17 (2): 221–229. doi:10.1111/1755-0998.12619. ISSN 1755-098X. PMID 27768244.
Williams, Molly-Ann; O'Grady, Joyce; Ball, Bernard; Carlsson, Jens; Eyto, Elvira de; McGinnity, Philip; Jennings, Eleanor; Regan, Fiona; Parle-McDermott, Anne (2019). "The application of CRISPR-Cas for single species identification from environmental DNA". Molecular Ecology Resources. 19 (5): 1106–1114. doi:10.1111/1755-0998.13045. hdl:10468/8053. ISSN 1755-0998. PMID 31177615. S2CID 182949780.
Dirzo, R.; Young, H. S.; Galetti, M.; Ceballos, G.; Isaac, N. J. B.; Collen, B. (2014). "Defaunation in the Anthropocene" (PDF). Science. 345 (6195): 401–406. Bibcode:2014Sci...345..401D. doi:10.1126/science.1251817. PMID 25061202. S2CID 206555761.
Stork, Nigel E. (2018). "How Many Species of Insects and Other Terrestrial Arthropods Are There on Earth?". Annual Review of Entomology. 63: 31–45. doi:10.1146/annurev-ento-020117-043348. PMID 28938083. S2CID 23755007.
Joern, Anthony; Laws, Angela N. (2013). "Ecological Mechanisms Underlying Arthropod Species Diversity in Grasslands". Annual Review of Entomology. 58: 19–36. doi:10.1146/annurev-ento-120811-153540. PMID 22830354.
Biesmeijer, J. C.; Roberts, S. P.; Reemer, M.; Ohlemüller, R.; Edwards, M.; Peeters, T.; Schaffers, A. P.; Potts, S. G.; Kleukers, R.; Thomas, C. D.; Settele, J.; Kunin, W. E. (2006). "Parallel Declines in Pollinators and Insect-Pollinated Plants in Britain and the Netherlands". Science. 313 (5785): 351–354. Bibcode:2006Sci...313..351B. doi:10.1126/science.1127863. PMID 16857940. S2CID 16273738.
Goulson, D.; Nicholls, E.; Botias, C.; Rotheray, E. L. (2015). "Bee declines driven by combined stress from parasites, pesticides, and lack of flowers". Science. 347 (6229). doi:10.1126/science.1255957. PMID 25721506. S2CID 206558985.
Potts, Simon G.; Biesmeijer, Jacobus C.; Kremen, Claire; Neumann, Peter; Schweiger, Oliver; Kunin, William E. (2010). "Global pollinator declines: Trends, impacts and drivers". Trends in Ecology & Evolution. 25 (6): 345–353. doi:10.1016/j.tree.2010.01.007. PMID 20188434.
Sangster, George; Luksenburg, Jolanda A. (2015). "Declining Rates of Species Described per Taxonomist: Slowdown of Progress or a Side-effect of Improved Quality in Taxonomy?". Systematic Biology. 64 (1): 144–151. doi:10.1093/sysbio/syu069. PMID 25190593.
Wheeler, Q. D.; Raven, P. H.; Wilson, E. O. (2004). "Taxonomy: Impediment or Expedient?". Science. 303 (5656): 285. doi:10.1126/science.303.5656.285. hdl:1808/295. PMID 14726557. S2CID 27481787.
Bush, Alex; Sollmann, Rahel; Wilting, Andreas; Bohmann, Kristine; Cole, Beth; Balzter, Heiko; Martius, Christopher; Zlinszky, András; Calvignac-Spencer, Sébastien; Cobbold, Christina A.; Dawson, Terence P.; Emerson, Brent C.; Ferrier, Simon; Gilbert, M. Thomas P.; Herold, Martin; Jones, Laurence; Leendertz, Fabian H.; Matthews, Louise; Millington, James D. A.; Olson, John R.; Ovaskainen, Otso; Raffaelli, Dave; Reeve, Richard; Rödel, Mark-Oliver; Rodgers, Torrey W.; Snape, Stewart; Visseren-Hamakers, Ingrid; Vogler, Alfried P.; White, Piran C. L.; et al. (2017). "Connecting Earth observation to high-throughput biodiversity data" (PDF). Nature Ecology & Evolution. 1 (7): 176. Bibcode:2017NatEE...1..176B. doi:10.1038/s41559-017-0176. PMID 28812589. S2CID 205564094.
Elbrecht, Vasco; Taberlet, Pierre; Dejean, Tony; Valentini, Alice; Usseglio-Polatera, Philippe; Beisel, Jean-Nicolas; Coissac, Eric; Boyer, Frederic; Leese, Florian (2016). "Testing the potential of a ribosomal 16S marker for DNA metabarcoding of insects". PeerJ. 4: e1966. doi:10.7717/peerj.1966. PMC 4841222. PMID 27114891.
Hajibabaei, Mehrdad; Shokralla, Shadi; Zhou, Xin; Singer, Gregory A. C.; Baird, Donald J. (2011). "Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos". PLOS ONE. 6 (4): e17497. Bibcode:2011PLoSO...617497H. doi:10.1371/journal.pone.0017497. PMC 3076369. PMID 21533287.
Xu, Charles C. Y.; Yen, Ivy J.; Bowman, Dean; Turner, Cameron R. (2015). "Spider Web DNA: A New Spin on Noninvasive Genetics of Predator and Prey". PLOS ONE. 10 (11): e0142503. Bibcode:2015PLoSO..1042503X. doi:10.1371/journal.pone.0142503. PMC 4659541. PMID 26606730. S2CID 5331545.
Derocles, Stéphane A. P.; Evans, Darren M.; Nichols, Paul C.; Evans, S. Aifionn; Lunt, David H. (2015). "Determining Plant – Leaf Miner – Parasitoid Interactions: A DNA Barcoding Approach". PLOS ONE. 10 (2): e0117872. Bibcode:2015PLoSO..1017872D. doi:10.1371/journal.pone.0117872. PMC 4339730. PMID 25710377.
Taberlet, Pierre; Coissac, Eric; Hajibabaei, Mehrdad; Rieseberg, Loren H. (2012). "Environmental DNA". Molecular Ecology. 21 (8): 1789–1793. Bibcode:2012MolEc..21.1789T. doi:10.1111/j.1365-294X.2012.05542.x. PMID 22486819. S2CID 3961830.
Thomsen, Philip Francis; Kielgast, JOS; Iversen, Lars L.; Wiuf, Carsten; Rasmussen, Morten; Gilbert, M. Thomas P.; Orlando, Ludovic; Willerslev, Eske (2012). "Monitoring endangered freshwater biodiversity using environmental DNA". Molecular Ecology. 21 (11): 2565–2573. Bibcode:2012MolEc..21.2565T. doi:10.1111/j.1365-294X.2011.05418.x. PMID 22151771.
Zinger, Lucie; Taberlet, Pierre; Schimann, Heidy; Bonin, Aurélie; Boyer, Frédéric; De Barba, Marta; Gaucher, Philippe; Gielly, Ludovic; Giguet-Covex, Charline; Iribar, Amaia; Réjou-Méchain, Maxime; Rayé, Gilles; Rioux, Delphine; Schilling, Vincent; Tymen, Blaise; Viers, Jérôme; Zouiten, Cyril; Thuiller, Wilfried; Coissac, Eric; Chave, Jérôme (2019). "Body size determines soil community assembly in a tropical forest". Molecular Ecology. 28 (3): 528–543. Bibcode:2019MolEc..28..528Z. doi:10.1111/mec.14919. PMID 30375061. S2CID 53114166.
Jurado-Rivera, José A.; Vogler, Alfried P.; Reid, Chris A.M; Petitpierre, Eduard; Gómez-Zurita, Jesús (2009). "DNA barcoding insect–host plant associations". Proceedings of the Royal Society B: Biological Sciences. 276 (1657): 639–648. doi:10.1098/rspb.2008.1264. PMC 2660938. PMID 19004756.
Paula, Débora P.; Linard, Benjamin; Crampton-Platt, Alex; Srivathsan, Amrita; Timmermans, Martijn J. T. N.; Sujii, Edison R.; Pires, Carmen S. S.; Souza, Lucas M.; Andow, David A.; Vogler, Alfried P. (2016). "Uncovering Trophic Interactions in Arthropod Predators through DNA Shotgun-Sequencing of Gut Contents". PLOS ONE. 11 (9): e0161841. Bibcode:2016PLoSO..1161841P. doi:10.1371/journal.pone.0161841. PMC 5021305. PMID 27622637.
Bohmann, Kristine; Monadjem, Ara; Lehmkuhl Noer, Christina; Rasmussen, Morten; Zeale, Matt R. K.; Clare, Elizabeth; Jones, Gareth; Willerslev, Eske; Gilbert, M. Thomas P. (2011). "Molecular Diet Analysis of Two African Free-Tailed Bats (Molossidae) Using High Throughput Sequencing". PLOS ONE. 6 (6): e21441. Bibcode:2011PLoSO...621441B. doi:10.1371/journal.pone.0021441. PMC 3120876. PMID 21731749.
Vesterinen, Eero J.; Lilley, Thomas; Laine, Veronika N.; Wahlberg, Niklas (2013). "Next Generation Sequencing of Fecal DNA Reveals the Dietary Diversity of the Widespread Insectivorous Predator Daubenton's Bat (Myotis daubentonii) in Southwestern Finland". PLOS ONE. 8 (11): e82168. Bibcode:2013PLoSO...882168V. doi:10.1371/journal.pone.0082168. PMC 3842304. PMID 24312405.
Bell, Karen L.; Fowler, Julie; Burgess, Kevin S.; Dobbs, Emily K.; Gruenewald, David; Lawley, Brice; Morozumi, Connor; Brosi, Berry J. (2017). "Applying Pollen DNA Metabarcoding to the Study of Plant–Pollinator Interactions". Applications in Plant Sciences. 5 (6). doi:10.3732/apps.1600124. PMC 5499302. PMID 28690929. S2CID 6590244.
Pornon, André; Escaravage, Nathalie; Burrus, Monique; Holota, Hélène; Khimoun, Aurélie; Mariette, Jérome; Pellizzari, Charlène; Iribar, Amaia; Etienne, Roselyne; Taberlet, Pierre; Vidal, Marie; Winterton, Peter; Zinger, Lucie; Andalo, Christophe (2016). "Using metabarcoding to reveal and quantify plant-pollinator interactions". Scientific Reports. 6: 27282. Bibcode:2016NatSR...627282P. doi:10.1038/srep27282. PMC 4891682. PMID 27255732.
Lynggaard, Christina; Bertelsen, Mads Frost; Jensen, Casper V.; Johnson, Matthew S.; Frøslev, Tobias Guldberg; Olsen, Morten Tange; Bohmann, Kristine (6 January 2022). "Airborne environmental DNA for terrestrial vertebrate community monitoring". Current Biology. 32 (3): 701–707.e5. Bibcode:2022CBio...32E.701L. doi:10.1016/j.cub.2021.12.014. PMC 8837273. PMID 34995490. S2CID 245772800.
Clare, Elizabeth L.; Economou, Chloe K.; Bennett, Frances J.; Dyer, Caitlin E.; Adams, Katherine; McRobie, Benjamin; Drinkwater, Rosie; Littlefair, Joanne E. (January 2022). "Measuring biodiversity from DNA in the air". Current Biology. 32 (3): 693–700.e5. Bibcode:2022CBio...32E.693C. doi:10.1016/j.cub.2021.11.064. PMID 34995488. S2CID 245772825.
Clare, Elizabeth L.; Economou, Chloe K.; Faulkes, Chris G.; Gilbert, James D.; Bennett, Frances; Drinkwater, Rosie; Littlefair, Joanne E. (2021). "EDNAir: Proof of concept that animal DNA can be collected from air sampling". PeerJ. 9: e11030. doi:10.7717/peerj.11030. PMC 8019316. PMID 33850648. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Métris, Kimberly L.; Métris, Jérémy (14 April 2023). "Aircraft surveys for air eDNA: probing biodiversity in the sky". PeerJ. 11: e15171. doi:10.7717/peerj.15171. ISSN 2167-8359. PMC 10108859. PMID 37077310.
Kenneth T. Frank; Brian Petrie; Jae S. Choi; William C. Leggett (2005). "Trophic Cascades in a Formerly Cod-Dominated Ecosystem". Science. 308 (5728): 1621–1623. Bibcode:2005Sci...308.1621F. doi:10.1126/science.1113075. PMID 15947186. S2CID 45088691.
Pusceddu, A.; Bianchelli, S.; Martin, J.; Puig, P.; Palanques, A.; Masque, P.; Danovaro, R. (2014). "Chronic and intensive bottom trawling impairs deep-sea biodiversity and ecosystem functioning". Proceedings of the National Academy of Sciences. 111 (24): 8861–8866. Bibcode:2014PNAS..111.8861P. doi:10.1073/pnas.1405454111. PMC 4066481. PMID 24843122.
Salter, Ian; Joensen, Mourits; Kristiansen, Regin; Steingrund, Petur; Vestergaard, Poul (2019). "Environmental DNA concentrations are correlated with regional biomass of Atlantic cod in oceanic waters". Communications Biology. 2: 461. doi:10.1038/s42003-019-0696-8. PMC 6904555. PMID 31840106. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Goldberg, Caren S.; Pilliod, David S.; Arkle, Robert S.; Waits, Lisette P. (2011). "Molecular Detection of Vertebrates in Stream Water: A Demonstration Using Rocky Mountain Tailed Frogs and Idaho Giant Salamanders". PLOS ONE. 6 (7): e22746. Bibcode:2011PLoSO...622746G. doi:10.1371/journal.pone.0022746. PMC 3144250. PMID 21818382.
Valentini, Alice; Taberlet, Pierre; Miaud, Claude; Civade, Raphaël; Herder, Jelger; Thomsen, Philip Francis; Bellemain, Eva; Besnard, Aurélien; Coissac, Eric; Boyer, Frédéric; Gaboriaud, Coline; Jean, Pauline; Poulet, Nicolas; Roset, Nicolas; Copp, Gordon H.; Geniez, Philippe; Pont, Didier; Argillier, Christine; Baudoin, Jean-Marc; Peroux, Tiphaine; Crivelli, Alain J.; Olivier, Anthony; Acqueberge, Manon; Le Brun, Matthieu; Møller, Peter R.; Willerslev, Eske; Dejean, Tony (2016). "Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding" (PDF). Molecular Ecology. 25 (4): 929–942. Bibcode:2016MolEc..25..929V. doi:10.1111/mec.13428. PMID 26479867. S2CID 2801412.
Stoeckle, Mark Y.; Soboleva, Lyubov; Charlop-Powers, Zachary (2017). "Aquatic environmental DNA detects seasonal fish abundance and habitat preference in an urban estuary". PLOS ONE. 12 (4): e0175186. Bibcode:2017PLoSO..1275186S. doi:10.1371/journal.pone.0175186. PMC 5389620. PMID 28403183.
Thomsen, Philip Francis; Kielgast, Jos; Iversen, Lars Lønsmann; Møller, Peter Rask; Rasmussen, Morten; Willerslev, Eske (2012). "Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples". PLOS ONE. 7 (8): e41732. Bibcode:2012PLoSO...741732T. doi:10.1371/journal.pone.0041732. PMC 3430657. PMID 22952584.
Thomsen, Philip Francis; Møller, Peter Rask; Sigsgaard, Eva Egelyng; Knudsen, Steen Wilhelm; Jørgensen, Ole Ankjær; Willerslev, Eske (2016). "Environmental DNA from Seawater Samples Correlate with Trawl Catches of Subarctic, Deepwater Fishes". PLOS ONE. 11 (11): e0165252. Bibcode:2016PLoSO..1165252T. doi:10.1371/journal.pone.0165252. PMC 5112899. PMID 27851757.
Takahara, Teruhiko; Minamoto, Toshifumi; Yamanaka, Hiroki; Doi, Hideyuki; Kawabata, Zen'Ichiro (2012). "Estimation of Fish Biomass Using Environmental DNA". PLOS ONE. 7 (4): e35868. Bibcode:2012PLoSO...735868T. doi:10.1371/journal.pone.0035868. PMC 3338542. PMID 22563411.
