Enzyme promiscuity (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Enzyme promiscuity" in English language version.

refsWebsite

Global rank English rank

43nih.gov

4^th place

33doi.org

2^nd place

11harvard.edu

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8semanticscholar.org

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2handle.net

102^nd place

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1uoregon.edu

3,144^th place

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1web.archive.org

1^st place

1psu.edu

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1arxiv.org

69^th place

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1facebook.com

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1oed.com

360^th place

231^st place

arxiv.org

Ma W, Tang C, Lai L (August 2005). "Specificity of trypsin and chymotrypsin: loop-motion-controlled dynamic correlation as a determinant". Biophysical Journal. 89 (2): 1183–93. arXiv:q-bio/0505037. Bibcode:2005BpJ....89.1183M. doi:10.1529/biophysj.104.057158. PMC 1366603. PMID 15923233.

doi.org

Khersonsky O, Tawfik DS (2010). "Enzyme promiscuity: a mechanistic and evolutionary perspective". Annual Review of Biochemistry. 79: 471–505. doi:10.1146/annurev-biochem-030409-143718. PMID 20235827.
Scott C, Jackson CJ, Coppin CW, Mourant RG, Hilton ME, Sutherland TD, Russell RJ, Oakeshott JG (April 2009). "Catalytic improvement and evolution of atrazine chlorohydrolase". Applied and Environmental Microbiology. 75 (7): 2184–91. Bibcode:2009ApEnM..75.2184S. doi:10.1128/AEM.02634-08. PMC 2663207. PMID 19201959.
Voordeckers K, Brown CA, Vanneste K, van der Zande E, Voet A, Maere S, Verstrepen KJ (2012). Thornton JW (ed.). "Reconstruction of ancestral metabolic enzymes reveals molecular mechanisms underlying evolutionary innovation through gene duplication". PLOS Biology. 10 (12): e1001446. doi:10.1371/journal.pbio.1001446. PMC 3519909. PMID 23239941.
Patrick WM, Quandt EM, Swartzlander DB, Matsumura I (December 2007). "Multicopy suppression underpins metabolic evolvability". Molecular Biology and Evolution. 24 (12): 2716–22. doi:10.1093/molbev/msm204. PMC 2678898. PMID 17884825.
Aharoni A, Gaidukov L, Khersonsky O, McQ Gould S, Roodveldt C, Tawfik DS (January 2005). "The 'evolvability' of promiscuous protein functions". Nature Genetics. 37 (1): 73–6. doi:10.1038/ng1482. PMID 15568024. S2CID 8245673.
Tokuriki N, Jackson CJ, Afriat-Jurnou L, Wyganowski KT, Tang R, Tawfik DS (2012). "Diminishing returns and tradeoffs constrain the laboratory optimization of an enzyme". Nature Communications. 3: 1257. Bibcode:2012NatCo...3.1257T. doi:10.1038/ncomms2246. hdl:1885/69835. PMID 23212386.
Williams PD, Pollock DD, Blackburne BP, Goldstein RA (June 2006). "Assessing the accuracy of ancestral protein reconstruction methods". PLOS Computational Biology. 2 (6): e69. Bibcode:2006PLSCB...2...69W. doi:10.1371/journal.pcbi.0020069. PMC 1480538. PMID 16789817.
Stemmer WP, Crameri A, Ha KD, Brennan TM, Heyneker HL (October 1995). "Single-step assembly of a gene and entire plasmid from large numbers of oligodeoxyribonucleotides". Gene. 164 (1): 49–53. doi:10.1016/0378-1119(95)00511-4. PMID 7590320.
