Excavata (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Excavata" in English language version.

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doi.org

Hampl, Vladimir; Hug, Laura; Leigh, Jessica W.; et al. (2009). "Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups"". PNAS. 106 (10): 3859–3864. Bibcode:2009PNAS..106.3859H. doi:10.1073/pnas.0807880106. PMC 2656170. PMID 19237557.
Simpson, Alastair G. B.; Inagaki, Yuji; Roger, Andrew J. (2006). "Comprehensive multigene phylogenies of excavate protists reveal the evolutionary positions of "primitive" eukaryotes". Molecular Biology and Evolution. 23 (3): 615–625. doi:10.1093/molbev/msj068. PMID 16308337.
Simpson, Alastair G.B.; Patterson, David J. (December 1999). "The ultrastructure of Carpediemonas membranifera (Eukaryota) with reference to the 'excavate hypothesis'". European Journal of Protistology. 35 (4): 353–370. doi:10.1016/S0932-4739(99)80044-3.
Simpson, Alastair G. B. (November 2003). "Cytoskeletal organization, phylogenetic affinities and systematics in the contentious taxon Excavata (Eukaryota)". International Journal of Systematic and Evolutionary Microbiology. 53 (6): 1759–1777. doi:10.1099/ijs.0.02578-0. PMID 14657103.
Cavalier-Smith, Thomas (2002). "The phagotrophic origin of eukaryotes and phylogenetic classification of Protozoa". International Journal of Systematic and Evolutionary Microbiology. 52 (2): 297–354. doi:10.1099/00207713-52-2-297. PMID 11931142.
Dawson, Scott C.; Paredez, Alexander R. (2013). "Alternative cytoskeletal landscapes: cytoskeletal novelty and evolution in basal excavate protists". Current Opinion in Cell Biology. 25 (1): 134–141. doi:10.1016/j.ceb.2012.11.005. PMC 4927265. PMID 23312067.
Burki, Fabien; Roger, Andrew J.; Brown, Matthew W.; et al. (January 2020). "The New Tree of Eukaryotes". Trends in Ecology & Evolution. 35 (1): 43–55. doi:10.1016/j.tree.2019.08.008. PMID 31606140. S2CID 204545629.
Brown, Matthew W.; Heiss, Aaron A.; Kamikawa, Ryoma; et al. (2018-01-19). "Phylogenomics Places Orphan Protistan Lineages in a Novel Eukaryotic Super-Group". Genome Biology and Evolution. 10 (2): 427–433. doi:10.1093/gbe/evy014. PMC 5793813. PMID 29360967.
Heiss, Aaron A.; Kolisko, Martin; Ekelund, Fleming; et al. (4 April 2018). "Combined morphological and phylogenomic re-examination of malawimonads, a critical taxon for inferring the evolutionary history of eukaryotes". Royal Society Open Science. 5 (4): 171707. Bibcode:2018RSOS....571707H. doi:10.1098/rsos.171707. PMC 5936906. PMID 29765641.
Keeling, Patrick J.; Burki, Fabien (19 August 2019). "Progress towards the Tree of Eukaryotes". Current Biology. 29 (16): R808 – R817. Bibcode:2019CBio...29.R808K. doi:10.1016/j.cub.2019.07.031. PMID 31430481.
