Gaussian network model (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Gaussian network model" in English language version.

refsWebsite

Global rank English rank

44nih.gov

4^th place

38doi.org

2^nd place

22harvard.edu

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17^th place

11semanticscholar.org

11^th place

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4arxiv.org

69^th place

59^th place

3researchgate.net

120^th place

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2psu.edu

207^th place

136^th place

2handle.net

102^nd place

76^th place

1worldcat.org

5^th place

1archive.org

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archive.org (Global: 6^th place; English: 6^th place)

Chennubhotla, Chakra; Bahar, Ivet (2006). "Markov Methods for Hierarchical Coarse-Graining of Large Protein Dynamics". Research in Computational Molecular Biology. Lecture Notes in Computer Science. Vol. 3909. pp. 379–393. doi:10.1007/11732990_32. ISBN 978-3-540-33295-4.

arxiv.org (Global: 69^th place; English: 59^th place)

Micheletti, C.; Carloni, P.; Maritan, A. (2004). ""Accurate and efficient description of protein vibrational dynamics " comparing molecular dynamics and gaussian models". Proteins. 55 (3): 635–45. arXiv:cond-mat/0405145. Bibcode:2004cond.mat..5145M. doi:10.1002/prot.20049. PMID 15103627. S2CID 5348611.
Micheletti, C.; Lattanzi, G.; Maritan, A. (2002). "Elastic properties of proteins: insight on the folding process and evolutionary selection of native structures". J. Mol. Biol. 321 (5): 909–21. arXiv:cond-mat/0204400. Bibcode:2002cond.mat..4400M. doi:10.1016/s0022-2836(02)00710-6. PMID 12206770. S2CID 8492131.
Micheletti, C.; et al. (2002). "Crucial stages of protein folding through a solvable model: predicting target sites for enzyme-inhibiting drugs". Protein Science. 11 (8): 1878–87. arXiv:cond-mat/0209325. Bibcode:2002cond.mat..9325M. doi:10.1110/ps.3360102. PMC 2373687. PMID 12142442.
Portman, J.J.; Takada, S.; Wolynes, P.G. (2001). "Microscopic theory of protein folding rates. I. fine structure of the free energy profile and folding routes from a variational approach". J. Chem. Phys. 114 (11): 5069. arXiv:cond-mat/0008454. Bibcode:2001JChPh.114.5069P. doi:10.1063/1.1334662. S2CID 14699178.

doi.org (Global: 2^nd place; English: 2^nd place)

