Folding@home (English Wikipedia)

Pronk, Sander; Larsson, Per; Pouya, Iman; Bowman, Gregory R.; Haque, Imran S.; Beauchamp, Kyle; Hess, Berk; Pande, Vijay S.; Kasson, Peter M.; Lindahl, Erik (November 12, 2011). "Copernicus: a new paradigm for parallel adaptive molecular dynamics". 2011 International Conference for High Performance Computing, Networking, Storage and Analysis. ACM: 1–10. doi:10.1145/2063384.2063465. ISBN 978-1-4503-0771-0.{{cite journal}}: CS1 maint: date and year (link)

portal.acm.org

Nov, Oded; Arazy, Ofer; Anderson, David (2011). "Dusting for science". Proceedings of the 2011 iConference. IConference '11. Seattle, Washington: ACM Press. pp. 68–74. doi:10.1145/1940761.1940771. ISBN 9781450301213. S2CID 12219985.

anandtech.com

Shilov, Anton (March 25, 2020). "Folding@Home Reaches Exascale: 1,500,000,000,000,000,000 Operations Per Second for COVID-19". Anandtech. Retrieved March 26, 2020.

archive.today

Pande lab. "Client Statistics by OS". Archive.is. Archived from the original on April 12, 2020. Retrieved April 12, 2020.
"MSMBuilder Source Code Repository". MSMBuilder. simtk.org. 2012. Archived from the original on December 28, 2012. Retrieved October 12, 2012.
Folding@home developers. "FAHControl source code repository". foldingathome.org. Archived from the original on December 12, 2012. Retrieved October 15, 2012.
Vijay Pande (April 10, 2008). "GPU2 open beta". Folding@home. typepad.com. Archived from the original on July 9, 2012. Retrieved September 7, 2011.

arstechnica.com

"The coronavirus pandemic turned Folding@Home into an exaFLOP supercomputer". April 14, 2020.

arxiv.org

Raddick, M. Jordan; Bracey, Georgia; Gay, Pamela L.; Lintott, Chris J.; Murray, Phil; Schawinski, Kevin; Szalay, Alexander S.; Vandenberg, Jan (December 2010). "Galaxy Zoo: Exploring the Motivations of Citizen Science Volunteers". Astronomy Education Review. 9 (1): 010103. arXiv:0909.2925. Bibcode:2010AEdRv...9a0103R. doi:10.3847/AER2009036. S2CID 118372704.
I. Haque; V. S. Pande (2010). "Hard Data on Soft Errors: A Large-Scale Assessment of Real-World Error Rates in GPGPU". 2010 10th IEEE/ACM International Conference on Cluster, Cloud and Grid Computing. pp. 691–696. arXiv:0910.0505. doi:10.1109/CCGRID.2010.84. ISBN 978-1-4244-6987-1. S2CID 10723933.

bakerlab.org

boinc.bakerlab.org

Gen_X_Accord, Vijay Pande (June 11, 2006). "Folding@home vs. Rosetta@home". Rosetta@home forums. University of Washington. Archived from the original on August 8, 2014. Retrieved September 20, 2012.

biophysics.org

"Biophysical Society Names Five 2012 Award Recipients". Biophysics.org. Biophysical Society. August 17, 2011. Archived from the original on March 27, 2012. Retrieved September 20, 2012.

blackhat.com

"Fixing/Making Holes in ELF Binaries/Programs - Black Hat".
"Certificate Bypass: Hiding and Executing Malware from a Digitally Signed Executable" (PDF). BlackHat.com. Deep Instinct. August 2016.

boarddigger.com

Rattledagger, Vijay Pande (April 1, 2005). "Folding@home client for BOINC in beta "soon"". Boarddigger.com. Anandtech.com. Archived from the original on September 17, 2012. Retrieved September 20, 2012.

books.google.com

Fratzl, Peter (2008). Collagen: structure and mechanics. Springer. ISBN 978-0-387-73905-2. Retrieved March 17, 2012.