Doi, Hideyuki; Uchii, Kimiko; Takahara, Teruhiko; Matsuhashi, Saeko; Yamanaka, Hiroki; Minamoto, Toshifumi (2015). "Use of Droplet Digital PCR for Estimation of Fish Abundance and Biomass in Environmental DNA Surveys". PLOS ONE. 10 (3): e0122763. Bibcode:2015PLoSO..1022763D. doi:10.1371/journal.pone.0122763. PMC 4370432. PMID 25799582.
Lacoursière-Roussel, Anaïs; Rosabal, Maikel; Bernatchez, Louis (2016). "Estimating fish abundance and biomass from eDNA concentrations: Variability among capture methods and environmental conditions". Molecular Ecology Resources. 16 (6): 1401–1414. doi:10.1111/1755-0998.12522. PMID 26946353. S2CID 4507565.
Maruyama, Atsushi; Nakamura, Keisuke; Yamanaka, Hiroki; Kondoh, Michio; Minamoto, Toshifumi (2014). "The Release Rate of Environmental DNA from Juvenile and Adult Fish". PLOS ONE. 9 (12): e114639. Bibcode:2014PLoSO...9k4639M. doi:10.1371/journal.pone.0114639. PMC 4257714. PMID 25479160.
Salter, Ian (2018). "Seasonal variability in the persistence of dissolved environmental DNA (EDNA) in a marine system: The role of microbial nutrient limitation". PLOS ONE. 13 (2): e0192409. Bibcode:2018PLoSO..1392409S. doi:10.1371/journal.pone.0192409. PMC 5825020. PMID 29474423.
Buxton, Andrew S.; Groombridge, Jim J.; Griffiths, Richard A. (2018). "Seasonal variation in environmental DNA detection in sediment and water samples". PLOS ONE. 13 (1): e0191737. Bibcode:2018PLoSO..1391737B. doi:10.1371/journal.pone.0191737. PMC 5774844. PMID 29352294.
Collins, Rupert A.; Wangensteen, Owen S.; o'Gorman, Eoin J.; Mariani, Stefano; Sims, David W.; Genner, Martin J. (2018). "Persistence of environmental DNA in marine systems". Communications Biology. 1: 185. doi:10.1038/s42003-018-0192-6. PMC 6218555. PMID 30417122.
Eichmiller, Jessica J.; Bajer, Przemyslaw G.; Sorensen, Peter W. (2014). "The Relationship between the Distribution of Common Carp and Their Environmental DNA in a Small Lake". PLOS ONE. 9 (11): e112611. Bibcode:2014PLoSO...9k2611E. doi:10.1371/journal.pone.0112611. PMC 4226586. PMID 25383965.
Yamamoto, Satoshi; Minami, Kenji; Fukaya, Keiichi; Takahashi, Kohji; Sawada, Hideki; Murakami, Hiroaki; Tsuji, Satsuki; Hashizume, Hiroki; Kubonaga, Shou; Horiuchi, Tomoya; Hongo, Masamichi; Nishida, Jo; Okugawa, Yuta; Fujiwara, Ayaka; Fukuda, Miho; Hidaka, Shunsuke; Suzuki, Keita W.; Miya, Masaki; Araki, Hitoshi; Yamanaka, Hiroki; Maruyama, Atsushi; Miyashita, Kazushi; Masuda, Reiji; Minamoto, Toshifumi; Kondoh, Michio (2016). "Environmental DNA as a 'Snapshot' of Fish Distribution: A Case Study of Japanese Jack Mackerel in Maizuru Bay, Sea of Japan". PLOS ONE. 11 (3): e0149786. Bibcode:2016PLoSO..1149786Y. doi:10.1371/journal.pone.0149786. PMC 4775019. PMID 26933889. S2CID 5168061.
Corinaldesi, C.; Tangherlini, M.; Manea, E.; Dell'Anno, A. (2018). "Extracellular DNA as a genetic recorder of microbial diversity in benthic deep-sea ecosystems". Scientific Reports. 8 (1): 1839. Bibcode:2018NatSR...8.1839C. doi:10.1038/s41598-018-20302-7. PMC 5789842. PMID 29382896. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Dell'Anno, A.; Danovaro, R. (2005). "Extracellular DNA Plays a Key Role in Deep-Sea Ecosystem Functioning". Science. 309 (5744): 2179. doi:10.1126/science.1117475. PMID 16195451. S2CID 39216262.
Dell'Anno, Antonio; Corinaldesi, Cinzia; Danovaro, Roberto (2015). "Virus decomposition provides an important contribution to benthic deep-sea ecosystem functioning". Proceedings of the National Academy of Sciences. 112 (16): E2014–E2019. Bibcode:2015PNAS..112E2014D. doi:10.1073/pnas.1422234112. PMC 4413343. PMID 25848024.
Nielsen, Kaare M.; Johnsen, Pål J.; Bensasson, Douda; Daffonchio, Daniele (2007). "Release and persistence of extracellular DNA in the environment". Environmental Biosafety Research. 6 (1–2): 37–53. doi:10.1051/ebr:2007031. PMID 17961479.
Coolen, Marco J. L.; Overmann, Jörg (1998). "Analysis of Subfossil Molecular Remains of Purple Sulfur Bacteria in a Lake Sediment". Applied and Environmental Microbiology. 64 (11): 4513–4521. Bibcode:1998ApEnM..64.4513C. doi:10.1128/AEM.64.11.4513-4521.1998. PMC 106678. PMID 9797316.
Coolen, M. J. L.; Orsi, W. D.; Balkema, C.; Quince, C.; Harris, K.; Sylva, S. P.; Filipova-Marinova, M.; Giosan, L. (2013). "Evolution of the plankton paleome in the Black Sea from the Deglacial to Anthropocene". Proceedings of the National Academy of Sciences. 110 (21): 8609–8614. Bibcode:2013PNAS..110.8609C. doi:10.1073/pnas.1219283110. PMC 3666672. PMID 23650351.
Corinaldesi, C.; Tangherlini, M.; Luna, G. M.; Dell'Anno, A. (2014). "Extracellular DNA can preserve the genetic signatures of present and past viral infection events in deep hypersaline anoxic basins". Proceedings of the Royal Society B: Biological Sciences. 281 (1780). doi:10.1098/rspb.2013.3299. PMC 4027399. PMID 24523277. S2CID 1214760.
Coolen, M. J. L.; Cypionka, H.; Sass, A. M.; Sass, H.; Overmann, J. (2002). "Ongoing Modification of Mediterranean Pleistocene Sapropels Mediated by Prokaryotes". Science. 296 (5577): 2407–2410. Bibcode:2002Sci...296.2407C. doi:10.1126/science.1071893. PMID 12089447. S2CID 33722848.
Coolen, Marco J. L.; Overmann, Jörg (2007). "217 000-year-old DNA sequences of green sulfur bacteria in Mediterranean sapropels and their implications for the reconstruction of the paleoenvironment". Environmental Microbiology. 9 (1): 238–249. doi:10.1111/j.1462-2920.2006.01134.x. hdl:1912/1506. PMID 17227428.
Dell'Anno, Antonio; Corinaldesi, Cinzia; Stavrakakis, Spyros; Lykousis, Vasilis; Danovaro, Roberto (2005). "Pelagic-Benthic Coupling and Diagenesis of Nucleic Acids in a Deep-Sea Continental Margin and an Open-Slope System of the Eastern Mediterranean". Applied and Environmental Microbiology. 71 (10): 6070–6076. Bibcode:2005ApEnM..71.6070D. doi:10.1128/AEM.71.10.6070-6076.2005. PMC 1265925. PMID 16204523.
Jørgensen, Bo Barker; Boetius, Antje (2007). "Feast and famine — microbial life in the deep-sea bed". Nature Reviews Microbiology. 5 (10): 770–781. doi:10.1038/nrmicro1745. PMID 17828281. S2CID 22970703.
Orcutt, B. N.; Sylvan, J. B.; Knab, N. J.; Edwards, K. J. (2011). "Microbial Ecology of the Dark Ocean above, at, and below the Seafloor". Microbiology and Molecular Biology Reviews. 75 (2): 361–422. doi:10.1128/MMBR.00039-10. PMC 3122624. PMID 21646433.
Zinger, Lucie; Amaral-Zettler, Linda A.; Fuhrman, Jed A.; Horner-Devine, M. Claire; Huse, Susan M.; Welch, David B. Mark; Martiny, Jennifer B. H.; Sogin, Mitchell; Boetius, Antje; Ramette, Alban (2011). "Global Patterns of Bacterial Beta-Diversity in Seafloor and Seawater Ecosystems". PLOS ONE. 6 (9): e24570. Bibcode:2011PLoSO...624570Z. doi:10.1371/journal.pone.0024570. PMC 3169623. PMID 21931760.
Bienhold, Christina; Boetius, Antje; Ramette, Alban (2012). "The energy–diversity relationship of complex bacterial communities in Arctic deep-sea sediments". The ISME Journal. 6 (4): 724–732. Bibcode:2012ISMEJ...6..724B. doi:10.1038/ismej.2011.140. PMC 3309351. PMID 22071347.
Zinger, L.; Boetius, A.; Ramette, A. (2014). "Bacterial taxa–area and distance–decay relationships in marine environments". Molecular Ecology. 23 (4): 954–964. Bibcode:2014MolEc..23..954Z. doi:10.1111/mec.12640. PMC 4230465. PMID 24460915.
Drummond, Alexei J.; Newcomb, Richard D.; Buckley, Thomas R.; Xie, Dong; Dopheide, Andrew; Potter, Benjamin CM; Heled, Joseph; Ross, Howard A.; Tooman, Leah; Grosser, Stefanie; Park, Duckchul; Demetras, Nicholas J.; Stevens, Mark I.; Russell, James C.; Anderson, Sandra H.; Carter, Anna; Nelson, Nicola (2015). "Evaluating a multigene environmental DNA approach for biodiversity assessment". GigaScience. 4: 46. doi:10.1186/s13742-015-0086-1. PMC 4595072. PMID 26445670. S2CID 28846124.
Corinaldesi, C.; Beolchini, F.; Dell'Anno, A. (2008). "Damage and degradation rates of extracellular DNA in marine sediments: Implications for the preservation of gene sequences". Molecular Ecology. 17 (17): 3939–3951. Bibcode:2008MolEc..17.3939C. doi:10.1111/j.1365-294X.2008.03880.x. PMID 18643876. S2CID 22062643.
Pedersen, Mikkel Winther; Overballe-Petersen, Søren; Ermini, Luca; Sarkissian, Clio Der; Haile, James; Hellstrom, Micaela; Spens, Johan; Thomsen, Philip Francis; Bohmann, Kristine; Cappellini, Enrico; Schnell, Ida Bærholm; Wales, Nathan A.; Carøe, Christian; Campos, Paula F.; Schmidt, Astrid M. Z.; Gilbert, M. Thomas P.; Hansen, Anders J.; Orlando, Ludovic; Willerslev, Eske (2015). "Ancient and modern environmental DNA". Philosophical Transactions of the Royal Society B: Biological Sciences. 370 (1660). doi:10.1098/rstb.2013.0383. PMC 4275890. PMID 25487334.
Parducci, Laura; Bennett, Keith D.; Ficetola, Gentile Francesco; Alsos, Inger Greve; Suyama, Yoshihisa; Wood, Jamie R.; Pedersen, Mikkel Winther (2017). "Ancient plant DNA in lake sediments". New Phytologist. 214 (3): 924–942. doi:10.1111/nph.14470. hdl:10023/13063. PMID 28370025.
De Vargas, C.; et al. (2015). "Eukaryotic plankton diversity in the sunlit ocean". Science. 348 (6237). doi:10.1126/science.1261605. hdl:10261/117736. PMID 25999516. S2CID 12853481.
De Schepper, Stijn; Ray, Jessica L.; Skaar, Katrine Sandnes; Sadatzki, Henrik; Ijaz, Umer Z.; Stein, Ruediger; Larsen, Aud (2019). "The potential of sedimentary ancient DNA for reconstructing past sea ice evolution". The ISME Journal. 13 (10): 2566–2577. Bibcode:2019ISMEJ..13.2566D. doi:10.1038/s41396-019-0457-1. PMC 6776040. PMID 31235841.
Barrenechea Angeles, Inès; Lejzerowicz, Franck; Cordier, Tristan; Scheplitz, Janin; Kucera, Michal; Ariztegui, Daniel; Pawlowski, Jan; Morard, Raphaël (2020). "Planktonic foraminifera eDNA signature deposited on the seafloor remains preserved after burial in marine sediments". Scientific Reports. 10 (1): 20351. doi:10.1038/s41598-020-77179-8. PMC 7684305. PMID 33230106. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Corinaldesi, C.; Beolchini, F.; Dell'Anno, A. (2008). "Damage and degradation rates of extracellular DNA in marine sediments: Implications for the preservation of gene sequences". Molecular Ecology. 17 (17): 3939–3951. Bibcode:2008MolEc..17.3939C. doi:10.1111/j.1365-294X.2008.03880.x. PMID 18643876. S2CID 22062643.
Corinaldesi, C.; Barucca, M.; Luna, G. M.; Dell'Anno, A. (2011). "Preservation, origin and genetic imprint of extracellular DNA in permanently anoxic deep-sea sediments". Molecular Ecology. 20 (3): 642–654. Bibcode:2011MolEc..20..642C. doi:10.1111/j.1365-294X.2010.04958.x. PMID 21155913. S2CID 22920579.
Guillou, Laure; et al. (2012). "The Protist Ribosomal Reference database (PR2): A catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy". Nucleic Acids Research. 41 (Database issue): D597–D604. doi:10.1093/nar/gks1160. PMC 3531120. PMID 23193267.
Morard, Raphaël; Darling, Kate F.; Mahé, Frédéric; Audic, Stéphane; Ujiié, Yurika; Weiner, Agnes K. M.; André, Aurore; Seears, Heidi A.; Wade, Christopher M.; Quillévéré, Frédéric; Douady, Christophe J.; Escarguel, Gilles; De Garidel-Thoron, Thibault; Siccha, Michael; Kucera, Michal; De Vargas, Colomban (2015). "PFR2: A curated database of planktonic foraminifera 18S ribosomal DNA as a resource for studies of plankton ecology, biogeography and evolution" (PDF). Molecular Ecology Resources. 15 (6): 1472–1485. doi:10.1111/1755-0998.12410. PMID 25828689. S2CID 39066123.
Morard, Raphaël; Vollmar, Nele M.; Greco, Mattia; Kucera, Michal (2019). "Unassigned diversity of planktonic foraminifera from environmental sequencing revealed as known but neglected species". PLOS ONE. 14 (3): e0213936. Bibcode:2019PLoSO..1413936M. doi:10.1371/journal.pone.0213936. PMC 6428320. PMID 30897140.
Siccha, Michael; Kucera, Michal (2017). "ForCenS, a curated database of planktonic foraminifera census counts in marine surface sediment samples". Scientific Data. 4: 170109. Bibcode:2017NatSD...470109S. doi:10.1038/sdata.2017.109. PMC 5566098. PMID 28829434.
Lejzerowicz, Franck; Esling, Philippe; Majewski, Wojciech; Szczuciński, Witold; Decelle, Johan; Obadia, Cyril; Arbizu, Pedro Martinez; Pawlowski, Jan (2013). "Ancient DNA complements microfossil record in deep-sea subsurface sediments". Biology Letters. 9 (4). doi:10.1098/rsbl.2013.0283. PMC 3730641. PMID 23658006.
Pawłowska, J.; Lejzerowicz, F.; Esling, P.; Szczuciński, W.; Zajączkowski, M.; Pawlowski, J. (2014). "Ancient DNA sheds new light on the Svalbard foraminiferal fossil record of the last millennium". Geobiology. 12 (4): 277–288. Bibcode:2014Gbio...12..277P. doi:10.1111/gbi.12087. PMID 24730667. S2CID 205140049.