Bahar, I.; Atilgan, A. R.; Erman, B. (1997). "Direct evaluation of thermal fluctuations in protein using a single parameter harmonic potential". Folding & Design. 2 (3): 173–181. doi:10.1016/s1359-0278(97)00024-2. PMID 9218955.
Haliloglu, T. Bahar; Erman, B (1997). "Gaussian dynamics of folded proteins". Phys. Rev. Lett. 79 (16): 3090–3093. Bibcode:1997PhRvL..79.3090H. doi:10.1103/physrevlett.79.3090.
Flory, P.J. (1976). "Statistical thermodynamics of random networks". Proc. R. Soc. Lond. A. 351 (1666): 351. Bibcode:1976RSPSA.351..351F. doi:10.1098/rspa.1976.0146. S2CID 122325882.
Rouse, P.E. (1953). "A Theory of the Linear Viscoelastic Properties of Dilute Solutions of Coiling Polymers". J. Chem. Phys. 21 (7): 1272. Bibcode:1953JChPh..21.1272R. doi:10.1063/1.1699180.
Halle, B (2002). "Flexibility and packing in proteins". Proc. Natl. Acad. Sci. U.S.A. 99 (3): 1274–1279. Bibcode:2002PNAS...99.1274H. doi:10.1073/pnas.032522499. PMC 122180. PMID 11818549.
Bahar, I.; Wallqvist, A.; Covell, D. G.; Jernigan, R.L. (1998). "Correlation between native state hydrogen exchange and cooperative residue fluctuations from a simple model". Biochemistry. 37 (4): 1067–1075. CiteSeerX 10.1.1.551.9055. doi:10.1021/bi9720641. PMID 9454598.
Bahar, I.; Atilgan, A. R.; Demirel, M. C.; Erman, B. (1998). "Vibrational dynamics of proteins: Significance of slow and fast modes in relation to function and stability". Phys. Rev. Lett. 80 (12): 2733–2736. Bibcode:1998PhRvL..80.2733B. doi:10.1103/physrevlett.80.2733. S2CID 1070176.
Kmiecik, Sebastian; Kouza, Maksim; Badaczewska-Dawid, Aleksandra E.; Kloczkowski, Andrzej; Kolinski, Andrzej (2018). "Modeling of Protein Structural Flexibility and Large-Scale Dynamics: Coarse-Grained Simulations and Elastic Network Models". International Journal of Molecular Sciences. 19 (11): 3496. doi:10.3390/ijms19113496. PMC 6274762. PMID 30404229.
Yang, Lei; Song, Guang; Jernigan, Robert L. (2007-08-01). "How well can we understand large-scale protein motions using normal modes of elastic network models?". Biophysical Journal. 93 (3): 920–929. Bibcode:2007BpJ....93..920Y. doi:10.1529/biophysj.106.095927. ISSN 0006-3495. PMC 1913142. PMID 17483178.
Chennubhotla, C; Rader, AJ; Yang, LW; Bahar, I (2005). "Elastic network models for understanding biomolecular machinery: from enzymes to supramolecular assemblies". Phys. Biol. 2 (4): S173–S180. Bibcode:2005PhBio...2S.173C. doi:10.1088/1478-3975/2/4/S12. PMID 16280623. S2CID 28083452.
Zhang, Jinjun (2015). "An optimized cross-linked network model to simulate the linear elastic material response of a smart polymer". Journal of Intelligent Material Systems and Structures. 27 (11): 1461–1475. doi:10.1177/1045389X15595292. S2CID 137709230.
Zhang, Jinjun (2015). "A novel statistical spring-bead based network model for self-sensing smart polymer materials". Smart Materials and Structures. 24 (8) 085022. Bibcode:2015SMaS...24h5022Z. doi:10.1088/0964-1726/24/8/085022. hdl:2286/R.I.35587. S2CID 55578558.
Hinsen, K (1999). "Analysis of domain motions by approximate normal mode calculations". Proteins. 33 (3): 417–429. doi:10.1002/(sici)1097-0134(19981115)33:3<417::aid-prot10>3.0.co;2-8. PMID 9829700. S2CID 33336590.