Laura Wegener Parfrey; Erika Barbero; Elyse Lasser; Micah Dunthorn; Debashish Bhattacharya; David J Patterson; Laura A Katz (December 2006). "Evaluating support for the current classification of eukaryotic diversity". PLOS Genetics. 2 (12): e220. doi:10.1371/JOURNAL.PGEN.0020220. ISSN 1553-7390. PMC 1713255. PMID 17194223. Wikidata Q21090155.
Tice, Alexander K.; Žihala, David; Pánek, Tomáš; et al. (2021). "PhyloFisher: A phylogenomic package for resolving eukaryotic relationships". PLOS Biology. 19 (8): e3001365. doi:10.1371/journal.pbio.3001365. PMC 8345874. PMID 34358228.
Cavalier-Smith, Thomas (23 December 2009). "Kingdoms Protozoa and Chromista and the eozoan root of the eukaryotic tree". Biology Letters. 6 (3). The Royal Society: 342–345. doi:10.1098/rsbl.2009.0948. ISSN 1744-9561. PMC 2880060. PMID 20031978.
Rodríguez-Ezpeleta, Naiara; Brinkmann, Henner; Burger, Gertraud; et al. (2007). "Toward Resolving the Eukaryotic Tree: The Phylogenetic Positions of Jakobids and Cercozoans". Current Biology. 17 (16): 1420–1425. Bibcode:2007CBio...17.1420R. doi:10.1016/j.cub.2007.07.036. PMID 17689961.
Rodríguez-Ezpeleta N, Brinkmann H, Burger G, Roger AJ, Gray MW, Philippe H, Franz Lang B (2007). "Toward Resolving the Eukaryotic Tree: The Phylogenetic Positions of Jakobids and Cercozoans". Current Biology. 17 (16): 1420–1425. doi:10.1016/j.cub.2007.07.036. PMID 17689961.
Bui, Elisabeth T.; Bradley, Peter J.; Johnson, Patricia J. (3 September 1996). "A common evolutionary origin for mitochondria and hydrogenosomes". Proceedings of the National Academy of Sciences. 93 (18): 9651–9656. Bibcode:1996PNAS...93.9651B. doi:10.1073/pnas.93.18.9651. ISSN 0027-8424. PMC 38483. PMID 8790385.
Al Jewari, Caesar; Baldauf, Sandra L. (2023-04-28). "An excavate root for the eukaryote tree of life". Science Advances. 9 (17): eade4973. Bibcode:2023SciA....9E4973A. doi:10.1126/sciadv.ade4973. ISSN 2375-2548. PMC 10146883. PMID 37115919.
Tria, F.D.K.; Brueckner, J.; Skejo, J.; Xavier, J.C.; Kapust, N.; Knopp, M.; et al. (7 May 2021). "Gene Duplications Trace Mitochondria to the Onset of Eukaryote Complexity". Genome Biology and Evolution. 13 (5). doi:10.1093/gbe/evab055. PMC 8175051. PMID 33739376.
Eme, Laura; Tamarit, Daniel; Caceres, Eva F.; et al. (2023-03-09). "Inference and reconstruction of the heimdallarchaeial ancestry of eukaryotes". Nature. 618 (7967): 992–999. bioRxiv 10.1101/2023.03.07.531504. doi:10.1038/s41586-023-06186-2. PMC 10307638. PMID 37316666.
Stairs, Courtney W.; Táborský, Petr; Salomaki, Eric D.; et al. (December 2021). "Anaeramoebae are a divergent lineage of eukaryotes that shed light on the transition from anaerobic mitochondria to hydrogenosomes". Current Biology. 31 (24): 5605–5612.e5. Bibcode:2021CBio...31E5605S. doi:10.1016/j.cub.2021.10.010. ISSN 0960-9822. PMID 34710348. S2CID 240054026.

