Gene Ontology (English Wikipedia)
Analysis of information sources in references of the Wikipedia article "Gene Ontology" in English language version.
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berkeleybop.org
- GOOSE Archived 2009-03-01 at the Wayback Machine, GO Online SQL Environment; allows direct SQL querying of the GO database
doi.org
- The Gene Ontology Consortium (January 2008). "The Gene Ontology project in 2008". Nucleic Acids Research. 36 (Database issue): D440–4. doi:10.1093/nar/gkm883. PMC 2238979. PMID 17984083.
- Dessimoz, Christophe; Škunca, Nives, eds. (2017). The Gene Ontology Handbook. Methods in Molecular Biology. Vol. 1446. doi:10.1007/978-1-4939-3743-1. ISBN 9781493937431. ISSN 1064-3745. S2CID 3708801.
- Gaudet, Pascale; Škunca, Nives; Hu, James C.; Dessimoz, Christophe (2017). "Primer on the Gene Ontology". The Gene Ontology Handbook. Methods in Molecular Biology. Vol. 1446. pp. 25–37. doi:10.1007/978-1-4939-3743-1_3. ISBN 978-1-4939-3741-7. ISSN 1064-3745. PMC 6377150. PMID 27812933.
- Smith B, Ashburner M, Rosse C, Bard J, Bug W, Ceusters W, Goldberg LJ, Eilbeck K, Ireland A, Mungall CJ, Leontis N, Rocca-Serra P, Ruttenberg A, Sansone SA, Scheuermann RH, Shah N, Whetzel PL, Lewis S (November 2007). "The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration". Nature Biotechnology. 25 (11): 1251–5. doi:10.1038/nbt1346. PMC 2814061. PMID 17989687.
- Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G (May 2000). "Gene ontology: tool for the unification of biology. The Gene Ontology Consortium". Nature Genetics. 25 (1): 25–9. doi:10.1038/75556. PMC 3037419. PMID 10802651.
- Deb, B. (2012). "An ontological analysis of some biological ontologies". Frontiers in Genetics. 3: 269. doi:10.3389/fgene.2012.00269. PMC 3509948. PMID 23226158.
- Lovering, Ruth C. (2017). "How Does the Scientific Community Contribute to Gene Ontology?". In Dessimoz, C; Skunca, N (eds.). The Gene Ontology Handbook. Methods in Molecular Biology. Vol. 1446. Springer (New York). pp. 85–93. doi:10.1007/978-1-4939-3743-1_7. ISBN 978-1-4939-3741-7. ISSN 1064-3745. PMID 27812937. S2CID 4924457.
- Diehl AD, Lee JA, Scheuermann RH, Blake JA (April 2007). "Ontology development for biological systems: immunology". Bioinformatics. 23 (7): 913–5. doi:10.1093/bioinformatics/btm029. PMID 17267433.
- du Plessis L, Skunca N, Dessimoz C (November 2011). "The what, where, how and why of gene ontology--a primer for bioinformaticians". Briefings in Bioinformatics. 12 (6): 723–35. doi:10.1093/bib/bbr002. PMC 3220872. PMID 21330331.
- Pinoli P, Chicco D, Masseroli M (June 2013). "Computational algorithms to predict Gene Ontology annotation". BMC Bioinformatics. 16 (6): S4. doi:10.1186/1471-2105-16-S6-S4. PMC 4416163. PMID 25916950.
- Cozzetto, Domenico; Jones, David T. (2017). "Computational Methods for Annotation Transfers from Sequence". In Dessimoz, C; Skunca, N (eds.). The Gene Ontology Handbook. Methods in Molecular Biology. Vol. 1446. Springer (New York). pp. 55–67. doi:10.1007/978-1-4939-3743-1_5. ISBN 978-1-4939-3741-7. ISSN 1064-3745. PMID 27812935.