Rader, AJ.; Anderson, G.; Isin, B.; Khorana, H. G.; Bahar, I.; Klein-Seetharaman, J. (2004). "Identification of core amino acids stabilizing rhodopsin". Proc. Natl. Acad. Sci. U.S.A. 101 (19): 7246–7251. Bibcode:2004PNAS..101.7246R. doi:10.1073/pnas.0401429101. PMC 409904. PMID 15123809.
Kundu, S.; Sorensen, D.C.; Phillips, G.N. Jr (2004). "Automatic domain decomposition of proteins by a Gaussian Network Model". Proteins. 57 (4): 725–733. doi:10.1002/prot.20268. PMID 15478120. S2CID 9600056.
Zhang, Jinjun (2015). "A novel statistical spring-bead based network model for self-sensing smart polymer materials". Smart Materials and Structures. 24 (8) 085022. Bibcode:2015SMaS...24h5022Z. doi:10.1088/0964-1726/24/8/085022. hdl:2286/R.I.35587. S2CID 55578558.
Keskin, O.; et al. (2002). "Relating molecular flexibility to function: a case study of tubulin". Biophys. J. 83 (2): 663–80. Bibcode:2002BpJ....83..663K. doi:10.1016/s0006-3495(02)75199-0. PMC 1302177. PMID 12124255.
Shrivastava, Indira H.; Bahar, Ivet (2006). "Common Mechanism of Pore Opening Shared by Five Different Potassium Channels". Biophys J. 90 (11): 3929–3940. Bibcode:2006BpJ....90.3929S. doi:10.1529/biophysj.105.080093. PMC 1459499. PMID 16533848.
Yang, LW; Bahar, I (2005). "Coupling between Catalytic Site and Collective Dynamics: A requirement for Mechanochemical Activity of Enzymes". Structure. 13 (6): 893–904. doi:10.1016/j.str.2005.03.015. PMC 1489920. PMID 15939021.
Chennubhotla, Chakra; Bahar, Ivet (2006). "Markov Methods for Hierarchical Coarse-Graining of Large Protein Dynamics". Research in Computational Molecular Biology. Lecture Notes in Computer Science. Vol. 3909. pp. 379–393. doi:10.1007/11732990_32. ISBN 978-3-540-33295-4.
Wang, Y. Rader; AJ; Bahar, I.; Jernigan, RL. (2004). "Global Ribosome Motions Revealed with Elastic Network Model". J. Struct. Biol. 147 (3): 302–314. doi:10.1016/j.jsb.2004.01.005. PMID 15450299.
Rader, AJ; Vlad, Daniel; Bahar, Ivet (2005). "Maturation Dynamics of Bacteriophage HK97 Capsid". Structure. 13 (3): 413–21. doi:10.1016/j.str.2004.12.015. PMID 15766543.
Hamacher, K.; Trylska, J.; McCammon, J.A. (2006). "Dependency Map of Proteins in the Small Ribosomal Subunit". PLOS Comput. Biol. 2 (2) e10. Bibcode:2006PLSCB...2...10H. doi:10.1371/journal.pcbi.0020010. PMC 1364506. PMID 16485038.
Ming, D.; et al. (2002). "How to describe protein motion without amino acid sequence and atomic coordinates". Proc. Natl. Acad. Sci. U.S.A. 99 (13): 8620–8625. Bibcode:2002PNAS...99.8620M. doi:10.1073/pnas.082148899. PMC 124334. PMID 12084922.
Tama, F.; Wriggers, W.; Brooks III, C.L. (2002). "Exploring global distortions of biological macromolecules and assemblies from low-resolution structural information and elastic network theory". J. Mol. Biol. 321 (2): 297–305. CiteSeerX 10.1.1.457.8. doi:10.1016/s0022-2836(02)00627-7. PMID 12144786.
Delarue, M.; Dumas, P. (2004). "On the use of low-frequency normal modes to enforce collective movements in refining macromolecular structural models". Proc. Natl. Acad. Sci. U.S.A. 101 (18): 6957–6962. Bibcode:2004PNAS..101.6957D. doi:10.1073/pnas.0400301101. PMC 406448. PMID 15096585.