harvard.edu

ui.adsabs.harvard.edu

Hampl, Vladimir; Hug, Laura; Leigh, Jessica W.; et al. (2009). "Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups"". PNAS. 106 (10): 3859–3864. Bibcode:2009PNAS..106.3859H. doi:10.1073/pnas.0807880106. PMC 2656170. PMID 19237557.
Heiss, Aaron A.; Kolisko, Martin; Ekelund, Fleming; et al. (4 April 2018). "Combined morphological and phylogenomic re-examination of malawimonads, a critical taxon for inferring the evolutionary history of eukaryotes". Royal Society Open Science. 5 (4): 171707. Bibcode:2018RSOS....571707H. doi:10.1098/rsos.171707. PMC 5936906. PMID 29765641.
Keeling, Patrick J.; Burki, Fabien (19 August 2019). "Progress towards the Tree of Eukaryotes". Current Biology. 29 (16): R808 – R817. Bibcode:2019CBio...29.R808K. doi:10.1016/j.cub.2019.07.031. PMID 31430481.
Rodríguez-Ezpeleta, Naiara; Brinkmann, Henner; Burger, Gertraud; et al. (2007). "Toward Resolving the Eukaryotic Tree: The Phylogenetic Positions of Jakobids and Cercozoans". Current Biology. 17 (16): 1420–1425. Bibcode:2007CBio...17.1420R. doi:10.1016/j.cub.2007.07.036. PMID 17689961.
Bui, Elisabeth T.; Bradley, Peter J.; Johnson, Patricia J. (3 September 1996). "A common evolutionary origin for mitochondria and hydrogenosomes". Proceedings of the National Academy of Sciences. 93 (18): 9651–9656. Bibcode:1996PNAS...93.9651B. doi:10.1073/pnas.93.18.9651. ISSN 0027-8424. PMC 38483. PMID 8790385.
Al Jewari, Caesar; Baldauf, Sandra L. (2023-04-28). "An excavate root for the eukaryote tree of life". Science Advances. 9 (17): eade4973. Bibcode:2023SciA....9E4973A. doi:10.1126/sciadv.ade4973. ISSN 2375-2548. PMC 10146883. PMID 37115919.
Stairs, Courtney W.; Táborský, Petr; Salomaki, Eric D.; et al. (December 2021). "Anaeramoebae are a divergent lineage of eukaryotes that shed light on the transition from anaerobic mitochondria to hydrogenosomes". Current Biology. 31 (24): 5605–5612.e5. Bibcode:2021CBio...31E5605S. doi:10.1016/j.cub.2021.10.010. ISSN 0960-9822. PMID 34710348. S2CID 240054026.

