GROMOS (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "GROMOS" in English language version.

refsWebsite

Global rank English rank

10doi.org

2^nd place

7nih.gov

4^th place

5worldcat.org

5^th place

3acs.org

1,248^th place

1,104^th place

2ethz.ch

2,224^th place

1,900^th place

1web.archive.org

1^st place

1cecam.org

low place

1rsc.org

2,020^th place

1,872^nd place

1handle.net

102^nd place

76^th place

acs.org (Global: 1,248^th place; English: 1,104^th place)

pubs.acs.org

Lier, Bettina; Poliak, Peter; Marquetand, Philipp; Westermayr, Julia; Oostenbrink, Chris (2022-05-05). "BuRNN: Buffer Region Neural Network Approach for Polarizable-Embedding Neural Network/Molecular Mechanics Simulations". The Journal of Physical Chemistry Letters. 13 (17): 3812–3818. doi:10.1021/acs.jpclett.2c00654. ISSN 1948-7185. PMC 9082612. PMID 35467875.
Gracia Carmona, Oriol; Gillhofer, Michael; Tomasiak, Lisa; De Ruiter, Anita; Oostenbrink, Chris (2023-06-13). "Accelerated Enveloping Distribution Sampling to Probe the Presence of Water Molecules". Journal of Chemical Theory and Computation. 19 (11): 3379–3390. doi:10.1021/acs.jctc.3c00109. ISSN 1549-9618. PMC 10269333. PMID 37167545.
Gracia Carmona, Oriol; Oostenbrink, Chris (2023-09-26). "Flexible Gaussian Accelerated Molecular Dynamics to Enhance Biological Sampling". Journal of Chemical Theory and Computation. 19 (18): 6521–6531. doi:10.1021/acs.jctc.3c00619. ISSN 1549-9618. PMC 10536968. PMID 37649349.

cecam.org (Global: low place; English: low place)

"Berni J. Alder CECAM Prize". Centre européen de calcul atomique et moléculaire. Archived from the original on 13 April 2016. Retrieved 25 April 2016.

doi.org (Global: 2^nd place; English: 2^nd place)

Christen, M; Hünenberger, PH; Bakowies, D; et al. (December 2005). "The GROMOS software for biomolecular simulation: GROMOS05". J Comput Chem. 26: 1719–51. doi:10.1002/jcc.20303. PMID 16211540.
Kubincová, Alžbeta; Riniker, Sereina; Hünenberger, Philippe H. (2020). "Reaction-field electrostatics in molecular dynamics simulations: development of a conservative scheme compatible with an atomic cutoff". Physical Chemistry Chemical Physics. 22 (45): 26419–26437. doi:10.1039/D0CP03835K. hdl:20.500.11850/454775. ISSN 1463-9076.
Lier, Bettina; Poliak, Peter; Marquetand, Philipp; Westermayr, Julia; Oostenbrink, Chris (2022-05-05). "BuRNN: Buffer Region Neural Network Approach for Polarizable-Embedding Neural Network/Molecular Mechanics Simulations". The Journal of Physical Chemistry Letters. 13 (17): 3812–3818. doi:10.1021/acs.jpclett.2c00654. ISSN 1948-7185. PMC 9082612. PMID 35467875.
Gracia Carmona, Oriol; Gillhofer, Michael; Tomasiak, Lisa; De Ruiter, Anita; Oostenbrink, Chris (2023-06-13). "Accelerated Enveloping Distribution Sampling to Probe the Presence of Water Molecules". Journal of Chemical Theory and Computation. 19 (11): 3379–3390. doi:10.1021/acs.jctc.3c00109. ISSN 1549-9618. PMC 10269333. PMID 37167545.
Gracia Carmona, Oriol; Oostenbrink, Chris (2023-09-26). "Flexible Gaussian Accelerated Molecular Dynamics to Enhance Biological Sampling". Journal of Chemical Theory and Computation. 19 (18): 6521–6531. doi:10.1021/acs.jctc.3c00619. ISSN 1549-9618. PMC 10536968. PMID 37649349.
Reif, Maria M.; Hünenberger, Philippe H.; Oostenbrink, Chris (2012-05-24). "New Interaction Parameters for Charged Amino Acid Side Chains in the GROMOS Force Field". Journal of Chemical Theory and Computation. 8 (10): 3705–3723. doi:10.1021/ct300156h. ISSN 1549-9618.
Schmid, N.; Eichenberger, A.; Choutko, A.; Riniker, S.; Winger, M.; Mark, A.; van Gunsteren, W. (2011). "Definition and testing of the GROMOS force-field versions 54A7 and 54B7". European Biophysics Journal. 40 (7): 843–856. doi:10.1007/s00249-011-0700-9.
Oostenbrink, C.; Villa, A.; Mark, A. E.; van Gunsteren, W. (2004). "A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6". Journal of Computational Chemistry. 25: 1656–1676. doi:10.1002/Jcc.20090.
Schuler, L. D.; Daura, X.; van Gusteren, W. F. "An improved GROMOS96 force field for aliphatic hydrocarbons in the condensed phase". Journal of Computational Chemistry. 22 (11): 1205–1218. doi:10.1002/jcc.1078.
Soares, T. A.; Hünenberger, P. H.; Kastenholz, M. A.; Kräutler, V.; Lenz, T.; Lins, R. D.; Oostenbrink, C.; van Gunsteren, W. F. (2005). "An improved nucleic acid parameter set for the GROMOS force field". Journal of Computational Chemistry. 26 (7): 725–737. doi:10.1002/jcc.20193.

