References analysis of the Wikipedia article "Epitope" in the English version

doi.org

Mahmoudi Gomari, Mohammad; Saraygord-Afshari, Neda; Farsimadan, Marziye; Rostami, Neda; Aghamiri, Shahin; Farajollahi, Mohammad M. (1 December 2020). "Opportunities and challenges of the tag-assisted protein purification techniques: Applications in the pharmaceutical industry". Biotechnology Advances. 45: 107653. doi:10.1016/j.biotechadv.2020.107653. PMID 33157154. S2CID 226276355.

Huang J, Honda W (April 2006). "CED: a conformational epitope database". BMC Immunology. 7: 7. doi:10.1186/1471-2172-7-7. PMC 1513601. PMID 16603068.

Anfinsen CB (July 1973). "Principles that govern the folding of protein chains". Science. 181 (4096): 223–230. Bibcode:1973Sci...181..223A. doi:10.1126/science.181.4096.223. PMID 4124164.

Bergmann CC, Tong L, Cua R, Sensintaffar J, Stohlman S (August 1994). "Differential effects of flanking residues on presentation of epitopes from chimeric peptides". Journal of Virology. 68 (8): 5306–10. doi:10.1128/JVI.68.8.5306-5310.1994. PMC 236480. PMID 7518534.

Bergmann CC, Yao Q, Ho CK, Buckwold SL (October 1996). "Flanking residues alter antigenicity and immunogenicity of multi-unit CTL epitopes". Journal of Immunology. 157 (8): 3242–9. doi:10.4049/jimmunol.157.8.3242. PMID 8871618. S2CID 24717835.

Briggs S, Price MR, Tendler SJ (1993). "Fine specificity of antibody recognition of carcinoma-associated epithelial mucins: antibody binding to synthetic peptide epitopes". European Journal of Cancer. 29A (2): 230–7. doi:10.1016/0959-8049(93)90181-E. PMID 7678496.

Craig L, Sanschagrin PC, Rozek A, Lackie S, Kuhn LA, Scott JK (August 1998). "The role of structure in antibody cross-reactivity between peptides and folded proteins". Journal of Molecular Biology. 281 (1): 183–201. doi:10.1006/jmbi.1998.1907. PMID 9680484.

Ferdous, Saba; Kelm, Sebastian; Baker, Terry S.; Shi, Jiye; Martin, Andrew C. R. (1 October 2019). "B-cell epitopes: Discontinuity and conformational analysis". Molecular Immunology. 114: 643–650. doi:10.1016/j.molimm.2019.09.014. PMID 31546099. S2CID 202747810.

Steers NJ, Currier JR, Jobe O, Tovanabutra S, Ratto-Kim S, Marovich MA, et al. (June 2014). "Designing the epitope flanking regions for optimal generation of CTL epitopes". Vaccine. 32 (28): 3509–16. doi:10.1016/j.vaccine.2014.04.039. PMID 24795226.

Sanchez-Trincado, Jose L.; Gomez-Perosanz, Marta; Reche, Pedro A. (2017). "Fundamentals and Methods for T- and B-Cell Epitope Prediction". Journal of Immunology Research. 2017: 1–14. doi:10.1155/2017/2680160. PMC 5763123. PMID 29445754.

El-Manzalawy Y, Honavar V (November 2010). "Recent advances in B-cell epitope prediction methods". Immunome Research. 6 (Suppl 2): S2. doi:10.1186/1745-7580-6-S2-S2. PMC 2981878. PMID 21067544.

Regenmortel, Marc H.V. (2009). "What is a B-Cell Epitope?". Epitope Mapping Protocols. Methods in Molecular Biology. Vol. 524. pp. 3–20. doi:10.1007/978-1-59745-450-6_1. ISBN 978-1-934115-17-6. PMID 19377933.

Koren, E.; Groot, Anne De; Jawa, V.; Beck, K.; Boone, T.; Rivera, D.; Li, L.; Mytych, D.; Koscec, M.; Weeraratne, D.; Swanson, S.; Martin, W. (1 January 2007). "Clinical validation of the 'in silico' prediction of immunogenicity of a human recombinant therapeutic protein". Institute for Immunology and Informatics Faculty Publications. 124 (1): 26–32. doi:10.1016/j.clim.2007.03.544. PMID 17490912. S2CID 12867280.

De Groot, Anne S.; Martin, William (May 2009). "Reducing risk, improving outcomes: Bioengineering less immunogenic protein therapeutics". Clinical Immunology. 131 (2): 189–201. doi:10.1016/j.clim.2009.01.009. PMID 19269256.

Peters, Bjoern; Nielsen, Morten; Sette, Alessandro (26 April 2020). "T Cell Epitope Predictions". Annual Review of Immunology. 38 (1): 123–145. doi:10.1146/annurev-immunol-082119-124838. PMC 10878398. PMID 32045313. S2CID 211085860.

