Experimental evolution (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Experimental evolution" in English language version.

refsWebsite

Global rank English rank

95nih.gov

4^th place

66doi.org

2^nd place

30harvard.edu

18^th place

17^th place

16semanticscholar.org

11^th place

8^th place

4worldcat.org

5^th place

3jstor.org

26^th place

20^th place

2web.archive.org

1^st place

1nature.com

234^th place

397^th place

1unil.ch

9,112^th place

7,304^th place

1ncse.ngo

low place

1zwz.ru

low place

1msu.edu

1,844^th place

1,231^st place

1uj.edu.pl

2,369^th place

9,181^st place

doi.org (Global: 2^nd place; English: 2^nd place)

Long A, Liti G, Luptak A, Tenaillon O (October 2015). "Elucidating the molecular architecture of adaptation via evolve and resequence experiments". Nature Reviews. Genetics. 16 (10): 567–582. doi:10.1038/nrg3937. PMC 4733663. PMID 26347030.
Kawecki, Tadeusz J.; Lenski, Richard E.; Ebert, Dieter; Hollis, Brian; Olivieri, Isabelle; Whitlock, Michael C. (October 2012). "Experimental evolution" (PDF). Trends in Ecology & Evolution. 27 (10): 547–560. Bibcode:2012TEcoE..27..547K. doi:10.1016/j.tree.2012.06.001. PMID 22819306.
Buckling A, Craig Maclean R, Brockhurst MA, Colegrave N (February 2009). "The Beagle in a bottle". Nature. 457 (7231): 824–829. Bibcode:2009Natur.457..824B. doi:10.1038/nature07892. PMID 19212400. S2CID 205216404.
Elena SF, Lenski RE (June 2003). "Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation". Nature Reviews. Genetics. 4 (6): 457–469. doi:10.1038/nrg1088. PMID 12776215. S2CID 209727.
Trut, Lyudmila (1999). "Early Canid Domestication: The Farm-Fox Experiment". American Scientist. 87 (2): 160–169. doi:10.1511/1999.2.160. JSTOR 27857815.
Reznick DN, Shaw FH, Rodd FH, Shaw RG (March 1997). "Evaluation of the Rate of Evolution in Natural Populations of Guppies (Poecilia reticulata)". Science. 275 (5308): 1934–1937. doi:10.1126/science.275.5308.1934. PMID 9072971. S2CID 18480502.
Barrick JE, Lenski RE (December 2013). "Genome dynamics during experimental evolution". Nature Reviews. Genetics. 14 (12): 827–839. doi:10.1038/nrg3564. PMC 4239992. PMID 24166031.
Jha AR, Miles CM, Lippert NR, Brown CD, White KP, Kreitman M (October 2015). "Whole-Genome Resequencing of Experimental Populations Reveals Polygenic Basis of Egg-Size Variation in Drosophila melanogaster". Molecular Biology and Evolution. 32 (10): 2616–2632. doi:10.1093/molbev/msv136. PMC 4576704. PMID 26044351.
Turner TL, Stewart AD, Fields AT, Rice WR, Tarone AM (March 2011). "Population-based resequencing of experimentally evolved populations reveals the genetic basis of body size variation in Drosophila melanogaster". PLOS Genetics. 7 (3) e1001336. doi:10.1371/journal.pgen.1001336. PMC 3060078. PMID 21437274.
Haas JW (January 2000). "The Reverend Dr William Henry Dallinger, F.R.S. (1839-1909)". Notes and Records of the Royal Society of London. 54 (1): 53–65. doi:10.1098/rsnr.2000.0096. PMID 11624308. S2CID 145758182.
Dobzhansky T, Pavlovsky O (1957). "An experimental study of interaction between genetic drift and natural selection". Evolution. 11 (3): 311–319. doi:10.2307/2405795. JSTOR 2405795.
Marden JH, Wolf MR, Weber KE (November 1997). "Aerial performance of Drosophila melanogaster from populations selected for upwind flight ability". The Journal of Experimental Biology. 200 (Pt 21): 2747–2755. Bibcode:1997JExpB.200.2747M. doi:10.1242/jeb.200.21.2747. PMID 9418031.
Ratcliff WC, Denison RF, Borrello M, Travisano M (January 2012). "Experimental evolution of multicellularity". Proceedings of the National Academy of Sciences of the United States of America. 109 (5): 1595–1600. Bibcode:2012PNAS..109.1595R. doi:10.1073/pnas.1115323109. PMC 3277146. PMID 22307617.
Barrick JE, Yu DS, Yoon SH, Jeong H, Oh TK, Schneider D, et al. (October 2009). "Genome evolution and adaptation in a long-term experiment with Escherichia coli". Nature. 461 (7268): 1243–1247. Bibcode:2009Natur.461.1243B. doi:10.1038/nature08480. PMID 19838166. S2CID 4330305.
Heineman RH, Molineux IJ, Bull JJ (August 2005). "Evolutionary robustness of an optimal phenotype: re-evolution of lysis in a bacteriophage deleted for its lysin gene". Journal of Molecular Evolution. 61 (2): 181–191. Bibcode:2005JMolE..61..181H. doi:10.1007/s00239-004-0304-4. PMID 16096681. S2CID 31230414.
Bloom JD, Arnold FH (June 2009). "In the light of directed evolution: pathways of adaptive protein evolution". Proceedings of the National Academy of Sciences of the United States of America. 106 (Suppl 1): 9995–10000. doi:10.1073/pnas.0901522106. PMC 2702793. PMID 19528653.
Moses AM, Davidson AR (May 2011). "In vitro evolution goes deep". Proceedings of the National Academy of Sciences of the United States of America. 108 (20): 8071–8072. Bibcode:2011PNAS..108.8071M. doi:10.1073/pnas.1104843108. PMC 3100951. PMID 21551096.
Salehi-Ashtiani K, Szostak JW (November 2001). "In vitro evolution suggests multiple origins for the hammerhead ribozyme". Nature. 414 (6859): 82–84. Bibcode:2001Natur.414...82S. doi:10.1038/35102081. PMID 11689947. S2CID 4401483.
Sumper M, Luce R (January 1975). "Evidence for de novo production of self-replicating and environmentally adapted RNA structures by bacteriophage Qbeta replicase". Proceedings of the National Academy of Sciences of the United States of America. 72 (1): 162–166. Bibcode:1975PNAS...72..162S. doi:10.1073/pnas.72.1.162. PMC 432262. PMID 1054493.
Mills DR, Peterson RL, Spiegelman S (July 1967). "An extracellular Darwinian experiment with a self-duplicating nucleic acid molecule". Proceedings of the National Academy of Sciences of the United States of America. 58 (1): 217–224. Bibcode:1967PNAS...58..217M. doi:10.1073/pnas.58.1.217. PMC 335620. PMID 5231602.
Rose MR (May 1984). "Artificial Selection on a Fitness-Component in Drosophila Melanogaster". Evolution; International Journal of Organic Evolution. 38 (3): 516–526. doi:10.2307/2408701. JSTOR 2408701. PMID 28555975.
Rose MR, Passananti HB, Matos M (2004). Methuselah Flies. Singapore: World Scientific. doi:10.1142/5457. ISBN 978-981-238-741-7.
Burke MK, Dunham JP, Shahrestani P, Thornton KR, Rose MR, Long AD (September 2010). "Genome-wide analysis of a long-term evolution experiment with Drosophila". Nature. 467 (7315): 587–590. Bibcode:2010Natur.467..587B. doi:10.1038/nature09352. PMID 20844486. S2CID 205222217.
Schlötterer C, Tobler R, Kofler R, Nolte V (November 2014). "Sequencing pools of individuals - mining genome-wide polymorphism data without big funding". Nature Reviews. Genetics. 15 (11): 749–763. doi:10.1038/nrg3803. PMID 25246196. S2CID 35827109.
Schlötterer C, Kofler R, Versace E, Tobler R, Franssen SU (May 2015). "Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation". Heredity. 114 (5): 431–440. Bibcode:2015Hered.114..431S. doi:10.1038/hdy.2014.86. PMC 4815507. PMID 25269380.
Zhou D, Xue J, Chen J, Morcillo P, Lambert JD, White KP, Haddad GG (May 2007). "Experimental selection for Drosophila survival in extremely low O(2) environment". PLOS ONE. 2 (5) e490. Bibcode:2007PLoSO...2..490Z. doi:10.1371/journal.pone.0000490. PMC 1871610. PMID 17534440.
Zhou D, Udpa N, Gersten M, Visk DW, Bashir A, Xue J, et al. (February 2011). "Experimental selection of hypoxia-tolerant Drosophila melanogaster". Proceedings of the National Academy of Sciences of the United States of America. 108 (6): 2349–2354. Bibcode:2011PNAS..108.2349Z. doi:10.1073/pnas.1010643108. PMC 3038716. PMID 21262834.
Remolina SC, Chang PL, Leips J, Nuzhdin SV, Hughes KA (November 2012). "Genomic basis of aging and life-history evolution in Drosophila melanogaster". Evolution; International Journal of Organic Evolution. 66 (11): 3390–3403. Bibcode:2012Evolu..66.3390R. doi:10.1111/j.1558-5646.2012.01710.x. PMC 4539122. PMID 23106705.
Shrivastava, Nidhi Krishna; Shakarad, Mallikarjun N. (May 2023). "Correlated responses in basal immune function in response to selection for fast development in Drosophila melanogaster". Journal of Evolutionary Biology. 36 (5): 816–828. doi:10.1111/jeb.14176. PMID 37073855.
Shrivastava, Nidhi Krishna; Chauhan, Namita; Shakarad, Mallikarjun N. (December 2022). "Heightened immune surveillance in Drosophila melanogaster populations selected for faster development and extended longevity". Heliyon. 8 (12) e12090. Bibcode:2022Heliy...812090S. doi:10.1016/j.heliyon.2022.e12090. PMC 9761728. PMID 36544838.
Shrivastava, Nidhi Krishna; Farand, Abhishek Kumar; Shakarad, Mallikarjun N. (December 2022). "Long-term selection for faster development and early reproduction leads to up-regulation of genes involved in redox homeostasis". Advances in Redox Research. 6 100045. doi:10.1016/j.arres.2022.100045.
Rainey PB, Travisano M (July 1998). "Adaptive radiation in a heterogeneous environment". Nature. 394 (6688): 69–72. Bibcode:1998Natur.394...69R. doi:10.1038/27900. PMID 9665128. S2CID 40896184.
Chua SL, Ding Y, Liu Y, Cai Z, Zhou J, Swarup S, et al. (November 2016). "Reactive oxygen species drive evolution of pro-biofilm variants in pathogens by modulating cyclic-di-GMP levels". Open Biology. 6 (11) 160162. doi:10.1098/rsob.160162. PMC 5133437. PMID 27881736.