Wouters MA, Liu K, Riek P, Husain A (August 2003). "A despecialization step underlying evolution of a family of serine proteases". Molecular Cell. 12 (2): 343–54. doi:10.1016/s1097-2765(03)00308-3. hdl:10536/DRO/DU:30038994. PMID 14536074.
Thornton JW (May 2004). "Resurrecting ancient genes: experimental analysis of extinct molecules" (PDF). Nature Reviews Genetics. 5 (5): 366–75. doi:10.1038/nrg1324. PMID 15143319. S2CID 205482979. Archived (PDF) from the original on 2012-03-27.
Thornton JW, Need E, Crews D (September 2003). "Resurrecting the ancestral steroid receptor: ancient origin of estrogen signaling". Science. 301 (5640): 1714–7. Bibcode:2003Sci...301.1714T. doi:10.1126/science.1086185. PMID 14500980. S2CID 37628350.
Jensen RA (1976). "Enzyme recruitment in evolution of new function". Annual Review of Microbiology. 30: 409–25. doi:10.1146/annurev.mi.30.100176.002205. PMID 791073.
Fondi M, Brilli M, Emiliani G, Paffetti D, Fani R (2007). "The primordial metabolism: an ancestral interconnection between leucine, arginine, and lysine biosynthesis". BMC Evolutionary Biology. 7 (Suppl 2): S3. Bibcode:2007BMCEE...7S...3F. doi:10.1186/1471-2148-7-S2-S3. PMC 1963480. PMID 17767731.
Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006). "Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection". Molecular Systems Biology. 2: 2006.0008. doi:10.1038/msb4100050. PMC 1681482. PMID 16738554.
Kitagawa M, Ara T, Arifuzzaman M, Ioka-Nakamichi T, Inamoto E, Toyonaga H, Mori H (2006). "Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research". DNA Research. 12 (5): 291–9. doi:10.1093/dnares/dsi012. PMID 16769691.
Soo VW, Hanson-Manful P, Patrick WM (January 2011). "Artificial gene amplification reveals an abundance of promiscuous resistance determinants in Escherichia coli". Proceedings of the National Academy of Sciences of the United States of America. 108 (4): 1484–9. Bibcode:2011PNAS..108.1484S. doi:10.1073/pnas.1012108108. PMC 3029738. PMID 21173244.
O'Brien PJ, Herschlag D (May 2001). "Functional interrelationships in the alkaline phosphatase superfamily: phosphodiesterase activity of Escherichia coli alkaline phosphatase". Biochemistry. 40 (19): 5691–9. CiteSeerX 10.1.1.322.8876. doi:10.1021/bi0028892. PMID 11341834.
Zhao C, Kumada Y, Imanaka H, Imamura K, Nakanishi K (June 2006). "Cloning, overexpression, purification, and characterization of O-acetylserine sulfhydrylase-B from Escherichia coli". Protein Expression and Purification. 47 (2): 607–13. doi:10.1016/j.pep.2006.01.002. PMID 16546401.
Tokuriki N, Tawfik DS (October 2009). "Stability effects of mutations and protein evolvability". Current Opinion in Structural Biology. 19 (5): 596–604. doi:10.1016/j.sbi.2009.08.003. PMID 19765975.
Daumann LJ, McCarthy BY, Hadler KS, Murray TP, Gahan LR, Larrabee JA, Ollis DL, Schenk G (January 2013). "Promiscuity comes at a price: catalytic versatility vs efficiency in different metal ion derivatives of the potential bioremediator GpdQ". Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics. 1834 (1): 425–32. doi:10.1016/j.bbapap.2012.02.004. PMID 22366468.
