Extrachromosomal DNA (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Extrachromosomal DNA" in English language version.

refsWebsite

Global rank English rank

67nih.gov

4^th place

44doi.org

2^nd place

12semanticscholar.org

11^th place

8^th place

10harvard.edu

18^th place

17^th place

1the-scientist.com

7,827^th place

5,905^th place

1archive.org

6^th place

1ums.edu.my

low place

1zenodo.org

621^st place

380^th place

1independent.co.uk

36^th place

33^rd place

1biorxiv.org

5,061^st place

5,698^th place

1acs.org

1,248^th place

1,104^th place

1theguardian.com

12^th place

11^th place

1worldcat.org

5^th place

acs.org

cen.acs.org

"The curious DNA circles that make treating cancer so hard". cen.acs.org. Retrieved 2021-10-02.

archive.org

Nelson D (2008). Lehninger Principles of Biochemistry. New York: W. H. Freeman and Company. pp. 307–308. ISBN 978-0-7167-7108-1.

biorxiv.org

Al-Shayeb, Basem; Schoelmerich, Marie C.; West-Roberts, Jacob; Valentin-Alvarado, Luis E.; Sachdeva, Rohan; Mullen, Susan; Crits-Christoph, Alexander; Wilkins, Michael J.; Williams, Kenneth H.; Doudna, Jennifer A.; Banfield, Jillian F. (10 July 2021). "Borgs are giant extrachromosomal elements with the potential to augment methane oxidation". bioRxiv: 2021.07.10.451761. doi:10.1101/2021.07.10.451761. S2CID 235812990. Retrieved 13 August 2021.