Ma Y, Chua SL (2021-11-15). "No collateral antibiotic sensitivity by alternating antibiotic pairs". The Lancet Microbe. 3 (1): e7. doi:10.1016/S2666-5247(21)00270-6. ISSN 2666-5247. PMID 35544116. S2CID 244147577.
LangG, Desai MM (2013-08-29). "Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations". Nature. 500 (7464): 571–574. Bibcode:2013Natur.500..571L. doi:10.1038/nature12344. PMC 3758440. PMID 23873039.
Lenski RE, Rose MR, Simpson SC, Tadler SC (1991-12-01). "Long-Term Experimental Evolution in Escherichia coli. I. Adaptation and Divergence During 2,000 Generations". The American Naturalist. 138 (6): 1315–1341. Bibcode:1991ANat..138.1315L. doi:10.1086/285289. ISSN 0003-0147. S2CID 83996233.
Fox JW, Lenski RE (June 2015). "From Here to Eternity--The Theory and Practice of a Really Long Experiment". PLOS Biology. 13 (6) e1002185. doi:10.1371/journal.pbio.1002185. PMC 4477892. PMID 26102073.
Blount ZD, Borland CZ, Lenski RE (June 2008). "Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli". Proceedings of the National Academy of Sciences of the United States of America. 105 (23): 7899–7906. Bibcode:2008PNAS..105.7899B. doi:10.1073/pnas.0803151105. PMC 2430337. PMID 18524956.
Bussotti, Giovanni; Piel, Laura; Pescher, Pascale; Domagalska, Malgorzata A.; Rajan, K. Shanmugha; Cohen-Chalamish, Smadar; Doniger, Tirza; Hiregange, Disha-Gajanan; Myler, Peter J.; Unger, Ron; Michaeli, Shulamit; Späth, Gerald F. (21 December 2021). "Genome instability drives epistatic adaptation in the human pathogen Leishmania". Proceedings of the National Academy of Sciences. 118 (51) e2113744118. Bibcode:2021PNAS..11813744B. doi:10.1073/pnas.2113744118. ISSN 0027-8424. PMC 8713814. PMID 34903666.
Swallow, John G.; Carter, Patrick A.; Garland, Jr., Theodore (1998). "Artificial Selection for Increased Wheel-Running Behavior in House Mice". Behavior Genetics. 28 (3): 227–237. doi:10.1023/a:1021479331779. PMID 9670598.
Garland, Jr., T.; Kelly, S. A.; Malisch, J. L.; Kolb, E. M.; Hannon, R. M.; Keeney, B. K.; Van Cleave, S. L.; Middleton, K. M. (2011). "How to run far: multiple solutions and sex-specific responses to selective breeding for high voluntary activity levels". Proceedings of the Royal Society B: Biological Sciences. 278 (1705): 574–581. doi:10.1098/rspb.2010.1584. PMC 3025687. PMID 20810439.
Castro, A. A.; Garland, Jr., T.; Ahmed, S.; Holt, N. C. (2022). "Trade-offs in muscle physiology in selectively bred High Runner mice". Journal of Experimental Biology. 225 (23): jeb244083. Bibcode:2022JExpB.225B4083C. doi:10.1242/jeb.244083. PMC 9789404. PMID 36408738.
Meek, T. E.; Lonquich, B. P.; Hannon, R. M.; Garland, Jr., T. (2009). "Endurance capacity of mice selectively bred for high voluntary wheel running". Journal of Experimental Biology. 212 (18): 2908–2917. Bibcode:2009JExpB.212.2908M. doi:10.1242/jeb.028886. PMID 19717672.
Schwartz, N. E.; McNamara, M. P.; Orozco, J. M.; Rashid, J. O.; Thai, A. P.; Garland, Jr., T. (2023). "Selective breeding for high voluntary exercise in mice increases maximal (V̇_O2,max) but not basal metabolic rate". Journal of Experimental Biology. 226 (15): jeb245256. Bibcode:2023JExpB.226B5256S. doi:10.1242/jeb.245256. PMID 37439323.
Keeney BK, Raichlen DA, Meek TH, Wijeratne RS, Middleton KM, Gerdeman GL, Garland T (December 2008). "Differential response to a selective cannabinoid receptor antagonist (SR141716: rimonabant) in female mice from lines selectively bred for high voluntary wheel-running behaviour". Behavioural Pharmacology. 19 (8): 812–820. doi:10.1097/FBP.0b013e32831c3b6b. PMID 19020416. S2CID 16215160.
Rhodes, J. S.; Garland, Jr., T. (2003). "Differential sensitivity to acute administration of Ritalin, apomorphine, SCH 23390, and raclopride in mice selectively bred for hyperactive wheel-running behavior". Psychopharmacology. 167 (3): 242–250. doi:10.1007/s00213-003-1399-9. PMID 12669177.
Sadowska ET, Baliga-Klimczyk K, Chrzaścik KM, Koteja P (2008). "Laboratory model of adaptive radiation: a selection experiment in the bank vole". Physiological and Biochemical Zoology. 81 (5): 627–640. Bibcode:2008PhyBZ..81..627S. doi:10.1086/590164. PMID 18781839. S2CID 20125314.
Sadowska ET, Stawski C, Rudolf A, Dheyongera G, Chrząścik KM, Baliga-Klimczyk K, Koteja P (May 2015). "Evolution of basal metabolic rate in bank voles from a multidirectional selection experiment". Proceedings. Biological Sciences. 282 (1806) 20150025. Bibcode:2015PBioS.28250025S. doi:10.1098/rspb.2015.0025. PMC 4426621. PMID 25876844.
Dheyongera G, Grzebyk K, Rudolf AM, Sadowska ET, Koteja P (April 2016). "The effect of chlorpyrifos on thermogenic capacity of bank voles selected for increased aerobic exercise metabolism". Chemosphere. 149: 383–390. Bibcode:2016Chmsp.149..383D. doi:10.1016/j.chemosphere.2015.12.120. PMID 26878110.
Maiti U, Sadowska ET, ChrzĄścik KM, Koteja P (August 2019). "Experimental evolution of personality traits: open-field exploration in bank voles from a multidirectional selection experiment". Current Zoology. 65 (4): 375–384. doi:10.1093/cz/zoy068. PMC 6688576. PMID 31413710.
Kohl KD, Sadowska ET, Rudolf AM, Dearing MD, Koteja P (2016). "Experimental Evolution on a Wild Mammal Species Results in Modifications of Gut Microbial Communities". Frontiers in Microbiology. 7: 634. doi:10.3389/fmicb.2016.00634. PMC 4854874. PMID 27199960.
Sleight SC, Bartley BA, Lieviant JA, Sauro HM (November 2010). "Designing and engineering evolutionary robust genetic circuits". Journal of Biological Engineering. 4: 12. doi:10.1186/1754-1611-4-12. PMC 2991278. PMID 21040586.
González C, Ray JC, Manhart M, Adams RM, Nevozhay D, Morozov AV, Balázsi G (August 2015). "Stress-response balance drives the evolution of a network module and its host genome". Molecular Systems Biology. 11 (8) 827. doi:10.15252/msb.20156185. PMC 4562500. PMID 26324468.
Kheir Gouda M, Manhart M, Balázsi G (December 2019). "Evolutionary regain of lost gene circuit function". Proceedings of the National Academy of Sciences. 116 (50): 25162–25171. Bibcode:2019PNAS..11625162K. doi:10.1073/pnas.1912257116. PMC 6911209. PMID 31754027.
Farquhar KS, Charlebois DA, Szenk M, Cohen J, Nevozhay D, Balázsi G (June 2019). "Role of network-mediated stochasticity in mammalian drug resistance". Nature Communications. 10 (1) 2766. doi:10.1038/s41467-019-10330-w. PMC 6591227. PMID 31235692.
Lenski, Richard E. (2017). "Convergence and divergence in a long-term experiment with bacteria". The American Naturalist. 190 (S1): S57 – S68. Bibcode:2017ANat..190S..57L. doi:10.1086/691209. PMC 5952963. PMID 28645205.
Jerison, Elizabeth R.; Kryazhimskiy, Sergey; Mitchell, James K.; Bloom, Joshua S.; Kruglyak, Leonid; Desai, Michael M. (2017). "Genetic variation in adaptability does not mean variation in adaptation". eLife. 6 (1): 62–76. doi:10.7554/eLife.27167. PMC 5580887. PMID 28853443.
Schmidlin, K.; Apodaca, S.; Newell, D.; Sastokas, A.; Kinsler, G.; Geiler-Samerotte, K. (2024). "Distinguishing mutants that resist drugs via different mechanisms by examining fitness tradeoffs". eLife. 13 RP94144. doi:10.7554/eLife.94144. PMC 11386965. PMID 39255191.
Good, Benjamin H.; McDonald, Michael J.; Barrick, Jeffrey E.; Lenski, Richard E.; Desai, Michael M. (2017). "The dynamics of molecular evolution over 60,000 generations". Nature. 551 (7678): 45–50. Bibcode:2017Natur.551...45G. doi:10.1038/nature24287. PMC 5788700. PMID 29045390.
Barrett RD, Paccard A, Healy TM, Bergek S, Schulte PM, Schluter D, Rogers SM (January 2011). "Rapid evolution of cold tolerance in stickleback". Proceedings. Biological Sciences. 278 (1703): 233–238. doi:10.1098/rspb.2010.0923. PMC 3013383. PMID 20685715.
Dragosits M, Mattanovich D (July 2013). "Adaptive laboratory evolution -- principles and applications for biotechnology". Microbial Cell Factories. 12 (1): 64. doi:10.1186/1475-2859-12-64. PMC 3716822. PMID 23815749.
Maralingannavar V, Parmar D, Pant T, Gadgil C, Panchagnula V, Gadgil M (May 2017). "CHO Cells adapted to inorganic phosphate limitation show higher growth and higher pyruvate carboxylase flux in phosphate replete conditions". Biotechnology Progress. 33 (3): 749–758. doi:10.1002/btpr.2450. PMID 28220676. S2CID 4048737.
Hyman P (January 2014). "Bacteriophage as instructional organisms in introductory biology labs". Bacteriophage. 4 (1) e27336. doi:10.4161/bact.27336. PMC 3895413. PMID 24478938.
Ratcliff WC, Raney A, Westreich S, Cotner S (2014). "A Novel Laboratory Activity for Teaching about the Evolution of Multicellularity". The American Biology Teacher. 76 (2): 81–87. doi:10.1525/abt.2014.76.2.3. ISSN 0002-7685. S2CID 86079463.
Mikheyev, Alexander S; Arora, Jigyasa (9 September 2015). Using experimental evolution and next-generation sequencing to teach bench and bioinformatic skills (Preprint). doi:10.7287/peerj.preprints.1356v1.
Wang, Zhen; Qi, Xianni; Ren, Xinru; Lin, Yuping; Zeng, Fanli; Wang, Qinhong (February 2025). "Synthetic evolution of Saccharomyces cerevisiae for biomanufacturing: Approaches and applications". mLife. 4 (1): 1–16. doi:10.1002/mlf2.12167. PMC 11868838. PMID 40026576.