ncbi.nlm.nih.gov

Thomsen, Philip Francis; Sigsgaard, Eva E. (2019). "Environmental DNA metabarcoding of wild flowers reveals diverse communities of terrestrial arthropods". Ecology and Evolution. 9 (4): 1665–1679. Bibcode:2019EcoEv...9.1665T. doi:10.1002/ece3.4809. PMC 6392377. PMID 30847063. S2CID 71143282. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Fahner, Nicole (2016). "Large-Scale Monitoring of Plants through Environmental DNA Metabarcoding of Soil: Recovery, Resolution, and Annotation of Four DNA Markers". PLOS ONE. 11 (6): 1–16. Bibcode:2016PLoSO..1157505F. doi:10.1371/journal.pone.0157505. ISSN 1932-6203. PMC 4911152. PMID 27310720 – via Directory of Open Access Journals.
Kjær, Kurt H.; et al. (7 December 2022). "A 2-million-year-old ecosystem in Greenland uncovered by environmental DNA". Nature. 612 (7939): 283–291. Bibcode:2022Natur.612..283K. doi:10.1038/s41586-022-05453-y. PMC 9729109. PMID 36477129. S2CID 254367944.
Ficetola, Gentile Francesco; Miaud, Claude; Pompanon, François; Taberlet, Pierre (2008). "Species detection using environmental DNA from water samples". Biology Letters. 4 (4): 423–425. doi:10.1098/rsbl.2008.0118. PMC 2610135. PMID 18400683.
Carew, Melissa E.; Pettigrove, Vincent J.; Metzeling, Leon; Hoffmann, Ary A. (2013). "Environmental monitoring using next generation sequencing: Rapid identification of macroinvertebrate bioindicator species". Frontiers in Zoology. 10 (1): 45. doi:10.1186/1742-9994-10-45. PMC 3750358. PMID 23919569.
Qu, Chanjuan; Stewart, Kathryn A.; Clemente-Carvalho, Rute; Zheng, Jinsong; Wang, Yuxiang; Gong, Cheng; Ma, Limin; Zhao, Jianfu; Lougheed, Stephen C. (7 October 2020). "Comparing fish prey diversity for a critically endangered aquatic mammal in a reserve and the wild using eDNA metabarcoding". Scientific Reports. 10 (1): 16715. doi:10.1038/s41598-020-73648-2. ISSN 2045-2322. PMC 7542144. PMID 33028872.
Gibson, Joel F.; Shokralla, Shadi; Curry, Colin; Baird, Donald J.; Monk, Wendy A.; King, Ian; Hajibabaei, Mehrdad (2015). "Large-Scale Biomonitoring of Remote and Threatened Ecosystems via High-Throughput Sequencing". PLOS ONE. 10 (10): e0138432. Bibcode:2015PLoSO..1038432G. doi:10.1371/journal.pone.0138432. PMC 4619546. PMID 26488407.
Lennon, J. T.; Muscarella, M. E.; Placella, S. A.; Lehmkuhl, B. K. (2018). "How, when, and Where Relic DNA Affects Microbial Diversity". mBio. 9 (3). doi:10.1128/mBio.00637-18. PMC 6016248. PMID 29921664. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Finkel SE, Kolter R (November 2001). "DNA as a nutrient: novel role for bacterial competence gene homologs". Journal of Bacteriology. 183 (21): 6288–93. doi:10.1128/JB.183.21.6288-6293.2001. PMC 100116. PMID 11591672.
Mulcahy H, Charron-Mazenod L, Lewenza S (November 2008). "Extracellular DNA chelates cations and induces antibiotic resistance in Pseudomonas aeruginosa biofilms". PLOS Pathogens. 4 (11): e1000213. doi:10.1371/journal.ppat.1000213. PMC 2581603. PMID 19023416.
Berne C, Kysela DT, Brun YV (August 2010). "A bacterial extracellular DNA inhibits settling of motile progeny cells within a biofilm". Molecular Microbiology. 77 (4): 815–29. doi:10.1111/j.1365-2958.2010.07267.x. PMC 2962764. PMID 20598083.
Hu W, Li L, Sharma S, Wang J, McHardy I, Lux R, Yang Z, He X, Gimzewski JK, Li Y, Shi W (2012). "DNA builds and strengthens the extracellular matrix in Myxococcus xanthus biofilms by interacting with exopolysaccharides". PLOS ONE. 7 (12): e51905. Bibcode:2012PLoSO...751905H. doi:10.1371/journal.pone.0051905. PMC 3530553. PMID 23300576.
Foote AD, Thomsen PF, Sveegaard S, Wahlberg M, Kielgast J, Kyhn LA, et al. (2012). "Investigating the potential use of environmental DNA (eDNA) for genetic monitoring of marine mammals". PLOS ONE. 7 (8): e41781. Bibcode:2012PLoSO...741781F. doi:10.1371/journal.pone.0041781. PMC 3430683. PMID 22952587.
Nunn, Jack S.; Shafee, Thomas (2022). "Standardised Data on Initiatives – STARDIT: Beta Version". OSF Preprints. 8 (1): 31. doi:10.31219/osf.io/w5xj6. PMC 9294764. PMID 35854364. S2CID 242248848.
Schultz, Martin (2015). "Modeling the Sensitivity of Field Surveys for Detection of Environmental DNA (eDNA)". PLOS ONE. 10 (10): 1–16. Bibcode:2015PLoSO..1041503S. doi:10.1371/journal.pone.0141503. ISSN 1932-6203. PMC 4624909. PMID 26509674.
Souza, Lesley (2016). "Environmental DNA (eDNA) Detection Probability Is Influenced by Seasonal Activity of Organisms". PLOS ONE. 11 (10): 1–15. Bibcode:2016PLoSO..1165273D. doi:10.1371/journal.pone.0165273. ISSN 1932-6203. PMC 5077074. PMID 27776150.
Saeko, Matsuhashi (2016). "Evaluation of the Environmental DNA Method for Estimating Distribution and Biomass of Submerged Aquatic Plants". PLOS ONE. 11 (6): 1–14. Bibcode:2016PLoSO..1156217M. doi:10.1371/journal.pone.0156217. ISSN 1932-6203. PMC 4909283. PMID 27304876.
Jones, Rhys Aled; Brophy, Peter M.; Davis, Chelsea N.; Davies, Teri E.; Emberson, Holly; Rees Stevens, Pauline; Williams, Hefin Wyn (8 June 2018). "Detection of Galba truncatula, Fasciola hepatica and Calicophoron daubneyi environmental DNA within water sources on pasture land, a future tool for fluke control?". Parasites & Vectors. 11 (1): 342. doi:10.1186/s13071-018-2928-z. ISSN 1756-3305. PMC 5994096. PMID 29884202.
Bergman, Paul S.; Schumer, Gregg; Blankenship, Scott; Campbell, Elizabeth (2016). "Detection of Adult Green Sturgeon Using Environmental DNA Analysis". PLOS ONE. 11 (4): 1–8. Bibcode:2016PLoSO..1153500B. doi:10.1371/journal.pone.0153500. ISSN 1932-6203. PMC 4838217. PMID 27096433.
Seymour, Mathew; Durance, Isabelle; Cosby, Bernard J.; Ransom-Jones, Emma; Deiner, Kristy; Ormerod, Steve J.; Colbourne, John K.; Wilgar, Gregory; Carvalho, Gary R. (22 January 2018). "Acidity promotes degradation of multi-species environmental DNA in lotic mesocosms". Communications Biology. 1 (1): 4. doi:10.1038/s42003-017-0005-3. ISSN 2399-3642. PMC 6123786. PMID 30271891.
Collins, Rupert A.; Wangensteen, Owen S.; O’Gorman, Eoin J.; Mariani, Stefano; Sims, David W.; Genner, Martin J. (5 November 2018). "Persistence of environmental DNA in marine systems". Communications Biology. 1 (1): 185. doi:10.1038/s42003-018-0192-6. ISSN 2399-3642. PMC 6218555. PMID 30417122.
Elbrecht, Vasco; Taberlet, Pierre; Dejean, Tony; Valentini, Alice; Usseglio-Polatera, Philippe; Beisel, Jean-Nicolas; Coissac, Eric; Boyer, Frederic; Leese, Florian (2016). "Testing the potential of a ribosomal 16S marker for DNA metabarcoding of insects". PeerJ. 4: e1966. doi:10.7717/peerj.1966. PMC 4841222. PMID 27114891.
Hajibabaei, Mehrdad; Shokralla, Shadi; Zhou, Xin; Singer, Gregory A. C.; Baird, Donald J. (2011). "Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos". PLOS ONE. 6 (4): e17497. Bibcode:2011PLoSO...617497H. doi:10.1371/journal.pone.0017497. PMC 3076369. PMID 21533287.
Xu, Charles C. Y.; Yen, Ivy J.; Bowman, Dean; Turner, Cameron R. (2015). "Spider Web DNA: A New Spin on Noninvasive Genetics of Predator and Prey". PLOS ONE. 10 (11): e0142503. Bibcode:2015PLoSO..1042503X. doi:10.1371/journal.pone.0142503. PMC 4659541. PMID 26606730. S2CID 5331545.
Derocles, Stéphane A. P.; Evans, Darren M.; Nichols, Paul C.; Evans, S. Aifionn; Lunt, David H. (2015). "Determining Plant – Leaf Miner – Parasitoid Interactions: A DNA Barcoding Approach". PLOS ONE. 10 (2): e0117872. Bibcode:2015PLoSO..1017872D. doi:10.1371/journal.pone.0117872. PMC 4339730. PMID 25710377.
Jurado-Rivera, José A.; Vogler, Alfried P.; Reid, Chris A.M; Petitpierre, Eduard; Gómez-Zurita, Jesús (2009). "DNA barcoding insect–host plant associations". Proceedings of the Royal Society B: Biological Sciences. 276 (1657): 639–648. doi:10.1098/rspb.2008.1264. PMC 2660938. PMID 19004756.
Paula, Débora P.; Linard, Benjamin; Crampton-Platt, Alex; Srivathsan, Amrita; Timmermans, Martijn J. T. N.; Sujii, Edison R.; Pires, Carmen S. S.; Souza, Lucas M.; Andow, David A.; Vogler, Alfried P. (2016). "Uncovering Trophic Interactions in Arthropod Predators through DNA Shotgun-Sequencing of Gut Contents". PLOS ONE. 11 (9): e0161841. Bibcode:2016PLoSO..1161841P. doi:10.1371/journal.pone.0161841. PMC 5021305. PMID 27622637.
Bohmann, Kristine; Monadjem, Ara; Lehmkuhl Noer, Christina; Rasmussen, Morten; Zeale, Matt R. K.; Clare, Elizabeth; Jones, Gareth; Willerslev, Eske; Gilbert, M. Thomas P. (2011). "Molecular Diet Analysis of Two African Free-Tailed Bats (Molossidae) Using High Throughput Sequencing". PLOS ONE. 6 (6): e21441. Bibcode:2011PLoSO...621441B. doi:10.1371/journal.pone.0021441. PMC 3120876. PMID 21731749.
Vesterinen, Eero J.; Lilley, Thomas; Laine, Veronika N.; Wahlberg, Niklas (2013). "Next Generation Sequencing of Fecal DNA Reveals the Dietary Diversity of the Widespread Insectivorous Predator Daubenton's Bat (Myotis daubentonii) in Southwestern Finland". PLOS ONE. 8 (11): e82168. Bibcode:2013PLoSO...882168V. doi:10.1371/journal.pone.0082168. PMC 3842304. PMID 24312405.
Bell, Karen L.; Fowler, Julie; Burgess, Kevin S.; Dobbs, Emily K.; Gruenewald, David; Lawley, Brice; Morozumi, Connor; Brosi, Berry J. (2017). "Applying Pollen DNA Metabarcoding to the Study of Plant–Pollinator Interactions". Applications in Plant Sciences. 5 (6). doi:10.3732/apps.1600124. PMC 5499302. PMID 28690929. S2CID 6590244.
Pornon, André; Escaravage, Nathalie; Burrus, Monique; Holota, Hélène; Khimoun, Aurélie; Mariette, Jérome; Pellizzari, Charlène; Iribar, Amaia; Etienne, Roselyne; Taberlet, Pierre; Vidal, Marie; Winterton, Peter; Zinger, Lucie; Andalo, Christophe (2016). "Using metabarcoding to reveal and quantify plant-pollinator interactions". Scientific Reports. 6: 27282. Bibcode:2016NatSR...627282P. doi:10.1038/srep27282. PMC 4891682. PMID 27255732.
Lynggaard, Christina; Bertelsen, Mads Frost; Jensen, Casper V.; Johnson, Matthew S.; Frøslev, Tobias Guldberg; Olsen, Morten Tange; Bohmann, Kristine (6 January 2022). "Airborne environmental DNA for terrestrial vertebrate community monitoring". Current Biology. 32 (3): 701–707.e5. Bibcode:2022CBio...32E.701L. doi:10.1016/j.cub.2021.12.014. PMC 8837273. PMID 34995490. S2CID 245772800.
Clare, Elizabeth L.; Economou, Chloe K.; Faulkes, Chris G.; Gilbert, James D.; Bennett, Frances; Drinkwater, Rosie; Littlefair, Joanne E. (2021). "EDNAir: Proof of concept that animal DNA can be collected from air sampling". PeerJ. 9: e11030. doi:10.7717/peerj.11030. PMC 8019316. PMID 33850648. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Métris, Kimberly L.; Métris, Jérémy (14 April 2023). "Aircraft surveys for air eDNA: probing biodiversity in the sky". PeerJ. 11: e15171. doi:10.7717/peerj.15171. ISSN 2167-8359. PMC 10108859. PMID 37077310.