Micheletti, C.; Carloni, P.; Maritan, A. (2004). ""Accurate and efficient description of protein vibrational dynamics " comparing molecular dynamics and gaussian models". Proteins. 55 (3): 635–45. arXiv:cond-mat/0405145. Bibcode:2004cond.mat..5145M. doi:10.1002/prot.20049. PMID 15103627. S2CID 5348611.
Suhre, K.; Sanejouand, Y.H. (2004). "On the potential of normal mode analysis for solving difficult molecular replacement problems". Acta Crystallogr. D. 60 (4): 796–9. doi:10.1107/s0907444904001982. PMID 15039589.
Zhang, Z.Y.; Shi, Y.Y.; Liu, H.Y. (2003). "Molecular dynamics simulations of peptides and proteins with amplified collective motions". Biophys. J. 84 (6): 3583–93. Bibcode:2003BpJ....84.3583Z. doi:10.1016/s0006-3495(03)75090-5. PMC 1302944. PMID 12770868.
Micheletti, C.; Lattanzi, G.; Maritan, A. (2002). "Elastic properties of proteins: insight on the folding process and evolutionary selection of native structures". J. Mol. Biol. 321 (5): 909–21. arXiv:cond-mat/0204400. Bibcode:2002cond.mat..4400M. doi:10.1016/s0022-2836(02)00710-6. PMID 12206770. S2CID 8492131.
Micheletti, C.; et al. (2002). "Crucial stages of protein folding through a solvable model: predicting target sites for enzyme-inhibiting drugs". Protein Science. 11 (8): 1878–87. arXiv:cond-mat/0209325. Bibcode:2002cond.mat..9325M. doi:10.1110/ps.3360102. PMC 2373687. PMID 12142442.
Portman, J.J.; Takada, S.; Wolynes, P.G. (2001). "Microscopic theory of protein folding rates. I. fine structure of the free energy profile and folding routes from a variational approach". J. Chem. Phys. 114 (11): 5069. arXiv:cond-mat/0008454. Bibcode:2001JChPh.114.5069P. doi:10.1063/1.1334662. S2CID 14699178.
Hamacher, K (2008). "Relating Sequence Evolution of HIV1-Protease to Its Underlying Molecular Mechanics". Gene. 422 (1–2): 30–36. doi:10.1016/j.gene.2008.06.007. PMID 18590806.
Hamacher, K.; McCammon, J.A. (2006). "Computing the amino acid specificity of fluctuations in biomolecular systems". J. Chem. Theory Comput. 2 (3): 873–8. doi:10.1021/ct050247s. PMID 26626694.
Tirion, M.M. (1996). "Large amplitude elastic motions in proteins from a single-parameter, atomic analysis". Phys. Rev. Lett. 77 (9): 1905–1908. Bibcode:1996PhRvL..77.1905T. doi:10.1103/physrevlett.77.1905. PMID 10063201.
Atilgan, AR; Durrell, SR; Jernigan, RL; Demirel, MC; Keskin, O.; Bahar, I. (2001). "Anisotropy of fluctuation dynamics of proteins with an elastic network model". Biophys. J. 80 (1): 505–515. Bibcode:2001BpJ....80..505A. doi:10.1016/s0006-3495(01)76033-x. PMC 1301252. PMID 11159421.
Bakan, A.; Meireles, L. M.; Bahar, I. (2011). "ProDy: protein dynamics inferred from theory and experiments". Bioinformatics. 27 (11): 1575–1577. doi:10.1093/bioinformatics/btr168. PMC 3102222. PMID 21471012.
Bakan, A.; Dutta, A.; Mao, W.; Liu, Y.; Chennubhotla, C.; Lezon, T. R.; Bahar, I. (2014). "Evol and ProDy for bridging protein sequence evolution and structural dynamics". Bioinformatics. 30 (18): 2681–2683. doi:10.1093/bioinformatics/btu336. PMC 4155247. PMID 24849577.