nih.gov

pubmed.ncbi.nlm.nih.gov

Hampl, Vladimir; Hug, Laura; Leigh, Jessica W.; et al. (2009). "Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups"". PNAS. 106 (10): 3859–3864. Bibcode:2009PNAS..106.3859H. doi:10.1073/pnas.0807880106. PMC 2656170. PMID 19237557.
Simpson, Alastair G. B.; Inagaki, Yuji; Roger, Andrew J. (2006). "Comprehensive multigene phylogenies of excavate protists reveal the evolutionary positions of "primitive" eukaryotes". Molecular Biology and Evolution. 23 (3): 615–625. doi:10.1093/molbev/msj068. PMID 16308337.
Simpson, Alastair G. B. (November 2003). "Cytoskeletal organization, phylogenetic affinities and systematics in the contentious taxon Excavata (Eukaryota)". International Journal of Systematic and Evolutionary Microbiology. 53 (6): 1759–1777. doi:10.1099/ijs.0.02578-0. PMID 14657103.
Cavalier-Smith, Thomas (2002). "The phagotrophic origin of eukaryotes and phylogenetic classification of Protozoa". International Journal of Systematic and Evolutionary Microbiology. 52 (2): 297–354. doi:10.1099/00207713-52-2-297. PMID 11931142.
Dawson, Scott C.; Paredez, Alexander R. (2013). "Alternative cytoskeletal landscapes: cytoskeletal novelty and evolution in basal excavate protists". Current Opinion in Cell Biology. 25 (1): 134–141. doi:10.1016/j.ceb.2012.11.005. PMC 4927265. PMID 23312067.
Burki, Fabien; Roger, Andrew J.; Brown, Matthew W.; et al. (January 2020). "The New Tree of Eukaryotes". Trends in Ecology & Evolution. 35 (1): 43–55. doi:10.1016/j.tree.2019.08.008. PMID 31606140. S2CID 204545629.
Brown, Matthew W.; Heiss, Aaron A.; Kamikawa, Ryoma; et al. (2018-01-19). "Phylogenomics Places Orphan Protistan Lineages in a Novel Eukaryotic Super-Group". Genome Biology and Evolution. 10 (2): 427–433. doi:10.1093/gbe/evy014. PMC 5793813. PMID 29360967.
Heiss, Aaron A.; Kolisko, Martin; Ekelund, Fleming; et al. (4 April 2018). "Combined morphological and phylogenomic re-examination of malawimonads, a critical taxon for inferring the evolutionary history of eukaryotes". Royal Society Open Science. 5 (4): 171707. Bibcode:2018RSOS....571707H. doi:10.1098/rsos.171707. PMC 5936906. PMID 29765641.
Keeling, Patrick J.; Burki, Fabien (19 August 2019). "Progress towards the Tree of Eukaryotes". Current Biology. 29 (16): R808 – R817. Bibcode:2019CBio...29.R808K. doi:10.1016/j.cub.2019.07.031. PMID 31430481.
Laura Wegener Parfrey; Erika Barbero; Elyse Lasser; Micah Dunthorn; Debashish Bhattacharya; David J Patterson; Laura A Katz (December 2006). "Evaluating support for the current classification of eukaryotic diversity". PLOS Genetics. 2 (12): e220. doi:10.1371/JOURNAL.PGEN.0020220. ISSN 1553-7390. PMC 1713255. PMID 17194223. Wikidata Q21090155.
Tice, Alexander K.; Žihala, David; Pánek, Tomáš; et al. (2021). "PhyloFisher: A phylogenomic package for resolving eukaryotic relationships". PLOS Biology. 19 (8): e3001365. doi:10.1371/journal.pbio.3001365. PMC 8345874. PMID 34358228.
Cavalier-Smith, Thomas (23 December 2009). "Kingdoms Protozoa and Chromista and the eozoan root of the eukaryotic tree". Biology Letters. 6 (3). The Royal Society: 342–345. doi:10.1098/rsbl.2009.0948. ISSN 1744-9561. PMC 2880060. PMID 20031978.
Rodríguez-Ezpeleta, Naiara; Brinkmann, Henner; Burger, Gertraud; et al. (2007). "Toward Resolving the Eukaryotic Tree: The Phylogenetic Positions of Jakobids and Cercozoans". Current Biology. 17 (16): 1420–1425. Bibcode:2007CBio...17.1420R. doi:10.1016/j.cub.2007.07.036. PMID 17689961.
Rodríguez-Ezpeleta N, Brinkmann H, Burger G, Roger AJ, Gray MW, Philippe H, Franz Lang B (2007). "Toward Resolving the Eukaryotic Tree: The Phylogenetic Positions of Jakobids and Cercozoans". Current Biology. 17 (16): 1420–1425. doi:10.1016/j.cub.2007.07.036. PMID 17689961.
Bui, Elisabeth T.; Bradley, Peter J.; Johnson, Patricia J. (3 September 1996). "A common evolutionary origin for mitochondria and hydrogenosomes". Proceedings of the National Academy of Sciences. 93 (18): 9651–9656. Bibcode:1996PNAS...93.9651B. doi:10.1073/pnas.93.18.9651. ISSN 0027-8424. PMC 38483. PMID 8790385.
Al Jewari, Caesar; Baldauf, Sandra L. (2023-04-28). "An excavate root for the eukaryote tree of life". Science Advances. 9 (17): eade4973. Bibcode:2023SciA....9E4973A. doi:10.1126/sciadv.ade4973. ISSN 2375-2548. PMC 10146883. PMID 37115919.
Tria, F.D.K.; Brueckner, J.; Skejo, J.; Xavier, J.C.; Kapust, N.; Knopp, M.; et al. (7 May 2021). "Gene Duplications Trace Mitochondria to the Onset of Eukaryote Complexity". Genome Biology and Evolution. 13 (5). doi:10.1093/gbe/evab055. PMC 8175051. PMID 33739376.
Eme, Laura; Tamarit, Daniel; Caceres, Eva F.; et al. (2023-03-09). "Inference and reconstruction of the heimdallarchaeial ancestry of eukaryotes". Nature. 618 (7967): 992–999. bioRxiv 10.1101/2023.03.07.531504. doi:10.1038/s41586-023-06186-2. PMC 10307638. PMID 37316666.
Stairs, Courtney W.; Táborský, Petr; Salomaki, Eric D.; et al. (December 2021). "Anaeramoebae are a divergent lineage of eukaryotes that shed light on the transition from anaerobic mitochondria to hydrogenosomes". Current Biology. 31 (24): 5605–5612.e5. Bibcode:2021CBio...31E5605S. doi:10.1016/j.cub.2021.10.010. ISSN 0960-9822. PMID 34710348. S2CID 240054026.