harvard.edu (Global: 18^th place; English: 17^th place)

ui.adsabs.harvard.edu

Kawecki, Tadeusz J.; Lenski, Richard E.; Ebert, Dieter; Hollis, Brian; Olivieri, Isabelle; Whitlock, Michael C. (October 2012). "Experimental evolution" (PDF). Trends in Ecology & Evolution. 27 (10): 547–560. Bibcode:2012TEcoE..27..547K. doi:10.1016/j.tree.2012.06.001. PMID 22819306.
Buckling A, Craig Maclean R, Brockhurst MA, Colegrave N (February 2009). "The Beagle in a bottle". Nature. 457 (7231): 824–829. Bibcode:2009Natur.457..824B. doi:10.1038/nature07892. PMID 19212400. S2CID 205216404.
Marden JH, Wolf MR, Weber KE (November 1997). "Aerial performance of Drosophila melanogaster from populations selected for upwind flight ability". The Journal of Experimental Biology. 200 (Pt 21): 2747–2755. Bibcode:1997JExpB.200.2747M. doi:10.1242/jeb.200.21.2747. PMID 9418031.
Ratcliff WC, Denison RF, Borrello M, Travisano M (January 2012). "Experimental evolution of multicellularity". Proceedings of the National Academy of Sciences of the United States of America. 109 (5): 1595–1600. Bibcode:2012PNAS..109.1595R. doi:10.1073/pnas.1115323109. PMC 3277146. PMID 22307617.
Barrick JE, Yu DS, Yoon SH, Jeong H, Oh TK, Schneider D, et al. (October 2009). "Genome evolution and adaptation in a long-term experiment with Escherichia coli". Nature. 461 (7268): 1243–1247. Bibcode:2009Natur.461.1243B. doi:10.1038/nature08480. PMID 19838166. S2CID 4330305.
Heineman RH, Molineux IJ, Bull JJ (August 2005). "Evolutionary robustness of an optimal phenotype: re-evolution of lysis in a bacteriophage deleted for its lysin gene". Journal of Molecular Evolution. 61 (2): 181–191. Bibcode:2005JMolE..61..181H. doi:10.1007/s00239-004-0304-4. PMID 16096681. S2CID 31230414.
Moses AM, Davidson AR (May 2011). "In vitro evolution goes deep". Proceedings of the National Academy of Sciences of the United States of America. 108 (20): 8071–8072. Bibcode:2011PNAS..108.8071M. doi:10.1073/pnas.1104843108. PMC 3100951. PMID 21551096.
Salehi-Ashtiani K, Szostak JW (November 2001). "In vitro evolution suggests multiple origins for the hammerhead ribozyme". Nature. 414 (6859): 82–84. Bibcode:2001Natur.414...82S. doi:10.1038/35102081. PMID 11689947. S2CID 4401483.
Sumper M, Luce R (January 1975). "Evidence for de novo production of self-replicating and environmentally adapted RNA structures by bacteriophage Qbeta replicase". Proceedings of the National Academy of Sciences of the United States of America. 72 (1): 162–166. Bibcode:1975PNAS...72..162S. doi:10.1073/pnas.72.1.162. PMC 432262. PMID 1054493.
Mills DR, Peterson RL, Spiegelman S (July 1967). "An extracellular Darwinian experiment with a self-duplicating nucleic acid molecule". Proceedings of the National Academy of Sciences of the United States of America. 58 (1): 217–224. Bibcode:1967PNAS...58..217M. doi:10.1073/pnas.58.1.217. PMC 335620. PMID 5231602.
Burke MK, Dunham JP, Shahrestani P, Thornton KR, Rose MR, Long AD (September 2010). "Genome-wide analysis of a long-term evolution experiment with Drosophila". Nature. 467 (7315): 587–590. Bibcode:2010Natur.467..587B. doi:10.1038/nature09352. PMID 20844486. S2CID 205222217.
Schlötterer C, Kofler R, Versace E, Tobler R, Franssen SU (May 2015). "Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation". Heredity. 114 (5): 431–440. Bibcode:2015Hered.114..431S. doi:10.1038/hdy.2014.86. PMC 4815507. PMID 25269380.
Zhou D, Xue J, Chen J, Morcillo P, Lambert JD, White KP, Haddad GG (May 2007). "Experimental selection for Drosophila survival in extremely low O(2) environment". PLOS ONE. 2 (5) e490. Bibcode:2007PLoSO...2..490Z. doi:10.1371/journal.pone.0000490. PMC 1871610. PMID 17534440.
Zhou D, Udpa N, Gersten M, Visk DW, Bashir A, Xue J, et al. (February 2011). "Experimental selection of hypoxia-tolerant Drosophila melanogaster". Proceedings of the National Academy of Sciences of the United States of America. 108 (6): 2349–2354. Bibcode:2011PNAS..108.2349Z. doi:10.1073/pnas.1010643108. PMC 3038716. PMID 21262834.
Remolina SC, Chang PL, Leips J, Nuzhdin SV, Hughes KA (November 2012). "Genomic basis of aging and life-history evolution in Drosophila melanogaster". Evolution; International Journal of Organic Evolution. 66 (11): 3390–3403. Bibcode:2012Evolu..66.3390R. doi:10.1111/j.1558-5646.2012.01710.x. PMC 4539122. PMID 23106705.
Shrivastava, Nidhi Krishna; Chauhan, Namita; Shakarad, Mallikarjun N. (December 2022). "Heightened immune surveillance in Drosophila melanogaster populations selected for faster development and extended longevity". Heliyon. 8 (12) e12090. Bibcode:2022Heliy...812090S. doi:10.1016/j.heliyon.2022.e12090. PMC 9761728. PMID 36544838.
Rainey PB, Travisano M (July 1998). "Adaptive radiation in a heterogeneous environment". Nature. 394 (6688): 69–72. Bibcode:1998Natur.394...69R. doi:10.1038/27900. PMID 9665128. S2CID 40896184.
LangG, Desai MM (2013-08-29). "Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations". Nature. 500 (7464): 571–574. Bibcode:2013Natur.500..571L. doi:10.1038/nature12344. PMC 3758440. PMID 23873039.
Lenski RE, Rose MR, Simpson SC, Tadler SC (1991-12-01). "Long-Term Experimental Evolution in Escherichia coli. I. Adaptation and Divergence During 2,000 Generations". The American Naturalist. 138 (6): 1315–1341. Bibcode:1991ANat..138.1315L. doi:10.1086/285289. ISSN 0003-0147. S2CID 83996233.
Blount ZD, Borland CZ, Lenski RE (June 2008). "Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli". Proceedings of the National Academy of Sciences of the United States of America. 105 (23): 7899–7906. Bibcode:2008PNAS..105.7899B. doi:10.1073/pnas.0803151105. PMC 2430337. PMID 18524956.
Bussotti, Giovanni; Piel, Laura; Pescher, Pascale; Domagalska, Malgorzata A.; Rajan, K. Shanmugha; Cohen-Chalamish, Smadar; Doniger, Tirza; Hiregange, Disha-Gajanan; Myler, Peter J.; Unger, Ron; Michaeli, Shulamit; Späth, Gerald F. (21 December 2021). "Genome instability drives epistatic adaptation in the human pathogen Leishmania". Proceedings of the National Academy of Sciences. 118 (51) e2113744118. Bibcode:2021PNAS..11813744B. doi:10.1073/pnas.2113744118. ISSN 0027-8424. PMC 8713814. PMID 34903666.
Castro, A. A.; Garland, Jr., T.; Ahmed, S.; Holt, N. C. (2022). "Trade-offs in muscle physiology in selectively bred High Runner mice". Journal of Experimental Biology. 225 (23): jeb244083. Bibcode:2022JExpB.225B4083C. doi:10.1242/jeb.244083. PMC 9789404. PMID 36408738.
Meek, T. E.; Lonquich, B. P.; Hannon, R. M.; Garland, Jr., T. (2009). "Endurance capacity of mice selectively bred for high voluntary wheel running". Journal of Experimental Biology. 212 (18): 2908–2917. Bibcode:2009JExpB.212.2908M. doi:10.1242/jeb.028886. PMID 19717672.
Schwartz, N. E.; McNamara, M. P.; Orozco, J. M.; Rashid, J. O.; Thai, A. P.; Garland, Jr., T. (2023). "Selective breeding for high voluntary exercise in mice increases maximal (V̇_O2,max) but not basal metabolic rate". Journal of Experimental Biology. 226 (15): jeb245256. Bibcode:2023JExpB.226B5256S. doi:10.1242/jeb.245256. PMID 37439323.
Sadowska ET, Baliga-Klimczyk K, Chrzaścik KM, Koteja P (2008). "Laboratory model of adaptive radiation: a selection experiment in the bank vole". Physiological and Biochemical Zoology. 81 (5): 627–640. Bibcode:2008PhyBZ..81..627S. doi:10.1086/590164. PMID 18781839. S2CID 20125314.
Sadowska ET, Stawski C, Rudolf A, Dheyongera G, Chrząścik KM, Baliga-Klimczyk K, Koteja P (May 2015). "Evolution of basal metabolic rate in bank voles from a multidirectional selection experiment". Proceedings. Biological Sciences. 282 (1806) 20150025. Bibcode:2015PBioS.28250025S. doi:10.1098/rspb.2015.0025. PMC 4426621. PMID 25876844.
Dheyongera G, Grzebyk K, Rudolf AM, Sadowska ET, Koteja P (April 2016). "The effect of chlorpyrifos on thermogenic capacity of bank voles selected for increased aerobic exercise metabolism". Chemosphere. 149: 383–390. Bibcode:2016Chmsp.149..383D. doi:10.1016/j.chemosphere.2015.12.120. PMID 26878110.
Kheir Gouda M, Manhart M, Balázsi G (December 2019). "Evolutionary regain of lost gene circuit function". Proceedings of the National Academy of Sciences. 116 (50): 25162–25171. Bibcode:2019PNAS..11625162K. doi:10.1073/pnas.1912257116. PMC 6911209. PMID 31754027.
Lenski, Richard E. (2017). "Convergence and divergence in a long-term experiment with bacteria". The American Naturalist. 190 (S1): S57 – S68. Bibcode:2017ANat..190S..57L. doi:10.1086/691209. PMC 5952963. PMID 28645205.
Good, Benjamin H.; McDonald, Michael J.; Barrick, Jeffrey E.; Lenski, Richard E.; Desai, Michael M. (2017). "The dynamics of molecular evolution over 60,000 generations". Nature. 551 (7678): 45–50. Bibcode:2017Natur.551...45G. doi:10.1038/nature24287. PMC 5788700. PMID 29045390.