castroller.com

"Futures in Biotech 27: Folding@home at 1.3 Petaflops". Castroller.com. CastRoller. December 28, 2007. Archived from the original (Interview, webcast) on November 29, 2011. Retrieved September 20, 2012.

cnn.com

edition.cnn.com

David E. Williams (October 20, 2006). "PlayStation's serious side: Fighting disease". CNN. Archived from the original on June 22, 2012. Retrieved September 20, 2012.

copernicus-computing.org

Sander Pronk; Iman Pouya; Per Larsson; Peter Kasson; Erik Lindahl (November 17, 2011). "Copernicus Download". copernicus-computing.org. Copernicus. Archived from the original on October 7, 2012. Retrieved October 2, 2012.

docs.google.com

Risto Kantonen (September 23, 2013). "Folding@home Stats - Google Docs". Folding@home. Retrieved September 23, 2013.

doi.org

V. S. Pande; K. Beauchamp; G. R. Bowman (2010). "Everything you wanted to know about Markov State Models but were afraid to ask". Methods. 52 (1): 99–105. doi:10.1016/j.ymeth.2010.06.002. PMC 2933958. PMID 20570730.
Vincent A. Voelz; Gregory R. Bowman; Kyle Beauchamp; Vijay S. Pande (2010). "Molecular simulation of ab initio protein folding for a millisecond folder NTL9(1–39)". Journal of the American Chemical Society. 132 (5): 1526–1528. doi:10.1021/ja9090353. PMC 2835335. PMID 20070076.
Gregory R. Bowman; Vijay S. Pande (2010). "Protein folded states are kinetic hubs". Proceedings of the National Academy of Sciences. 107 (24): 10890–5. Bibcode:2010PNAS..10710890B. doi:10.1073/pnas.1003962107. PMC 2890711. PMID 20534497.
Christopher D. Snow; Houbi Nguyen; Vijay S. Pande; Martin Gruebele (2002). "Absolute comparison of simulated and experimental protein-folding dynamics" (PDF). Nature. 420 (6911): 102–106. Bibcode:2002Natur.420..102S. doi:10.1038/nature01160. PMID 12422224. S2CID 1061159. Archived from the original (PDF) on March 24, 2012.
Fabrizio Marinelli, Fabio Pietrucci, Alessandro Laio, Stefano Piana (2009). Pande, Vijay S. (ed.). "A Kinetic Model of Trp-Cage Folding from Multiple Biased Molecular Dynamics Simulations". PLOS Computational Biology. 5 (8): e1000452. Bibcode:2009PLSCB...5E0452M. doi:10.1371/journal.pcbi.1000452. PMC 2711228. PMID 19662155.{{cite journal}}: CS1 maint: multiple names: authors list (link)
"So Much More to Know". Science. 309 (5731): 78–102. 2005. doi:10.1126/science.309.5731.78b. PMID 15994524. S2CID 33234834.
Heath Ecroyd; John A. Carver (2008). "Unraveling the mysteries of protein folding and misfolding". IUBMB Life (review). 60 (12): 769–774. doi:10.1002/iub.117. PMID 18767168. S2CID 10115925.
Yiwen Chen; Feng Ding; Huifen Nie; Adrian W. Serohijos; Shantanu Sharma; Kyle C. Wilcox; Shuangye Yin; Nikolay V. Dokholyan (2008). "Protein folding: Then and now". Archives of Biochemistry and Biophysics. 469 (1): 4–19. doi:10.1016/j.abb.2007.05.014. PMC 2173875. PMID 17585870.
Leila M Luheshi; Damian Crowther; Christopher Dobson (2008). "Protein misfolding and disease: from the test tube to the organism". Current Opinion in Chemical Biology. 12 (1): 25–31. doi:10.1016/j.cbpa.2008.02.011. PMID 18295611.