ncbi.nlm.nih.gov

Hampl, Vladimir; Hug, Laura; Leigh, Jessica W.; et al. (2009). "Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups"". PNAS. 106 (10): 3859–3864. Bibcode:2009PNAS..106.3859H. doi:10.1073/pnas.0807880106. PMC 2656170. PMID 19237557.
Dawson, Scott C.; Paredez, Alexander R. (2013). "Alternative cytoskeletal landscapes: cytoskeletal novelty and evolution in basal excavate protists". Current Opinion in Cell Biology. 25 (1): 134–141. doi:10.1016/j.ceb.2012.11.005. PMC 4927265. PMID 23312067.
Brown, Matthew W.; Heiss, Aaron A.; Kamikawa, Ryoma; et al. (2018-01-19). "Phylogenomics Places Orphan Protistan Lineages in a Novel Eukaryotic Super-Group". Genome Biology and Evolution. 10 (2): 427–433. doi:10.1093/gbe/evy014. PMC 5793813. PMID 29360967.
Heiss, Aaron A.; Kolisko, Martin; Ekelund, Fleming; et al. (4 April 2018). "Combined morphological and phylogenomic re-examination of malawimonads, a critical taxon for inferring the evolutionary history of eukaryotes". Royal Society Open Science. 5 (4): 171707. Bibcode:2018RSOS....571707H. doi:10.1098/rsos.171707. PMC 5936906. PMID 29765641.
Laura Wegener Parfrey; Erika Barbero; Elyse Lasser; Micah Dunthorn; Debashish Bhattacharya; David J Patterson; Laura A Katz (December 2006). "Evaluating support for the current classification of eukaryotic diversity". PLOS Genetics. 2 (12): e220. doi:10.1371/JOURNAL.PGEN.0020220. ISSN 1553-7390. PMC 1713255. PMID 17194223. Wikidata Q21090155.
Tice, Alexander K.; Žihala, David; Pánek, Tomáš; et al. (2021). "PhyloFisher: A phylogenomic package for resolving eukaryotic relationships". PLOS Biology. 19 (8): e3001365. doi:10.1371/journal.pbio.3001365. PMC 8345874. PMID 34358228.
Cavalier-Smith, Thomas (23 December 2009). "Kingdoms Protozoa and Chromista and the eozoan root of the eukaryotic tree". Biology Letters. 6 (3). The Royal Society: 342–345. doi:10.1098/rsbl.2009.0948. ISSN 1744-9561. PMC 2880060. PMID 20031978.
Bui, Elisabeth T.; Bradley, Peter J.; Johnson, Patricia J. (3 September 1996). "A common evolutionary origin for mitochondria and hydrogenosomes". Proceedings of the National Academy of Sciences. 93 (18): 9651–9656. Bibcode:1996PNAS...93.9651B. doi:10.1073/pnas.93.18.9651. ISSN 0027-8424. PMC 38483. PMID 8790385.
Al Jewari, Caesar; Baldauf, Sandra L. (2023-04-28). "An excavate root for the eukaryote tree of life". Science Advances. 9 (17): eade4973. Bibcode:2023SciA....9E4973A. doi:10.1126/sciadv.ade4973. ISSN 2375-2548. PMC 10146883. PMID 37115919.
Tria, F.D.K.; Brueckner, J.; Skejo, J.; Xavier, J.C.; Kapust, N.; Knopp, M.; et al. (7 May 2021). "Gene Duplications Trace Mitochondria to the Onset of Eukaryote Complexity". Genome Biology and Evolution. 13 (5). doi:10.1093/gbe/evab055. PMC 8175051. PMID 33739376.
Eme, Laura; Tamarit, Daniel; Caceres, Eva F.; et al. (2023-03-09). "Inference and reconstruction of the heimdallarchaeial ancestry of eukaryotes". Nature. 618 (7967): 992–999. bioRxiv 10.1101/2023.03.07.531504. doi:10.1038/s41586-023-06186-2. PMC 10307638. PMID 37316666.