jstor.org (Global: 26^th place; English: 20^th place)

Trut, Lyudmila (1999). "Early Canid Domestication: The Farm-Fox Experiment". American Scientist. 87 (2): 160–169. doi:10.1511/1999.2.160. JSTOR 27857815.
Dobzhansky T, Pavlovsky O (1957). "An experimental study of interaction between genetic drift and natural selection". Evolution. 11 (3): 311–319. doi:10.2307/2405795. JSTOR 2405795.
Rose MR (May 1984). "Artificial Selection on a Fitness-Component in Drosophila Melanogaster". Evolution; International Journal of Organic Evolution. 38 (3): 516–526. doi:10.2307/2408701. JSTOR 2408701. PMID 28555975.

msu.edu (Global: 1,844^th place; English: 1,231^st place)

myxo.css.msu.edu

Lenski RE. "E. coli Long-term Experimental Evolution Project Site". Michigan State University. Archived from the original on 2017-07-27. Retrieved 2004-07-08.

nature.com (Global: 234^th place; English: 397^th place)

"Experimental Evolution". Nature.

ncse.ngo (Global: low place; English: low place)

Zimmer C (2011). "Darwin Under the Microscope: Witnessing Evolution in Microbes" (PDF). In Losos J (ed.). In the Light of Evolution: Essays from the Laboratory and Field. W. H. Freeman. pp. 42–43. ISBN 978-0-9815194-9-4.

nih.gov (Global: 4^th place; English: 4^th place)