ethz.ch (Global: 2,224^th place; English: 1,900^th place)

igc.ethz.ch

Computer-Aided Chemistry Group, ETH Zurich

lpc.ethz.ch

Laboratory for Physical Chemistry, ETH Zurich

handle.net (Global: 102^nd place; English: 76^th place)

hdl.handle.net

Kubincová, Alžbeta; Riniker, Sereina; Hünenberger, Philippe H. (2020). "Reaction-field electrostatics in molecular dynamics simulations: development of a conservative scheme compatible with an atomic cutoff". Physical Chemistry Chemical Physics. 22 (45): 26419–26437. doi:10.1039/D0CP03835K. hdl:20.500.11850/454775. ISSN 1463-9076.

nih.gov (Global: 4^th place; English: 4^th place)

pubmed.ncbi.nlm.nih.gov

Christen, M; Hünenberger, PH; Bakowies, D; et al. (December 2005). "The GROMOS software for biomolecular simulation: GROMOS05". J Comput Chem. 26: 1719–51. doi:10.1002/jcc.20303. PMID 16211540.
Lier, Bettina; Poliak, Peter; Marquetand, Philipp; Westermayr, Julia; Oostenbrink, Chris (2022-05-05). "BuRNN: Buffer Region Neural Network Approach for Polarizable-Embedding Neural Network/Molecular Mechanics Simulations". The Journal of Physical Chemistry Letters. 13 (17): 3812–3818. doi:10.1021/acs.jpclett.2c00654. ISSN 1948-7185. PMC 9082612. PMID 35467875.
Gracia Carmona, Oriol; Gillhofer, Michael; Tomasiak, Lisa; De Ruiter, Anita; Oostenbrink, Chris (2023-06-13). "Accelerated Enveloping Distribution Sampling to Probe the Presence of Water Molecules". Journal of Chemical Theory and Computation. 19 (11): 3379–3390. doi:10.1021/acs.jctc.3c00109. ISSN 1549-9618. PMC 10269333. PMID 37167545.
Gracia Carmona, Oriol; Oostenbrink, Chris (2023-09-26). "Flexible Gaussian Accelerated Molecular Dynamics to Enhance Biological Sampling". Journal of Chemical Theory and Computation. 19 (18): 6521–6531. doi:10.1021/acs.jctc.3c00619. ISSN 1549-9618. PMC 10536968. PMID 37649349.