Pusceddu, A.; Bianchelli, S.; Martin, J.; Puig, P.; Palanques, A.; Masque, P.; Danovaro, R. (2014). "Chronic and intensive bottom trawling impairs deep-sea biodiversity and ecosystem functioning". Proceedings of the National Academy of Sciences. 111 (24): 8861–8866. Bibcode:2014PNAS..111.8861P. doi:10.1073/pnas.1405454111. PMC 4066481. PMID 24843122.
Salter, Ian; Joensen, Mourits; Kristiansen, Regin; Steingrund, Petur; Vestergaard, Poul (2019). "Environmental DNA concentrations are correlated with regional biomass of Atlantic cod in oceanic waters". Communications Biology. 2: 461. doi:10.1038/s42003-019-0696-8. PMC 6904555. PMID 31840106. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Goldberg, Caren S.; Pilliod, David S.; Arkle, Robert S.; Waits, Lisette P. (2011). "Molecular Detection of Vertebrates in Stream Water: A Demonstration Using Rocky Mountain Tailed Frogs and Idaho Giant Salamanders". PLOS ONE. 6 (7): e22746. Bibcode:2011PLoSO...622746G. doi:10.1371/journal.pone.0022746. PMC 3144250. PMID 21818382.
Stoeckle, Mark Y.; Soboleva, Lyubov; Charlop-Powers, Zachary (2017). "Aquatic environmental DNA detects seasonal fish abundance and habitat preference in an urban estuary". PLOS ONE. 12 (4): e0175186. Bibcode:2017PLoSO..1275186S. doi:10.1371/journal.pone.0175186. PMC 5389620. PMID 28403183.
Thomsen, Philip Francis; Kielgast, Jos; Iversen, Lars Lønsmann; Møller, Peter Rask; Rasmussen, Morten; Willerslev, Eske (2012). "Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples". PLOS ONE. 7 (8): e41732. Bibcode:2012PLoSO...741732T. doi:10.1371/journal.pone.0041732. PMC 3430657. PMID 22952584.
Thomsen, Philip Francis; Møller, Peter Rask; Sigsgaard, Eva Egelyng; Knudsen, Steen Wilhelm; Jørgensen, Ole Ankjær; Willerslev, Eske (2016). "Environmental DNA from Seawater Samples Correlate with Trawl Catches of Subarctic, Deepwater Fishes". PLOS ONE. 11 (11): e0165252. Bibcode:2016PLoSO..1165252T. doi:10.1371/journal.pone.0165252. PMC 5112899. PMID 27851757.
Takahara, Teruhiko; Minamoto, Toshifumi; Yamanaka, Hiroki; Doi, Hideyuki; Kawabata, Zen'Ichiro (2012). "Estimation of Fish Biomass Using Environmental DNA". PLOS ONE. 7 (4): e35868. Bibcode:2012PLoSO...735868T. doi:10.1371/journal.pone.0035868. PMC 3338542. PMID 22563411.
Doi, Hideyuki; Uchii, Kimiko; Takahara, Teruhiko; Matsuhashi, Saeko; Yamanaka, Hiroki; Minamoto, Toshifumi (2015). "Use of Droplet Digital PCR for Estimation of Fish Abundance and Biomass in Environmental DNA Surveys". PLOS ONE. 10 (3): e0122763. Bibcode:2015PLoSO..1022763D. doi:10.1371/journal.pone.0122763. PMC 4370432. PMID 25799582.
Maruyama, Atsushi; Nakamura, Keisuke; Yamanaka, Hiroki; Kondoh, Michio; Minamoto, Toshifumi (2014). "The Release Rate of Environmental DNA from Juvenile and Adult Fish". PLOS ONE. 9 (12): e114639. Bibcode:2014PLoSO...9k4639M. doi:10.1371/journal.pone.0114639. PMC 4257714. PMID 25479160.
Salter, Ian (2018). "Seasonal variability in the persistence of dissolved environmental DNA (EDNA) in a marine system: The role of microbial nutrient limitation". PLOS ONE. 13 (2): e0192409. Bibcode:2018PLoSO..1392409S. doi:10.1371/journal.pone.0192409. PMC 5825020. PMID 29474423.
Buxton, Andrew S.; Groombridge, Jim J.; Griffiths, Richard A. (2018). "Seasonal variation in environmental DNA detection in sediment and water samples". PLOS ONE. 13 (1): e0191737. Bibcode:2018PLoSO..1391737B. doi:10.1371/journal.pone.0191737. PMC 5774844. PMID 29352294.
Collins, Rupert A.; Wangensteen, Owen S.; o'Gorman, Eoin J.; Mariani, Stefano; Sims, David W.; Genner, Martin J. (2018). "Persistence of environmental DNA in marine systems". Communications Biology. 1: 185. doi:10.1038/s42003-018-0192-6. PMC 6218555. PMID 30417122.
Eichmiller, Jessica J.; Bajer, Przemyslaw G.; Sorensen, Peter W. (2014). "The Relationship between the Distribution of Common Carp and Their Environmental DNA in a Small Lake". PLOS ONE. 9 (11): e112611. Bibcode:2014PLoSO...9k2611E. doi:10.1371/journal.pone.0112611. PMC 4226586. PMID 25383965.
Yamamoto, Satoshi; Minami, Kenji; Fukaya, Keiichi; Takahashi, Kohji; Sawada, Hideki; Murakami, Hiroaki; Tsuji, Satsuki; Hashizume, Hiroki; Kubonaga, Shou; Horiuchi, Tomoya; Hongo, Masamichi; Nishida, Jo; Okugawa, Yuta; Fujiwara, Ayaka; Fukuda, Miho; Hidaka, Shunsuke; Suzuki, Keita W.; Miya, Masaki; Araki, Hitoshi; Yamanaka, Hiroki; Maruyama, Atsushi; Miyashita, Kazushi; Masuda, Reiji; Minamoto, Toshifumi; Kondoh, Michio (2016). "Environmental DNA as a 'Snapshot' of Fish Distribution: A Case Study of Japanese Jack Mackerel in Maizuru Bay, Sea of Japan". PLOS ONE. 11 (3): e0149786. Bibcode:2016PLoSO..1149786Y. doi:10.1371/journal.pone.0149786. PMC 4775019. PMID 26933889. S2CID 5168061.
Corinaldesi, C.; Tangherlini, M.; Manea, E.; Dell'Anno, A. (2018). "Extracellular DNA as a genetic recorder of microbial diversity in benthic deep-sea ecosystems". Scientific Reports. 8 (1): 1839. Bibcode:2018NatSR...8.1839C. doi:10.1038/s41598-018-20302-7. PMC 5789842. PMID 29382896. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Dell'Anno, Antonio; Corinaldesi, Cinzia; Danovaro, Roberto (2015). "Virus decomposition provides an important contribution to benthic deep-sea ecosystem functioning". Proceedings of the National Academy of Sciences. 112 (16): E2014–E2019. Bibcode:2015PNAS..112E2014D. doi:10.1073/pnas.1422234112. PMC 4413343. PMID 25848024.
Coolen, Marco J. L.; Overmann, Jörg (1998). "Analysis of Subfossil Molecular Remains of Purple Sulfur Bacteria in a Lake Sediment". Applied and Environmental Microbiology. 64 (11): 4513–4521. Bibcode:1998ApEnM..64.4513C. doi:10.1128/AEM.64.11.4513-4521.1998. PMC 106678. PMID 9797316.
Coolen, M. J. L.; Orsi, W. D.; Balkema, C.; Quince, C.; Harris, K.; Sylva, S. P.; Filipova-Marinova, M.; Giosan, L. (2013). "Evolution of the plankton paleome in the Black Sea from the Deglacial to Anthropocene". Proceedings of the National Academy of Sciences. 110 (21): 8609–8614. Bibcode:2013PNAS..110.8609C. doi:10.1073/pnas.1219283110. PMC 3666672. PMID 23650351.
Corinaldesi, C.; Tangherlini, M.; Luna, G. M.; Dell'Anno, A. (2014). "Extracellular DNA can preserve the genetic signatures of present and past viral infection events in deep hypersaline anoxic basins". Proceedings of the Royal Society B: Biological Sciences. 281 (1780). doi:10.1098/rspb.2013.3299. PMC 4027399. PMID 24523277. S2CID 1214760.
Dell'Anno, Antonio; Corinaldesi, Cinzia; Stavrakakis, Spyros; Lykousis, Vasilis; Danovaro, Roberto (2005). "Pelagic-Benthic Coupling and Diagenesis of Nucleic Acids in a Deep-Sea Continental Margin and an Open-Slope System of the Eastern Mediterranean". Applied and Environmental Microbiology. 71 (10): 6070–6076. Bibcode:2005ApEnM..71.6070D. doi:10.1128/AEM.71.10.6070-6076.2005. PMC 1265925. PMID 16204523.
Orcutt, B. N.; Sylvan, J. B.; Knab, N. J.; Edwards, K. J. (2011). "Microbial Ecology of the Dark Ocean above, at, and below the Seafloor". Microbiology and Molecular Biology Reviews. 75 (2): 361–422. doi:10.1128/MMBR.00039-10. PMC 3122624. PMID 21646433.
Zinger, Lucie; Amaral-Zettler, Linda A.; Fuhrman, Jed A.; Horner-Devine, M. Claire; Huse, Susan M.; Welch, David B. Mark; Martiny, Jennifer B. H.; Sogin, Mitchell; Boetius, Antje; Ramette, Alban (2011). "Global Patterns of Bacterial Beta-Diversity in Seafloor and Seawater Ecosystems". PLOS ONE. 6 (9): e24570. Bibcode:2011PLoSO...624570Z. doi:10.1371/journal.pone.0024570. PMC 3169623. PMID 21931760.
Bienhold, Christina; Boetius, Antje; Ramette, Alban (2012). "The energy–diversity relationship of complex bacterial communities in Arctic deep-sea sediments". The ISME Journal. 6 (4): 724–732. Bibcode:2012ISMEJ...6..724B. doi:10.1038/ismej.2011.140. PMC 3309351. PMID 22071347.
Zinger, L.; Boetius, A.; Ramette, A. (2014). "Bacterial taxa–area and distance–decay relationships in marine environments". Molecular Ecology. 23 (4): 954–964. Bibcode:2014MolEc..23..954Z. doi:10.1111/mec.12640. PMC 4230465. PMID 24460915.
Drummond, Alexei J.; Newcomb, Richard D.; Buckley, Thomas R.; Xie, Dong; Dopheide, Andrew; Potter, Benjamin CM; Heled, Joseph; Ross, Howard A.; Tooman, Leah; Grosser, Stefanie; Park, Duckchul; Demetras, Nicholas J.; Stevens, Mark I.; Russell, James C.; Anderson, Sandra H.; Carter, Anna; Nelson, Nicola (2015). "Evaluating a multigene environmental DNA approach for biodiversity assessment". GigaScience. 4: 46. doi:10.1186/s13742-015-0086-1. PMC 4595072. PMID 26445670. S2CID 28846124.
Pedersen, Mikkel Winther; Overballe-Petersen, Søren; Ermini, Luca; Sarkissian, Clio Der; Haile, James; Hellstrom, Micaela; Spens, Johan; Thomsen, Philip Francis; Bohmann, Kristine; Cappellini, Enrico; Schnell, Ida Bærholm; Wales, Nathan A.; Carøe, Christian; Campos, Paula F.; Schmidt, Astrid M. Z.; Gilbert, M. Thomas P.; Hansen, Anders J.; Orlando, Ludovic; Willerslev, Eske (2015). "Ancient and modern environmental DNA". Philosophical Transactions of the Royal Society B: Biological Sciences. 370 (1660). doi:10.1098/rstb.2013.0383. PMC 4275890. PMID 25487334.
De Schepper, Stijn; Ray, Jessica L.; Skaar, Katrine Sandnes; Sadatzki, Henrik; Ijaz, Umer Z.; Stein, Ruediger; Larsen, Aud (2019). "The potential of sedimentary ancient DNA for reconstructing past sea ice evolution". The ISME Journal. 13 (10): 2566–2577. Bibcode:2019ISMEJ..13.2566D. doi:10.1038/s41396-019-0457-1. PMC 6776040. PMID 31235841.
Barrenechea Angeles, Inès; Lejzerowicz, Franck; Cordier, Tristan; Scheplitz, Janin; Kucera, Michal; Ariztegui, Daniel; Pawlowski, Jan; Morard, Raphaël (2020). "Planktonic foraminifera eDNA signature deposited on the seafloor remains preserved after burial in marine sediments". Scientific Reports. 10 (1): 20351. doi:10.1038/s41598-020-77179-8. PMC 7684305. PMID 33230106. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Guillou, Laure; et al. (2012). "The Protist Ribosomal Reference database (PR2): A catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy". Nucleic Acids Research. 41 (Database issue): D597–D604. doi:10.1093/nar/gks1160. PMC 3531120. PMID 23193267.
Morard, Raphaël; Vollmar, Nele M.; Greco, Mattia; Kucera, Michal (2019). "Unassigned diversity of planktonic foraminifera from environmental sequencing revealed as known but neglected species". PLOS ONE. 14 (3): e0213936. Bibcode:2019PLoSO..1413936M. doi:10.1371/journal.pone.0213936. PMC 6428320. PMID 30897140.
Siccha, Michael; Kucera, Michal (2017). "ForCenS, a curated database of planktonic foraminifera census counts in marine surface sediment samples". Scientific Data. 4: 170109. Bibcode:2017NatSD...470109S. doi:10.1038/sdata.2017.109. PMC 5566098. PMID 28829434.
Lejzerowicz, Franck; Esling, Philippe; Majewski, Wojciech; Szczuciński, Witold; Decelle, Johan; Obadia, Cyril; Arbizu, Pedro Martinez; Pawlowski, Jan (2013). "Ancient DNA complements microfossil record in deep-sea subsurface sediments". Biology Letters. 9 (4). doi:10.1098/rsbl.2013.0283. PMC 3730641. PMID 23658006.