doi.org

Rush MG, Misra R (November 1985). "Extrachromosomal DNA in eucaryotes". Plasmid. 14 (3): 177–91. doi:10.1016/0147-619X(85)90001-0. PMID 3912782.
Verhaak RG, Bafna V, Mischel PS (May 2019). "Extrachromosomal oncogene amplification in tumour pathogenesis and evolution". Nature Reviews. Cancer. 19 (5): 283–288. doi:10.1038/s41568-019-0128-6. PMC 7168519. PMID 30872802.
Turner KM, Deshpande V, Beyter D, Koga T, Rusert J, Lee C, et al. (March 2017). "Extrachromosomal oncogene amplification drives tumour evolution and genetic heterogeneity". Nature. 543 (7643): 122–125. Bibcode:2017Natur.543..122T. doi:10.1038/nature21356. PMC 5334176. PMID 28178237.
Kuttler F, Mai S (February 2007). "Formation of non-random extrachromosomal elements during development, differentiation and oncogenesis". Seminars in Cancer Biology. 17 (1): 56–64. doi:10.1016/j.semcancer.2006.10.007. PMID 17116402.
Nathanson DA, Gini B, Mottahedeh J, Visnyei K, Koga T, Gomez G, et al. (January 2014). "Targeted therapy resistance mediated by dynamic regulation of extrachromosomal mutant EGFR DNA". Science. 343 (6166): 72–6. Bibcode:2014Sci...343...72N. doi:10.1126/science.1241328. PMC 4049335. PMID 24310612.
deCarvalho AC, Kim H, Poisson LM, Winn ME, Mueller C, Cherba D, et al. (May 2018). "Discordant inheritance of chromosomal and extrachromosomal DNA elements contributes to dynamic disease evolution in glioblastoma". Nature Genetics. 50 (5): 708–717. doi:10.1038/s41588-018-0105-0. PMC 5934307. PMID 29686388.
Koch J, Vogt G, Kissel W (May 1983). "Cytoplasmic DNA is structurally different from nuclear DNA". Die Naturwissenschaften. 70 (5): 252–4. Bibcode:1983NW.....70..252K. doi:10.1007/BF00405447. PMID 6877387. S2CID 9721603.
Dib JR, Liebl W, Wagenknecht M, Farías ME, Meinhardt F (January 2013). "Extrachromosomal genetic elements in Micrococcus". Applied Microbiology and Biotechnology. 97 (1): 63–75. doi:10.1007/s00253-012-4539-5. PMID 23138713. S2CID 5623260.
Laddy DJ, Weiner DB (2006). "From plasmids to protection: a review of DNA vaccines against infectious diseases". International Reviews of Immunology. 25 (3–4): 99–123. doi:10.1080/08830180600785827. PMID 16818367. S2CID 38432882.
Ongkudon CM, Ho J, Danquah MK (March 2011). "Mitigating the looming vaccine crisis: production and delivery of plasmid-based vaccines" (PDF). Critical Reviews in Biotechnology. 31 (1): 32–52. doi:10.3109/07388551.2010.483460. PMID 20879832. S2CID 207467603.
Hinnebusch J, Tilly K (December 1993). "Linear plasmids and chromosomes in bacteria". Molecular Microbiology. 10 (5): 917–22. doi:10.1111/j.1365-2958.1993.tb00963.x. PMID 7934868. S2CID 23852021.
Meinhardt F, Schaffrath R, Larsen M (April 1997). "Microbial linear plasmids". Applied Microbiology and Biotechnology. 47 (4): 329–36. doi:10.1007/s002530050936. PMID 9163946. S2CID 8092364.
Dance, Amber (16 July 2021). "Massive DNA 'Borg' structures perplex scientists". Nature. 595 (7869): 636. Bibcode:2021Natur.595..636D. doi:10.1038/d41586-021-01947-3. S2CID 236001172.
Al-Shayeb, Basem; Schoelmerich, Marie C.; West-Roberts, Jacob; Valentin-Alvarado, Luis E.; Sachdeva, Rohan; Mullen, Susan; Crits-Christoph, Alexander; Wilkins, Michael J.; Williams, Kenneth H.; Doudna, Jennifer A.; Banfield, Jillian F. (10 July 2021). "Borgs are giant extrachromosomal elements with the potential to augment methane oxidation". bioRxiv: 2021.07.10.451761. doi:10.1101/2021.07.10.451761. S2CID 235812990. Retrieved 13 August 2021.
Chinnery PF, Turnbull DM (July 1999). "Mitochondrial DNA and disease". Lancet. 354 Suppl 1 (9176): SI17-21. doi:10.1016/S0140-6736(99)90244-1. PMID 10437851. S2CID 38869885.
Dimmock D, Tang LY, Schmitt ES, Wong LJ (July 2010). "Quantitative evaluation of the mitochondrial DNA depletion syndrome". Clinical Chemistry. 56 (7): 1119–27. doi:10.1373/clinchem.2009.141549. PMID 20448188.
Bohr VA, Anson RM (August 1999). "Mitochondrial DNA repair pathways". Journal of Bioenergetics and Biomembranes. 31 (4): 391–8. doi:10.1023/A:1005484004167. PMID 10665528. S2CID 43100873.
Bendich AJ (June 2010). "Mitochondrial DNA, chloroplast DNA and the origins of development in eukaryotic organisms". Biology Direct. 5 (42): 42. doi:10.1186/1745-6150-5-42. PMC 2907347. PMID 20587059.
Bernt M, Braband A, Schierwater B, Stadler PF (November 2013). "Genetic aspects of mitochondrial genome evolution". Molecular Phylogenetics and Evolution. 69 (2): 328–38. doi:10.1016/j.ympev.2012.10.020. PMID 23142697.
Clegg MT, Gaut BS, Learn GH, Morton BR (July 1994). "Rates and patterns of chloroplast DNA evolution". Proceedings of the National Academy of Sciences of the United States of America. 91 (15): 6795–801. Bibcode:1994PNAS...91.6795C. doi:10.1073/pnas.91.15.6795. PMC 44285. PMID 8041699.
Lilly JW, Havey MJ, Jackson SA, Jiang J (February 2001). "Cytogenomic analyses reveal the structural plasticity of the chloroplast genome in higher plants". The Plant Cell. 13 (2): 245–54. doi:10.1105/tpc.13.2.245. PMC 102240. PMID 11226183.
Bendich AJ (July 2004). "Circular chloroplast chromosomes: the grand illusion". The Plant Cell. 16 (7): 1661–6. doi:10.1105/tpc.160771. PMC 514151. PMID 15235123.
Wang Y, Ding J, Daniell H, Hu H, Li X (September 2012). "Motif analysis unveils the possible co-regulation of chloroplast genes and nuclear genes encoding chloroplast proteins". Plant Molecular Biology. 80 (2): 177–87. doi:10.1007/s11103-012-9938-6. PMID 22733202. S2CID 18567678.