pubmed.ncbi.nlm.nih.gov

Long A, Liti G, Luptak A, Tenaillon O (October 2015). "Elucidating the molecular architecture of adaptation via evolve and resequence experiments". Nature Reviews. Genetics. 16 (10): 567–582. doi:10.1038/nrg3937. PMC 4733663. PMID 26347030.
Kawecki, Tadeusz J.; Lenski, Richard E.; Ebert, Dieter; Hollis, Brian; Olivieri, Isabelle; Whitlock, Michael C. (October 2012). "Experimental evolution" (PDF). Trends in Ecology & Evolution. 27 (10): 547–560. Bibcode:2012TEcoE..27..547K. doi:10.1016/j.tree.2012.06.001. PMID 22819306.
Buckling A, Craig Maclean R, Brockhurst MA, Colegrave N (February 2009). "The Beagle in a bottle". Nature. 457 (7231): 824–829. Bibcode:2009Natur.457..824B. doi:10.1038/nature07892. PMID 19212400. S2CID 205216404.
Elena SF, Lenski RE (June 2003). "Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation". Nature Reviews. Genetics. 4 (6): 457–469. doi:10.1038/nrg1088. PMID 12776215. S2CID 209727.
Reznick DN, Shaw FH, Rodd FH, Shaw RG (March 1997). "Evaluation of the Rate of Evolution in Natural Populations of Guppies (Poecilia reticulata)". Science. 275 (5308): 1934–1937. doi:10.1126/science.275.5308.1934. PMID 9072971. S2CID 18480502.
Barrick JE, Lenski RE (December 2013). "Genome dynamics during experimental evolution". Nature Reviews. Genetics. 14 (12): 827–839. doi:10.1038/nrg3564. PMC 4239992. PMID 24166031.
Jha AR, Miles CM, Lippert NR, Brown CD, White KP, Kreitman M (October 2015). "Whole-Genome Resequencing of Experimental Populations Reveals Polygenic Basis of Egg-Size Variation in Drosophila melanogaster". Molecular Biology and Evolution. 32 (10): 2616–2632. doi:10.1093/molbev/msv136. PMC 4576704. PMID 26044351.
Turner TL, Stewart AD, Fields AT, Rice WR, Tarone AM (March 2011). "Population-based resequencing of experimentally evolved populations reveals the genetic basis of body size variation in Drosophila melanogaster". PLOS Genetics. 7 (3) e1001336. doi:10.1371/journal.pgen.1001336. PMC 3060078. PMID 21437274.
Haas JW (January 2000). "The Reverend Dr William Henry Dallinger, F.R.S. (1839-1909)". Notes and Records of the Royal Society of London. 54 (1): 53–65. doi:10.1098/rsnr.2000.0096. PMID 11624308. S2CID 145758182.
Marden JH, Wolf MR, Weber KE (November 1997). "Aerial performance of Drosophila melanogaster from populations selected for upwind flight ability". The Journal of Experimental Biology. 200 (Pt 21): 2747–2755. Bibcode:1997JExpB.200.2747M. doi:10.1242/jeb.200.21.2747. PMID 9418031.
Ratcliff WC, Denison RF, Borrello M, Travisano M (January 2012). "Experimental evolution of multicellularity". Proceedings of the National Academy of Sciences of the United States of America. 109 (5): 1595–1600. Bibcode:2012PNAS..109.1595R. doi:10.1073/pnas.1115323109. PMC 3277146. PMID 22307617.
Barrick JE, Yu DS, Yoon SH, Jeong H, Oh TK, Schneider D, et al. (October 2009). "Genome evolution and adaptation in a long-term experiment with Escherichia coli". Nature. 461 (7268): 1243–1247. Bibcode:2009Natur.461.1243B. doi:10.1038/nature08480. PMID 19838166. S2CID 4330305.
Heineman RH, Molineux IJ, Bull JJ (August 2005). "Evolutionary robustness of an optimal phenotype: re-evolution of lysis in a bacteriophage deleted for its lysin gene". Journal of Molecular Evolution. 61 (2): 181–191. Bibcode:2005JMolE..61..181H. doi:10.1007/s00239-004-0304-4. PMID 16096681. S2CID 31230414.
Bloom JD, Arnold FH (June 2009). "In the light of directed evolution: pathways of adaptive protein evolution". Proceedings of the National Academy of Sciences of the United States of America. 106 (Suppl 1): 9995–10000. doi:10.1073/pnas.0901522106. PMC 2702793. PMID 19528653.
Moses AM, Davidson AR (May 2011). "In vitro evolution goes deep". Proceedings of the National Academy of Sciences of the United States of America. 108 (20): 8071–8072. Bibcode:2011PNAS..108.8071M. doi:10.1073/pnas.1104843108. PMC 3100951. PMID 21551096.
Salehi-Ashtiani K, Szostak JW (November 2001). "In vitro evolution suggests multiple origins for the hammerhead ribozyme". Nature. 414 (6859): 82–84. Bibcode:2001Natur.414...82S. doi:10.1038/35102081. PMID 11689947. S2CID 4401483.
Sumper M, Luce R (January 1975). "Evidence for de novo production of self-replicating and environmentally adapted RNA structures by bacteriophage Qbeta replicase". Proceedings of the National Academy of Sciences of the United States of America. 72 (1): 162–166. Bibcode:1975PNAS...72..162S. doi:10.1073/pnas.72.1.162. PMC 432262. PMID 1054493.
Mills DR, Peterson RL, Spiegelman S (July 1967). "An extracellular Darwinian experiment with a self-duplicating nucleic acid molecule". Proceedings of the National Academy of Sciences of the United States of America. 58 (1): 217–224. Bibcode:1967PNAS...58..217M. doi:10.1073/pnas.58.1.217. PMC 335620. PMID 5231602.
Rose MR (May 1984). "Artificial Selection on a Fitness-Component in Drosophila Melanogaster". Evolution; International Journal of Organic Evolution. 38 (3): 516–526. doi:10.2307/2408701. JSTOR 2408701. PMID 28555975.
Burke MK, Dunham JP, Shahrestani P, Thornton KR, Rose MR, Long AD (September 2010). "Genome-wide analysis of a long-term evolution experiment with Drosophila". Nature. 467 (7315): 587–590. Bibcode:2010Natur.467..587B. doi:10.1038/nature09352. PMID 20844486. S2CID 205222217.
Schlötterer C, Tobler R, Kofler R, Nolte V (November 2014). "Sequencing pools of individuals - mining genome-wide polymorphism data without big funding". Nature Reviews. Genetics. 15 (11): 749–763. doi:10.1038/nrg3803. PMID 25246196. S2CID 35827109.
Schlötterer C, Kofler R, Versace E, Tobler R, Franssen SU (May 2015). "Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation". Heredity. 114 (5): 431–440. Bibcode:2015Hered.114..431S. doi:10.1038/hdy.2014.86. PMC 4815507. PMID 25269380.
Zhou D, Xue J, Chen J, Morcillo P, Lambert JD, White KP, Haddad GG (May 2007). "Experimental selection for Drosophila survival in extremely low O(2) environment". PLOS ONE. 2 (5) e490. Bibcode:2007PLoSO...2..490Z. doi:10.1371/journal.pone.0000490. PMC 1871610. PMID 17534440.
Zhou D, Udpa N, Gersten M, Visk DW, Bashir A, Xue J, et al. (February 2011). "Experimental selection of hypoxia-tolerant Drosophila melanogaster". Proceedings of the National Academy of Sciences of the United States of America. 108 (6): 2349–2354. Bibcode:2011PNAS..108.2349Z. doi:10.1073/pnas.1010643108. PMC 3038716. PMID 21262834.
Remolina SC, Chang PL, Leips J, Nuzhdin SV, Hughes KA (November 2012). "Genomic basis of aging and life-history evolution in Drosophila melanogaster". Evolution; International Journal of Organic Evolution. 66 (11): 3390–3403. Bibcode:2012Evolu..66.3390R. doi:10.1111/j.1558-5646.2012.01710.x. PMC 4539122. PMID 23106705.
Shrivastava, Nidhi Krishna; Shakarad, Mallikarjun N. (May 2023). "Correlated responses in basal immune function in response to selection for fast development in Drosophila melanogaster". Journal of Evolutionary Biology. 36 (5): 816–828. doi:10.1111/jeb.14176. PMID 37073855.
Shrivastava, Nidhi Krishna; Chauhan, Namita; Shakarad, Mallikarjun N. (December 2022). "Heightened immune surveillance in Drosophila melanogaster populations selected for faster development and extended longevity". Heliyon. 8 (12) e12090. Bibcode:2022Heliy...812090S. doi:10.1016/j.heliyon.2022.e12090. PMC 9761728. PMID 36544838.
Rainey PB, Travisano M (July 1998). "Adaptive radiation in a heterogeneous environment". Nature. 394 (6688): 69–72. Bibcode:1998Natur.394...69R. doi:10.1038/27900. PMID 9665128. S2CID 40896184.
Chua SL, Ding Y, Liu Y, Cai Z, Zhou J, Swarup S, et al. (November 2016). "Reactive oxygen species drive evolution of pro-biofilm variants in pathogens by modulating cyclic-di-GMP levels". Open Biology. 6 (11) 160162. doi:10.1098/rsob.160162. PMC 5133437. PMID 27881736.
Ma Y, Chua SL (2021-11-15). "No collateral antibiotic sensitivity by alternating antibiotic pairs". The Lancet Microbe. 3 (1): e7. doi:10.1016/S2666-5247(21)00270-6. ISSN 2666-5247. PMID 35544116. S2CID 244147577.