C. D. Snow; E. J. Sorin; Y. M. Rhee; V. S. Pande. (2005). "How well can simulation predict protein folding kinetics and thermodynamics?". Annual Review of Biophysics (review). 34: 43–69. doi:10.1146/annurev.biophys.34.040204.144447. PMID 15869383.
Vijay S. Pande; Ian Baker; Jarrod Chapman; Sidney P. Elmer; Siraj Khaliq; Stefan M. Larson; Young Min Rhee; Michael R. Shirts; Christopher D. Snow; Eric J. Sorin; Bojan Zagrovic (2002). "Atomistic protein folding simulations on the submillisecond timescale using worldwide distributed computing". Biopolymers. 68 (1): 91–109. doi:10.1002/bip.10219. PMID 12579582.
G. Bowman; V. Volez; V. S. Pande (2011). "Taming the complexity of protein folding". Current Opinion in Structural Biology. 21 (1): 4–11. doi:10.1016/j.sbi.2010.10.006. PMC 3042729. PMID 21081274.
Chodera, John D.; Swope, William C.; Pitera, Jed W.; Dill, Ken A. (January 1, 2006). "Long-Time Protein Folding Dynamics from Short-Time Molecular Dynamics Simulations". Multiscale Modeling & Simulation. 5 (4): 1214–1226. doi:10.1137/06065146X. S2CID 17825277.
Robert B Best (2012). "Atomistic molecular simulations of protein folding". Current Opinion in Structural Biology (review). 22 (1): 52–61. doi:10.1016/j.sbi.2011.12.001. PMID 22257762.
Gregory R. Bowman; Daniel L. Ensign; Vijay S. Pande (2010). "Enhanced Modeling via Network Theory: Adaptive Sampling of Markov State Models". Journal of Chemical Theory and Computation. 6 (3): 787–794. doi:10.1021/ct900620b. PMC 3637129. PMID 23626502.
Kyle A. Beauchamp; Daniel L. Ensign; Rhiju Das; Vijay S. Pande (2011). "Quantitative comparison of villin headpiece subdomain simulations and triplet–triplet energy transfer experiments". Proceedings of the National Academy of Sciences. 108 (31): 12734–9. Bibcode:2011PNAS..10812734B. doi:10.1073/pnas.1010880108. PMC 3150881. PMID 21768345.
Timothy H. Click; Debabani Ganguly; Jianhan Chen (2010). "Intrinsically Disordered Proteins in a Physics-Based World". International Journal of Molecular Sciences. 11 (12): 919–27. doi:10.3390/ijms11125292. PMC 3100817. PMID 21614208.
Vittorio Bellotti; Monica Stoppini (2009). "Protein Misfolding Diseases" (PDF). The Open Biology Journal. 2 (2): 228–234. doi:10.2174/1874196700902020228 (inactive November 1, 2024). Archived from the original on February 22, 2014.{{cite journal}}: CS1 maint: DOI inactive as of November 2024 (link) CS1 maint: bot: original URL status unknown (link)
Fred E. Cohen; Jeffery W. Kelly (2003). "Therapeutic approaches to protein misfolding diseases". Nature (review). 426 (6968): 905–9. Bibcode:2003Natur.426..905C. doi:10.1038/nature02265. PMID 14685252. S2CID 4421600.
Chun Song; Shen Lim; Joo Tong (2009). "Recent advances in computer-aided drug design". Briefings in Bioinformatics (review). 10 (5): 579–91. doi:10.1093/bib/bbp023. PMID 19433475.
Del Lucent; V. Vishal; Vijay S. Pande (2007). "Protein folding under confinement: A role for solvent". Proceedings of the National Academy of Sciences of the United States of America. 104 (25): 10430–10434. Bibcode:2007PNAS..10410430L. doi:10.1073/pnas.0608256104. PMC 1965530. PMID 17563390.