Pfalz J, Pfannschmidt T (April 2013). "Essential nucleoid proteins in early chloroplast development". Trends in Plant Science. 18 (4): 186–94. doi:10.1016/j.tplants.2012.11.003. PMID 23246438.
Rowan BA, Bendich AJ (2009). "The loss of DNA from chloroplasts as leaves mature: fact or artefact?". Journal of Experimental Botany. 60 (11): 3005–10. doi:10.1093/jxb/erp158. PMID 19454766.
Cohen S, Houben A, Segal D (March 2008). "Extrachromosomal circular DNA derived from tandemly repeated genomic sequences in plants". The Plant Journal. 53 (6): 1027–34. doi:10.1111/j.1365-313X.2007.03394.x. PMID 18088310.
Navrátilová A, Koblízková A, Macas J (August 2008). "Survey of extrachromosomal circular DNA derived from plant satellite repeats". BMC Plant Biology. 8: 90. doi:10.1186/1471-2229-8-90. PMC 2543021. PMID 18721471.
Cohen Z, Lavi S (July 2009). Sullivan BA (ed.). "Replication independent formation of extrachromosomal circular DNA in mammalian cell-free system". PLOS ONE. 4 (7): e6126. Bibcode:2009PLoSO...4.6126C. doi:10.1371/journal.pone.0006126. PMC 2699479. PMID 19568438.
Cohen S, Agmon N, Sobol O, Segal D (March 2010). "Extrachromosomal circles of satellite repeats and 5S ribosomal DNA in human cells". Mobile DNA. 1 (1): 11. doi:10.1186/1759-8753-1-11. PMC 3225859. PMID 20226008.
Sanjuán R, Nebot MR, Chirico N, Mansky LM, Belshaw R (October 2010). "Viral mutation rates". Journal of Virology. 84 (19): 9733–48. doi:10.1128/JVI.00694-10. PMC 2937809. PMID 20660197.
Lorenz LD, Rivera Cardona J, Lambert PF (October 2013). Roman A (ed.). "Inactivation of p53 rescues the maintenance of high risk HPV DNA genomes deficient in expression of E6". PLOS Pathogens. 9 (10): e1003717. doi:10.1371/journal.ppat.1003717. PMC 3812038. PMID 24204267.
Barber GN (September 2011). "Cytoplasmic DNA innate immune pathways". Immunological Reviews. 243 (1): 99–108. doi:10.1111/j.1600-065X.2011.01051.x. PMID 21884170. S2CID 205826027.
Barber GN (February 2011). "Innate immune DNA sensing pathways: STING, AIMII and the regulation of interferon production and inflammatory responses". Current Opinion in Immunology. 23 (1): 10–20. doi:10.1016/j.coi.2010.12.015. PMC 3881186. PMID 21239155.
Sato M, Sato K (August 2013). "Maternal inheritance of mitochondrial DNA by diverse mechanisms to eliminate paternal mitochondrial DNA". Biochimica et Biophysica Acta (BBA) - Molecular Cell Research. 1833 (8): 1979–84. doi:10.1016/j.bbamcr.2013.03.010. PMID 23524114.
Thyagarajan B, Wang R, Nelson H, Barcelo H, Koh WP, Yuan JM (June 2013). Bai Y (ed.). "Mitochondrial DNA copy number is associated with breast cancer risk". PLOS ONE. 8 (6): e65968. Bibcode:2013PLoSO...865968T. doi:10.1371/journal.pone.0065968. PMC 3680391. PMID 23776581.
Wilson RJ, Williamson DH (March 1997). "Extrachromosomal DNA in the Apicomplexa". Microbiology and Molecular Biology Reviews. 61 (1): 1–16. doi:10.1128/mmbr.61.1.1-16.1997. PMC 232597. PMID 9106361.
Creasey A, Mendis K, Carlton J, Williamson D, Wilson I, Carter R (May 1994). "Maternal inheritance of extrachromosomal DNA in malaria parasites". Molecular and Biochemical Parasitology. 65 (1): 95–8. doi:10.1016/0166-6851(94)90118-X. PMID 7935632.
Kim H, Nguyen NP, Turner K, Wu S, Gujar AD, Luebeck J, et al. (August 2020). "Extrachromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers". Nature Genetics. 52 (8): 891–897. doi:10.1038/s41588-020-0678-2. PMC 7484012. PMID 32807987.
Storlazzi CT, Lonoce A, Guastadisegni MC, Trombetta D, D'Addabbo P, Daniele G, et al. (September 2010). "Gene amplification as double minutes or homogeneously staining regions in solid tumors: origin and structure". Genome Research. 20 (9): 1198–206. doi:10.1101/gr.106252.110. PMC 2928498. PMID 20631050.
Von Hoff DD, McGill JR, Forseth BJ, Davidson KK, Bradley TP, Van Devanter DR, Wahl GM (September 1992). "Elimination of extrachromosomally amplified MYC genes from human tumor cells reduces their tumorigenicity". Proceedings of the National Academy of Sciences of the United States of America. 89 (17): 8165–9. Bibcode:1992PNAS...89.8165V. doi:10.1073/pnas.89.17.8165. PMC 49877. PMID 1518843.
Xu K, Ding L, Chang TC, Shao Y, Chiang J, Mulder H, et al. (January 2019). "Structure and evolution of double minutes in diagnosis and relapse brain tumors". Acta Neuropathologica. 137 (1): 123–137. doi:10.1007/s00401-018-1912-1. PMC 6338707. PMID 30267146.
McKie, Robin; Rose, J. C.; Chen, C. Y.; Pichugin, Y.; Xie, L.; Tang, J.; Hung, K. L.; Yost, K. E.; Shi, Q.; Erb, M. L.; Rajkumar, U.; Wu, S.; Taschner-Mandl, S.; Bernkopf, M.; Swanton, C.; Liu, Z.; Huang, W.; Chang, H. Y.; Bafna, V.; Henssen, A. G.; Werner, B.; Mischel, P. S. (February 18, 2023). "'Bond villain' DNA could transform cancer treatment, scientists say". The Observer. 54 (10): 1527–1533. doi:10.1038/s41588-022-01177-x. PMC 9534767. PMID 36123406.
Wu S, Turner KM, Nguyen N, Raviram R, Erb M, Santini J, et al. (November 2019). "Circular ecDNA promotes accessible chromatin and high oncogene expression". Nature. 575 (7784): 699–703. Bibcode:2019Natur.575..699W. doi:10.1038/s41586-019-1763-5. PMC 7094777. PMID 31748743.
Hung, King L.; Yost, Kathryn E.; Xie, Liangqi; Shi, Quanming; Helmsauer, Konstantin; Luebeck, Jens; Schöpflin, Robert; Lange, Joshua T.; Chamorro González, Rocío; Weiser, Natasha E.; Chen, Celine (December 2021). "ecDNA hubs drive cooperative intermolecular oncogene expression". Nature. 600 (7890): 731–736. Bibcode:2021Natur.600..731H. doi:10.1038/s41586-021-04116-8. ISSN 1476-4687. PMC 9126690. PMID 34819668.

