Gap penalty (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Gap penalty" in English language version.

refsWebsite

Global rank English rank

4^th place

2^nd place

low place

1,687^th place

1,074^th place

1^st place

low place

40^th place

58^th place

11^th place

8^th place

biogem.org

"Gap Penalty" (PDF). Algorithms for Molecular Biology. 2006-01-01. Archived from the original (PDF) on 2013-06-26. Retrieved 2014-09-13.

Lesk, Arthur M (2013-07-26). "bioinformatics". Encyclopædia Britannica. Retrieved 2014-09-12.

Carroll, Ridge, Clement, Snell, Hyrum , Perry, Mark, Quinn (January 1, 2007). "Effects of Gap Open and Gap Extension Penalties". International Journal of Bioinformatics Research and Applications. Retrieved 2014-09-09.{{cite journal}}: CS1 maint: multiple names: authors list (link)

Vingron, M.; Waterman, M. S. (1994). "Sequence alignment and penalty choice. Review of concepts, case studies and implications". Journal of Molecular Biology. 235 (1): 1–12. doi:10.1016/S0022-2836(05)80006-3. PMID 8289235.
Garcia-Diaz, Miguel (2006). "Mechanism of a genetic glissando: structural biology of indel mutations". Trends in Biochemical Sciences. 31 (4): 206–214. doi:10.1016/j.tibs.2006.02.004. PMID 16545956.
Cartwright, Reed (2006-12-05). "Logarithmic gap costs decrease alignment accuracy". BMC Bioinformatics. 7: 527. doi:10.1186/1471-2105-7-527. PMC 1770940. PMID 17147805.
Wang C, Yan RX, Wang XF, Si JN, Zhang Z (12 October 2011). "Comparison of linear gap penalties and profile-based variable gap penalties in profile-profile alignments". Comput Biol Chem. 35 (5): 308–318. doi:10.1016/j.compbiolchem.2011.07.006. PMID 22000802.
Wrabl JO, Grishin NV (1 January 2004). "Gaps in structurally similar proteins: towards improvement of multiple sequence alignment". Proteins. 54 (1): 71–87. doi:10.1002/prot.10508. PMID 14705025. S2CID 20474119.

Vingron, M.; Waterman, M. S. (1994). "Sequence alignment and penalty choice. Review of concepts, case studies and implications". Journal of Molecular Biology. 235 (1): 1–12. doi:10.1016/S0022-2836(05)80006-3. PMID 8289235.
Garcia-Diaz, Miguel (2006). "Mechanism of a genetic glissando: structural biology of indel mutations". Trends in Biochemical Sciences. 31 (4): 206–214. doi:10.1016/j.tibs.2006.02.004. PMID 16545956.
Cartwright, Reed (2006-12-05). "Logarithmic gap costs decrease alignment accuracy". BMC Bioinformatics. 7: 527. doi:10.1186/1471-2105-7-527. PMC 1770940. PMID 17147805.
Wang C, Yan RX, Wang XF, Si JN, Zhang Z (12 October 2011). "Comparison of linear gap penalties and profile-based variable gap penalties in profile-profile alignments". Comput Biol Chem. 35 (5): 308–318. doi:10.1016/j.compbiolchem.2011.07.006. PMID 22000802.
Wrabl JO, Grishin NV (1 January 2004). "Gaps in structurally similar proteins: towards improvement of multiple sequence alignment". Proteins. 54 (1): 71–87. doi:10.1002/prot.10508. PMID 14705025. S2CID 20474119.

"Glossary". Rosalind. Rosalind Team. Retrieved 2021-05-20.
"Glossary - Constant Gap Penalty". Rosalind. Rosalind Team. 12 Aug 2014. Retrieved 12 Aug 2014.
"Global Alignment with Scoring Matrix and Affine Gap Penalty". Rosalind. Rosalind Team. 2012-07-02. Retrieved 2014-09-12.

Wrabl JO, Grishin NV (1 January 2004). "Gaps in structurally similar proteins: towards improvement of multiple sequence alignment". Proteins. 54 (1): 71–87. doi:10.1002/prot.10508. PMID 14705025. S2CID 20474119.

"Gap Penalty" (PDF). Algorithms for Molecular Biology. 2006-01-01. Archived from the original (PDF) on 2013-06-26. Retrieved 2014-09-13.