- Mosquera JL, Sánchez-Pla A (July 2008). "SerbGO: searching for the best GO tool". Nucleic Acids Research. 36 (Web Server issue): W368–71. doi:10.1093/nar/gkn256. PMC 2447766. PMID 18480123.
- Carbon S, Ireland A, Mungall CJ, Shu S, Marshall B, Lewis S (January 2009). "AmiGO: online access to ontology and annotation data". Bioinformatics. 25 (2). AmiGO Hub; Web Presence Working Group: 288–9. doi:10.1093/bioinformatics/btn615. PMC 2639003. PMID 19033274.
- Day-Richter J, Harris MA, Haendel M, Lewis S (August 2007). "OBO-Edit--an ontology editor for biologists". Bioinformatics. 23 (16): 2198–200. doi:10.1093/bioinformatics/btm112. PMID 17545183.
evidenceontology.org
- "Evidence Code Ontology". Evidence Code Ontology.
geneontology.org
amigo.geneontology.org
- AmiGO--the current official web-based set of tools for searching and browsing the Gene Ontology database
- The GO Consortium (2009-03-16). "AmiGO: P68032 Associations".
- "AmiGO BLAST tool". Archived from the original on 2011-08-20. Retrieved 2009-03-13.
- AmiGO Term Enrichment tool Archived 2008-04-07 at the Wayback Machine; finds significant shared GO terms in an annotation set
- AmiGO Slimmer Archived 2011-09-29 at the Wayback Machine; maps granular annotations up to high-level terms
geneontology.org
- "The Gene Ontology Resource". Gene Ontology Consortium.
- "The GO Consortium". Archived from the original on 2014-07-02. Retrieved 2009-03-16.
wiki.geneontology.org
- "AmiGO 2 Manual: Term Page". Gene Ontology Consortium Wiki. 2013-07-10.
nih.gov
pubmed.ncbi.nlm.nih.gov
- The Gene Ontology Consortium (January 2008). "The Gene Ontology project in 2008". Nucleic Acids Research. 36 (Database issue): D440–4. doi:10.1093/nar/gkm883. PMC 2238979. PMID 17984083.
- Gaudet, Pascale; Škunca, Nives; Hu, James C.; Dessimoz, Christophe (2017). "Primer on the Gene Ontology". The Gene Ontology Handbook. Methods in Molecular Biology. Vol. 1446. pp. 25–37. doi:10.1007/978-1-4939-3743-1_3. ISBN 978-1-4939-3741-7. ISSN 1064-3745. PMC 6377150. PMID 27812933.
- Smith B, Ashburner M, Rosse C, Bard J, Bug W, Ceusters W, Goldberg LJ, Eilbeck K, Ireland A, Mungall CJ, Leontis N, Rocca-Serra P, Ruttenberg A, Sansone SA, Scheuermann RH, Shah N, Whetzel PL, Lewis S (November 2007). "The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration". Nature Biotechnology. 25 (11): 1251–5. doi:10.1038/nbt1346. PMC 2814061. PMID 17989687.
- Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G (May 2000). "Gene ontology: tool for the unification of biology. The Gene Ontology Consortium". Nature Genetics. 25 (1): 25–9. doi:10.1038/75556. PMC 3037419. PMID 10802651.
- Deb, B. (2012). "An ontological analysis of some biological ontologies". Frontiers in Genetics. 3: 269. doi:10.3389/fgene.2012.00269. PMC 3509948. PMID 23226158.
- Lovering, Ruth C. (2017). "How Does the Scientific Community Contribute to Gene Ontology?". In Dessimoz, C; Skunca, N (eds.). The Gene Ontology Handbook. Methods in Molecular Biology. Vol. 1446. Springer (New York). pp. 85–93. doi:10.1007/978-1-4939-3743-1_7. ISBN 978-1-4939-3741-7. ISSN 1064-3745. PMID 27812937. S2CID 4924457.
- Diehl AD, Lee JA, Scheuermann RH, Blake JA (April 2007). "Ontology development for biological systems: immunology". Bioinformatics. 23 (7): 913–5. doi:10.1093/bioinformatics/btm029. PMID 17267433.