harvard.edu

ui.adsabs.harvard.edu

Turner KM, Deshpande V, Beyter D, Koga T, Rusert J, Lee C, et al. (March 2017). "Extrachromosomal oncogene amplification drives tumour evolution and genetic heterogeneity". Nature. 543 (7643): 122–125. Bibcode:2017Natur.543..122T. doi:10.1038/nature21356. PMC 5334176. PMID 28178237.
Nathanson DA, Gini B, Mottahedeh J, Visnyei K, Koga T, Gomez G, et al. (January 2014). "Targeted therapy resistance mediated by dynamic regulation of extrachromosomal mutant EGFR DNA". Science. 343 (6166): 72–6. Bibcode:2014Sci...343...72N. doi:10.1126/science.1241328. PMC 4049335. PMID 24310612.
Koch J, Vogt G, Kissel W (May 1983). "Cytoplasmic DNA is structurally different from nuclear DNA". Die Naturwissenschaften. 70 (5): 252–4. Bibcode:1983NW.....70..252K. doi:10.1007/BF00405447. PMID 6877387. S2CID 9721603.
Dance, Amber (16 July 2021). "Massive DNA 'Borg' structures perplex scientists". Nature. 595 (7869): 636. Bibcode:2021Natur.595..636D. doi:10.1038/d41586-021-01947-3. S2CID 236001172.
Clegg MT, Gaut BS, Learn GH, Morton BR (July 1994). "Rates and patterns of chloroplast DNA evolution". Proceedings of the National Academy of Sciences of the United States of America. 91 (15): 6795–801. Bibcode:1994PNAS...91.6795C. doi:10.1073/pnas.91.15.6795. PMC 44285. PMID 8041699.
Cohen Z, Lavi S (July 2009). Sullivan BA (ed.). "Replication independent formation of extrachromosomal circular DNA in mammalian cell-free system". PLOS ONE. 4 (7): e6126. Bibcode:2009PLoSO...4.6126C. doi:10.1371/journal.pone.0006126. PMC 2699479. PMID 19568438.
Thyagarajan B, Wang R, Nelson H, Barcelo H, Koh WP, Yuan JM (June 2013). Bai Y (ed.). "Mitochondrial DNA copy number is associated with breast cancer risk". PLOS ONE. 8 (6): e65968. Bibcode:2013PLoSO...865968T. doi:10.1371/journal.pone.0065968. PMC 3680391. PMID 23776581.
Von Hoff DD, McGill JR, Forseth BJ, Davidson KK, Bradley TP, Van Devanter DR, Wahl GM (September 1992). "Elimination of extrachromosomally amplified MYC genes from human tumor cells reduces their tumorigenicity". Proceedings of the National Academy of Sciences of the United States of America. 89 (17): 8165–9. Bibcode:1992PNAS...89.8165V. doi:10.1073/pnas.89.17.8165. PMC 49877. PMID 1518843.
Wu S, Turner KM, Nguyen N, Raviram R, Erb M, Santini J, et al. (November 2019). "Circular ecDNA promotes accessible chromatin and high oncogene expression". Nature. 575 (7784): 699–703. Bibcode:2019Natur.575..699W. doi:10.1038/s41586-019-1763-5. PMC 7094777. PMID 31748743.
Hung, King L.; Yost, Kathryn E.; Xie, Liangqi; Shi, Quanming; Helmsauer, Konstantin; Luebeck, Jens; Schöpflin, Robert; Lange, Joshua T.; Chamorro González, Rocío; Weiser, Natasha E.; Chen, Celine (December 2021). "ecDNA hubs drive cooperative intermolecular oncogene expression". Nature. 600 (7890): 731–736. Bibcode:2021Natur.600..731H. doi:10.1038/s41586-021-04116-8. ISSN 1476-4687. PMC 9126690. PMID 34819668.