nytimes.com

Zimmer, Carl (7 December 2022). "Oldest Known DNA Offers Glimpse of a Once-Lush Arctic - In Greenland's permafrost, scientists discovered two-million-year-old genetic material from scores of plant and animal species, including mastodons, geese, lemmings and ants". The New York Times. Retrieved 7 December 2022.

precisionbiomonitoring.com

"The TripleLock™ Platform - Precision Biomonitoriong". Environmental DNA Services. Retrieved 12 February 2019.

qmul.ac.uk

qmro.qmul.ac.uk

Hering, Daniel; Borja, Angel; Jones, J.Iwan; Pont, Didier; Boets, Pieter; Bouchez, Agnes; Bruce, Kat; Drakare, Stina; Hänfling, Bernd; Kahlert, Maria; Leese, Florian; Meissner, Kristian; Mergen, Patricia; Reyjol, Yorick; Segurado, Pedro; Vogler, Alfried; Kelly, Martyn (2018). "Implementation options for DNA-based identification into ecological status assessment under the European Water Framework Directive". Water Research. 138: 192–205. Bibcode:2018WatRe.138..192H. doi:10.1016/j.watres.2018.03.003. PMID 29602086. S2CID 5008250.

semanticscholar.org

api.semanticscholar.org

Thomsen, Philip Francis; Sigsgaard, Eva E. (2019). "Environmental DNA metabarcoding of wild flowers reveals diverse communities of terrestrial arthropods". Ecology and Evolution. 9 (4): 1665–1679. Bibcode:2019EcoEv...9.1665T. doi:10.1002/ece3.4809. PMC 6392377. PMID 30847063. S2CID 71143282. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Stewart, Kathryn A. (1 April 2019). "Understanding the effects of biotic and abiotic factors on sources of aquatic environmental DNA". Biodiversity and Conservation. 28 (5): 983–1001. Bibcode:2019BiCon..28..983S. doi:10.1007/s10531-019-01709-8. hdl:11245.1/1caeb8dd-3d0b-493c-90dd-c180c9c8f21c. ISSN 1572-9710. S2CID 61811470.
Ruppert, Krista M.; Kline, Richard J.; Rahman, Md Saydur (2019). "Past, present, and future perspectives of environmental DNA (EDNA) metabarcoding: A systematic review in methods, monitoring, and applications of global eDNA". Global Ecology and Conservation. 17: e00547. doi:10.1016/j.gecco.2019.e00547. S2CID 133855497. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Qu, Chanjuan; Stewart, Kathryn A. (18 February 2019). "Evaluating monitoring options for conservation: comparing traditional and environmental DNA tools for a critically endangered mammal". The Science of Nature. 106 (3): 9. Bibcode:2019SciNa.106....9Q. doi:10.1007/s00114-019-1605-1. hdl:11245.1/d02ea724-b763-42b2-8f97-696ef88db996. ISSN 1432-1904. PMID 30778682. S2CID 66881381.
Tsuji, Satsuki (2016). "Effects of water pH and proteinase K treatment on the yield of environmental DNA from water samples". Limnology. 18: 1–7. doi:10.1007/s10201-016-0483-x. ISSN 1439-8621. S2CID 44793881.
Kjær, Kurt H.; et al. (7 December 2022). "A 2-million-year-old ecosystem in Greenland uncovered by environmental DNA". Nature. 612 (7939): 283–291. Bibcode:2022Natur.612..283K. doi:10.1038/s41586-022-05453-y. PMC 9729109. PMID 36477129. S2CID 254367944.
Barnes, Matthew A.; Turner, Cameron R. (2016). "The ecology of environmental DNA and implications for conservation genetics". Conservation Genetics. 17 (1): 1–17. Bibcode:2016ConG...17....1B. doi:10.1007/s10592-015-0775-4. hdl:2346/87600. S2CID 14914544.
Taberlet, Pierre; Coissac, Eric; Pompanon, François; Brochmann, Christian; Willerslev, Eske (2012). "Towards next-generation biodiversity assessment using DNA metabarcoding". Molecular Ecology. 21 (8): 2045–2050. Bibcode:2012MolEc..21.2045T. doi:10.1111/j.1365-294X.2012.05470.x. PMID 22486824. S2CID 41437334.
Stewart, Kathryn; Ma, Hongjuan; Zheng, Jinsong; Zhao, Jianfu (2017). "Using environmental DNA to assess population-wide spatiotemporal reserve use". Conservation Biology (in Spanish). 31 (5): 1173–1182. Bibcode:2017ConBi..31.1173S. doi:10.1111/cobi.12910. ISSN 1523-1739. PMID 28221696. S2CID 3781648.
Goldberg, Caren S.; Turner, Cameron R.; Deiner, Kristy; Klymus, Katy E.; Thomsen, Philip Francis; Murphy, Melanie A.; Spear, Stephen F.; McKee, Anna; Oyler-Mccance, Sara J.; Cornman, Robert Scott; Laramie, Matthew B.; Mahon, Andrew R.; Lance, Richard F.; Pilliod, David S.; Strickler, Katherine M.; Waits, Lisette P.; Fremier, Alexander K.; Takahara, Teruhiko; Herder, Jelger E.; Taberlet, Pierre (2016). "Critical considerations for the application of environmental DNA methods to detect aquatic species". Methods in Ecology and Evolution. 7 (11): 1299–1307. Bibcode:2016MEcEv...7.1299G. doi:10.1111/2041-210X.12595. hdl:20.500.11850/502281. S2CID 89432389.
Hering, Daniel; Borja, Angel; Jones, J.Iwan; Pont, Didier; Boets, Pieter; Bouchez, Agnes; Bruce, Kat; Drakare, Stina; Hänfling, Bernd; Kahlert, Maria; Leese, Florian; Meissner, Kristian; Mergen, Patricia; Reyjol, Yorick; Segurado, Pedro; Vogler, Alfried; Kelly, Martyn (2018). "Implementation options for DNA-based identification into ecological status assessment under the European Water Framework Directive". Water Research. 138: 192–205. Bibcode:2018WatRe.138..192H. doi:10.1016/j.watres.2018.03.003. PMID 29602086. S2CID 5008250.
Deiner, Kristy; Bik, Holly M.; Mächler, Elvira; Seymour, Mathew; Lacoursière-Roussel, Anaïs; Altermatt, Florian; Creer, Simon; Bista, Iliana; Lodge, David M.; Vere, Natasha; Pfrender, Michael E.; Bernatchez, Louis (2017). "Environmental DNA metabarcoding: Transforming how we survey animal and plant communities". Molecular Ecology. 26 (21): 5872–5895. Bibcode:2017MolEc..26.5872D. doi:10.1111/mec.14350. hdl:20.500.11850/455284. PMID 28921802. S2CID 8001074.
Ma, Hongjuan; Stewart, Kathryn; Lougheed, Stephen; Zheng, Jinsong; Wang, Yuxiang; Zhao, Jianfu (1 December 2016). "Characterization, optimization, and validation of environmental DNA (eDNA) markers to detect an endangered aquatic mammal". Conservation Genetics Resources. 8 (4): 561–568. Bibcode:2016ConGR...8..561M. doi:10.1007/s12686-016-0597-9. ISSN 1877-7260. S2CID 1613649.
Coissac, Eric; Riaz, Tiayyba; Puillandre, Nicolas (2012). "Bioinformatic challenges for DNA metabarcoding of plants and animals". Molecular Ecology. 21 (8): 1834–1847. Bibcode:2012MolEc..21.1834C. doi:10.1111/j.1365-294X.2012.05550.x. PMID 22486822. S2CID 24398174.
Creer, Simon; Deiner, Kristy; Frey, Serita; Porazinska, Dorota; Taberlet, Pierre; Thomas, W. Kelley; Potter, Caitlin; Bik, Holly M. (2016). "The ecologist's field guide to sequence-based identification of biodiversity". Methods in Ecology and Evolution. 7 (9): 1008–1018. Bibcode:2016MEcEv...7.1008C. doi:10.1111/2041-210X.12574. hdl:20.500.11850/125378. S2CID 87512991.
Banerjee, Pritam; Stewart, Kathryn A.; Antognazza, Caterina M.; Bunholi, Ingrid V.; Deiner, Kristy; Barnes, Matthew A.; Saha, Santanu; Verdier, Héloïse; Doi, Hideyuki; Maity, Jyoti Prakash; Chan, Michael W.Y.; Chen, Chien Yen (2022). "Plant–animal interactions in the era of environmental DNA (eDNA)—A review". Environmental DNA. 4 (5): 987–999. doi:10.1002/edn3.308. hdl:11383/2137932. S2CID 248977497.
Ficetola, Gentile Francesco; Taberlet, Pierre; Coissac, Eric (2016). "How to limit false positives in environmental DNA and metabarcoding?". Molecular Ecology Resources. 16 (3): 604–607. doi:10.1111/1755-0998.12508. PMID 27062589. S2CID 785279.
Yu, Douglas W.; Ji, Yinqiu; Emerson, Brent C.; Wang, Xiaoyang; Ye, Chengxi; Yang, Chunyan; Ding, Zhaoli (2012). "Biodiversity soup: Metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring". Methods in Ecology and Evolution. 3 (4): 613–623. Bibcode:2012MEcEv...3..613Y. doi:10.1111/j.2041-210X.2012.00198.x. hdl:10261/193380. S2CID 83095866.
Cristescu, Melania E. (2014). "From barcoding single individuals to metabarcoding biological communities: Towards an integrative approach to the study of global biodiversity". Trends in Ecology & Evolution. 29 (10): 566–571. doi:10.1016/j.tree.2014.08.001. PMID 25175416. S2CID 18352572.
Chua, Physilia Y. S.; Bourlat, Sarah J.; Ferguson, Cameron; Korlevic, Petra; Zhao, Leia; Ekrem, Torbjørn; Meier, Rudolf; Lawniczak, Mara K. N. (10 March 2023). "Future of DNA-based insect monitoring". Trends in Genetics. 39 (7): 531–544. doi:10.1016/j.tig.2023.02.012. PMID 36907721. S2CID 257470926.
Vlassov VV, Laktionov PP, Rykova EY (July 2007). "Extracellular nucleic acids". BioEssays. 29 (7): 654–67. doi:10.1002/bies.20604. PMID 17563084. S2CID 32463239.
Nunn, Jack S.; Shafee, Thomas (2022). "Standardised Data on Initiatives – STARDIT: Beta Version". OSF Preprints. 8 (1): 31. doi:10.31219/osf.io/w5xj6. PMC 9294764. PMID 35854364. S2CID 242248848.
Armbrecht, Linda (2020). "The Potential of Sedimentary Ancient DNA to Reconstruct Past Ocean Ecosystems". Oceanography. 33 (2). doi:10.5670/oceanog.2020.211. S2CID 221020884. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Willerslev, Eske; Hansen, Anders J.; Binladen, Jonas; Brand, Tina B.; Gilbert, M. Thomas fP.; Shapiro, Beth; Bunce, Michael; Wiuf, Carsten; Gilichinsky, David A. (2 May 2003). "Diverse Plant and Animal Genetic Records from Holocene and Pleistocene Sediments". Science. 300 (5620): 791–795. Bibcode:2003Sci...300..791W. doi:10.1126/science.1084114. ISSN 0036-8075. PMID 12702808. S2CID 1222227.
Andersen, Kenneth; Bird, Karen Lise; Rasmussen, Morten; Haile, James; Breuning-Madsen, Henrik; Kjaer, Kurt H.; Orlando, Ludovic; Gilbert, M. Thomas P.; Willerslev, Eske (1 April 2012). "Meta-barcoding of 'dirt' DNA from soil reflects vertebrate biodiversity". Molecular Ecology. 21 (8): 1966–1979. Bibcode:2012MolEc..21.1966A. doi:10.1111/j.1365-294X.2011.05261.x. ISSN 1365-294X. PMID 21917035. S2CID 43351435.
Littlefair, Joanne E.; Hrenchuk, Lee E.; Blanchfield, Paul J.; Rennie, Michael D.; Cristescu, Melania E. (26 April 2020). "Thermal stratification and fish thermal preference explain vertical eDNA distributions in lakes". bioRxiv. 30 (13): 3083–3096. doi:10.1101/2020.04.21.042820. PMID 32888228. S2CID 218466213.
Tedersoo, Leho; Bahram, Mohammad; Põlme, Sergei; Kõljalg, Urmas; Yorou, Nourou S.; Wijesundera, Ravi; Ruiz, Luis Villarreal; Vasco-Palacios, Aída M.; Thu, Pham Quang (28 November 2014). "Global diversity and geography of soil fungi" (PDF). Science. 346 (6213): 1256688. doi:10.1126/science.1256688. hdl:10447/102930. ISSN 0036-8075. PMID 25430773. S2CID 206559506.
Williams, Molly-Ann; O'Grady, Joyce; Ball, Bernard; Carlsson, Jens; Eyto, Elvira de; McGinnity, Philip; Jennings, Eleanor; Regan, Fiona; Parle-McDermott, Anne (2019). "The application of CRISPR-Cas for single species identification from environmental DNA". Molecular Ecology Resources. 19 (5): 1106–1114. doi:10.1111/1755-0998.13045. hdl:10468/8053. ISSN 1755-0998. PMID 31177615. S2CID 182949780.
Dirzo, R.; Young, H. S.; Galetti, M.; Ceballos, G.; Isaac, N. J. B.; Collen, B. (2014). "Defaunation in the Anthropocene" (PDF). Science. 345 (6195): 401–406. Bibcode:2014Sci...345..401D. doi:10.1126/science.1251817. PMID 25061202. S2CID 206555761.
Stork, Nigel E. (2018). "How Many Species of Insects and Other Terrestrial Arthropods Are There on Earth?". Annual Review of Entomology. 63: 31–45. doi:10.1146/annurev-ento-020117-043348. PMID 28938083. S2CID 23755007.
Habel, Jan Christian; Dengler, Jürgen; Janišová, Monika; Török, Péter; Wellstein, Camilla; Wiezik, Michal (2013). "European grassland ecosystems: Threatened hotspots of biodiversity". Biodiversity and Conservation. 22 (10): 2131–2138. Bibcode:2013BiCon..22.2131H. doi:10.1007/s10531-013-0537-x. S2CID 15901140.
Biesmeijer, J. C.; Roberts, S. P.; Reemer, M.; Ohlemüller, R.; Edwards, M.; Peeters, T.; Schaffers, A. P.; Potts, S. G.; Kleukers, R.; Thomas, C. D.; Settele, J.; Kunin, W. E. (2006). "Parallel Declines in Pollinators and Insect-Pollinated Plants in Britain and the Netherlands". Science. 313 (5785): 351–354. Bibcode:2006Sci...313..351B. doi:10.1126/science.1127863. PMID 16857940. S2CID 16273738.
Goulson, D.; Nicholls, E.; Botias, C.; Rotheray, E. L. (2015). "Bee declines driven by combined stress from parasites, pesticides, and lack of flowers". Science. 347 (6229). doi:10.1126/science.1255957. PMID 25721506. S2CID 206558985.
Hopkins, G. W.; Freckleton, R. P. (2002). "Declines in the numbers of amateur and professional taxonomists: Implications for conservation". Animal Conservation. 5 (3): 245–249. Bibcode:2002AnCon...5..245H. doi:10.1017/S1367943002002299. S2CID 86182871.
Wheeler, Q. D.; Raven, P. H.; Wilson, E. O. (2004). "Taxonomy: Impediment or Expedient?". Science. 303 (5656): 285. doi:10.1126/science.303.5656.285. hdl:1808/295. PMID 14726557. S2CID 27481787.
Bush, Alex; Sollmann, Rahel; Wilting, Andreas; Bohmann, Kristine; Cole, Beth; Balzter, Heiko; Martius, Christopher; Zlinszky, András; Calvignac-Spencer, Sébastien; Cobbold, Christina A.; Dawson, Terence P.; Emerson, Brent C.; Ferrier, Simon; Gilbert, M. Thomas P.; Herold, Martin; Jones, Laurence; Leendertz, Fabian H.; Matthews, Louise; Millington, James D. A.; Olson, John R.; Ovaskainen, Otso; Raffaelli, Dave; Reeve, Richard; Rödel, Mark-Oliver; Rodgers, Torrey W.; Snape, Stewart; Visseren-Hamakers, Ingrid; Vogler, Alfried P.; White, Piran C. L.; et al. (2017). "Connecting Earth observation to high-throughput biodiversity data" (PDF). Nature Ecology & Evolution. 1 (7): 176. Bibcode:2017NatEE...1..176B. doi:10.1038/s41559-017-0176. PMID 28812589. S2CID 205564094.
Arribas, Paula; Andújar, Carmelo; Hopkins, Kevin; Shepherd, Matthew; Vogler, Alfried P. (2016). "Metabarcoding and mitochondrial metagenomics of endogean arthropods to unveil the mesofauna of the soil". Methods in Ecology and Evolution. 7 (9): 1071–1081. Bibcode:2016MEcEv...7.1071A. doi:10.1111/2041-210X.12557. hdl:10044/1/49935. S2CID 51899316.
Xu, Charles C. Y.; Yen, Ivy J.; Bowman, Dean; Turner, Cameron R. (2015). "Spider Web DNA: A New Spin on Noninvasive Genetics of Predator and Prey". PLOS ONE. 10 (11): e0142503. Bibcode:2015PLoSO..1042503X. doi:10.1371/journal.pone.0142503. PMC 4659541. PMID 26606730. S2CID 5331545.
Blake, Max; McKeown, Niall J.; Bushell, Mark L. T.; Shaw, Paul W. (2016). "DNA extraction from spider webs". Conservation Genetics Resources. 8 (3): 219–221. Bibcode:2016ConGR...8..219B. doi:10.1007/s12686-016-0537-8. hdl:2160/43510. S2CID 15122457.