Schmidt DM, Mundorff EC, Dojka M, Bermudez E, Ness JE, Govindarajan S, Babbitt PC, Minshull J, Gerlt JA (July 2003). "Evolutionary potential of (beta/alpha)8-barrels: functional promiscuity produced by single substitutions in the enolase superfamily". Biochemistry. 42 (28): 8387–93. doi:10.1021/bi034769a. PMID 12859183.
Yoshikuni Y, Ferrin TE, Keasling JD (April 2006). "Designed divergent evolution of enzyme function". Nature. 440 (7087): 1078–82. Bibcode:2006Natur.440.1078Y. doi:10.1038/nature04607. PMID 16495946. S2CID 4394693.
Ma W, Tang C, Lai L (August 2005). "Specificity of trypsin and chymotrypsin: loop-motion-controlled dynamic correlation as a determinant". Biophysical Journal. 89 (2): 1183–93. arXiv:q-bio/0505037. Bibcode:2005BpJ....89.1183M. doi:10.1529/biophysj.104.057158. PMC 1366603. PMID 15923233.
Yasutake Y, Yao M, Sakai N, Kirita T, Tanaka I (November 2004). "Crystal structure of the Pyrococcus horikoshii isopropylmalate isomerase small subunit provides insight into the dual substrate specificity of the enzyme". Journal of Molecular Biology. 344 (2): 325–33. doi:10.1016/j.jmb.2004.09.035. PMID 15522288.
Perona JJ, Hadd A (November 2012). "Structural diversity and protein engineering of the aminoacyl-tRNA synthetases". Biochemistry. 51 (44): 8705–29. doi:10.1021/bi301180x. PMID 23075299.
Villiers BR, Hollfelder F (March 2009). "Mapping the limits of substrate specificity of the adenylation domain of TycA". ChemBioChem. 10 (4): 671–82. doi:10.1002/cbic.200800553. PMID 19189362. S2CID 21536526.
Vasu K, Nagamalleswari E, Nagaraja V (May 2012). "Promiscuous restriction is a cellular defense strategy that confers fitness advantage to bacteria". Proceedings of the National Academy of Sciences of the United States of America. 109 (20): E1287–93. Bibcode:2012PNAS..109E1287V. doi:10.1073/pnas.1119226109. PMC 3356625. PMID 22509013.
Weng JK, Philippe RN, Noel JP (June 2012). "The rise of chemodiversity in plants". Science. 336 (6089): 1667–70. Bibcode:2012Sci...336.1667W. doi:10.1126/science.1217411. PMID 22745420. S2CID 206539148.
Bornscheuer UT, Huisman GW, Kazlauskas RJ, Lutz S, Moore JC, Robins K (May 2012). "Engineering the third wave of biocatalysis". Nature. 485 (7397): 185–94. Bibcode:2012Natur.485..185B. doi:10.1038/nature11117. PMID 22575958. S2CID 4379415.
Shin JS, Kim BG (August 2001). "Comparison of the omega-transaminases from different microorganisms and application to production of chiral amines". Bioscience, Biotechnology, and Biochemistry. 65 (8): 1782–8. doi:10.1271/bbb.65.1782. PMID 11577718.
Maier TH (April 2003). "Semisynthetic production of unnatural L-alpha-amino acids by metabolic engineering of the cysteine-biosynthetic pathway". Nature Biotechnology. 21 (4): 422–7. doi:10.1038/nbt807. PMID 12640465. S2CID 22280900.
Rahman SA, Cuesta SM, Furnham N, Holliday GL, Thornton JM (February 2014). "EC-BLAST: a tool to automatically search and compare enzyme reactions". Nature Methods. 11 (2): 171–4. doi:10.1038/nmeth.2803. PMC 4122987. PMID 24412978.
Jakoby WB, Ziegler DM (December 1990). "The enzymes of detoxication". The Journal of Biological Chemistry. 265 (34): 20715–8. doi:10.1016/S0021-9258(17)45272-0. PMID 2249981.