Vincent A. Voelz; Vijay R. Singh; William J. Wedemeyer; Lisa J. Lapidus; Vijay S. Pande (2010). "Unfolded-State Dynamics and Structure of Protein L Characterized by Simulation and Experiment". Journal of the American Chemical Society. 132 (13): 4702–4709. doi:10.1021/ja908369h. PMC 2853762. PMID 20218718.
Caroline Hadley (2004). "Biologists think bigger". EMBO Reports. 5 (3): 236–238. doi:10.1038/sj.embor.7400108. PMC 1299019. PMID 14993921.
Pronk, Sander; Larsson, Per; Pouya, Iman; Bowman, Gregory R.; Haque, Imran S.; Beauchamp, Kyle; Hess, Berk; Pande, Vijay S.; Kasson, Peter M.; Lindahl, Erik (November 12, 2011). "Copernicus: a new paradigm for parallel adaptive molecular dynamics". 2011 International Conference for High Performance Computing, Networking, Storage and Analysis. ACM: 1–10. doi:10.1145/2063384.2063465. ISBN 978-1-4503-0771-0.{{cite journal}}: CS1 maint: date and year (link)
G Brent Irvine; Omar M El-Agnaf; Ganesh M Shankar; Dominic M Walsh (2008). "Protein Aggregation in the Brain: The Molecular Basis for Alzheimer's and Parkinson's Diseases". Molecular Medicine (review). 14 (7–8): 451–464. doi:10.2119/2007-00100.Irvine. PMC 2274891. PMID 18368143.
Claudio Soto; Lisbell D. Estrada (2008). "Protein Misfolding and Neurodegeneration". Archives of Neurology (review). 65 (2): 184–189. doi:10.1001/archneurol.2007.56. PMID 18268186.
Robin Roychaudhuri; Mingfeng Yang; Minako M. Hoshi; David B. Teplow (2008). "Amyloid β-Protein Assembly and Alzheimer Disease". Journal of Biological Chemistry. 284 (8): 4749–53. doi:10.1074/jbc.R800036200. PMC 3837440. PMID 18845536.
Nicholas W. Kelley; V. Vishal; Grant A. Krafft; Vijay S. Pande. (2008). "Simulating oligomerization at experimental concentrations and long timescales: A Markov state model approach". Journal of Chemical Physics. 129 (21): 214707. Bibcode:2008JChPh.129u4707K. doi:10.1063/1.3010881. PMC 2674793. PMID 19063575.
P. Novick, J. Rajadas, C.W. Liu, N. W. Kelley, M. Inayathullah, and V. S. Pande (2011). Buehler, Markus J. (ed.). "Rationally Designed Turn Promoting Mutation in the Amyloid-β Peptide Sequence Stabilizes Oligomers in Solution". PLOS ONE. 6 (7): e21776. Bibcode:2011PLoSO...621776R. doi:10.1371/journal.pone.0021776. PMC 3142112. PMID 21799748.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Aabgeena Naeem; Naveed Ahmad Fazili (2011). "Defective Protein Folding and Aggregation as the Basis of Neurodegenerative Diseases: The Darker Aspect of Proteins". Cell Biochemistry and Biophysics (review). 61 (2): 237–50. doi:10.1007/s12013-011-9200-x. PMID 21573992. S2CID 22622999.
Gregory R Bowman; Xuhui Huang; Vijay S Pande (2010). "Network models for molecular kinetics and their initial applications to human health". Cell Research (review). 20 (6): 622–630. doi:10.1038/cr.2010.57. PMC 4441225. PMID 20421891.
Paul A. Novick; Dahabada H. Lopes; Kim M. Branson; Alexandra Esteras-Chopo; Isabella A. Graef; Gal Bitan; Vijay S. Pande (2012). "Design of β-Amyloid Aggregation Inhibitors from a Predicted Structural Motif". Journal of Medicinal Chemistry. 55 (7): 3002–10. doi:10.1021/jm201332p. PMC 3766731. PMID 22420626.