handle.net (Global: 102^nd place; English: 76^th place)

hdl.handle.net

Zhang, Jinjun (2015). "A novel statistical spring-bead based network model for self-sensing smart polymer materials". Smart Materials and Structures. 24 (8) 085022. Bibcode:2015SMaS...24h5022Z. doi:10.1088/0964-1726/24/8/085022. hdl:2286/R.I.35587. S2CID 55578558.
Zhang, Jinjun (2015). "A novel statistical spring-bead based network model for self-sensing smart polymer materials". Smart Materials and Structures. 24 (8) 085022. Bibcode:2015SMaS...24h5022Z. doi:10.1088/0964-1726/24/8/085022. hdl:2286/R.I.35587. S2CID 55578558.

harvard.edu (Global: 18^th place; English: 17^th place)

ui.adsabs.harvard.edu

Haliloglu, T. Bahar; Erman, B (1997). "Gaussian dynamics of folded proteins". Phys. Rev. Lett. 79 (16): 3090–3093. Bibcode:1997PhRvL..79.3090H. doi:10.1103/physrevlett.79.3090.
Flory, P.J. (1976). "Statistical thermodynamics of random networks". Proc. R. Soc. Lond. A. 351 (1666): 351. Bibcode:1976RSPSA.351..351F. doi:10.1098/rspa.1976.0146. S2CID 122325882.
Rouse, P.E. (1953). "A Theory of the Linear Viscoelastic Properties of Dilute Solutions of Coiling Polymers". J. Chem. Phys. 21 (7): 1272. Bibcode:1953JChPh..21.1272R. doi:10.1063/1.1699180.
Halle, B (2002). "Flexibility and packing in proteins". Proc. Natl. Acad. Sci. U.S.A. 99 (3): 1274–1279. Bibcode:2002PNAS...99.1274H. doi:10.1073/pnas.032522499. PMC 122180. PMID 11818549.
Bahar, I.; Atilgan, A. R.; Demirel, M. C.; Erman, B. (1998). "Vibrational dynamics of proteins: Significance of slow and fast modes in relation to function and stability". Phys. Rev. Lett. 80 (12): 2733–2736. Bibcode:1998PhRvL..80.2733B. doi:10.1103/physrevlett.80.2733. S2CID 1070176.
Yang, Lei; Song, Guang; Jernigan, Robert L. (2007-08-01). "How well can we understand large-scale protein motions using normal modes of elastic network models?". Biophysical Journal. 93 (3): 920–929. Bibcode:2007BpJ....93..920Y. doi:10.1529/biophysj.106.095927. ISSN 0006-3495. PMC 1913142. PMID 17483178.
Chennubhotla, C; Rader, AJ; Yang, LW; Bahar, I (2005). "Elastic network models for understanding biomolecular machinery: from enzymes to supramolecular assemblies". Phys. Biol. 2 (4): S173–S180. Bibcode:2005PhBio...2S.173C. doi:10.1088/1478-3975/2/4/S12. PMID 16280623. S2CID 28083452.
Zhang, Jinjun (2015). "A novel statistical spring-bead based network model for self-sensing smart polymer materials". Smart Materials and Structures. 24 (8) 085022. Bibcode:2015SMaS...24h5022Z. doi:10.1088/0964-1726/24/8/085022. hdl:2286/R.I.35587. S2CID 55578558.
Rader, AJ.; Anderson, G.; Isin, B.; Khorana, H. G.; Bahar, I.; Klein-Seetharaman, J. (2004). "Identification of core amino acids stabilizing rhodopsin". Proc. Natl. Acad. Sci. U.S.A. 101 (19): 7246–7251. Bibcode:2004PNAS..101.7246R. doi:10.1073/pnas.0401429101. PMC 409904. PMID 15123809.
Zhang, Jinjun (2015). "A novel statistical spring-bead based network model for self-sensing smart polymer materials". Smart Materials and Structures. 24 (8) 085022. Bibcode:2015SMaS...24h5022Z. doi:10.1088/0964-1726/24/8/085022. hdl:2286/R.I.35587. S2CID 55578558.