- du Plessis L, Skunca N, Dessimoz C (November 2011). "The what, where, how and why of gene ontology--a primer for bioinformaticians". Briefings in Bioinformatics. 12 (6): 723–35. doi:10.1093/bib/bbr002. PMC 3220872. PMID 21330331.
- Pinoli P, Chicco D, Masseroli M (June 2013). "Computational algorithms to predict Gene Ontology annotation". BMC Bioinformatics. 16 (6): S4. doi:10.1186/1471-2105-16-S6-S4. PMC 4416163. PMID 25916950.
- Cozzetto, Domenico; Jones, David T. (2017). "Computational Methods for Annotation Transfers from Sequence". In Dessimoz, C; Skunca, N (eds.). The Gene Ontology Handbook. Methods in Molecular Biology. Vol. 1446. Springer (New York). pp. 55–67. doi:10.1007/978-1-4939-3743-1_5. ISBN 978-1-4939-3741-7. ISSN 1064-3745. PMID 27812935.
- Mosquera JL, Sánchez-Pla A (July 2008). "SerbGO: searching for the best GO tool". Nucleic Acids Research. 36 (Web Server issue): W368–71. doi:10.1093/nar/gkn256. PMC 2447766. PMID 18480123.
- Carbon S, Ireland A, Mungall CJ, Shu S, Marshall B, Lewis S (January 2009). "AmiGO: online access to ontology and annotation data". Bioinformatics. 25 (2). AmiGO Hub; Web Presence Working Group: 288–9. doi:10.1093/bioinformatics/btn615. PMC 2639003. PMID 19033274.
- Day-Richter J, Harris MA, Haendel M, Lewis S (August 2007). "OBO-Edit--an ontology editor for biologists". Bioinformatics. 23 (16): 2198–200. doi:10.1093/bioinformatics/btm112. PMID 17545183.
ncbi.nlm.nih.gov
- The Gene Ontology Consortium (January 2008). "The Gene Ontology project in 2008". Nucleic Acids Research. 36 (Database issue): D440–4. doi:10.1093/nar/gkm883. PMC 2238979. PMID 17984083.
- Gaudet, Pascale; Škunca, Nives; Hu, James C.; Dessimoz, Christophe (2017). "Primer on the Gene Ontology". The Gene Ontology Handbook. Methods in Molecular Biology. Vol. 1446. pp. 25–37. doi:10.1007/978-1-4939-3743-1_3. ISBN 978-1-4939-3741-7. ISSN 1064-3745. PMC 6377150. PMID 27812933.
- Smith B, Ashburner M, Rosse C, Bard J, Bug W, Ceusters W, Goldberg LJ, Eilbeck K, Ireland A, Mungall CJ, Leontis N, Rocca-Serra P, Ruttenberg A, Sansone SA, Scheuermann RH, Shah N, Whetzel PL, Lewis S (November 2007). "The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration". Nature Biotechnology. 25 (11): 1251–5. doi:10.1038/nbt1346. PMC 2814061. PMID 17989687.
- Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G (May 2000). "Gene ontology: tool for the unification of biology. The Gene Ontology Consortium". Nature Genetics. 25 (1): 25–9. doi:10.1038/75556. PMC 3037419. PMID 10802651.
- Deb, B. (2012). "An ontological analysis of some biological ontologies". Frontiers in Genetics. 3: 269. doi:10.3389/fgene.2012.00269. PMC 3509948. PMID 23226158.
- du Plessis L, Skunca N, Dessimoz C (November 2011). "The what, where, how and why of gene ontology--a primer for bioinformaticians". Briefings in Bioinformatics. 12 (6): 723–35. doi:10.1093/bib/bbr002. PMC 3220872. PMID 21330331.
- Pinoli P, Chicco D, Masseroli M (June 2013). "Computational algorithms to predict Gene Ontology annotation". BMC Bioinformatics. 16 (6): S4. doi:10.1186/1471-2105-16-S6-S4. PMC 4416163. PMID 25916950.