facebook.com

"Codexis® Enzyme Platforms". www.facebook.com. 2021-03-14. Retrieved 2024-06-11.

handle.net

hdl.handle.net

Tokuriki N, Jackson CJ, Afriat-Jurnou L, Wyganowski KT, Tang R, Tawfik DS (2012). "Diminishing returns and tradeoffs constrain the laboratory optimization of an enzyme". Nature Communications. 3: 1257. Bibcode:2012NatCo...3.1257T. doi:10.1038/ncomms2246. hdl:1885/69835. PMID 23212386.
Wouters MA, Liu K, Riek P, Husain A (August 2003). "A despecialization step underlying evolution of a family of serine proteases". Molecular Cell. 12 (2): 343–54. doi:10.1016/s1097-2765(03)00308-3. hdl:10536/DRO/DU:30038994. PMID 14536074.

harvard.edu

ui.adsabs.harvard.edu

Scott C, Jackson CJ, Coppin CW, Mourant RG, Hilton ME, Sutherland TD, Russell RJ, Oakeshott JG (April 2009). "Catalytic improvement and evolution of atrazine chlorohydrolase". Applied and Environmental Microbiology. 75 (7): 2184–91. Bibcode:2009ApEnM..75.2184S. doi:10.1128/AEM.02634-08. PMC 2663207. PMID 19201959.
Tokuriki N, Jackson CJ, Afriat-Jurnou L, Wyganowski KT, Tang R, Tawfik DS (2012). "Diminishing returns and tradeoffs constrain the laboratory optimization of an enzyme". Nature Communications. 3: 1257. Bibcode:2012NatCo...3.1257T. doi:10.1038/ncomms2246. hdl:1885/69835. PMID 23212386.
Williams PD, Pollock DD, Blackburne BP, Goldstein RA (June 2006). "Assessing the accuracy of ancestral protein reconstruction methods". PLOS Computational Biology. 2 (6): e69. Bibcode:2006PLSCB...2...69W. doi:10.1371/journal.pcbi.0020069. PMC 1480538. PMID 16789817.
Thornton JW, Need E, Crews D (September 2003). "Resurrecting the ancestral steroid receptor: ancient origin of estrogen signaling". Science. 301 (5640): 1714–7. Bibcode:2003Sci...301.1714T. doi:10.1126/science.1086185. PMID 14500980. S2CID 37628350.
Fondi M, Brilli M, Emiliani G, Paffetti D, Fani R (2007). "The primordial metabolism: an ancestral interconnection between leucine, arginine, and lysine biosynthesis". BMC Evolutionary Biology. 7 (Suppl 2): S3. Bibcode:2007BMCEE...7S...3F. doi:10.1186/1471-2148-7-S2-S3. PMC 1963480. PMID 17767731.
Soo VW, Hanson-Manful P, Patrick WM (January 2011). "Artificial gene amplification reveals an abundance of promiscuous resistance determinants in Escherichia coli". Proceedings of the National Academy of Sciences of the United States of America. 108 (4): 1484–9. Bibcode:2011PNAS..108.1484S. doi:10.1073/pnas.1012108108. PMC 3029738. PMID 21173244.
Yoshikuni Y, Ferrin TE, Keasling JD (April 2006). "Designed divergent evolution of enzyme function". Nature. 440 (7087): 1078–82. Bibcode:2006Natur.440.1078Y. doi:10.1038/nature04607. PMID 16495946. S2CID 4394693.
Ma W, Tang C, Lai L (August 2005). "Specificity of trypsin and chymotrypsin: loop-motion-controlled dynamic correlation as a determinant". Biophysical Journal. 89 (2): 1183–93. arXiv:q-bio/0505037. Bibcode:2005BpJ....89.1183M. doi:10.1529/biophysj.104.057158. PMC 1366603. PMID 15923233.
Vasu K, Nagamalleswari E, Nagaraja V (May 2012). "Promiscuous restriction is a cellular defense strategy that confers fitness advantage to bacteria". Proceedings of the National Academy of Sciences of the United States of America. 109 (20): E1287–93. Bibcode:2012PNAS..109E1287V. doi:10.1073/pnas.1119226109. PMC 3356625. PMID 22509013.
Weng JK, Philippe RN, Noel JP (June 2012). "The rise of chemodiversity in plants". Science. 336 (6089): 1667–70. Bibcode:2012Sci...336.1667W. doi:10.1126/science.1217411. PMID 22745420. S2CID 206539148.
Bornscheuer UT, Huisman GW, Kazlauskas RJ, Lutz S, Moore JC, Robins K (May 2012). "Engineering the third wave of biocatalysis". Nature. 485 (7397): 185–94. Bibcode:2012Natur.485..185B. doi:10.1038/nature11117. PMID 22575958. S2CID 4379415.