independent.co.uk

Andrew, Shakespeare, William Gurr (30 July 2021). "Previously undiscovered DNA 'borgs' found on California wetlands". The Independent. Retrieved 13 August 2021.{{cite news}}: CS1 maint: multiple names: authors list (link)

nih.gov

pubmed.ncbi.nlm.nih.gov

Rush MG, Misra R (November 1985). "Extrachromosomal DNA in eucaryotes". Plasmid. 14 (3): 177–91. doi:10.1016/0147-619X(85)90001-0. PMID 3912782.
Verhaak RG, Bafna V, Mischel PS (May 2019). "Extrachromosomal oncogene amplification in tumour pathogenesis and evolution". Nature Reviews. Cancer. 19 (5): 283–288. doi:10.1038/s41568-019-0128-6. PMC 7168519. PMID 30872802.
Turner KM, Deshpande V, Beyter D, Koga T, Rusert J, Lee C, et al. (March 2017). "Extrachromosomal oncogene amplification drives tumour evolution and genetic heterogeneity". Nature. 543 (7643): 122–125. Bibcode:2017Natur.543..122T. doi:10.1038/nature21356. PMC 5334176. PMID 28178237.
Kuttler F, Mai S (February 2007). "Formation of non-random extrachromosomal elements during development, differentiation and oncogenesis". Seminars in Cancer Biology. 17 (1): 56–64. doi:10.1016/j.semcancer.2006.10.007. PMID 17116402.
Nathanson DA, Gini B, Mottahedeh J, Visnyei K, Koga T, Gomez G, et al. (January 2014). "Targeted therapy resistance mediated by dynamic regulation of extrachromosomal mutant EGFR DNA". Science. 343 (6166): 72–6. Bibcode:2014Sci...343...72N. doi:10.1126/science.1241328. PMC 4049335. PMID 24310612.
deCarvalho AC, Kim H, Poisson LM, Winn ME, Mueller C, Cherba D, et al. (May 2018). "Discordant inheritance of chromosomal and extrachromosomal DNA elements contributes to dynamic disease evolution in glioblastoma". Nature Genetics. 50 (5): 708–717. doi:10.1038/s41588-018-0105-0. PMC 5934307. PMID 29686388.
Koch J, Vogt G, Kissel W (May 1983). "Cytoplasmic DNA is structurally different from nuclear DNA". Die Naturwissenschaften. 70 (5): 252–4. Bibcode:1983NW.....70..252K. doi:10.1007/BF00405447. PMID 6877387. S2CID 9721603.
Dib JR, Liebl W, Wagenknecht M, Farías ME, Meinhardt F (January 2013). "Extrachromosomal genetic elements in Micrococcus". Applied Microbiology and Biotechnology. 97 (1): 63–75. doi:10.1007/s00253-012-4539-5. PMID 23138713. S2CID 5623260.
Laddy DJ, Weiner DB (2006). "From plasmids to protection: a review of DNA vaccines against infectious diseases". International Reviews of Immunology. 25 (3–4): 99–123. doi:10.1080/08830180600785827. PMID 16818367. S2CID 38432882.
Ongkudon CM, Ho J, Danquah MK (March 2011). "Mitigating the looming vaccine crisis: production and delivery of plasmid-based vaccines" (PDF). Critical Reviews in Biotechnology. 31 (1): 32–52. doi:10.3109/07388551.2010.483460. PMID 20879832. S2CID 207467603.
Hinnebusch J, Tilly K (December 1993). "Linear plasmids and chromosomes in bacteria". Molecular Microbiology. 10 (5): 917–22. doi:10.1111/j.1365-2958.1993.tb00963.x. PMID 7934868. S2CID 23852021.
Meinhardt F, Schaffrath R, Larsen M (April 1997). "Microbial linear plasmids". Applied Microbiology and Biotechnology. 47 (4): 329–36. doi:10.1007/s002530050936. PMID 9163946. S2CID 8092364.
Chinnery PF, Turnbull DM (July 1999). "Mitochondrial DNA and disease". Lancet. 354 Suppl 1 (9176): SI17-21. doi:10.1016/S0140-6736(99)90244-1. PMID 10437851. S2CID 38869885.
Dimmock D, Tang LY, Schmitt ES, Wong LJ (July 2010). "Quantitative evaluation of the mitochondrial DNA depletion syndrome". Clinical Chemistry. 56 (7): 1119–27. doi:10.1373/clinchem.2009.141549. PMID 20448188.
Bohr VA, Anson RM (August 1999). "Mitochondrial DNA repair pathways". Journal of Bioenergetics and Biomembranes. 31 (4): 391–8. doi:10.1023/A:1005484004167. PMID 10665528. S2CID 43100873.
Bendich AJ (June 2010). "Mitochondrial DNA, chloroplast DNA and the origins of development in eukaryotic organisms". Biology Direct. 5 (42): 42. doi:10.1186/1745-6150-5-42. PMC 2907347. PMID 20587059.
Bernt M, Braband A, Schierwater B, Stadler PF (November 2013). "Genetic aspects of mitochondrial genome evolution". Molecular Phylogenetics and Evolution. 69 (2): 328–38. doi:10.1016/j.ympev.2012.10.020. PMID 23142697.
Clegg MT, Gaut BS, Learn GH, Morton BR (July 1994). "Rates and patterns of chloroplast DNA evolution". Proceedings of the National Academy of Sciences of the United States of America. 91 (15): 6795–801. Bibcode:1994PNAS...91.6795C. doi:10.1073/pnas.91.15.6795. PMC 44285. PMID 8041699.
Lilly JW, Havey MJ, Jackson SA, Jiang J (February 2001). "Cytogenomic analyses reveal the structural plasticity of the chloroplast genome in higher plants". The Plant Cell. 13 (2): 245–54. doi:10.1105/tpc.13.2.245. PMC 102240. PMID 11226183.
Bendich AJ (July 2004). "Circular chloroplast chromosomes: the grand illusion". The Plant Cell. 16 (7): 1661–6. doi:10.1105/tpc.160771. PMC 514151. PMID 15235123.
Wang Y, Ding J, Daniell H, Hu H, Li X (September 2012). "Motif analysis unveils the possible co-regulation of chloroplast genes and nuclear genes encoding chloroplast proteins". Plant Molecular Biology. 80 (2): 177–87. doi:10.1007/s11103-012-9938-6. PMID 22733202. S2CID 18567678.
Pfalz J, Pfannschmidt T (April 2013). "Essential nucleoid proteins in early chloroplast development". Trends in Plant Science. 18 (4): 186–94. doi:10.1016/j.tplants.2012.11.003. PMID 23246438.