Keskin, O.; et al. (2002). "Relating molecular flexibility to function: a case study of tubulin". Biophys. J. 83 (2): 663–80. Bibcode:2002BpJ....83..663K. doi:10.1016/s0006-3495(02)75199-0. PMC 1302177. PMID 12124255.
Shrivastava, Indira H.; Bahar, Ivet (2006). "Common Mechanism of Pore Opening Shared by Five Different Potassium Channels". Biophys J. 90 (11): 3929–3940. Bibcode:2006BpJ....90.3929S. doi:10.1529/biophysj.105.080093. PMC 1459499. PMID 16533848.
Hamacher, K.; Trylska, J.; McCammon, J.A. (2006). "Dependency Map of Proteins in the Small Ribosomal Subunit". PLOS Comput. Biol. 2 (2) e10. Bibcode:2006PLSCB...2...10H. doi:10.1371/journal.pcbi.0020010. PMC 1364506. PMID 16485038.
Ming, D.; et al. (2002). "How to describe protein motion without amino acid sequence and atomic coordinates". Proc. Natl. Acad. Sci. U.S.A. 99 (13): 8620–8625. Bibcode:2002PNAS...99.8620M. doi:10.1073/pnas.082148899. PMC 124334. PMID 12084922.
Delarue, M.; Dumas, P. (2004). "On the use of low-frequency normal modes to enforce collective movements in refining macromolecular structural models". Proc. Natl. Acad. Sci. U.S.A. 101 (18): 6957–6962. Bibcode:2004PNAS..101.6957D. doi:10.1073/pnas.0400301101. PMC 406448. PMID 15096585.
Micheletti, C.; Carloni, P.; Maritan, A. (2004). ""Accurate and efficient description of protein vibrational dynamics " comparing molecular dynamics and gaussian models". Proteins. 55 (3): 635–45. arXiv:cond-mat/0405145. Bibcode:2004cond.mat..5145M. doi:10.1002/prot.20049. PMID 15103627. S2CID 5348611.
Zhang, Z.Y.; Shi, Y.Y.; Liu, H.Y. (2003). "Molecular dynamics simulations of peptides and proteins with amplified collective motions". Biophys. J. 84 (6): 3583–93. Bibcode:2003BpJ....84.3583Z. doi:10.1016/s0006-3495(03)75090-5. PMC 1302944. PMID 12770868.
Micheletti, C.; Lattanzi, G.; Maritan, A. (2002). "Elastic properties of proteins: insight on the folding process and evolutionary selection of native structures". J. Mol. Biol. 321 (5): 909–21. arXiv:cond-mat/0204400. Bibcode:2002cond.mat..4400M. doi:10.1016/s0022-2836(02)00710-6. PMID 12206770. S2CID 8492131.
Micheletti, C.; et al. (2002). "Crucial stages of protein folding through a solvable model: predicting target sites for enzyme-inhibiting drugs". Protein Science. 11 (8): 1878–87. arXiv:cond-mat/0209325. Bibcode:2002cond.mat..9325M. doi:10.1110/ps.3360102. PMC 2373687. PMID 12142442.
Portman, J.J.; Takada, S.; Wolynes, P.G. (2001). "Microscopic theory of protein folding rates. I. fine structure of the free energy profile and folding routes from a variational approach". J. Chem. Phys. 114 (11): 5069. arXiv:cond-mat/0008454. Bibcode:2001JChPh.114.5069P. doi:10.1063/1.1334662. S2CID 14699178.
Tirion, M.M. (1996). "Large amplitude elastic motions in proteins from a single-parameter, atomic analysis". Phys. Rev. Lett. 77 (9): 1905–1908. Bibcode:1996PhRvL..77.1905T. doi:10.1103/physrevlett.77.1905. PMID 10063201.
Atilgan, AR; Durrell, SR; Jernigan, RL; Demirel, MC; Keskin, O.; Bahar, I. (2001). "Anisotropy of fluctuation dynamics of proteins with an elastic network model". Biophys. J. 80 (1): 505–515. Bibcode:2001BpJ....80..505A. doi:10.1016/s0006-3495(01)76033-x. PMC 1301252. PMID 11159421.