Gamonal Gomez, Nerea; Sørensen, Didde Hedegaard; Chua, Physilia Ying Shi; Sigsgaard, Lene (6 December 2022). "Assessing flower-visiting arthropod diversity in apple orchards through metabarcoding of environmental <scp>DNA</scp> from flowers and visual census". Environmental DNA. doi:10.1002/edn3.362. ISSN 2637-4943. S2CID 254391183.
Taberlet, Pierre; Coissac, Eric; Hajibabaei, Mehrdad; Rieseberg, Loren H. (2012). "Environmental DNA". Molecular Ecology. 21 (8): 1789–1793. Bibcode:2012MolEc..21.1789T. doi:10.1111/j.1365-294X.2012.05542.x. PMID 22486819. S2CID 3961830.
Zinger, Lucie; Taberlet, Pierre; Schimann, Heidy; Bonin, Aurélie; Boyer, Frédéric; De Barba, Marta; Gaucher, Philippe; Gielly, Ludovic; Giguet-Covex, Charline; Iribar, Amaia; Réjou-Méchain, Maxime; Rayé, Gilles; Rioux, Delphine; Schilling, Vincent; Tymen, Blaise; Viers, Jérôme; Zouiten, Cyril; Thuiller, Wilfried; Coissac, Eric; Chave, Jérôme (2019). "Body size determines soil community assembly in a tropical forest". Molecular Ecology. 28 (3): 528–543. Bibcode:2019MolEc..28..528Z. doi:10.1111/mec.14919. PMID 30375061. S2CID 53114166.
Bell, Karen L.; Fowler, Julie; Burgess, Kevin S.; Dobbs, Emily K.; Gruenewald, David; Lawley, Brice; Morozumi, Connor; Brosi, Berry J. (2017). "Applying Pollen DNA Metabarcoding to the Study of Plant–Pollinator Interactions". Applications in Plant Sciences. 5 (6). doi:10.3732/apps.1600124. PMC 5499302. PMID 28690929. S2CID 6590244.
Franklin, Thomas W.; McKelvey, Kevin S.; Golding, Jessie D.; Mason, Daniel H.; Dysthe, Joseph C.; Pilgrim, Kristine L.; Squires, John R.; Aubry, Keith B.; Long, Robert A.; Greaves, Samuel E.; Raley, Catherine M.; Jackson, Scott; MacKay, Paula; Lisbon, Joshua; Sauder, Joel D.; Pruss, Michael T.; Heffington, Don; Schwartz, Michael K. (2019). "Using environmental DNA methods to improve winter surveys for rare carnivores: DNA from snow and improved noninvasive techniques". Biological Conservation. 229: 50–58. Bibcode:2019BCons.229...50F. doi:10.1016/j.biocon.2018.11.006. S2CID 91312879. Modified text was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
Lynggaard, Christina; Bertelsen, Mads Frost; Jensen, Casper V.; Johnson, Matthew S.; Frøslev, Tobias Guldberg; Olsen, Morten Tange; Bohmann, Kristine (6 January 2022). "Airborne environmental DNA for terrestrial vertebrate community monitoring". Current Biology. 32 (3): 701–707.e5. Bibcode:2022CBio...32E.701L. doi:10.1016/j.cub.2021.12.014. PMC 8837273. PMID 34995490. S2CID 245772800.
Clare, Elizabeth L.; Economou, Chloe K.; Bennett, Frances J.; Dyer, Caitlin E.; Adams, Katherine; McRobie, Benjamin; Drinkwater, Rosie; Littlefair, Joanne E. (January 2022). "Measuring biodiversity from DNA in the air". Current Biology. 32 (3): 693–700.e5. Bibcode:2022CBio...32E.693C. doi:10.1016/j.cub.2021.11.064. PMID 34995488. S2CID 245772825.
Kenneth T. Frank; Brian Petrie; Jae S. Choi; William C. Leggett (2005). "Trophic Cascades in a Formerly Cod-Dominated Ecosystem". Science. 308 (5728): 1621–1623. Bibcode:2005Sci...308.1621F. doi:10.1126/science.1113075. PMID 15947186. S2CID 45088691.
Walters, Carl; Maguire, Jean-Jacques (1996). "Lessons for stock assessment from the northern cod collapse". Reviews in Fish Biology and Fisheries. 6 (2). doi:10.1007/BF00182340. S2CID 20224324.
Arreguin-sanchez, Francisco (1996). "Catchability: A key parameter for fish stock assessment". Reviews in Fish Biology and Fisheries. 6 (2). doi:10.1007/BF00182344. S2CID 9589700.
Valentini, Alice; Taberlet, Pierre; Miaud, Claude; Civade, Raphaël; Herder, Jelger; Thomsen, Philip Francis; Bellemain, Eva; Besnard, Aurélien; Coissac, Eric; Boyer, Frédéric; Gaboriaud, Coline; Jean, Pauline; Poulet, Nicolas; Roset, Nicolas; Copp, Gordon H.; Geniez, Philippe; Pont, Didier; Argillier, Christine; Baudoin, Jean-Marc; Peroux, Tiphaine; Crivelli, Alain J.; Olivier, Anthony; Acqueberge, Manon; Le Brun, Matthieu; Møller, Peter R.; Willerslev, Eske; Dejean, Tony (2016). "Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding" (PDF). Molecular Ecology. 25 (4): 929–942. Bibcode:2016MolEc..25..929V. doi:10.1111/mec.13428. PMID 26479867. S2CID 2801412.
Goodwin, Kelly D.; Thompson, Luke R.; Duarte, Bernardo; Kahlke, Tim; Thompson, Andrew R.; Marques, João C.; Caçador, Isabel (2017). "DNA Sequencing as a Tool to Monitor Marine Ecological Status". Frontiers in Marine Science. 4. doi:10.3389/fmars.2017.00107. hdl:10453/125704. S2CID 27034312.
Sigsgaard, Eva Egelyng; Nielsen, Ida Broman; Carl, Henrik; Krag, Marcus Anders; Knudsen, Steen Wilhelm; Xing, Yingchun; Holm-Hansen, Tore Hejl; Møller, Peter Rask; Thomsen, Philip Francis (2017). "Seawater environmental DNA reflects seasonality of a coastal fish community". Marine Biology. 164 (6): 128. Bibcode:2017MarBi.164..128S. doi:10.1007/s00227-017-3147-4. S2CID 89773962.
Lacoursière-Roussel, Anaïs; Rosabal, Maikel; Bernatchez, Louis (2016). "Estimating fish abundance and biomass from eDNA concentrations: Variability among capture methods and environmental conditions". Molecular Ecology Resources. 16 (6): 1401–1414. doi:10.1111/1755-0998.12522. PMID 26946353. S2CID 4507565.
Li, Jianlong; Lawson Handley, Lori J.; Harper, Lynsey R.; Brys, Rein; Watson, Hayley V.; Di Muri, Cristina; Zhang, Xiang; Hänfling, Bernd (2019). "Limited dispersion and quick degradation of environmental DNA in fish ponds inferred by metabarcoding". Environmental DNA. 1 (3): 238–250. doi:10.1002/edn3.24. S2CID 198403033.
Andruszkiewicz, Elizabeth A.; Koseff, Jeffrey R.; Fringer, Oliver B.; Ouellette, Nicholas T.; Lowe, Anna B.; Edwards, Christopher A.; Boehm, Alexandria B. (2019). "Modeling Environmental DNA Transport in the Coastal Ocean Using Lagrangian Particle Tracking". Frontiers in Marine Science. 6. doi:10.3389/fmars.2019.00477. S2CID 199447701.
Gargan, Laura M.; Morato, Telmo; Pham, Christopher K.; Finarelli, John A.; Carlsson, Jeanette E. L.; Carlsson, Jens (2017). "Development of a sensitive detection method to survey pelagic biodiversity using eDNA and quantitative PCR: A case study of devil ray at seamounts". Marine Biology. 164 (5): 112. Bibcode:2017MarBi.164..112G. doi:10.1007/s00227-017-3141-x. S2CID 91149351.
Yamamoto, Satoshi; Minami, Kenji; Fukaya, Keiichi; Takahashi, Kohji; Sawada, Hideki; Murakami, Hiroaki; Tsuji, Satsuki; Hashizume, Hiroki; Kubonaga, Shou; Horiuchi, Tomoya; Hongo, Masamichi; Nishida, Jo; Okugawa, Yuta; Fujiwara, Ayaka; Fukuda, Miho; Hidaka, Shunsuke; Suzuki, Keita W.; Miya, Masaki; Araki, Hitoshi; Yamanaka, Hiroki; Maruyama, Atsushi; Miyashita, Kazushi; Masuda, Reiji; Minamoto, Toshifumi; Kondoh, Michio (2016). "Environmental DNA as a 'Snapshot' of Fish Distribution: A Case Study of Japanese Jack Mackerel in Maizuru Bay, Sea of Japan". PLOS ONE. 11 (3): e0149786. Bibcode:2016PLoSO..1149786Y. doi:10.1371/journal.pone.0149786. PMC 4775019. PMID 26933889. S2CID 5168061.
Knudsen, Steen Wilhelm; Ebert, Rasmus Bach; Hesselsøe, Martin; Kuntke, Franziska; Hassingboe, Jakob; Mortensen, Peter Bondgaard; Thomsen, Philip Francis; Sigsgaard, Eva Egelyng; Hansen, Brian Klitgaard; Nielsen, Einar Eg; Møller, Peter Rask (2019). "Species-specific detection and quantification of environmental DNA from marine fishes in the Baltic Sea". Journal of Experimental Marine Biology and Ecology. 510: 31–45. doi:10.1016/j.jembe.2018.09.004. S2CID 92601423.
Dell'Anno, A.; Danovaro, R. (2005). "Extracellular DNA Plays a Key Role in Deep-Sea Ecosystem Functioning". Science. 309 (5744): 2179. doi:10.1126/science.1117475. PMID 16195451. S2CID 39216262.
Corinaldesi, Cinzia; Dell'Anno, Antonio; Danovaro, Roberto (2007). "Viral infection plays a key role in extracellular DNA dynamics in marine anoxic systems". Limnology and Oceanography. 52 (2): 508–516. Bibcode:2007LimOc..52..508C. doi:10.4319/lo.2007.52.2.0508. S2CID 85601366.
Corinaldesi, C.; Tangherlini, M.; Luna, G. M.; Dell'Anno, A. (2014). "Extracellular DNA can preserve the genetic signatures of present and past viral infection events in deep hypersaline anoxic basins". Proceedings of the Royal Society B: Biological Sciences. 281 (1780). doi:10.1098/rspb.2013.3299. PMC 4027399. PMID 24523277. S2CID 1214760.
Boere, Arjan C.; Rijpstra, W. Irene C.; De Lange, Gert J.; Malinverno, Elisa; Sinninghe Damsté, Jaap S.; Coolen, Marco J. L. (2011). "Exploring preserved fossil dinoflagellate and haptophyte DNA signatures to infer ecological and environmental changes during deposition of sapropel S1 in the eastern Mediterranean" (PDF). Paleoceanography. 26 (2): n/a. Bibcode:2011PalOc..26.2204B. doi:10.1029/2010PA001948. S2CID 53599204.
Coolen, M. J. L.; Cypionka, H.; Sass, A. M.; Sass, H.; Overmann, J. (2002). "Ongoing Modification of Mediterranean Pleistocene Sapropels Mediated by Prokaryotes". Science. 296 (5577): 2407–2410. Bibcode:2002Sci...296.2407C. doi:10.1126/science.1071893. PMID 12089447. S2CID 33722848.
Levin, Lisa A.; Liu, Kon-Kee; Emeis, Kay-Christian; Breitburg, Denise L.; Cloern, James; Deutsch, Curtis; Giani, Michele; Goffart, Anne; Hofmann, Eileen E.; Lachkar, Zouhair; Limburg, Karin; Liu, Su-Mei; Montes, Enrique; Naqvi, Wajih; Ragueneau, Olivier; Rabouille, Christophe; Sarkar, Santosh Kumar; Swaney, Dennis P.; Wassman, Paul; Wishner, Karen F. (2015). "Comparative biogeochemistry–ecosystem–human interactions on dynamic continental margins". Journal of Marine Systems. 141: 3–17. Bibcode:2015JMS...141....3L. doi:10.1016/j.jmarsys.2014.04.016. S2CID 7139186.
Jørgensen, Bo Barker; Boetius, Antje (2007). "Feast and famine — microbial life in the deep-sea bed". Nature Reviews Microbiology. 5 (10): 770–781. doi:10.1038/nrmicro1745. PMID 17828281. S2CID 22970703.
Corinaldesi, Cinzia (2015). "New perspectives in benthic deep-sea microbial ecology". Frontiers in Marine Science. 2. doi:10.3389/fmars.2015.00017. S2CID 2350681.
Drummond, Alexei J.; Newcomb, Richard D.; Buckley, Thomas R.; Xie, Dong; Dopheide, Andrew; Potter, Benjamin CM; Heled, Joseph; Ross, Howard A.; Tooman, Leah; Grosser, Stefanie; Park, Duckchul; Demetras, Nicholas J.; Stevens, Mark I.; Russell, James C.; Anderson, Sandra H.; Carter, Anna; Nelson, Nicola (2015). "Evaluating a multigene environmental DNA approach for biodiversity assessment". GigaScience. 4: 46. doi:10.1186/s13742-015-0086-1. PMC 4595072. PMID 26445670. S2CID 28846124.
Corinaldesi, C.; Beolchini, F.; Dell'Anno, A. (2008). "Damage and degradation rates of extracellular DNA in marine sediments: Implications for the preservation of gene sequences". Molecular Ecology. 17 (17): 3939–3951. Bibcode:2008MolEc..17.3939C. doi:10.1111/j.1365-294X.2008.03880.x. PMID 18643876. S2CID 22062643.
Armbrecht, Linda H.; Coolen, Marco J.L.; Lejzerowicz, Franck; George, Simon C.; Negandhi, Karita; Suzuki, Yohey; Young, Jennifer; Foster, Nicole R.; Armand, Leanne K.; Cooper, Alan; Ostrowski, Martin; Focardi, Amaranta; Stat, Michael; Moreau, John W.; Weyrich, Laura S. (2019). "Ancient DNA from marine sediments: Precautions and considerations for seafloor coring, sample handling and data generation". Earth-Science Reviews. 196: 102887. Bibcode:2019ESRv..19602887A. doi:10.1016/j.earscirev.2019.102887. hdl:10453/134221. S2CID 198406152.
De Vargas, C.; et al. (2015). "Eukaryotic plankton diversity in the sunlit ocean". Science. 348 (6237). doi:10.1126/science.1261605. hdl:10261/117736. PMID 25999516. S2CID 12853481.
Briggs, Lisa (2020). "Ancient DNA Research in Maritime and Underwater Archaeology: Pitfalls, Promise, and Future Directions". Open Quaternary. 6. doi:10.5334/oq.71. S2CID 213677121.
Morard, Raphaël; Lejzerowicz, Franck; Darling, Kate F.; Lecroq-Bennet, Béatrice; Winther Pedersen, Mikkel; Orlando, Ludovic; Pawlowski, Jan; Mulitza, Stefan; De Vargas, Colomban; Kucera, Michal (2017). "Planktonic foraminifera-derived environmental DNA extracted from abyssal sediments preserves patterns of plankton macroecology". Biogeosciences. 14 (11): 2741–2754. Bibcode:2017BGeo...14.2741M. doi:10.5194/bg-14-2741-2017. hdl:10023/11053. S2CID 55213856.
Corinaldesi, C.; Beolchini, F.; Dell'Anno, A. (2008). "Damage and degradation rates of extracellular DNA in marine sediments: Implications for the preservation of gene sequences". Molecular Ecology. 17 (17): 3939–3951. Bibcode:2008MolEc..17.3939C. doi:10.1111/j.1365-294X.2008.03880.x. PMID 18643876. S2CID 22062643.
Corinaldesi, Cinzia; Dell'Anno, Antonio; Danovaro, Roberto (2007). "Early diagenesis and trophic role of extracellular DNA in different benthic ecosystems". Limnology and Oceanography. 52 (4): 1710–1717. Bibcode:2007LimOc..52.1710C. doi:10.4319/lo.2007.52.4.1710. S2CID 53631156.
Corinaldesi, C.; Barucca, M.; Luna, G. M.; Dell'Anno, A. (2011). "Preservation, origin and genetic imprint of extracellular DNA in permanently anoxic deep-sea sediments". Molecular Ecology. 20 (3): 642–654. Bibcode:2011MolEc..20..642C. doi:10.1111/j.1365-294X.2010.04958.x. PMID 21155913. S2CID 22920579.
Morard, Raphaël; Darling, Kate F.; Mahé, Frédéric; Audic, Stéphane; Ujiié, Yurika; Weiner, Agnes K. M.; André, Aurore; Seears, Heidi A.; Wade, Christopher M.; Quillévéré, Frédéric; Douady, Christophe J.; Escarguel, Gilles; De Garidel-Thoron, Thibault; Siccha, Michael; Kucera, Michal; De Vargas, Colomban (2015). "PFR2: A curated database of planktonic foraminifera 18S ribosomal DNA as a resource for studies of plankton ecology, biogeography and evolution" (PDF). Molecular Ecology Resources. 15 (6): 1472–1485. doi:10.1111/1755-0998.12410. PMID 25828689. S2CID 39066123.
Rutherford, Scott; d'Hondt, Steven; Prell, Warren (1999). "Environmental controls on the geographic distribution of zooplankton diversity". Nature. 400 (6746): 749–753. Bibcode:1999Natur.400..749R. doi:10.1038/23449. S2CID 4418045.
Pawłowska, J.; Lejzerowicz, F.; Esling, P.; Szczuciński, W.; Zajączkowski, M.; Pawlowski, J. (2014). "Ancient DNA sheds new light on the Svalbard foraminiferal fossil record of the last millennium". Geobiology. 12 (4): 277–288. Bibcode:2014Gbio...12..277P. doi:10.1111/gbi.12087. PMID 24730667. S2CID 205140049.
Pawłowska, Joanna; Zajączkowski, Marek; Łącka, Magdalena; Lejzerowicz, Franck; Esling, Philippe; Pawlowski, Jan (2016). "Palaeoceanographic changes in Hornsund Fjord (Spitsbergen, Svalbard) over the last millennium: New insights from ancient DNA". Climate of the Past. 12 (7): 1459–1472. Bibcode:2016CliPa..12.1459P. doi:10.5194/cp-12-1459-2016. S2CID 43985949.