Rowan BA, Bendich AJ (2009). "The loss of DNA from chloroplasts as leaves mature: fact or artefact?". Journal of Experimental Botany. 60 (11): 3005–10. doi:10.1093/jxb/erp158. PMID 19454766.
Cohen S, Houben A, Segal D (March 2008). "Extrachromosomal circular DNA derived from tandemly repeated genomic sequences in plants". The Plant Journal. 53 (6): 1027–34. doi:10.1111/j.1365-313X.2007.03394.x. PMID 18088310.
Navrátilová A, Koblízková A, Macas J (August 2008). "Survey of extrachromosomal circular DNA derived from plant satellite repeats". BMC Plant Biology. 8: 90. doi:10.1186/1471-2229-8-90. PMC 2543021. PMID 18721471.
Cohen Z, Lavi S (July 2009). Sullivan BA (ed.). "Replication independent formation of extrachromosomal circular DNA in mammalian cell-free system". PLOS ONE. 4 (7): e6126. Bibcode:2009PLoSO...4.6126C. doi:10.1371/journal.pone.0006126. PMC 2699479. PMID 19568438.
Cohen S, Agmon N, Sobol O, Segal D (March 2010). "Extrachromosomal circles of satellite repeats and 5S ribosomal DNA in human cells". Mobile DNA. 1 (1): 11. doi:10.1186/1759-8753-1-11. PMC 3225859. PMID 20226008.
Sanjuán R, Nebot MR, Chirico N, Mansky LM, Belshaw R (October 2010). "Viral mutation rates". Journal of Virology. 84 (19): 9733–48. doi:10.1128/JVI.00694-10. PMC 2937809. PMID 20660197.
Lorenz LD, Rivera Cardona J, Lambert PF (October 2013). Roman A (ed.). "Inactivation of p53 rescues the maintenance of high risk HPV DNA genomes deficient in expression of E6". PLOS Pathogens. 9 (10): e1003717. doi:10.1371/journal.ppat.1003717. PMC 3812038. PMID 24204267.
Barber GN (September 2011). "Cytoplasmic DNA innate immune pathways". Immunological Reviews. 243 (1): 99–108. doi:10.1111/j.1600-065X.2011.01051.x. PMID 21884170. S2CID 205826027.
Barber GN (February 2011). "Innate immune DNA sensing pathways: STING, AIMII and the regulation of interferon production and inflammatory responses". Current Opinion in Immunology. 23 (1): 10–20. doi:10.1016/j.coi.2010.12.015. PMC 3881186. PMID 21239155.
Sato M, Sato K (August 2013). "Maternal inheritance of mitochondrial DNA by diverse mechanisms to eliminate paternal mitochondrial DNA". Biochimica et Biophysica Acta (BBA) - Molecular Cell Research. 1833 (8): 1979–84. doi:10.1016/j.bbamcr.2013.03.010. PMID 23524114.
Thyagarajan B, Wang R, Nelson H, Barcelo H, Koh WP, Yuan JM (June 2013). Bai Y (ed.). "Mitochondrial DNA copy number is associated with breast cancer risk". PLOS ONE. 8 (6): e65968. Bibcode:2013PLoSO...865968T. doi:10.1371/journal.pone.0065968. PMC 3680391. PMID 23776581.
Wilson RJ, Williamson DH (March 1997). "Extrachromosomal DNA in the Apicomplexa". Microbiology and Molecular Biology Reviews. 61 (1): 1–16. doi:10.1128/mmbr.61.1.1-16.1997. PMC 232597. PMID 9106361.
Creasey A, Mendis K, Carlton J, Williamson D, Wilson I, Carter R (May 1994). "Maternal inheritance of extrachromosomal DNA in malaria parasites". Molecular and Biochemical Parasitology. 65 (1): 95–8. doi:10.1016/0166-6851(94)90118-X. PMID 7935632.
Kim H, Nguyen NP, Turner K, Wu S, Gujar AD, Luebeck J, et al. (August 2020). "Extrachromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers". Nature Genetics. 52 (8): 891–897. doi:10.1038/s41588-020-0678-2. PMC 7484012. PMID 32807987.
Storlazzi CT, Lonoce A, Guastadisegni MC, Trombetta D, D'Addabbo P, Daniele G, et al. (September 2010). "Gene amplification as double minutes or homogeneously staining regions in solid tumors: origin and structure". Genome Research. 20 (9): 1198–206. doi:10.1101/gr.106252.110. PMC 2928498. PMID 20631050.
Von Hoff DD, McGill JR, Forseth BJ, Davidson KK, Bradley TP, Van Devanter DR, Wahl GM (September 1992). "Elimination of extrachromosomally amplified MYC genes from human tumor cells reduces their tumorigenicity". Proceedings of the National Academy of Sciences of the United States of America. 89 (17): 8165–9. Bibcode:1992PNAS...89.8165V. doi:10.1073/pnas.89.17.8165. PMC 49877. PMID 1518843.
Xu K, Ding L, Chang TC, Shao Y, Chiang J, Mulder H, et al. (January 2019). "Structure and evolution of double minutes in diagnosis and relapse brain tumors". Acta Neuropathologica. 137 (1): 123–137. doi:10.1007/s00401-018-1912-1. PMC 6338707. PMID 30267146.
McKie, Robin; Rose, J. C.; Chen, C. Y.; Pichugin, Y.; Xie, L.; Tang, J.; Hung, K. L.; Yost, K. E.; Shi, Q.; Erb, M. L.; Rajkumar, U.; Wu, S.; Taschner-Mandl, S.; Bernkopf, M.; Swanton, C.; Liu, Z.; Huang, W.; Chang, H. Y.; Bafna, V.; Henssen, A. G.; Werner, B.; Mischel, P. S. (February 18, 2023). "'Bond villain' DNA could transform cancer treatment, scientists say". The Observer. 54 (10): 1527–1533. doi:10.1038/s41588-022-01177-x. PMC 9534767. PMID 36123406.
Wu S, Turner KM, Nguyen N, Raviram R, Erb M, Santini J, et al. (November 2019). "Circular ecDNA promotes accessible chromatin and high oncogene expression". Nature. 575 (7784): 699–703. Bibcode:2019Natur.575..699W. doi:10.1038/s41586-019-1763-5. PMC 7094777. PMID 31748743.
Hung, King L.; Yost, Kathryn E.; Xie, Liangqi; Shi, Quanming; Helmsauer, Konstantin; Luebeck, Jens; Schöpflin, Robert; Lange, Joshua T.; Chamorro González, Rocío; Weiser, Natasha E.; Chen, Celine (December 2021). "ecDNA hubs drive cooperative intermolecular oncogene expression". Nature. 600 (7890): 731–736. Bibcode:2021Natur.600..731H. doi:10.1038/s41586-021-04116-8. ISSN 1476-4687. PMC 9126690. PMID 34819668.