LangG, Desai MM (2013-08-29). "Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations". Nature. 500 (7464): 571–574. Bibcode:2013Natur.500..571L. doi:10.1038/nature12344. PMC 3758440. PMID 23873039.
Fox JW, Lenski RE (June 2015). "From Here to Eternity--The Theory and Practice of a Really Long Experiment". PLOS Biology. 13 (6) e1002185. doi:10.1371/journal.pbio.1002185. PMC 4477892. PMID 26102073.
Blount ZD, Borland CZ, Lenski RE (June 2008). "Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli". Proceedings of the National Academy of Sciences of the United States of America. 105 (23): 7899–7906. Bibcode:2008PNAS..105.7899B. doi:10.1073/pnas.0803151105. PMC 2430337. PMID 18524956.
Bussotti, Giovanni; Piel, Laura; Pescher, Pascale; Domagalska, Malgorzata A.; Rajan, K. Shanmugha; Cohen-Chalamish, Smadar; Doniger, Tirza; Hiregange, Disha-Gajanan; Myler, Peter J.; Unger, Ron; Michaeli, Shulamit; Späth, Gerald F. (21 December 2021). "Genome instability drives epistatic adaptation in the human pathogen Leishmania". Proceedings of the National Academy of Sciences. 118 (51) e2113744118. Bibcode:2021PNAS..11813744B. doi:10.1073/pnas.2113744118. ISSN 0027-8424. PMC 8713814. PMID 34903666.
Swallow, John G.; Carter, Patrick A.; Garland, Jr., Theodore (1998). "Artificial Selection for Increased Wheel-Running Behavior in House Mice". Behavior Genetics. 28 (3): 227–237. doi:10.1023/a:1021479331779. PMID 9670598.
Garland, Jr., T.; Kelly, S. A.; Malisch, J. L.; Kolb, E. M.; Hannon, R. M.; Keeney, B. K.; Van Cleave, S. L.; Middleton, K. M. (2011). "How to run far: multiple solutions and sex-specific responses to selective breeding for high voluntary activity levels". Proceedings of the Royal Society B: Biological Sciences. 278 (1705): 574–581. doi:10.1098/rspb.2010.1584. PMC 3025687. PMID 20810439.
Castro, A. A.; Garland, Jr., T.; Ahmed, S.; Holt, N. C. (2022). "Trade-offs in muscle physiology in selectively bred High Runner mice". Journal of Experimental Biology. 225 (23): jeb244083. Bibcode:2022JExpB.225B4083C. doi:10.1242/jeb.244083. PMC 9789404. PMID 36408738.
Meek, T. E.; Lonquich, B. P.; Hannon, R. M.; Garland, Jr., T. (2009). "Endurance capacity of mice selectively bred for high voluntary wheel running". Journal of Experimental Biology. 212 (18): 2908–2917. Bibcode:2009JExpB.212.2908M. doi:10.1242/jeb.028886. PMID 19717672.
Schwartz, N. E.; McNamara, M. P.; Orozco, J. M.; Rashid, J. O.; Thai, A. P.; Garland, Jr., T. (2023). "Selective breeding for high voluntary exercise in mice increases maximal (V̇_O2,max) but not basal metabolic rate". Journal of Experimental Biology. 226 (15): jeb245256. Bibcode:2023JExpB.226B5256S. doi:10.1242/jeb.245256. PMID 37439323.
Keeney BK, Raichlen DA, Meek TH, Wijeratne RS, Middleton KM, Gerdeman GL, Garland T (December 2008). "Differential response to a selective cannabinoid receptor antagonist (SR141716: rimonabant) in female mice from lines selectively bred for high voluntary wheel-running behaviour". Behavioural Pharmacology. 19 (8): 812–820. doi:10.1097/FBP.0b013e32831c3b6b. PMID 19020416. S2CID 16215160.
Rhodes, J. S.; Garland, Jr., T. (2003). "Differential sensitivity to acute administration of Ritalin, apomorphine, SCH 23390, and raclopride in mice selectively bred for hyperactive wheel-running behavior". Psychopharmacology. 167 (3): 242–250. doi:10.1007/s00213-003-1399-9. PMID 12669177.
Sadowska ET, Baliga-Klimczyk K, Chrzaścik KM, Koteja P (2008). "Laboratory model of adaptive radiation: a selection experiment in the bank vole". Physiological and Biochemical Zoology. 81 (5): 627–640. Bibcode:2008PhyBZ..81..627S. doi:10.1086/590164. PMID 18781839. S2CID 20125314.
Sadowska ET, Stawski C, Rudolf A, Dheyongera G, Chrząścik KM, Baliga-Klimczyk K, Koteja P (May 2015). "Evolution of basal metabolic rate in bank voles from a multidirectional selection experiment". Proceedings. Biological Sciences. 282 (1806) 20150025. Bibcode:2015PBioS.28250025S. doi:10.1098/rspb.2015.0025. PMC 4426621. PMID 25876844.
Dheyongera G, Grzebyk K, Rudolf AM, Sadowska ET, Koteja P (April 2016). "The effect of chlorpyrifos on thermogenic capacity of bank voles selected for increased aerobic exercise metabolism". Chemosphere. 149: 383–390. Bibcode:2016Chmsp.149..383D. doi:10.1016/j.chemosphere.2015.12.120. PMID 26878110.
Maiti U, Sadowska ET, ChrzĄścik KM, Koteja P (August 2019). "Experimental evolution of personality traits: open-field exploration in bank voles from a multidirectional selection experiment". Current Zoology. 65 (4): 375–384. doi:10.1093/cz/zoy068. PMC 6688576. PMID 31413710.
Kohl KD, Sadowska ET, Rudolf AM, Dearing MD, Koteja P (2016). "Experimental Evolution on a Wild Mammal Species Results in Modifications of Gut Microbial Communities". Frontiers in Microbiology. 7: 634. doi:10.3389/fmicb.2016.00634. PMC 4854874. PMID 27199960.
Sleight SC, Bartley BA, Lieviant JA, Sauro HM (November 2010). "Designing and engineering evolutionary robust genetic circuits". Journal of Biological Engineering. 4: 12. doi:10.1186/1754-1611-4-12. PMC 2991278. PMID 21040586.
González C, Ray JC, Manhart M, Adams RM, Nevozhay D, Morozov AV, Balázsi G (August 2015). "Stress-response balance drives the evolution of a network module and its host genome". Molecular Systems Biology. 11 (8) 827. doi:10.15252/msb.20156185. PMC 4562500. PMID 26324468.
Kheir Gouda M, Manhart M, Balázsi G (December 2019). "Evolutionary regain of lost gene circuit function". Proceedings of the National Academy of Sciences. 116 (50): 25162–25171. Bibcode:2019PNAS..11625162K. doi:10.1073/pnas.1912257116. PMC 6911209. PMID 31754027.
Farquhar KS, Charlebois DA, Szenk M, Cohen J, Nevozhay D, Balázsi G (June 2019). "Role of network-mediated stochasticity in mammalian drug resistance". Nature Communications. 10 (1) 2766. doi:10.1038/s41467-019-10330-w. PMC 6591227. PMID 31235692.
Lenski, Richard E. (2017). "Convergence and divergence in a long-term experiment with bacteria". The American Naturalist. 190 (S1): S57 – S68. Bibcode:2017ANat..190S..57L. doi:10.1086/691209. PMC 5952963. PMID 28645205.
Jerison, Elizabeth R.; Kryazhimskiy, Sergey; Mitchell, James K.; Bloom, Joshua S.; Kruglyak, Leonid; Desai, Michael M. (2017). "Genetic variation in adaptability does not mean variation in adaptation". eLife. 6 (1): 62–76. doi:10.7554/eLife.27167. PMC 5580887. PMID 28853443.
Schmidlin, K.; Apodaca, S.; Newell, D.; Sastokas, A.; Kinsler, G.; Geiler-Samerotte, K. (2024). "Distinguishing mutants that resist drugs via different mechanisms by examining fitness tradeoffs". eLife. 13 RP94144. doi:10.7554/eLife.94144. PMC 11386965. PMID 39255191.
Good, Benjamin H.; McDonald, Michael J.; Barrick, Jeffrey E.; Lenski, Richard E.; Desai, Michael M. (2017). "The dynamics of molecular evolution over 60,000 generations". Nature. 551 (7678): 45–50. Bibcode:2017Natur.551...45G. doi:10.1038/nature24287. PMC 5788700. PMID 29045390.
Barrett RD, Paccard A, Healy TM, Bergek S, Schulte PM, Schluter D, Rogers SM (January 2011). "Rapid evolution of cold tolerance in stickleback". Proceedings. Biological Sciences. 278 (1703): 233–238. doi:10.1098/rspb.2010.0923. PMC 3013383. PMID 20685715.
Dragosits M, Mattanovich D (July 2013). "Adaptive laboratory evolution -- principles and applications for biotechnology". Microbial Cell Factories. 12 (1): 64. doi:10.1186/1475-2859-12-64. PMC 3716822. PMID 23815749.
Maralingannavar V, Parmar D, Pant T, Gadgil C, Panchagnula V, Gadgil M (May 2017). "CHO Cells adapted to inorganic phosphate limitation show higher growth and higher pyruvate carboxylase flux in phosphate replete conditions". Biotechnology Progress. 33 (3): 749–758. doi:10.1002/btpr.2450. PMID 28220676. S2CID 4048737.
Hyman P (January 2014). "Bacteriophage as instructional organisms in introductory biology labs". Bacteriophage. 4 (1) e27336. doi:10.4161/bact.27336. PMC 3895413. PMID 24478938.
Wang, Zhen; Qi, Xianni; Ren, Xinru; Lin, Yuping; Zeng, Fanli; Wang, Qinhong (February 2025). "Synthetic evolution of Saccharomyces cerevisiae for biomanufacturing: Approaches and applications". mLife. 4 (1): 1–16. doi:10.1002/mlf2.12167. PMC 11868838. PMID 40026576.