sorbonne-universite.fr

hal.sorbonne-universite.fr

Morard, Raphaël; Darling, Kate F.; Mahé, Frédéric; Audic, Stéphane; Ujiié, Yurika; Weiner, Agnes K. M.; André, Aurore; Seears, Heidi A.; Wade, Christopher M.; Quillévéré, Frédéric; Douady, Christophe J.; Escarguel, Gilles; De Garidel-Thoron, Thibault; Siccha, Michael; Kucera, Michal; De Vargas, Colomban (2015). "PFR2: A curated database of planktonic foraminifera 18S ribosomal DNA as a resource for studies of plankton ecology, biogeography and evolution" (PDF). Molecular Ecology Resources. 15 (6): 1472–1485. doi:10.1111/1755-0998.12410. PMID 25828689. S2CID 39066123.

the-scientist.com

"Researchers Detect Land Animals Using DNA in Nearby Water Bodies".

theconversation.com

"Environmental DNA – how a tool used to detect endangered wildlife ended up helping fight the COVID-19 pandemic". 21 April 2021.

ucl.ac.uk

discovery.ucl.ac.uk

Dirzo, R.; Young, H. S.; Galetti, M.; Ceballos, G.; Isaac, N. J. B.; Collen, B. (2014). "Defaunation in the Anthropocene" (PDF). Science. 345 (6195): 401–406. Bibcode:2014Sci...345..401D. doi:10.1126/science.1251817. PMID 25061202. S2CID 206555761.