ncbi.nlm.nih.gov

Verhaak RG, Bafna V, Mischel PS (May 2019). "Extrachromosomal oncogene amplification in tumour pathogenesis and evolution". Nature Reviews. Cancer. 19 (5): 283–288. doi:10.1038/s41568-019-0128-6. PMC 7168519. PMID 30872802.
Turner KM, Deshpande V, Beyter D, Koga T, Rusert J, Lee C, et al. (March 2017). "Extrachromosomal oncogene amplification drives tumour evolution and genetic heterogeneity". Nature. 543 (7643): 122–125. Bibcode:2017Natur.543..122T. doi:10.1038/nature21356. PMC 5334176. PMID 28178237.
Nathanson DA, Gini B, Mottahedeh J, Visnyei K, Koga T, Gomez G, et al. (January 2014). "Targeted therapy resistance mediated by dynamic regulation of extrachromosomal mutant EGFR DNA". Science. 343 (6166): 72–6. Bibcode:2014Sci...343...72N. doi:10.1126/science.1241328. PMC 4049335. PMID 24310612.
deCarvalho AC, Kim H, Poisson LM, Winn ME, Mueller C, Cherba D, et al. (May 2018). "Discordant inheritance of chromosomal and extrachromosomal DNA elements contributes to dynamic disease evolution in glioblastoma". Nature Genetics. 50 (5): 708–717. doi:10.1038/s41588-018-0105-0. PMC 5934307. PMID 29686388.
Bendich AJ (June 2010). "Mitochondrial DNA, chloroplast DNA and the origins of development in eukaryotic organisms". Biology Direct. 5 (42): 42. doi:10.1186/1745-6150-5-42. PMC 2907347. PMID 20587059.
Clegg MT, Gaut BS, Learn GH, Morton BR (July 1994). "Rates and patterns of chloroplast DNA evolution". Proceedings of the National Academy of Sciences of the United States of America. 91 (15): 6795–801. Bibcode:1994PNAS...91.6795C. doi:10.1073/pnas.91.15.6795. PMC 44285. PMID 8041699.
Lilly JW, Havey MJ, Jackson SA, Jiang J (February 2001). "Cytogenomic analyses reveal the structural plasticity of the chloroplast genome in higher plants". The Plant Cell. 13 (2): 245–54. doi:10.1105/tpc.13.2.245. PMC 102240. PMID 11226183.
Bendich AJ (July 2004). "Circular chloroplast chromosomes: the grand illusion". The Plant Cell. 16 (7): 1661–6. doi:10.1105/tpc.160771. PMC 514151. PMID 15235123.
Navrátilová A, Koblízková A, Macas J (August 2008). "Survey of extrachromosomal circular DNA derived from plant satellite repeats". BMC Plant Biology. 8: 90. doi:10.1186/1471-2229-8-90. PMC 2543021. PMID 18721471.
Cohen Z, Lavi S (July 2009). Sullivan BA (ed.). "Replication independent formation of extrachromosomal circular DNA in mammalian cell-free system". PLOS ONE. 4 (7): e6126. Bibcode:2009PLoSO...4.6126C. doi:10.1371/journal.pone.0006126. PMC 2699479. PMID 19568438.
Cohen S, Agmon N, Sobol O, Segal D (March 2010). "Extrachromosomal circles of satellite repeats and 5S ribosomal DNA in human cells". Mobile DNA. 1 (1): 11. doi:10.1186/1759-8753-1-11. PMC 3225859. PMID 20226008.
Sanjuán R, Nebot MR, Chirico N, Mansky LM, Belshaw R (October 2010). "Viral mutation rates". Journal of Virology. 84 (19): 9733–48. doi:10.1128/JVI.00694-10. PMC 2937809. PMID 20660197.
"Viral Genomes".
Lorenz LD, Rivera Cardona J, Lambert PF (October 2013). Roman A (ed.). "Inactivation of p53 rescues the maintenance of high risk HPV DNA genomes deficient in expression of E6". PLOS Pathogens. 9 (10): e1003717. doi:10.1371/journal.ppat.1003717. PMC 3812038. PMID 24204267.
Barber GN (February 2011). "Innate immune DNA sensing pathways: STING, AIMII and the regulation of interferon production and inflammatory responses". Current Opinion in Immunology. 23 (1): 10–20. doi:10.1016/j.coi.2010.12.015. PMC 3881186. PMID 21239155.
Griffiths AJ (2000). An Introduction to Genetic Analysis. New York: W.H.Freeman.
Thyagarajan B, Wang R, Nelson H, Barcelo H, Koh WP, Yuan JM (June 2013). Bai Y (ed.). "Mitochondrial DNA copy number is associated with breast cancer risk". PLOS ONE. 8 (6): e65968. Bibcode:2013PLoSO...865968T. doi:10.1371/journal.pone.0065968. PMC 3680391. PMID 23776581.
Wilson RJ, Williamson DH (March 1997). "Extrachromosomal DNA in the Apicomplexa". Microbiology and Molecular Biology Reviews. 61 (1): 1–16. doi:10.1128/mmbr.61.1.1-16.1997. PMC 232597. PMID 9106361.
Kim H, Nguyen NP, Turner K, Wu S, Gujar AD, Luebeck J, et al. (August 2020). "Extrachromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers". Nature Genetics. 52 (8): 891–897. doi:10.1038/s41588-020-0678-2. PMC 7484012. PMID 32807987.
Storlazzi CT, Lonoce A, Guastadisegni MC, Trombetta D, D'Addabbo P, Daniele G, et al. (September 2010). "Gene amplification as double minutes or homogeneously staining regions in solid tumors: origin and structure". Genome Research. 20 (9): 1198–206. doi:10.1101/gr.106252.110. PMC 2928498. PMID 20631050.
Von Hoff DD, McGill JR, Forseth BJ, Davidson KK, Bradley TP, Van Devanter DR, Wahl GM (September 1992). "Elimination of extrachromosomally amplified MYC genes from human tumor cells reduces their tumorigenicity". Proceedings of the National Academy of Sciences of the United States of America. 89 (17): 8165–9. Bibcode:1992PNAS...89.8165V. doi:10.1073/pnas.89.17.8165. PMC 49877. PMID 1518843.
Xu K, Ding L, Chang TC, Shao Y, Chiang J, Mulder H, et al. (January 2019). "Structure and evolution of double minutes in diagnosis and relapse brain tumors". Acta Neuropathologica. 137 (1): 123–137. doi:10.1007/s00401-018-1912-1. PMC 6338707. PMID 30267146.
McKie, Robin; Rose, J. C.; Chen, C. Y.; Pichugin, Y.; Xie, L.; Tang, J.; Hung, K. L.; Yost, K. E.; Shi, Q.; Erb, M. L.; Rajkumar, U.; Wu, S.; Taschner-Mandl, S.; Bernkopf, M.; Swanton, C.; Liu, Z.; Huang, W.; Chang, H. Y.; Bafna, V.; Henssen, A. G.; Werner, B.; Mischel, P. S. (February 18, 2023). "'Bond villain' DNA could transform cancer treatment, scientists say". The Observer. 54 (10): 1527–1533. doi:10.1038/s41588-022-01177-x. PMC 9534767. PMID 36123406.
Wu S, Turner KM, Nguyen N, Raviram R, Erb M, Santini J, et al. (November 2019). "Circular ecDNA promotes accessible chromatin and high oncogene expression". Nature. 575 (7784): 699–703. Bibcode:2019Natur.575..699W. doi:10.1038/s41586-019-1763-5. PMC 7094777. PMID 31748743.
Hung, King L.; Yost, Kathryn E.; Xie, Liangqi; Shi, Quanming; Helmsauer, Konstantin; Luebeck, Jens; Schöpflin, Robert; Lange, Joshua T.; Chamorro González, Rocío; Weiser, Natasha E.; Chen, Celine (December 2021). "ecDNA hubs drive cooperative intermolecular oncogene expression". Nature. 600 (7890): 731–736. Bibcode:2021Natur.600..731H. doi:10.1038/s41586-021-04116-8. ISSN 1476-4687. PMC 9126690. PMID 34819668.

