Gap penalty (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Gap penalty" in English language version.

refsWebsite

Global rank English rank

7nih.gov

4^th place

5doi.org

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3rosalind.info

low place

1byu.edu

1,687^th place

1,074^th place

1web.archive.org

1^st place

1biogem.org

low place

1britannica.com

40^th place

58^th place

1semanticscholar.org

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biogem.org (Global: low place; English: low place)

"Gap Penalty" (PDF). Algorithms for Molecular Biology. 2006-01-01. Archived from the original (PDF) on 2013-06-26. Retrieved 2014-09-13.

britannica.com (Global: 40^th place; English: 58^th place)

Lesk, Arthur M (2013-07-26). "bioinformatics". Encyclopædia Britannica. Retrieved 2014-09-12.

byu.edu (Global: 1,687^th place; English: 1,074^th place)

scholarsarchive.byu.edu

Carroll, Ridge, Clement, Snell, Hyrum , Perry, Mark, Quinn (January 1, 2007). "Effects of Gap Open and Gap Extension Penalties". International Journal of Bioinformatics Research and Applications. Retrieved 2014-09-09.{{cite journal}}: CS1 maint: multiple names: authors list (link)

doi.org (Global: 2^nd place; English: 2^nd place)

Vingron, M.; Waterman, M. S. (1994). "Sequence alignment and penalty choice. Review of concepts, case studies and implications". Journal of Molecular Biology. 235 (1): 1–12. doi:10.1016/S0022-2836(05)80006-3. PMID 8289235.
Garcia-Diaz, Miguel (2006). "Mechanism of a genetic glissando: structural biology of indel mutations". Trends in Biochemical Sciences. 31 (4): 206–214. doi:10.1016/j.tibs.2006.02.004. PMID 16545956.
Cartwright, Reed (2006-12-05). "Logarithmic gap costs decrease alignment accuracy". BMC Bioinformatics. 7: 527. doi:10.1186/1471-2105-7-527. PMC 1770940. PMID 17147805.
Wang C, Yan RX, Wang XF, Si JN, Zhang Z (12 October 2011). "Comparison of linear gap penalties and profile-based variable gap penalties in profile-profile alignments". Comput Biol Chem. 35 (5): 308–318. doi:10.1016/j.compbiolchem.2011.07.006. PMID 22000802.
Wrabl JO, Grishin NV (1 January 2004). "Gaps in structurally similar proteins: towards improvement of multiple sequence alignment". Proteins. 54 (1): 71–87. doi:10.1002/prot.10508. PMID 14705025. S2CID 20474119.

nih.gov (Global: 4^th place; English: 4^th place)

pubmed.ncbi.nlm.nih.gov

Vingron, M.; Waterman, M. S. (1994). "Sequence alignment and penalty choice. Review of concepts, case studies and implications". Journal of Molecular Biology. 235 (1): 1–12. doi:10.1016/S0022-2836(05)80006-3. PMID 8289235.
Garcia-Diaz, Miguel (2006). "Mechanism of a genetic glissando: structural biology of indel mutations". Trends in Biochemical Sciences. 31 (4): 206–214. doi:10.1016/j.tibs.2006.02.004. PMID 16545956.
Cartwright, Reed (2006-12-05). "Logarithmic gap costs decrease alignment accuracy". BMC Bioinformatics. 7: 527. doi:10.1186/1471-2105-7-527. PMC 1770940. PMID 17147805.
Wang C, Yan RX, Wang XF, Si JN, Zhang Z (12 October 2011). "Comparison of linear gap penalties and profile-based variable gap penalties in profile-profile alignments". Comput Biol Chem. 35 (5): 308–318. doi:10.1016/j.compbiolchem.2011.07.006. PMID 22000802.
Wrabl JO, Grishin NV (1 January 2004). "Gaps in structurally similar proteins: towards improvement of multiple sequence alignment". Proteins. 54 (1): 71–87. doi:10.1002/prot.10508. PMID 14705025. S2CID 20474119.

ncbi.nlm.nih.gov

"BLAST substitution matrices". NCBI. Retrieved 2012-11-27.
Cartwright, Reed (2006-12-05). "Logarithmic gap costs decrease alignment accuracy". BMC Bioinformatics. 7: 527. doi:10.1186/1471-2105-7-527. PMC 1770940. PMID 17147805.

rosalind.info (Global: low place; English: low place)

"Glossary". Rosalind. Rosalind Team. Retrieved 2021-05-20.
"Glossary - Constant Gap Penalty". Rosalind. Rosalind Team. 12 Aug 2014. Retrieved 12 Aug 2014.
"Global Alignment with Scoring Matrix and Affine Gap Penalty". Rosalind. Rosalind Team. 2012-07-02. Retrieved 2014-09-12.

semanticscholar.org (Global: 11^th place; English: 8^th place)

api.semanticscholar.org

Wrabl JO, Grishin NV (1 January 2004). "Gaps in structurally similar proteins: towards improvement of multiple sequence alignment". Proteins. 54 (1): 71–87. doi:10.1002/prot.10508. PMID 14705025. S2CID 20474119.

web.archive.org (Global: 1^st place; English: 1^st place)

"Gap Penalty" (PDF). Algorithms for Molecular Biology. 2006-01-01. Archived from the original (PDF) on 2013-06-26. Retrieved 2014-09-13.

Gap penalty (English Wikipedia)

biogem.org (Global: low place; English: low place)

britannica.com (Global: 40th place; English: 58th place)

byu.edu (Global: 1,687th place; English: 1,074th place)