univ-toulouse.fr

oatao.univ-toulouse.fr

Valentini, Alice; Taberlet, Pierre; Miaud, Claude; Civade, Raphaël; Herder, Jelger; Thomsen, Philip Francis; Bellemain, Eva; Besnard, Aurélien; Coissac, Eric; Boyer, Frédéric; Gaboriaud, Coline; Jean, Pauline; Poulet, Nicolas; Roset, Nicolas; Copp, Gordon H.; Geniez, Philippe; Pont, Didier; Argillier, Christine; Baudoin, Jean-Marc; Peroux, Tiphaine; Crivelli, Alain J.; Olivier, Anthony; Acqueberge, Manon; Le Brun, Matthieu; Møller, Peter R.; Willerslev, Eske; Dejean, Tony (2016). "Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding" (PDF). Molecular Ecology. 25 (4): 929–942. Bibcode:2016MolEc..25..929V. doi:10.1111/mec.13428. PMID 26479867. S2CID 2801412.

uri.edu

digitalcommons.uri.edu

Levin, Lisa A.; Liu, Kon-Kee; Emeis, Kay-Christian; Breitburg, Denise L.; Cloern, James; Deutsch, Curtis; Giani, Michele; Goffart, Anne; Hofmann, Eileen E.; Lachkar, Zouhair; Limburg, Karin; Liu, Su-Mei; Montes, Enrique; Naqvi, Wajih; Ragueneau, Olivier; Rabouille, Christophe; Sarkar, Santosh Kumar; Swaney, Dennis P.; Wassman, Paul; Wishner, Karen F. (2015). "Comparative biogeochemistry–ecosystem–human interactions on dynamic continental margins". Journal of Marine Systems. 141: 3–17. Bibcode:2015JMS...141....3L. doi:10.1016/j.jmarsys.2014.04.016. S2CID 7139186.

vliz.be

Boere, Arjan C.; Rijpstra, W. Irene C.; De Lange, Gert J.; Malinverno, Elisa; Sinninghe Damsté, Jaap S.; Coolen, Marco J. L. (2011). "Exploring preserved fossil dinoflagellate and haptophyte DNA signatures to infer ecological and environmental changes during deposition of sapropel S1 in the eastern Mediterranean" (PDF). Paleoceanography. 26 (2): n/a. Bibcode:2011PalOc..26.2204B. doi:10.1029/2010PA001948. S2CID 53599204.

web.archive.org

Roth, Annie (19 November 2018). "How DNA from snow helps scientists track elusive animals". National Geographic. Archived from the original on 19 November 2018. Retrieved 26 November 2018.

wildlife.org

"eDNA – Not just for fisheries biologists anymore". wildlife.org. 8 December 2017. Retrieved 26 November 2018.

wiley.com

conbio.onlinelibrary.wiley.com

Stewart, Kathryn; Ma, Hongjuan; Zheng, Jinsong; Zhao, Jianfu (2017). "Using environmental DNA to assess population-wide spatiotemporal reserve use". Conservation Biology (in Spanish). 31 (5): 1173–1182. Bibcode:2017ConBi..31.1173S. doi:10.1111/cobi.12910. ISSN 1523-1739. PMID 28221696. S2CID 3781648.

worldcat.org

search.worldcat.org

Stewart, Kathryn A. (1 April 2019). "Understanding the effects of biotic and abiotic factors on sources of aquatic environmental DNA". Biodiversity and Conservation. 28 (5): 983–1001. Bibcode:2019BiCon..28..983S. doi:10.1007/s10531-019-01709-8. hdl:11245.1/1caeb8dd-3d0b-493c-90dd-c180c9c8f21c. ISSN 1572-9710. S2CID 61811470.
Fahner, Nicole (2016). "Large-Scale Monitoring of Plants through Environmental DNA Metabarcoding of Soil: Recovery, Resolution, and Annotation of Four DNA Markers". PLOS ONE. 11 (6): 1–16. Bibcode:2016PLoSO..1157505F. doi:10.1371/journal.pone.0157505. ISSN 1932-6203. PMC 4911152. PMID 27310720 – via Directory of Open Access Journals.
Bohmann, Kristine; Evans, Alice; Gilbert, M. Thomas P.; Carvalho, Gary R.; Creer, Simon; Knapp, Michael; Yu, Douglas W.; de Bruyn, Mark (1 June 2014). "Environmental DNA for wildlife biology and biodiversity monitoring". Trends in Ecology & Evolution. 29 (6): 358–367. doi:10.1016/j.tree.2014.04.003. ISSN 1872-8383. PMID 24821515.
Qu, Chanjuan; Stewart, Kathryn A. (18 February 2019). "Evaluating monitoring options for conservation: comparing traditional and environmental DNA tools for a critically endangered mammal". The Science of Nature. 106 (3): 9. Bibcode:2019SciNa.106....9Q. doi:10.1007/s00114-019-1605-1. hdl:11245.1/d02ea724-b763-42b2-8f97-696ef88db996. ISSN 1432-1904. PMID 30778682. S2CID 66881381.
Tsuji, Satsuki (2016). "Effects of water pH and proteinase K treatment on the yield of environmental DNA from water samples". Limnology. 18: 1–7. doi:10.1007/s10201-016-0483-x. ISSN 1439-8621. S2CID 44793881.
Stewart, Kathryn; Ma, Hongjuan; Zheng, Jinsong; Zhao, Jianfu (2017). "Using environmental DNA to assess population-wide spatiotemporal reserve use". Conservation Biology (in Spanish). 31 (5): 1173–1182. Bibcode:2017ConBi..31.1173S. doi:10.1111/cobi.12910. ISSN 1523-1739. PMID 28221696. S2CID 3781648.
Ma, Hongjuan; Stewart, Kathryn; Lougheed, Stephen; Zheng, Jinsong; Wang, Yuxiang; Zhao, Jianfu (1 December 2016). "Characterization, optimization, and validation of environmental DNA (eDNA) markers to detect an endangered aquatic mammal". Conservation Genetics Resources. 8 (4): 561–568. Bibcode:2016ConGR...8..561M. doi:10.1007/s12686-016-0597-9. ISSN 1877-7260. S2CID 1613649.
Qu, Chanjuan; Stewart, Kathryn A.; Clemente-Carvalho, Rute; Zheng, Jinsong; Wang, Yuxiang; Gong, Cheng; Ma, Limin; Zhao, Jianfu; Lougheed, Stephen C. (7 October 2020). "Comparing fish prey diversity for a critically endangered aquatic mammal in a reserve and the wild using eDNA metabarcoding". Scientific Reports. 10 (1): 16715. doi:10.1038/s41598-020-73648-2. ISSN 2045-2322. PMC 7542144. PMID 33028872.
Willerslev, Eske; Hansen, Anders J.; Binladen, Jonas; Brand, Tina B.; Gilbert, M. Thomas fP.; Shapiro, Beth; Bunce, Michael; Wiuf, Carsten; Gilichinsky, David A. (2 May 2003). "Diverse Plant and Animal Genetic Records from Holocene and Pleistocene Sediments". Science. 300 (5620): 791–795. Bibcode:2003Sci...300..791W. doi:10.1126/science.1084114. ISSN 0036-8075. PMID 12702808. S2CID 1222227.
Andersen, Kenneth; Bird, Karen Lise; Rasmussen, Morten; Haile, James; Breuning-Madsen, Henrik; Kjaer, Kurt H.; Orlando, Ludovic; Gilbert, M. Thomas P.; Willerslev, Eske (1 April 2012). "Meta-barcoding of 'dirt' DNA from soil reflects vertebrate biodiversity". Molecular Ecology. 21 (8): 1966–1979. Bibcode:2012MolEc..21.1966A. doi:10.1111/j.1365-294X.2011.05261.x. ISSN 1365-294X. PMID 21917035. S2CID 43351435.
Turner, Cameron R. (2014). "Fish environmental DNA is more concentrated in aquatic sediments than surface water". Biological Conservation. 183: 93–102. doi:10.1016/j.biocon.2014.11.017. ISSN 0006-3207.
Schultz, Martin (2015). "Modeling the Sensitivity of Field Surveys for Detection of Environmental DNA (eDNA)". PLOS ONE. 10 (10): 1–16. Bibcode:2015PLoSO..1041503S. doi:10.1371/journal.pone.0141503. ISSN 1932-6203. PMC 4624909. PMID 26509674.
Souza, Lesley (2016). "Environmental DNA (eDNA) Detection Probability Is Influenced by Seasonal Activity of Organisms". PLOS ONE. 11 (10): 1–15. Bibcode:2016PLoSO..1165273D. doi:10.1371/journal.pone.0165273. ISSN 1932-6203. PMC 5077074. PMID 27776150.
Saeko, Matsuhashi (2016). "Evaluation of the Environmental DNA Method for Estimating Distribution and Biomass of Submerged Aquatic Plants". PLOS ONE. 11 (6): 1–14. Bibcode:2016PLoSO..1156217M. doi:10.1371/journal.pone.0156217. ISSN 1932-6203. PMC 4909283. PMID 27304876.
Tedersoo, Leho; Bahram, Mohammad; Põlme, Sergei; Kõljalg, Urmas; Yorou, Nourou S.; Wijesundera, Ravi; Ruiz, Luis Villarreal; Vasco-Palacios, Aída M.; Thu, Pham Quang (28 November 2014). "Global diversity and geography of soil fungi" (PDF). Science. 346 (6213): 1256688. doi:10.1126/science.1256688. hdl:10447/102930. ISSN 0036-8075. PMID 25430773. S2CID 206559506.
Detheridge, Andrew Paul; Comont, David; Callaghan, Tony Martin; Bussell, Jennifer; Brand, Graham; Gwynn-Jones, Dylan; Scullion, John; Griffith, Gareth Wyn (June 2018). "Vegetation and edaphic factors influence rapid establishment of distinct fungal communities on former coal-spoil sites". Fungal Ecology. 33: 92–103. doi:10.1016/j.funeco.2018.02.002. ISSN 1754-5048.
Jones, Rhys Aled; Brophy, Peter M.; Davis, Chelsea N.; Davies, Teri E.; Emberson, Holly; Rees Stevens, Pauline; Williams, Hefin Wyn (8 June 2018). "Detection of Galba truncatula, Fasciola hepatica and Calicophoron daubneyi environmental DNA within water sources on pasture land, a future tool for fluke control?". Parasites & Vectors. 11 (1): 342. doi:10.1186/s13071-018-2928-z. ISSN 1756-3305. PMC 5994096. PMID 29884202.
Bergman, Paul S.; Schumer, Gregg; Blankenship, Scott; Campbell, Elizabeth (2016). "Detection of Adult Green Sturgeon Using Environmental DNA Analysis". PLOS ONE. 11 (4): 1–8. Bibcode:2016PLoSO..1153500B. doi:10.1371/journal.pone.0153500. ISSN 1932-6203. PMC 4838217. PMID 27096433.
Wang, Xinkun (2016). Next-generation Sequencing Data Analysis. Boca Raton: CRC Press. ISBN 9781482217889. OCLC 940961529.
Seymour, Mathew; Durance, Isabelle; Cosby, Bernard J.; Ransom-Jones, Emma; Deiner, Kristy; Ormerod, Steve J.; Colbourne, John K.; Wilgar, Gregory; Carvalho, Gary R. (22 January 2018). "Acidity promotes degradation of multi-species environmental DNA in lotic mesocosms". Communications Biology. 1 (1): 4. doi:10.1038/s42003-017-0005-3. ISSN 2399-3642. PMC 6123786. PMID 30271891.
Collins, Rupert A.; Wangensteen, Owen S.; O’Gorman, Eoin J.; Mariani, Stefano; Sims, David W.; Genner, Martin J. (5 November 2018). "Persistence of environmental DNA in marine systems". Communications Biology. 1 (1): 185. doi:10.1038/s42003-018-0192-6. ISSN 2399-3642. PMC 6218555. PMID 30417122.
Hunter, Margaret E.; Dorazio, Robert M.; Butterfield, John S. S.; Meigs-Friend, Gaia; Nico, Leo G.; Ferrante, Jason A. (20 November 2016). "Detection limits of quantitative and digital PCR assays and their influence in presence-absence surveys of environmental DNA". Molecular Ecology Resources. 17 (2): 221–229. doi:10.1111/1755-0998.12619. ISSN 1755-098X. PMID 27768244.
Williams, Molly-Ann; O'Grady, Joyce; Ball, Bernard; Carlsson, Jens; Eyto, Elvira de; McGinnity, Philip; Jennings, Eleanor; Regan, Fiona; Parle-McDermott, Anne (2019). "The application of CRISPR-Cas for single species identification from environmental DNA". Molecular Ecology Resources. 19 (5): 1106–1114. doi:10.1111/1755-0998.13045. hdl:10468/8053. ISSN 1755-0998. PMID 31177615. S2CID 182949780.
Gamonal Gomez, Nerea; Sørensen, Didde Hedegaard; Chua, Physilia Ying Shi; Sigsgaard, Lene (6 December 2022). "Assessing flower-visiting arthropod diversity in apple orchards through metabarcoding of environmental <scp>DNA</scp> from flowers and visual census". Environmental DNA. doi:10.1002/edn3.362. ISSN 2637-4943. S2CID 254391183.
Métris, Kimberly L.; Métris, Jérémy (14 April 2023). "Aircraft surveys for air eDNA: probing biodiversity in the sky". PeerJ. 11: e15171. doi:10.7717/peerj.15171. ISSN 2167-8359. PMC 10108859. PMID 37077310.

worldwildlife.org

"WWF's Arnaud Lyet on measuring wildlife populations". World Wildlife Fund. Retrieved 26 November 2018.

zenodo.org

Gargan, Laura M.; Morato, Telmo; Pham, Christopher K.; Finarelli, John A.; Carlsson, Jeanette E. L.; Carlsson, Jens (2017). "Development of a sensitive detection method to survey pelagic biodiversity using eDNA and quantitative PCR: A case study of devil ray at seamounts". Marine Biology. 164 (5): 112. Bibcode:2017MarBi.164..112G. doi:10.1007/s00227-017-3141-x. S2CID 91149351.