semanticscholar.org

api.semanticscholar.org

Koch J, Vogt G, Kissel W (May 1983). "Cytoplasmic DNA is structurally different from nuclear DNA". Die Naturwissenschaften. 70 (5): 252–4. Bibcode:1983NW.....70..252K. doi:10.1007/BF00405447. PMID 6877387. S2CID 9721603.
Dib JR, Liebl W, Wagenknecht M, Farías ME, Meinhardt F (January 2013). "Extrachromosomal genetic elements in Micrococcus". Applied Microbiology and Biotechnology. 97 (1): 63–75. doi:10.1007/s00253-012-4539-5. PMID 23138713. S2CID 5623260.
Laddy DJ, Weiner DB (2006). "From plasmids to protection: a review of DNA vaccines against infectious diseases". International Reviews of Immunology. 25 (3–4): 99–123. doi:10.1080/08830180600785827. PMID 16818367. S2CID 38432882.
Ongkudon CM, Ho J, Danquah MK (March 2011). "Mitigating the looming vaccine crisis: production and delivery of plasmid-based vaccines" (PDF). Critical Reviews in Biotechnology. 31 (1): 32–52. doi:10.3109/07388551.2010.483460. PMID 20879832. S2CID 207467603.
Hinnebusch J, Tilly K (December 1993). "Linear plasmids and chromosomes in bacteria". Molecular Microbiology. 10 (5): 917–22. doi:10.1111/j.1365-2958.1993.tb00963.x. PMID 7934868. S2CID 23852021.
Meinhardt F, Schaffrath R, Larsen M (April 1997). "Microbial linear plasmids". Applied Microbiology and Biotechnology. 47 (4): 329–36. doi:10.1007/s002530050936. PMID 9163946. S2CID 8092364.
Dance, Amber (16 July 2021). "Massive DNA 'Borg' structures perplex scientists". Nature. 595 (7869): 636. Bibcode:2021Natur.595..636D. doi:10.1038/d41586-021-01947-3. S2CID 236001172.
Al-Shayeb, Basem; Schoelmerich, Marie C.; West-Roberts, Jacob; Valentin-Alvarado, Luis E.; Sachdeva, Rohan; Mullen, Susan; Crits-Christoph, Alexander; Wilkins, Michael J.; Williams, Kenneth H.; Doudna, Jennifer A.; Banfield, Jillian F. (10 July 2021). "Borgs are giant extrachromosomal elements with the potential to augment methane oxidation". bioRxiv: 2021.07.10.451761. doi:10.1101/2021.07.10.451761. S2CID 235812990. Retrieved 13 August 2021.
Chinnery PF, Turnbull DM (July 1999). "Mitochondrial DNA and disease". Lancet. 354 Suppl 1 (9176): SI17-21. doi:10.1016/S0140-6736(99)90244-1. PMID 10437851. S2CID 38869885.
Bohr VA, Anson RM (August 1999). "Mitochondrial DNA repair pathways". Journal of Bioenergetics and Biomembranes. 31 (4): 391–8. doi:10.1023/A:1005484004167. PMID 10665528. S2CID 43100873.
Wang Y, Ding J, Daniell H, Hu H, Li X (September 2012). "Motif analysis unveils the possible co-regulation of chloroplast genes and nuclear genes encoding chloroplast proteins". Plant Molecular Biology. 80 (2): 177–87. doi:10.1007/s11103-012-9938-6. PMID 22733202. S2CID 18567678.
Barber GN (September 2011). "Cytoplasmic DNA innate immune pathways". Immunological Reviews. 243 (1): 99–108. doi:10.1111/j.1600-065X.2011.01051.x. PMID 21884170. S2CID 205826027.

the-scientist.com

"Cancer May Be Driven by DNA Outside of Chromosomes". The Scientist Magazine®. Retrieved 2021-10-05.

theguardian.com

McKie, Robin; Rose, J. C.; Chen, C. Y.; Pichugin, Y.; Xie, L.; Tang, J.; Hung, K. L.; Yost, K. E.; Shi, Q.; Erb, M. L.; Rajkumar, U.; Wu, S.; Taschner-Mandl, S.; Bernkopf, M.; Swanton, C.; Liu, Z.; Huang, W.; Chang, H. Y.; Bafna, V.; Henssen, A. G.; Werner, B.; Mischel, P. S. (February 18, 2023). "'Bond villain' DNA could transform cancer treatment, scientists say". The Observer. 54 (10): 1527–1533. doi:10.1038/s41588-022-01177-x. PMC 9534767. PMID 36123406.

ums.edu.my

eprints.ums.edu.my

Ongkudon CM, Ho J, Danquah MK (March 2011). "Mitigating the looming vaccine crisis: production and delivery of plasmid-based vaccines" (PDF). Critical Reviews in Biotechnology. 31 (1): 32–52. doi:10.3109/07388551.2010.483460. PMID 20879832. S2CID 207467603.

worldcat.org

search.worldcat.org

Hung, King L.; Yost, Kathryn E.; Xie, Liangqi; Shi, Quanming; Helmsauer, Konstantin; Luebeck, Jens; Schöpflin, Robert; Lange, Joshua T.; Chamorro González, Rocío; Weiser, Natasha E.; Chen, Celine (December 2021). "ecDNA hubs drive cooperative intermolecular oncogene expression". Nature. 600 (7890): 731–736. Bibcode:2021Natur.600..731H. doi:10.1038/s41586-021-04116-8. ISSN 1476-4687. PMC 9126690. PMID 34819668.

zenodo.org

Hinnebusch J, Tilly K (December 1993). "Linear plasmids and chromosomes in bacteria". Molecular Microbiology. 10 (5): 917–22. doi:10.1111/j.1365-2958.1993.tb00963.x. PMID 7934868. S2CID 23852021.