Walker FO (2007). "Huntington's disease". Lancet. 369 (9557): 218–28 [220]. doi:10.1016/S0140-6736(07)60111-1. PMID 17240289. S2CID 46151626.
Nicholas W. Kelley; Xuhui Huang; Stephen Tam; Christoph Spiess; Judith Frydman; Vijay S. Pande (2009). "The predicted structure of the headpiece of the Huntingtin protein and its implications on Huntingtin aggregation". Journal of Molecular Biology. 388 (5): 919–27. doi:10.1016/j.jmb.2009.01.032. PMC 2677131. PMID 19361448.
Susan W Liebman; Stephen C Meredith (2010). "Protein folding: Sticky N17 speeds huntingtin pile-up". Nature Chemical Biology. 6 (1): 7–8. doi:10.1038/nchembio.279. PMID 20016493.
M Hollstein; D Sidransky; B Vogelstein; CC Harris (1991). "p53 mutations in human cancers". Science. 253 (5015): 49–53. Bibcode:1991Sci...253...49H. doi:10.1126/science.1905840. PMID 1905840. S2CID 38527914.
L. T. Chong; C. D. Snow; Y. M. Rhee; V. S. Pande. (2004). "Dimerization of the p53 Oligomerization Domain: Identification of a Folding Nucleus by Molecular Dynamics Simulations". Journal of Molecular Biology. 345 (4): 869–878. CiteSeerX 10.1.1.132.1174. doi:10.1016/j.jmb.2004.10.083. PMID 15588832.
Lillian T. Chong; William C. Swope; Jed W. Pitera; Vijay S. Pande (2005). "Kinetic Computational Alanine Scanning: Application to p53 Oligomerization". Journal of Molecular Biology. 357 (3): 1039–1049. doi:10.1016/j.jmb.2005.12.083. PMID 16457841. S2CID 16156007.
Almeida MB, do Nascimento JL, Herculano AM, Crespo-López ME (2011). "Molecular chaperones: toward new therapeutic tools". Journal of Molecular Biology (review). 65 (4): 239–43. doi:10.1016/j.biopha.2011.04.025. PMID 21737228.
Aron M. Levin; Darren L. Bates; Aaron M. Ring; Carsten Krieg; Jack T. Lin; Leon Su; Ignacio Moraga; Miro E. Raeber; Gregory R. Bowman; Paul Novick; Vijay S. Pande; C. Garrison Fathman; Onur Boyman; K. Christopher Garcia (2012). "Exploiting a natural conformational switch to engineer an interleukin-2 'superkine'". Nature. 484 (7395): 529–33. Bibcode:2012Natur.484..529L. doi:10.1038/nature10975. PMC 3338870. PMID 22446627.
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Sanghyun Park; Randall J. Radmer; Teri E. Klein; Vijay S. Pande (2005). "A New Set of Molecular Mechanics Parameters for Hydroxyproline and Its Use in Molecular Dynamics Simulations of Collagen-Like Peptides". Journal of Computational Chemistry. 26 (15): 1612–1616. CiteSeerX 10.1.1.142.6781. doi:10.1002/jcc.20301. PMID 16170799. S2CID 13051327.
Hana Robson Marsden; Itsuro Tomatsu; Alexander Kros (2011). "Model systems for membrane fusion". Chemical Society Reviews (review). 40 (3): 1572–1585. doi:10.1039/c0cs00115e. PMID 21152599.
Peter M. Kasson; Afra Zomorodian; Sanghyun Park; Nina Singhal; Leonidas J. Guibas; Vijay S. Pande (2007). "Persistent voids: a new structural metric for membrane fusion". Bioinformatics. 23 (14): 1753–1759. doi:10.1093/bioinformatics/btm250. PMID 17488753.
Peter M. Kasson; Daniel L. Ensign; Vijay S. Pande (2009). "Combining Molecular Dynamics with Bayesian Analysis To Predict and Evaluate Ligand-Binding Mutations in Influenza Hemagglutinin". Journal of the American Chemical Society. 131 (32): 11338–11340. doi:10.1021/ja904557w. PMC 2737089. PMID 19637916.