ncbi.nlm.nih.gov

Long A, Liti G, Luptak A, Tenaillon O (October 2015). "Elucidating the molecular architecture of adaptation via evolve and resequence experiments". Nature Reviews. Genetics. 16 (10): 567–582. doi:10.1038/nrg3937. PMC 4733663. PMID 26347030.
Barrick JE, Lenski RE (December 2013). "Genome dynamics during experimental evolution". Nature Reviews. Genetics. 14 (12): 827–839. doi:10.1038/nrg3564. PMC 4239992. PMID 24166031.
Jha AR, Miles CM, Lippert NR, Brown CD, White KP, Kreitman M (October 2015). "Whole-Genome Resequencing of Experimental Populations Reveals Polygenic Basis of Egg-Size Variation in Drosophila melanogaster". Molecular Biology and Evolution. 32 (10): 2616–2632. doi:10.1093/molbev/msv136. PMC 4576704. PMID 26044351.
Turner TL, Stewart AD, Fields AT, Rice WR, Tarone AM (March 2011). "Population-based resequencing of experimentally evolved populations reveals the genetic basis of body size variation in Drosophila melanogaster". PLOS Genetics. 7 (3) e1001336. doi:10.1371/journal.pgen.1001336. PMC 3060078. PMID 21437274.
Ratcliff WC, Denison RF, Borrello M, Travisano M (January 2012). "Experimental evolution of multicellularity". Proceedings of the National Academy of Sciences of the United States of America. 109 (5): 1595–1600. Bibcode:2012PNAS..109.1595R. doi:10.1073/pnas.1115323109. PMC 3277146. PMID 22307617.
Bloom JD, Arnold FH (June 2009). "In the light of directed evolution: pathways of adaptive protein evolution". Proceedings of the National Academy of Sciences of the United States of America. 106 (Suppl 1): 9995–10000. doi:10.1073/pnas.0901522106. PMC 2702793. PMID 19528653.
Moses AM, Davidson AR (May 2011). "In vitro evolution goes deep". Proceedings of the National Academy of Sciences of the United States of America. 108 (20): 8071–8072. Bibcode:2011PNAS..108.8071M. doi:10.1073/pnas.1104843108. PMC 3100951. PMID 21551096.
Sumper M, Luce R (January 1975). "Evidence for de novo production of self-replicating and environmentally adapted RNA structures by bacteriophage Qbeta replicase". Proceedings of the National Academy of Sciences of the United States of America. 72 (1): 162–166. Bibcode:1975PNAS...72..162S. doi:10.1073/pnas.72.1.162. PMC 432262. PMID 1054493.
Mills DR, Peterson RL, Spiegelman S (July 1967). "An extracellular Darwinian experiment with a self-duplicating nucleic acid molecule". Proceedings of the National Academy of Sciences of the United States of America. 58 (1): 217–224. Bibcode:1967PNAS...58..217M. doi:10.1073/pnas.58.1.217. PMC 335620. PMID 5231602.
Schlötterer C, Kofler R, Versace E, Tobler R, Franssen SU (May 2015). "Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation". Heredity. 114 (5): 431–440. Bibcode:2015Hered.114..431S. doi:10.1038/hdy.2014.86. PMC 4815507. PMID 25269380.
Zhou D, Xue J, Chen J, Morcillo P, Lambert JD, White KP, Haddad GG (May 2007). "Experimental selection for Drosophila survival in extremely low O(2) environment". PLOS ONE. 2 (5) e490. Bibcode:2007PLoSO...2..490Z. doi:10.1371/journal.pone.0000490. PMC 1871610. PMID 17534440.
Zhou D, Udpa N, Gersten M, Visk DW, Bashir A, Xue J, et al. (February 2011). "Experimental selection of hypoxia-tolerant Drosophila melanogaster". Proceedings of the National Academy of Sciences of the United States of America. 108 (6): 2349–2354. Bibcode:2011PNAS..108.2349Z. doi:10.1073/pnas.1010643108. PMC 3038716. PMID 21262834.
Remolina SC, Chang PL, Leips J, Nuzhdin SV, Hughes KA (November 2012). "Genomic basis of aging and life-history evolution in Drosophila melanogaster". Evolution; International Journal of Organic Evolution. 66 (11): 3390–3403. Bibcode:2012Evolu..66.3390R. doi:10.1111/j.1558-5646.2012.01710.x. PMC 4539122. PMID 23106705.
Shrivastava, Nidhi Krishna; Chauhan, Namita; Shakarad, Mallikarjun N. (December 2022). "Heightened immune surveillance in Drosophila melanogaster populations selected for faster development and extended longevity". Heliyon. 8 (12) e12090. Bibcode:2022Heliy...812090S. doi:10.1016/j.heliyon.2022.e12090. PMC 9761728. PMID 36544838.
Chua SL, Ding Y, Liu Y, Cai Z, Zhou J, Swarup S, et al. (November 2016). "Reactive oxygen species drive evolution of pro-biofilm variants in pathogens by modulating cyclic-di-GMP levels". Open Biology. 6 (11) 160162. doi:10.1098/rsob.160162. PMC 5133437. PMID 27881736.
LangG, Desai MM (2013-08-29). "Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations". Nature. 500 (7464): 571–574. Bibcode:2013Natur.500..571L. doi:10.1038/nature12344. PMC 3758440. PMID 23873039.
Fox JW, Lenski RE (June 2015). "From Here to Eternity--The Theory and Practice of a Really Long Experiment". PLOS Biology. 13 (6) e1002185. doi:10.1371/journal.pbio.1002185. PMC 4477892. PMID 26102073.
Blount ZD, Borland CZ, Lenski RE (June 2008). "Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli". Proceedings of the National Academy of Sciences of the United States of America. 105 (23): 7899–7906. Bibcode:2008PNAS..105.7899B. doi:10.1073/pnas.0803151105. PMC 2430337. PMID 18524956.
Bussotti, Giovanni; Piel, Laura; Pescher, Pascale; Domagalska, Malgorzata A.; Rajan, K. Shanmugha; Cohen-Chalamish, Smadar; Doniger, Tirza; Hiregange, Disha-Gajanan; Myler, Peter J.; Unger, Ron; Michaeli, Shulamit; Späth, Gerald F. (21 December 2021). "Genome instability drives epistatic adaptation in the human pathogen Leishmania". Proceedings of the National Academy of Sciences. 118 (51) e2113744118. Bibcode:2021PNAS..11813744B. doi:10.1073/pnas.2113744118. ISSN 0027-8424. PMC 8713814. PMID 34903666.
Garland, Jr., T.; Kelly, S. A.; Malisch, J. L.; Kolb, E. M.; Hannon, R. M.; Keeney, B. K.; Van Cleave, S. L.; Middleton, K. M. (2011). "How to run far: multiple solutions and sex-specific responses to selective breeding for high voluntary activity levels". Proceedings of the Royal Society B: Biological Sciences. 278 (1705): 574–581. doi:10.1098/rspb.2010.1584. PMC 3025687. PMID 20810439.
Castro, A. A.; Garland, Jr., T.; Ahmed, S.; Holt, N. C. (2022). "Trade-offs in muscle physiology in selectively bred High Runner mice". Journal of Experimental Biology. 225 (23): jeb244083. Bibcode:2022JExpB.225B4083C. doi:10.1242/jeb.244083. PMC 9789404. PMID 36408738.
Sadowska ET, Stawski C, Rudolf A, Dheyongera G, Chrząścik KM, Baliga-Klimczyk K, Koteja P (May 2015). "Evolution of basal metabolic rate in bank voles from a multidirectional selection experiment". Proceedings. Biological Sciences. 282 (1806) 20150025. Bibcode:2015PBioS.28250025S. doi:10.1098/rspb.2015.0025. PMC 4426621. PMID 25876844.
Maiti U, Sadowska ET, ChrzĄścik KM, Koteja P (August 2019). "Experimental evolution of personality traits: open-field exploration in bank voles from a multidirectional selection experiment". Current Zoology. 65 (4): 375–384. doi:10.1093/cz/zoy068. PMC 6688576. PMID 31413710.
Kohl KD, Sadowska ET, Rudolf AM, Dearing MD, Koteja P (2016). "Experimental Evolution on a Wild Mammal Species Results in Modifications of Gut Microbial Communities". Frontiers in Microbiology. 7: 634. doi:10.3389/fmicb.2016.00634. PMC 4854874. PMID 27199960.
Sleight SC, Bartley BA, Lieviant JA, Sauro HM (November 2010). "Designing and engineering evolutionary robust genetic circuits". Journal of Biological Engineering. 4: 12. doi:10.1186/1754-1611-4-12. PMC 2991278. PMID 21040586.
González C, Ray JC, Manhart M, Adams RM, Nevozhay D, Morozov AV, Balázsi G (August 2015). "Stress-response balance drives the evolution of a network module and its host genome". Molecular Systems Biology. 11 (8) 827. doi:10.15252/msb.20156185. PMC 4562500. PMID 26324468.
Kheir Gouda M, Manhart M, Balázsi G (December 2019). "Evolutionary regain of lost gene circuit function". Proceedings of the National Academy of Sciences. 116 (50): 25162–25171. Bibcode:2019PNAS..11625162K. doi:10.1073/pnas.1912257116. PMC 6911209. PMID 31754027.
Farquhar KS, Charlebois DA, Szenk M, Cohen J, Nevozhay D, Balázsi G (June 2019). "Role of network-mediated stochasticity in mammalian drug resistance". Nature Communications. 10 (1) 2766. doi:10.1038/s41467-019-10330-w. PMC 6591227. PMID 31235692.
Lenski, Richard E. (2017). "Convergence and divergence in a long-term experiment with bacteria". The American Naturalist. 190 (S1): S57 – S68. Bibcode:2017ANat..190S..57L. doi:10.1086/691209. PMC 5952963. PMID 28645205.
Jerison, Elizabeth R.; Kryazhimskiy, Sergey; Mitchell, James K.; Bloom, Joshua S.; Kruglyak, Leonid; Desai, Michael M. (2017). "Genetic variation in adaptability does not mean variation in adaptation". eLife. 6 (1): 62–76. doi:10.7554/eLife.27167. PMC 5580887. PMID 28853443.
Schmidlin, K.; Apodaca, S.; Newell, D.; Sastokas, A.; Kinsler, G.; Geiler-Samerotte, K. (2024). "Distinguishing mutants that resist drugs via different mechanisms by examining fitness tradeoffs". eLife. 13 RP94144. doi:10.7554/eLife.94144. PMC 11386965. PMID 39255191.
Good, Benjamin H.; McDonald, Michael J.; Barrick, Jeffrey E.; Lenski, Richard E.; Desai, Michael M. (2017). "The dynamics of molecular evolution over 60,000 generations". Nature. 551 (7678): 45–50. Bibcode:2017Natur.551...45G. doi:10.1038/nature24287. PMC 5788700. PMID 29045390.
Barrett RD, Paccard A, Healy TM, Bergek S, Schulte PM, Schluter D, Rogers SM (January 2011). "Rapid evolution of cold tolerance in stickleback". Proceedings. Biological Sciences. 278 (1703): 233–238. doi:10.1098/rspb.2010.0923. PMC 3013383. PMID 20685715.
Dragosits M, Mattanovich D (July 2013). "Adaptive laboratory evolution -- principles and applications for biotechnology". Microbial Cell Factories. 12 (1): 64. doi:10.1186/1475-2859-12-64. PMC 3716822. PMID 23815749.
Hyman P (January 2014). "Bacteriophage as instructional organisms in introductory biology labs". Bacteriophage. 4 (1) e27336. doi:10.4161/bact.27336. PMC 3895413. PMID 24478938.
Wang, Zhen; Qi, Xianni; Ren, Xinru; Lin, Yuping; Zeng, Fanli; Wang, Qinhong (February 2025). "Synthetic evolution of Saccharomyces cerevisiae for biomanufacturing: Approaches and applications". mLife. 4 (1): 1–16. doi:10.1002/mlf2.12167. PMC 11868838. PMID 40026576.