nih.gov

pubmed.ncbi.nlm.nih.gov

Khersonsky O, Tawfik DS (2010). "Enzyme promiscuity: a mechanistic and evolutionary perspective". Annual Review of Biochemistry. 79: 471–505. doi:10.1146/annurev-biochem-030409-143718. PMID 20235827.
Scott C, Jackson CJ, Coppin CW, Mourant RG, Hilton ME, Sutherland TD, Russell RJ, Oakeshott JG (April 2009). "Catalytic improvement and evolution of atrazine chlorohydrolase". Applied and Environmental Microbiology. 75 (7): 2184–91. Bibcode:2009ApEnM..75.2184S. doi:10.1128/AEM.02634-08. PMC 2663207. PMID 19201959.
Voordeckers K, Brown CA, Vanneste K, van der Zande E, Voet A, Maere S, Verstrepen KJ (2012). Thornton JW (ed.). "Reconstruction of ancestral metabolic enzymes reveals molecular mechanisms underlying evolutionary innovation through gene duplication". PLOS Biology. 10 (12): e1001446. doi:10.1371/journal.pbio.1001446. PMC 3519909. PMID 23239941.
Patrick WM, Quandt EM, Swartzlander DB, Matsumura I (December 2007). "Multicopy suppression underpins metabolic evolvability". Molecular Biology and Evolution. 24 (12): 2716–22. doi:10.1093/molbev/msm204. PMC 2678898. PMID 17884825.
Aharoni A, Gaidukov L, Khersonsky O, McQ Gould S, Roodveldt C, Tawfik DS (January 2005). "The 'evolvability' of promiscuous protein functions". Nature Genetics. 37 (1): 73–6. doi:10.1038/ng1482. PMID 15568024. S2CID 8245673.
Tokuriki N, Jackson CJ, Afriat-Jurnou L, Wyganowski KT, Tang R, Tawfik DS (2012). "Diminishing returns and tradeoffs constrain the laboratory optimization of an enzyme". Nature Communications. 3: 1257. Bibcode:2012NatCo...3.1257T. doi:10.1038/ncomms2246. hdl:1885/69835. PMID 23212386.
Williams PD, Pollock DD, Blackburne BP, Goldstein RA (June 2006). "Assessing the accuracy of ancestral protein reconstruction methods". PLOS Computational Biology. 2 (6): e69. Bibcode:2006PLSCB...2...69W. doi:10.1371/journal.pcbi.0020069. PMC 1480538. PMID 16789817.
Stemmer WP, Crameri A, Ha KD, Brennan TM, Heyneker HL (October 1995). "Single-step assembly of a gene and entire plasmid from large numbers of oligodeoxyribonucleotides". Gene. 164 (1): 49–53. doi:10.1016/0378-1119(95)00511-4. PMID 7590320.
Wouters MA, Liu K, Riek P, Husain A (August 2003). "A despecialization step underlying evolution of a family of serine proteases". Molecular Cell. 12 (2): 343–54. doi:10.1016/s1097-2765(03)00308-3. hdl:10536/DRO/DU:30038994. PMID 14536074.
Thornton JW (May 2004). "Resurrecting ancient genes: experimental analysis of extinct molecules" (PDF). Nature Reviews Genetics. 5 (5): 366–75. doi:10.1038/nrg1324. PMID 15143319. S2CID 205482979. Archived (PDF) from the original on 2012-03-27.
Thornton JW, Need E, Crews D (September 2003). "Resurrecting the ancestral steroid receptor: ancient origin of estrogen signaling". Science. 301 (5640): 1714–7. Bibcode:2003Sci...301.1714T. doi:10.1126/science.1086185. PMID 14500980. S2CID 37628350.
Jensen RA (1976). "Enzyme recruitment in evolution of new function". Annual Review of Microbiology. 30: 409–25. doi:10.1146/annurev.mi.30.100176.002205. PMID 791073.
Fondi M, Brilli M, Emiliani G, Paffetti D, Fani R (2007). "The primordial metabolism: an ancestral interconnection between leucine, arginine, and lysine biosynthesis". BMC Evolutionary Biology. 7 (Suppl 2): S3. Bibcode:2007BMCEE...7S...3F. doi:10.1186/1471-2148-7-S2-S3. PMC 1963480. PMID 17767731.
Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006). "Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection". Molecular Systems Biology. 2: 2006.0008. doi:10.1038/msb4100050. PMC 1681482. PMID 16738554.
Kitagawa M, Ara T, Arifuzzaman M, Ioka-Nakamichi T, Inamoto E, Toyonaga H, Mori H (2006). "Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research". DNA Research. 12 (5): 291–9. doi:10.1093/dnares/dsi012. PMID 16769691.
Soo VW, Hanson-Manful P, Patrick WM (January 2011). "Artificial gene amplification reveals an abundance of promiscuous resistance determinants in Escherichia coli". Proceedings of the National Academy of Sciences of the United States of America. 108 (4): 1484–9. Bibcode:2011PNAS..108.1484S. doi:10.1073/pnas.1012108108. PMC 3029738. PMID 21173244.