Ahmad, Tarek A.; Eweida, Amrou E.; El-Sayed, Laila H. (December 2016). "T-cell epitope mapping for the design of powerful vaccines". Vaccine Reports. 6: 13–22. doi:10.1016/j.vacrep.2016.07.002.

Dezfulian MH, Kula T, Pranzatelli T, Kamitaki N, Meng Q, Khatri B, Perez P, Xu Q, Chang A, Kohlgruber AC, Leng Y, Jupudi AA, Joachims ML, Chiorini JA, Lessard CJ, Farris AD, Muthuswamy SK, Warner BM, Elledge SJ (December 2023). "TScan-II: A genome-scale platform for the de novo identification of CD4+ T cell epitopes". Cell. 186 (25): 5569–86. doi:10.1016/j.cell.2023.10.024. PMID 38016469.

Kula T, Dezfulian MH, Wang CI, Abdelfattah NS, Hartman ZC, Wucherpfennig KW, Lyerly HK, Elledge SJ (August 2019). "T-Scan: A Genome-wide Method for the Systematic Discovery of T Cell Epitopes". Cell. 178 (4): 1016–28. doi:10.1016/j.cell.2019.07.009. PMC 6939866. PMID 31398327.

Potocnakova, Lenka; Bhide, Mangesh; Pulzova, Lucia Borszekova (2016). "An Introduction to B-Cell Epitope Mapping and In Silico Epitope Prediction". Journal of Immunology Research. 2016: 1–11. doi:10.1155/2016/6760830. PMC 5227168. PMID 28127568.

Davidson, Edgar; Doranz, Benjamin J. (September 2014). "A high-throughput shotgun mutagenesis approach to mapping B-cell antibody epitopes". Immunology. 143 (1): 13–20. doi:10.1111/imm.12323. PMC 4137951. PMID 24854488.

Ahmad, Tarek A.; Eweida, Amrou E.; Sheweita, Salah A. (2016). "B-cell epitope mapping for the design of vaccines and effective diagnostics". Trials in Vaccinology. 5: 71–83. doi:10.1016/j.trivac.2016.04.003.

Park HR, Cockrell LM, Du Y, Kasinski A, Havel J, Zhao J, Reyes-Turcu F, Wilkinson KD, Fu H (2008). "Protein–Protein Interactions". In Walker J, Rapley R (eds.). Molecular bio-methods handbook (2nd ed.). Humana Press. pp. 463–494, See p. 467. doi:10.1007/978-1-60327-375-6. ISBN 978-1-60327-374-9.

Zakeri B, Fierer JO, Celik E, Chittock EC, Schwarz-Linek U, Moy VT, Howarth M (March 2012). "Peptide tag forming a rapid covalent bond to a protein, through engineering a bacterial adhesin". Proceedings of the National Academy of Sciences of the United States of America. 109 (12): E690–7. Bibcode:2012PNAS..109E.690Z. doi:10.1073/pnas.1115485109. PMC 3311370. PMID 22366317.

Correia BE, Bates JT, Loomis RJ, Baneyx G, Carrico C, Jardine JG, et al. (March 2014). "Proof of principle for epitope-focused vaccine design". Nature. 507 (7491): 201–6. Bibcode:2014Natur.507..201C. doi:10.1038/nature12966. PMC 4260937. PMID 24499818.

McBurney SP, Sunshine JE, Gabriel S, Huynh JP, Sutton WF, Fuller DH, et al. (June 2016). "Evaluation of protection induced by a dengue virus serotype 2 envelope domain III protein scaffold/DNA vaccine in non-human primates". Vaccine. 34 (30): 3500–7. doi:10.1016/j.vaccine.2016.03.108. PMC 4959041. PMID 27085173.

Parvizpour, Sepideh; Pourseif, Mohammad M.; Razmara, Jafar; Rafi, Mohammad A.; Omidi, Yadollah (June 2020). "Epitope-based vaccine design: a comprehensive overview of bioinformatics approaches". Drug Discovery Today. 25 (6): 1034–42. doi:10.1016/j.drudis.2020.03.006. PMID 32205198. S2CID 214629963.

Hans-Werner V (2005). "Neoantigen-Forming Chemicals". Encyclopedic Reference of Immunotoxicology. p. 475. doi:10.1007/3-540-27806-0_1063. ISBN 978-3540441724.

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Huang J, Honda W (April 2006). "CED: a conformational epitope database". BMC Immunology. 7: 7. doi:10.1186/1471-2172-7-7. PMC 1513601. PMID 16603068.

Anfinsen CB (July 1973). "Principles that govern the folding of protein chains". Science. 181 (4096): 223–230. Bibcode:1973Sci...181..223A. doi:10.1126/science.181.4096.223. PMID 4124164.

El-Manzalawy Y, Honavar V (November 2010). "Recent advances in B-cell epitope prediction methods". Immunome Research. 6 (Suppl 2): S2. doi:10.1186/1745-7580-6-S2-S2. PMC 2981878. PMID 21067544.

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Epitope (English Wikipedia)

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