semanticscholar.org (Global: 11^th place; English: 8^th place)

api.semanticscholar.org

Buckling A, Craig Maclean R, Brockhurst MA, Colegrave N (February 2009). "The Beagle in a bottle". Nature. 457 (7231): 824–829. Bibcode:2009Natur.457..824B. doi:10.1038/nature07892. PMID 19212400. S2CID 205216404.
Elena SF, Lenski RE (June 2003). "Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation". Nature Reviews. Genetics. 4 (6): 457–469. doi:10.1038/nrg1088. PMID 12776215. S2CID 209727.
Reznick DN, Shaw FH, Rodd FH, Shaw RG (March 1997). "Evaluation of the Rate of Evolution in Natural Populations of Guppies (Poecilia reticulata)". Science. 275 (5308): 1934–1937. doi:10.1126/science.275.5308.1934. PMID 9072971. S2CID 18480502.
Haas JW (January 2000). "The Reverend Dr William Henry Dallinger, F.R.S. (1839-1909)". Notes and Records of the Royal Society of London. 54 (1): 53–65. doi:10.1098/rsnr.2000.0096. PMID 11624308. S2CID 145758182.
Barrick JE, Yu DS, Yoon SH, Jeong H, Oh TK, Schneider D, et al. (October 2009). "Genome evolution and adaptation in a long-term experiment with Escherichia coli". Nature. 461 (7268): 1243–1247. Bibcode:2009Natur.461.1243B. doi:10.1038/nature08480. PMID 19838166. S2CID 4330305.
Heineman RH, Molineux IJ, Bull JJ (August 2005). "Evolutionary robustness of an optimal phenotype: re-evolution of lysis in a bacteriophage deleted for its lysin gene". Journal of Molecular Evolution. 61 (2): 181–191. Bibcode:2005JMolE..61..181H. doi:10.1007/s00239-004-0304-4. PMID 16096681. S2CID 31230414.
Salehi-Ashtiani K, Szostak JW (November 2001). "In vitro evolution suggests multiple origins for the hammerhead ribozyme". Nature. 414 (6859): 82–84. Bibcode:2001Natur.414...82S. doi:10.1038/35102081. PMID 11689947. S2CID 4401483.
Burke MK, Dunham JP, Shahrestani P, Thornton KR, Rose MR, Long AD (September 2010). "Genome-wide analysis of a long-term evolution experiment with Drosophila". Nature. 467 (7315): 587–590. Bibcode:2010Natur.467..587B. doi:10.1038/nature09352. PMID 20844486. S2CID 205222217.
Schlötterer C, Tobler R, Kofler R, Nolte V (November 2014). "Sequencing pools of individuals - mining genome-wide polymorphism data without big funding". Nature Reviews. Genetics. 15 (11): 749–763. doi:10.1038/nrg3803. PMID 25246196. S2CID 35827109.
Rainey PB, Travisano M (July 1998). "Adaptive radiation in a heterogeneous environment". Nature. 394 (6688): 69–72. Bibcode:1998Natur.394...69R. doi:10.1038/27900. PMID 9665128. S2CID 40896184.
Ma Y, Chua SL (2021-11-15). "No collateral antibiotic sensitivity by alternating antibiotic pairs". The Lancet Microbe. 3 (1): e7. doi:10.1016/S2666-5247(21)00270-6. ISSN 2666-5247. PMID 35544116. S2CID 244147577.
Lenski RE, Rose MR, Simpson SC, Tadler SC (1991-12-01). "Long-Term Experimental Evolution in Escherichia coli. I. Adaptation and Divergence During 2,000 Generations". The American Naturalist. 138 (6): 1315–1341. Bibcode:1991ANat..138.1315L. doi:10.1086/285289. ISSN 0003-0147. S2CID 83996233.
Keeney BK, Raichlen DA, Meek TH, Wijeratne RS, Middleton KM, Gerdeman GL, Garland T (December 2008). "Differential response to a selective cannabinoid receptor antagonist (SR141716: rimonabant) in female mice from lines selectively bred for high voluntary wheel-running behaviour". Behavioural Pharmacology. 19 (8): 812–820. doi:10.1097/FBP.0b013e32831c3b6b. PMID 19020416. S2CID 16215160.
Sadowska ET, Baliga-Klimczyk K, Chrzaścik KM, Koteja P (2008). "Laboratory model of adaptive radiation: a selection experiment in the bank vole". Physiological and Biochemical Zoology. 81 (5): 627–640. Bibcode:2008PhyBZ..81..627S. doi:10.1086/590164. PMID 18781839. S2CID 20125314.
Maralingannavar V, Parmar D, Pant T, Gadgil C, Panchagnula V, Gadgil M (May 2017). "CHO Cells adapted to inorganic phosphate limitation show higher growth and higher pyruvate carboxylase flux in phosphate replete conditions". Biotechnology Progress. 33 (3): 749–758. doi:10.1002/btpr.2450. PMID 28220676. S2CID 4048737.
Ratcliff WC, Raney A, Westreich S, Cotner S (2014). "A Novel Laboratory Activity for Teaching about the Evolution of Multicellularity". The American Biology Teacher. 76 (2): 81–87. doi:10.1525/abt.2014.76.2.3. ISSN 0002-7685. S2CID 86079463.

uj.edu.pl (Global: 2,369^th place; English: 9,181^st place)

ruj.uj.edu.pl

Dheyongera G, Grzebyk K, Rudolf AM, Sadowska ET, Koteja P (April 2016). "The effect of chlorpyrifos on thermogenic capacity of bank voles selected for increased aerobic exercise metabolism". Chemosphere. 149: 383–390. Bibcode:2016Chmsp.149..383D. doi:10.1016/j.chemosphere.2015.12.120. PMID 26878110.

unil.ch (Global: 9,112^th place; English: 7,304^th place)

serval.unil.ch

Kawecki, Tadeusz J.; Lenski, Richard E.; Ebert, Dieter; Hollis, Brian; Olivieri, Isabelle; Whitlock, Michael C. (October 2012). "Experimental evolution" (PDF). Trends in Ecology & Evolution. 27 (10): 547–560. Bibcode:2012TEcoE..27..547K. doi:10.1016/j.tree.2012.06.001. PMID 22819306.

web.archive.org (Global: 1^st place; English: 1^st place)

Shaposhnikov GK (1966). "Origin and breakdown of reproductive isolation and the criterion of the species" (PDF). Entomological Review. 45: 1–8. Archived from the original (PDF) on 2013-09-08.
Lenski RE. "E. coli Long-term Experimental Evolution Project Site". Michigan State University. Archived from the original on 2017-07-27. Retrieved 2004-07-08.

worldcat.org (Global: 5^th place; English: 5^th place)

search.worldcat.org

Ma Y, Chua SL (2021-11-15). "No collateral antibiotic sensitivity by alternating antibiotic pairs". The Lancet Microbe. 3 (1): e7. doi:10.1016/S2666-5247(21)00270-6. ISSN 2666-5247. PMID 35544116. S2CID 244147577.
Lenski RE, Rose MR, Simpson SC, Tadler SC (1991-12-01). "Long-Term Experimental Evolution in Escherichia coli. I. Adaptation and Divergence During 2,000 Generations". The American Naturalist. 138 (6): 1315–1341. Bibcode:1991ANat..138.1315L. doi:10.1086/285289. ISSN 0003-0147. S2CID 83996233.
Bussotti, Giovanni; Piel, Laura; Pescher, Pascale; Domagalska, Malgorzata A.; Rajan, K. Shanmugha; Cohen-Chalamish, Smadar; Doniger, Tirza; Hiregange, Disha-Gajanan; Myler, Peter J.; Unger, Ron; Michaeli, Shulamit; Späth, Gerald F. (21 December 2021). "Genome instability drives epistatic adaptation in the human pathogen Leishmania". Proceedings of the National Academy of Sciences. 118 (51) e2113744118. Bibcode:2021PNAS..11813744B. doi:10.1073/pnas.2113744118. ISSN 0027-8424. PMC 8713814. PMID 34903666.
Ratcliff WC, Raney A, Westreich S, Cotner S (2014). "A Novel Laboratory Activity for Teaching about the Evolution of Multicellularity". The American Biology Teacher. 76 (2): 81–87. doi:10.1525/abt.2014.76.2.3. ISSN 0002-7685. S2CID 86079463.

zwz.ru (Global: low place; English: low place)

rogov.zwz.ru

Shaposhnikov GK (1966). "Origin and breakdown of reproductive isolation and the criterion of the species" (PDF). Entomological Review. 45: 1–8. Archived from the original (PDF) on 2013-09-08.

Experimental evolution (English Wikipedia)

doi.org (Global: 2nd place; English: 2nd place)

harvard.edu (Global: 18th place; English: 17th place)