nih.gov (Global: 4^th place; English: 4^th place)

pubmed.ncbi.nlm.nih.gov

Bahar, I.; Atilgan, A. R.; Erman, B. (1997). "Direct evaluation of thermal fluctuations in protein using a single parameter harmonic potential". Folding & Design. 2 (3): 173–181. doi:10.1016/s1359-0278(97)00024-2. PMID 9218955.
Halle, B (2002). "Flexibility and packing in proteins". Proc. Natl. Acad. Sci. U.S.A. 99 (3): 1274–1279. Bibcode:2002PNAS...99.1274H. doi:10.1073/pnas.032522499. PMC 122180. PMID 11818549.
Bahar, I.; Wallqvist, A.; Covell, D. G.; Jernigan, R.L. (1998). "Correlation between native state hydrogen exchange and cooperative residue fluctuations from a simple model". Biochemistry. 37 (4): 1067–1075. CiteSeerX 10.1.1.551.9055. doi:10.1021/bi9720641. PMID 9454598.
Kmiecik, Sebastian; Kouza, Maksim; Badaczewska-Dawid, Aleksandra E.; Kloczkowski, Andrzej; Kolinski, Andrzej (2018). "Modeling of Protein Structural Flexibility and Large-Scale Dynamics: Coarse-Grained Simulations and Elastic Network Models". International Journal of Molecular Sciences. 19 (11): 3496. doi:10.3390/ijms19113496. PMC 6274762. PMID 30404229.
Yang, Lei; Song, Guang; Jernigan, Robert L. (2007-08-01). "How well can we understand large-scale protein motions using normal modes of elastic network models?". Biophysical Journal. 93 (3): 920–929. Bibcode:2007BpJ....93..920Y. doi:10.1529/biophysj.106.095927. ISSN 0006-3495. PMC 1913142. PMID 17483178.
Chennubhotla, C; Rader, AJ; Yang, LW; Bahar, I (2005). "Elastic network models for understanding biomolecular machinery: from enzymes to supramolecular assemblies". Phys. Biol. 2 (4): S173–S180. Bibcode:2005PhBio...2S.173C. doi:10.1088/1478-3975/2/4/S12. PMID 16280623. S2CID 28083452.
Hinsen, K (1999). "Analysis of domain motions by approximate normal mode calculations". Proteins. 33 (3): 417–429. doi:10.1002/(sici)1097-0134(19981115)33:3<417::aid-prot10>3.0.co;2-8. PMID 9829700. S2CID 33336590.
Rader, AJ.; Anderson, G.; Isin, B.; Khorana, H. G.; Bahar, I.; Klein-Seetharaman, J. (2004). "Identification of core amino acids stabilizing rhodopsin". Proc. Natl. Acad. Sci. U.S.A. 101 (19): 7246–7251. Bibcode:2004PNAS..101.7246R. doi:10.1073/pnas.0401429101. PMC 409904. PMID 15123809.
Kundu, S.; Sorensen, D.C.; Phillips, G.N. Jr (2004). "Automatic domain decomposition of proteins by a Gaussian Network Model". Proteins. 57 (4): 725–733. doi:10.1002/prot.20268. PMID 15478120. S2CID 9600056.
Keskin, O.; et al. (2002). "Relating molecular flexibility to function: a case study of tubulin". Biophys. J. 83 (2): 663–80. Bibcode:2002BpJ....83..663K. doi:10.1016/s0006-3495(02)75199-0. PMC 1302177. PMID 12124255.
Shrivastava, Indira H.; Bahar, Ivet (2006). "Common Mechanism of Pore Opening Shared by Five Different Potassium Channels". Biophys J. 90 (11): 3929–3940. Bibcode:2006BpJ....90.3929S. doi:10.1529/biophysj.105.080093. PMC 1459499. PMID 16533848.
Yang, LW; Bahar, I (2005). "Coupling between Catalytic Site and Collective Dynamics: A requirement for Mechanochemical Activity of Enzymes". Structure. 13 (6): 893–904. doi:10.1016/j.str.2005.03.015. PMC 1489920. PMID 15939021.
Wang, Y. Rader; AJ; Bahar, I.; Jernigan, RL. (2004). "Global Ribosome Motions Revealed with Elastic Network Model". J. Struct. Biol. 147 (3): 302–314. doi:10.1016/j.jsb.2004.01.005. PMID 15450299.
Rader, AJ; Vlad, Daniel; Bahar, Ivet (2005). "Maturation Dynamics of Bacteriophage HK97 Capsid". Structure. 13 (3): 413–21. doi:10.1016/j.str.2004.12.015. PMID 15766543.
Hamacher, K.; Trylska, J.; McCammon, J.A. (2006). "Dependency Map of Proteins in the Small Ribosomal Subunit". PLOS Comput. Biol. 2 (2) e10. Bibcode:2006PLSCB...2...10H. doi:10.1371/journal.pcbi.0020010. PMC 1364506. PMID 16485038.
Ming, D.; et al. (2002). "How to describe protein motion without amino acid sequence and atomic coordinates". Proc. Natl. Acad. Sci. U.S.A. 99 (13): 8620–8625. Bibcode:2002PNAS...99.8620M. doi:10.1073/pnas.082148899. PMC 124334. PMID 12084922.
Tama, F.; Wriggers, W.; Brooks III, C.L. (2002). "Exploring global distortions of biological macromolecules and assemblies from low-resolution structural information and elastic network theory". J. Mol. Biol. 321 (2): 297–305. CiteSeerX 10.1.1.457.8. doi:10.1016/s0022-2836(02)00627-7. PMID 12144786.
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ncbi.nlm.nih.gov

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psu.edu (Global: 207^th place; English: 136^th place)

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researchgate.net (Global: 120^th place; English: 125^th place)

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semanticscholar.org (Global: 11^th place; English: 8^th place)

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Yang, Lei; Song, Guang; Jernigan, Robert L. (2007-08-01). "How well can we understand large-scale protein motions using normal modes of elastic network models?". Biophysical Journal. 93 (3): 920–929. Bibcode:2007BpJ....93..920Y. doi:10.1529/biophysj.106.095927. ISSN 0006-3495. PMC 1913142. PMID 17483178.

Gaussian network model (English Wikipedia)

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