O'Brien PJ, Herschlag D (May 2001). "Functional interrelationships in the alkaline phosphatase superfamily: phosphodiesterase activity of Escherichia coli alkaline phosphatase". Biochemistry. 40 (19): 5691–9. CiteSeerX 10.1.1.322.8876. doi:10.1021/bi0028892. PMID 11341834.
Zhao C, Kumada Y, Imanaka H, Imamura K, Nakanishi K (June 2006). "Cloning, overexpression, purification, and characterization of O-acetylserine sulfhydrylase-B from Escherichia coli". Protein Expression and Purification. 47 (2): 607–13. doi:10.1016/j.pep.2006.01.002. PMID 16546401.
Tokuriki N, Tawfik DS (October 2009). "Stability effects of mutations and protein evolvability". Current Opinion in Structural Biology. 19 (5): 596–604. doi:10.1016/j.sbi.2009.08.003. PMID 19765975.
Daumann LJ, McCarthy BY, Hadler KS, Murray TP, Gahan LR, Larrabee JA, Ollis DL, Schenk G (January 2013). "Promiscuity comes at a price: catalytic versatility vs efficiency in different metal ion derivatives of the potential bioremediator GpdQ". Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics. 1834 (1): 425–32. doi:10.1016/j.bbapap.2012.02.004. PMID 22366468.
Schmidt DM, Mundorff EC, Dojka M, Bermudez E, Ness JE, Govindarajan S, Babbitt PC, Minshull J, Gerlt JA (July 2003). "Evolutionary potential of (beta/alpha)8-barrels: functional promiscuity produced by single substitutions in the enolase superfamily". Biochemistry. 42 (28): 8387–93. doi:10.1021/bi034769a. PMID 12859183.
Yoshikuni Y, Ferrin TE, Keasling JD (April 2006). "Designed divergent evolution of enzyme function". Nature. 440 (7087): 1078–82. Bibcode:2006Natur.440.1078Y. doi:10.1038/nature04607. PMID 16495946. S2CID 4394693.
Ma W, Tang C, Lai L (August 2005). "Specificity of trypsin and chymotrypsin: loop-motion-controlled dynamic correlation as a determinant". Biophysical Journal. 89 (2): 1183–93. arXiv:q-bio/0505037. Bibcode:2005BpJ....89.1183M. doi:10.1529/biophysj.104.057158. PMC 1366603. PMID 15923233.
Yasutake Y, Yao M, Sakai N, Kirita T, Tanaka I (November 2004). "Crystal structure of the Pyrococcus horikoshii isopropylmalate isomerase small subunit provides insight into the dual substrate specificity of the enzyme". Journal of Molecular Biology. 344 (2): 325–33. doi:10.1016/j.jmb.2004.09.035. PMID 15522288.
Perona JJ, Hadd A (November 2012). "Structural diversity and protein engineering of the aminoacyl-tRNA synthetases". Biochemistry. 51 (44): 8705–29. doi:10.1021/bi301180x. PMID 23075299.
Villiers BR, Hollfelder F (March 2009). "Mapping the limits of substrate specificity of the adenylation domain of TycA". ChemBioChem. 10 (4): 671–82. doi:10.1002/cbic.200800553. PMID 19189362. S2CID 21536526.
Vasu K, Nagamalleswari E, Nagaraja V (May 2012). "Promiscuous restriction is a cellular defense strategy that confers fitness advantage to bacteria". Proceedings of the National Academy of Sciences of the United States of America. 109 (20): E1287–93. Bibcode:2012PNAS..109E1287V. doi:10.1073/pnas.1119226109. PMC 3356625. PMID 22509013.
Weng JK, Philippe RN, Noel JP (June 2012). "The rise of chemodiversity in plants". Science. 336 (6089): 1667–70. Bibcode:2012Sci...336.1667W. doi:10.1126/science.1217411. PMID 22745420. S2CID 206539148.
Bornscheuer UT, Huisman GW, Kazlauskas RJ, Lutz S, Moore JC, Robins K (May 2012). "Engineering the third wave of biocatalysis". Nature. 485 (7397): 185–94. Bibcode:2012Natur.485..185B. doi:10.1038/nature11117. PMID 22575958. S2CID 4379415.
Shin JS, Kim BG (August 2001). "Comparison of the omega-transaminases from different microorganisms and application to production of chiral amines". Bioscience, Biotechnology, and Biochemistry. 65 (8): 1782–8. doi:10.1271/bbb.65.1782. PMID 11577718.
Maier TH (April 2003). "Semisynthetic production of unnatural L-alpha-amino acids by metabolic engineering of the cysteine-biosynthetic pathway". Nature Biotechnology. 21 (4): 422–7. doi:10.1038/nbt807. PMID 12640465. S2CID 22280900.
Rahman SA, Cuesta SM, Furnham N, Holliday GL, Thornton JM (February 2014). "EC-BLAST: a tool to automatically search and compare enzyme reactions". Nature Methods. 11 (2): 171–4. doi:10.1038/nmeth.2803. PMC 4122987. PMID 24412978.
Jakoby WB, Ziegler DM (December 1990). "The enzymes of detoxication". The Journal of Biological Chemistry. 265 (34): 20715–8. doi:10.1016/S0021-9258(17)45272-0. PMID 2249981.