plos.org

journals.plos.org

Laura Wegener Parfrey; Erika Barbero; Elyse Lasser; Micah Dunthorn; Debashish Bhattacharya; David J Patterson; Laura A Katz (December 2006). "Evaluating support for the current classification of eukaryotic diversity". PLOS Genetics. 2 (12): e220. doi:10.1371/JOURNAL.PGEN.0020220. ISSN 1553-7390. PMC 1713255. PMID 17194223. Wikidata Q21090155.

semanticscholar.org

api.semanticscholar.org

Burki, Fabien; Roger, Andrew J.; Brown, Matthew W.; et al. (January 2020). "The New Tree of Eukaryotes". Trends in Ecology & Evolution. 35 (1): 43–55. doi:10.1016/j.tree.2019.08.008. PMID 31606140. S2CID 204545629.
Stairs, Courtney W.; Táborský, Petr; Salomaki, Eric D.; et al. (December 2021). "Anaeramoebae are a divergent lineage of eukaryotes that shed light on the transition from anaerobic mitochondria to hydrogenosomes". Current Biology. 31 (24): 5605–5612.e5. Bibcode:2021CBio...31E5605S. doi:10.1016/j.cub.2021.10.010. ISSN 0960-9822. PMID 34710348. S2CID 240054026.

wikidata.org

Laura Wegener Parfrey; Erika Barbero; Elyse Lasser; Micah Dunthorn; Debashish Bhattacharya; David J Patterson; Laura A Katz (December 2006). "Evaluating support for the current classification of eukaryotic diversity". PLOS Genetics. 2 (12): e220. doi:10.1371/JOURNAL.PGEN.0020220. ISSN 1553-7390. PMC 1713255. PMID 17194223. Wikidata Q21090155.

worldcat.org

search.worldcat.org

Laura Wegener Parfrey; Erika Barbero; Elyse Lasser; Micah Dunthorn; Debashish Bhattacharya; David J Patterson; Laura A Katz (December 2006). "Evaluating support for the current classification of eukaryotic diversity". PLOS Genetics. 2 (12): e220. doi:10.1371/JOURNAL.PGEN.0020220. ISSN 1553-7390. PMC 1713255. PMID 17194223. Wikidata Q21090155.
Cavalier-Smith, Thomas (23 December 2009). "Kingdoms Protozoa and Chromista and the eozoan root of the eukaryotic tree". Biology Letters. 6 (3). The Royal Society: 342–345. doi:10.1098/rsbl.2009.0948. ISSN 1744-9561. PMC 2880060. PMID 20031978.
Bui, Elisabeth T.; Bradley, Peter J.; Johnson, Patricia J. (3 September 1996). "A common evolutionary origin for mitochondria and hydrogenosomes". Proceedings of the National Academy of Sciences. 93 (18): 9651–9656. Bibcode:1996PNAS...93.9651B. doi:10.1073/pnas.93.18.9651. ISSN 0027-8424. PMC 38483. PMID 8790385.
Al Jewari, Caesar; Baldauf, Sandra L. (2023-04-28). "An excavate root for the eukaryote tree of life". Science Advances. 9 (17): eade4973. Bibcode:2023SciA....9E4973A. doi:10.1126/sciadv.ade4973. ISSN 2375-2548. PMC 10146883. PMID 37115919.
Stairs, Courtney W.; Táborský, Petr; Salomaki, Eric D.; et al. (December 2021). "Anaeramoebae are a divergent lineage of eukaryotes that shed light on the transition from anaerobic mitochondria to hydrogenosomes". Current Biology. 31 (24): 5605–5612.e5. Bibcode:2021CBio...31E5605S. doi:10.1016/j.cub.2021.10.010. ISSN 0960-9822. PMID 34710348. S2CID 240054026.