- Mosquera JL, Sánchez-Pla A (July 2008). "SerbGO: searching for the best GO tool". Nucleic Acids Research. 36 (Web Server issue): W368–71. doi:10.1093/nar/gkn256. PMC 2447766. PMID 18480123.
- Carbon S, Ireland A, Mungall CJ, Shu S, Marshall B, Lewis S (January 2009). "AmiGO: online access to ontology and annotation data". Bioinformatics. 25 (2). AmiGO Hub; Web Presence Working Group: 288–9. doi:10.1093/bioinformatics/btn615. PMC 2639003. PMID 19033274.
plantontology.org
- The Plant Ontology Consortium (2009-03-16). "Plant Ontology Consortium". Retrieved 2009-03-16.
semanticscholar.org
api.semanticscholar.org
- Dessimoz, Christophe; Škunca, Nives, eds. (2017). The Gene Ontology Handbook. Methods in Molecular Biology. Vol. 1446. doi:10.1007/978-1-4939-3743-1. ISBN 9781493937431. ISSN 1064-3745. S2CID 3708801.
- Lovering, Ruth C. (2017). "How Does the Scientific Community Contribute to Gene Ontology?". In Dessimoz, C; Skunca, N (eds.). The Gene Ontology Handbook. Methods in Molecular Biology. Vol. 1446. Springer (New York). pp. 85–93. doi:10.1007/978-1-4939-3743-1_7. ISBN 978-1-4939-3741-7. ISSN 1064-3745. PMID 27812937. S2CID 4924457.
sourceforge.net
- "Gene Ontology downloads at SourceForge". Retrieved 2009-03-16.
web.archive.org
- "The GO Consortium". Archived from the original on 2014-07-02. Retrieved 2009-03-16.
- "AmiGO BLAST tool". Archived from the original on 2011-08-20. Retrieved 2009-03-13.
- AmiGO Term Enrichment tool Archived 2008-04-07 at the Wayback Machine; finds significant shared GO terms in an annotation set
- AmiGO Slimmer Archived 2011-09-29 at the Wayback Machine; maps granular annotations up to high-level terms
- GOOSE Archived 2009-03-01 at the Wayback Machine, GO Online SQL Environment; allows direct SQL querying of the GO database
worldcat.org
- Dessimoz, Christophe; Škunca, Nives, eds. (2017). The Gene Ontology Handbook. Methods in Molecular Biology. Vol. 1446. doi:10.1007/978-1-4939-3743-1. ISBN 9781493937431. ISSN 1064-3745. S2CID 3708801.
- Gaudet, Pascale; Škunca, Nives; Hu, James C.; Dessimoz, Christophe (2017). "Primer on the Gene Ontology". The Gene Ontology Handbook. Methods in Molecular Biology. Vol. 1446. pp. 25–37. doi:10.1007/978-1-4939-3743-1_3. ISBN 978-1-4939-3741-7. ISSN 1064-3745. PMC 6377150. PMID 27812933.
- Lovering, Ruth C. (2017). "How Does the Scientific Community Contribute to Gene Ontology?". In Dessimoz, C; Skunca, N (eds.). The Gene Ontology Handbook. Methods in Molecular Biology. Vol. 1446. Springer (New York). pp. 85–93. doi:10.1007/978-1-4939-3743-1_7. ISBN 978-1-4939-3741-7. ISSN 1064-3745. PMID 27812937. S2CID 4924457.
- Cozzetto, Domenico; Jones, David T. (2017). "Computational Methods for Annotation Transfers from Sequence". In Dessimoz, C; Skunca, N (eds.). The Gene Ontology Handbook. Methods in Molecular Biology. Vol. 1446. Springer (New York). pp. 55–67. doi:10.1007/978-1-4939-3743-1_5. ISBN 978-1-4939-3741-7. ISSN 1064-3745. PMID 27812935.