Peter M. Kasson; Vijay S. Pande (2009). "Combining mutual information with structural analysis to screen for functionally important residues in influenza hemagglutinin". Pacific Symposium on Biocomputing: 492–503. doi:10.1142/9789812836939_0047. ISBN 978-981-283-692-2. PMC 2811693. PMID 19209725.
Guha Jayachandran; M. R. Shirts; S. Park; V. S. Pande (2006). "Parallelized-Over-Parts Computation of Absolute Binding Free Energy with Docking and Molecular Dynamics". Journal of Chemical Physics. 125 (8): 084901. Bibcode:2006JChPh.125h4901J. doi:10.1063/1.2221680. PMID 16965051.
Gregory R. Bowman; Phillip L. Geissler (July 2012). "Equilibrium fluctuations of a single folded protein reveal a multitude of potential cryptic allosteric sites". PNAS. 109 (29): 11681–6. Bibcode:2012PNAS..10911681B. doi:10.1073/pnas.1209309109. PMC 3406870. PMID 22753506.
Paula M. Petrone; Christopher D. Snow; Del Lucent; Vijay S. Pande (2008). "Side-chain recognition and gating in the ribosome exit tunnel". Proceedings of the National Academy of Sciences. 105 (43): 16549–54. Bibcode:2008PNAS..10516549P. doi:10.1073/pnas.0801795105. PMC 2575457. PMID 18946046.
Raddick, M. Jordan; Bracey, Georgia; Gay, Pamela L.; Lintott, Chris J.; Murray, Phil; Schawinski, Kevin; Szalay, Alexander S.; Vandenberg, Jan (December 2010). "Galaxy Zoo: Exploring the Motivations of Citizen Science Volunteers". Astronomy Education Review. 9 (1): 010103. arXiv:0909.2925. Bibcode:2010AEdRv...9a0103R. doi:10.3847/AER2009036. S2CID 118372704.
Nov, Oded; Arazy, Ofer; Anderson, David (2011). "Dusting for science". Proceedings of the 2011 iConference. IConference '11. Seattle, Washington: ACM Press. pp. 68–74. doi:10.1145/1940761.1940771. ISBN 9781450301213. S2CID 12219985.
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Adam Beberg; Daniel Ensign; Guha Jayachandran; Siraj Khaliq; Vijay Pande (2009). "Folding@home: Lessons from eight years of volunteer distributed computing" (PDF). 2009 IEEE International Symposium on Parallel & Distributed Processing. pp. 1–8. doi:10.1109/IPDPS.2009.5160922. ISBN 978-1-4244-3751-1. ISSN 1530-2075. S2CID 15677970.
Carsten Kutzner; David Van Der Spoel; Martin Fechner; Erik Lindahl; Udo W. Schmitt; Bert L. De Groot; Helmut Grubmüller (2007). "Speeding up parallel GROMACS on high-latency networks". Journal of Computational Chemistry. 28 (12): 2075–2084. doi:10.1002/jcc.20703. hdl:11858/00-001M-0000-0012-E29A-0. PMID 17405124. S2CID 519769.
Berk Hess; Carsten Kutzner; David van der Spoel; Erik Lindahl (2008). "GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation". Journal of Chemical Theory and Computation. 4 (3): 435–447. doi:10.1021/ct700301q. hdl:11858/00-001M-0000-0012-DDBF-0. PMID 26620784. S2CID 1142192.
M. S. Friedrichs; P. Eastman; V. Vaidyanathan; M. Houston; S. LeGrand; A. L. Beberg; D. L. Ensign; C. M. Bruns; V. S. Pande (2009). "Accelerating Molecular Dynamic Simulation on Graphics Processing Units". Journal of Computational Chemistry. 30 (6): 864–72. doi:10.1002/jcc.21209. PMC 2724265. PMID 19191337.