ncbi.nlm.nih.gov

Scott C, Jackson CJ, Coppin CW, Mourant RG, Hilton ME, Sutherland TD, Russell RJ, Oakeshott JG (April 2009). "Catalytic improvement and evolution of atrazine chlorohydrolase". Applied and Environmental Microbiology. 75 (7): 2184–91. Bibcode:2009ApEnM..75.2184S. doi:10.1128/AEM.02634-08. PMC 2663207. PMID 19201959.
Voordeckers K, Brown CA, Vanneste K, van der Zande E, Voet A, Maere S, Verstrepen KJ (2012). Thornton JW (ed.). "Reconstruction of ancestral metabolic enzymes reveals molecular mechanisms underlying evolutionary innovation through gene duplication". PLOS Biology. 10 (12): e1001446. doi:10.1371/journal.pbio.1001446. PMC 3519909. PMID 23239941.
Patrick WM, Quandt EM, Swartzlander DB, Matsumura I (December 2007). "Multicopy suppression underpins metabolic evolvability". Molecular Biology and Evolution. 24 (12): 2716–22. doi:10.1093/molbev/msm204. PMC 2678898. PMID 17884825.
Williams PD, Pollock DD, Blackburne BP, Goldstein RA (June 2006). "Assessing the accuracy of ancestral protein reconstruction methods". PLOS Computational Biology. 2 (6): e69. Bibcode:2006PLSCB...2...69W. doi:10.1371/journal.pcbi.0020069. PMC 1480538. PMID 16789817.
Fondi M, Brilli M, Emiliani G, Paffetti D, Fani R (2007). "The primordial metabolism: an ancestral interconnection between leucine, arginine, and lysine biosynthesis". BMC Evolutionary Biology. 7 (Suppl 2): S3. Bibcode:2007BMCEE...7S...3F. doi:10.1186/1471-2148-7-S2-S3. PMC 1963480. PMID 17767731.
Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006). "Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection". Molecular Systems Biology. 2: 2006.0008. doi:10.1038/msb4100050. PMC 1681482. PMID 16738554.
Soo VW, Hanson-Manful P, Patrick WM (January 2011). "Artificial gene amplification reveals an abundance of promiscuous resistance determinants in Escherichia coli". Proceedings of the National Academy of Sciences of the United States of America. 108 (4): 1484–9. Bibcode:2011PNAS..108.1484S. doi:10.1073/pnas.1012108108. PMC 3029738. PMID 21173244.
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