ncbi.nlm.nih.gov

Lier, Bettina; Poliak, Peter; Marquetand, Philipp; Westermayr, Julia; Oostenbrink, Chris (2022-05-05). "BuRNN: Buffer Region Neural Network Approach for Polarizable-Embedding Neural Network/Molecular Mechanics Simulations". The Journal of Physical Chemistry Letters. 13 (17): 3812–3818. doi:10.1021/acs.jpclett.2c00654. ISSN 1948-7185. PMC 9082612. PMID 35467875.
Gracia Carmona, Oriol; Gillhofer, Michael; Tomasiak, Lisa; De Ruiter, Anita; Oostenbrink, Chris (2023-06-13). "Accelerated Enveloping Distribution Sampling to Probe the Presence of Water Molecules". Journal of Chemical Theory and Computation. 19 (11): 3379–3390. doi:10.1021/acs.jctc.3c00109. ISSN 1549-9618. PMC 10269333. PMID 37167545.
Gracia Carmona, Oriol; Oostenbrink, Chris (2023-09-26). "Flexible Gaussian Accelerated Molecular Dynamics to Enhance Biological Sampling". Journal of Chemical Theory and Computation. 19 (18): 6521–6531. doi:10.1021/acs.jctc.3c00619. ISSN 1549-9618. PMC 10536968. PMID 37649349.

rsc.org (Global: 2,020^th place; English: 1,872^nd place)

xlink.rsc.org

Kubincová, Alžbeta; Riniker, Sereina; Hünenberger, Philippe H. (2020). "Reaction-field electrostatics in molecular dynamics simulations: development of a conservative scheme compatible with an atomic cutoff". Physical Chemistry Chemical Physics. 22 (45): 26419–26437. doi:10.1039/D0CP03835K. hdl:20.500.11850/454775. ISSN 1463-9076.

web.archive.org (Global: 1^st place; English: 1^st place)

"Berni J. Alder CECAM Prize". Centre européen de calcul atomique et moléculaire. Archived from the original on 13 April 2016. Retrieved 25 April 2016.

worldcat.org (Global: 5^th place; English: 5^th place)

search.worldcat.org

Kubincová, Alžbeta; Riniker, Sereina; Hünenberger, Philippe H. (2020). "Reaction-field electrostatics in molecular dynamics simulations: development of a conservative scheme compatible with an atomic cutoff". Physical Chemistry Chemical Physics. 22 (45): 26419–26437. doi:10.1039/D0CP03835K. hdl:20.500.11850/454775. ISSN 1463-9076.
Lier, Bettina; Poliak, Peter; Marquetand, Philipp; Westermayr, Julia; Oostenbrink, Chris (2022-05-05). "BuRNN: Buffer Region Neural Network Approach for Polarizable-Embedding Neural Network/Molecular Mechanics Simulations". The Journal of Physical Chemistry Letters. 13 (17): 3812–3818. doi:10.1021/acs.jpclett.2c00654. ISSN 1948-7185. PMC 9082612. PMID 35467875.
Gracia Carmona, Oriol; Gillhofer, Michael; Tomasiak, Lisa; De Ruiter, Anita; Oostenbrink, Chris (2023-06-13). "Accelerated Enveloping Distribution Sampling to Probe the Presence of Water Molecules". Journal of Chemical Theory and Computation. 19 (11): 3379–3390. doi:10.1021/acs.jctc.3c00109. ISSN 1549-9618. PMC 10269333. PMID 37167545.
Gracia Carmona, Oriol; Oostenbrink, Chris (2023-09-26). "Flexible Gaussian Accelerated Molecular Dynamics to Enhance Biological Sampling". Journal of Chemical Theory and Computation. 19 (18): 6521–6531. doi:10.1021/acs.jctc.3c00619. ISSN 1549-9618. PMC 10536968. PMID 37649349.
Reif, Maria M.; Hünenberger, Philippe H.; Oostenbrink, Chris (2012-05-24). "New Interaction Parameters for Charged Amino Acid Side Chains in the GROMOS Force Field". Journal of Chemical Theory and Computation. 8 (10): 3705–3723. doi:10.1021/ct300156h. ISSN 1549-9618.

GROMOS (English Wikipedia)

acs.org (Global: 1,248th place; English: 1,104th place)