Phineus R. L. Markwick; J. Andrew McCammon (2011). "Studying functional dynamics in bio-molecules using accelerated molecular dynamics". Physical Chemistry Chemical Physics. 13 (45): 20053–65. Bibcode:2011PCCP...1320053M. doi:10.1039/C1CP22100K. PMID 22015376.
M. R. Shirts; V. S. Pande. (2000). "Screen Savers of the World, Unite!". Science. 290 (5498): 1903–1904. doi:10.1126/science.290.5498.1903. PMID 17742054. S2CID 2854586.
John D. Owens; David Luebke; Naga Govindaraju; Mark Harris; Jens Krüger; Aaron Lefohn; Timothy J. Purcell (2007). "A Survey of General-Purpose Computation on Graphics Hardware". Computer Graphics Forum. 26 (1): 80–113. CiteSeerX 10.1.1.215.426. doi:10.1111/j.1467-8659.2007.01012.x. S2CID 62756490.
P. Eastman; V. S. Pande (2010). "OpenMM: A Hardware-Independent Framework for Molecular Simulations". Computing in Science and Engineering. 12 (4): 34–39. Bibcode:2010CSE....12d..34E. doi:10.1109/MCSE.2010.27. ISSN 1521-9615. PMC 4486654. PMID 26146490.
I. Haque; V. S. Pande (2010). "Hard Data on Soft Errors: A Large-Scale Assessment of Real-World Error Rates in GPGPU". 2010 10th IEEE/ACM International Conference on Cluster, Cloud and Grid Computing. pp. 691–696. arXiv:0910.0505. doi:10.1109/CCGRID.2010.84. ISBN 978-1-4244-6987-1. S2CID 10723933.
Edgar Luttmann; Daniel L. Ensign; Vishal Vaidyanathan; Mike Houston; Noam Rimon; Jeppe Øland; Guha Jayachandran; Mark Friedrichs; Vijay S. Pande (2008). "Accelerating Molecular Dynamic Simulation on the Cell processor and PlayStation 3". Journal of Computational Chemistry. 30 (2): 268–274. doi:10.1002/jcc.21054. PMID 18615421. S2CID 33047431.
Daniel L. Ensign; Peter M. Kasson; Vijay S. Pande (2007). "Heterogeneity Even at the Speed Limit of Folding: Large-scale Molecular Dynamics Study of a Fast-folding Variant of the Villin Headpiece". Journal of Molecular Biology. 374 (3): 806–816. doi:10.1016/j.jmb.2007.09.069. PMC 3689540. PMID 17950314.
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Gregory R. Bowman; Vijay S. Pande (2009). "Simulated tempering yields insight into the low-resolution Rosetta scoring function". Proteins: Structure, Function, and Bioinformatics. 74 (3): 777–88. doi:10.1002/prot.22210. PMID 18767152. S2CID 29895006.
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Thomas J. Lane; Gregory R. Bowman; Kyle A Beauchamp; Vincent Alvin Voelz; Vijay S. Pande (2011). "Markov State Model Reveals Folding and Functional Dynamics in Ultra-Long MD Trajectories". Journal of the American Chemical Society. 133 (45): 18413–9. doi:10.1021/ja207470h. PMC 3227799. PMID 21988563.
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News 12 Long Island 2020: "Since the start of the COVID-19 pandemic, Folding@home has seen a significant surge in downloads, a clear indication that people around the world are concerned about doing their part to help researchers find a remedy to this virus," said Dr. Sina Rabbany, dean of the DeMatteis School." News 12 Long Island (May 13, 2020), Hofstra University lends resource lab for worldwide COVID-19 research, retrieved May 24, 2020{{citation}}: CS1 maint: numeric names: authors list (link)

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