Genetic code (English Wikipedia)

Higgs PG, Pudritz RE (June 2009). "A thermodynamic basis for prebiotic amino acid synthesis and the nature of the first genetic code". Astrobiology. 9 (5): 483–490. arXiv:0904.0402. Bibcode:2009AsBio...9..483H. doi:10.1089/ast.2008.0280. PMID 19566427. S2CID 9039622.
Tlusty T (November 2007). "A model for the emergence of the genetic code as a transition in a noisy information channel". Journal of Theoretical Biology. 249 (2): 331–342. arXiv:1007.4122. Bibcode:2007JThBi.249..331T. doi:10.1016/j.jtbi.2007.07.029. PMID 17826800. S2CID 12206140.
Tlusty T (February 2008). "Rate-distortion scenario for the emergence and evolution of noisy molecular codes". Physical Review Letters. 100 (4) 048101. arXiv:1007.4149. Bibcode:2008PhRvL.100d8101T. doi:10.1103/PhysRevLett.100.048101. PMID 18352335. S2CID 12246664.
Tlusty T (September 2010). "A colorful origin for the genetic code: information theory, statistical mechanics and the emergence of molecular codes". Physics of Life Reviews. 7 (3): 362–376. arXiv:1007.3906. Bibcode:2010PhLRv...7..362T. doi:10.1016/j.plrev.2010.06.002. PMID 20558115. S2CID 1845965.

books.google.com (Global: 3^rd place; English: 3^rd place)

Crick F (10 July 1990). "Chapter 8: The Genetic Code". What Mad Pursuit: A Personal View of Scientific Discovery. Basic Books. pp. 89–101. ISBN 978-0-465-09138-6. OCLC 1020240407.^{[permanent dead link]}
Watson JD (2007). Avoid Boring People: Lessons from a Life in Science. Oxford University Press. p. 112. ISBN 978-0-19-280273-6. OCLC 47716375.
Simon M (7 January 2005). Emergent Computation: Emphasizing Bioinformatics. Springer Science & Business Media. pp. 105–106. ISBN 978-0-387-22046-8.
King RC, Mulligan P, Stansfield W (10 January 2013). A Dictionary of Genetics. OUP USA. p. 608. ISBN 978-0-19-976644-4.
Watson JD (2008). Molecular Biology of the Gene. Pearson/Benjamin Cummings. ISBN 978-0-8053-9592-1. ^{: 102–117} ^{: 521–522}
Michel-Beyerle ME (1990). Reaction centers of photosynthetic bacteria: Feldafing-II-Meeting. Springer-Verlag. ISBN 978-3-540-53420-4.
Yarus M (2010). Life from an RNA World: The Ancestor Within. Harvard University Press. ISBN 978-0-674-05075-4.

doi.org (Global: 2^nd place; English: 2^nd place)

Turanov AA, Lobanov AV, Fomenko DE, Morrison HG, Sogin ML, Klobutcher LA, et al. (January 2009). "Genetic code supports targeted insertion of two amino acids by one codon". Science. 323 (5911): 259–261. doi:10.1126/science.1164748. PMC 3088105. PMID 19131629.
Watson JD, Crick FH (May 1953). "Genetical implications of the structure of deoxyribonucleic acid". Nature. 171 (4361): 964–967. Bibcode:1953Natur.171..964W. doi:10.1038/171964b0. PMID 13063483. S2CID 4256010.
Stegmann UE (September 2016). "'Genetic Coding' Reconsidered: An Analysis of Actual Usage". The British Journal for the Philosophy of Science. 67 (3): 707–730. doi:10.1093/bjps/axv007. PMC 4990703. PMID 27924115.
Hayes B (1998). "Computing Science: The Invention of the Genetic Code". American Scientist. 86 (1): 8–14. doi:10.1511/1998.17.3338. ISSN 0003-0996. JSTOR 27856930. S2CID 121907709.
Strauss BS (March 2019). "Martynas Yčas: The "Archivist" of the RNA Tie Club". Genetics. 211 (3): 789–795. doi:10.1534/genetics.118.301754. PMC 6404253. PMID 30846543.
Fry M (2022). "Crick's Adaptor Hypothesis and the Discovery of Transfer RNA: Experiment Surpassing Theoretical Prediction". Philosophy, Theory, and Practice in Biology. 14. doi:10.3998/ptpbio.2628. ISSN 2475-3025. S2CID 249112573.
Barciszewska MZ, Perrigue PM, Barciszewski J (January 2016). "tRNA--the golden standard in molecular biology". Molecular Biosystems. 12 (1): 12–17. doi:10.1039/c5mb00557d. PMID 26549858.
Yanofsky C (March 2007). "Establishing the triplet nature of the genetic code". Cell. 128 (5): 815–818. doi:10.1016/j.cell.2007.02.029. PMID 17350564. S2CID 14249277.
Nirenberg MW, Matthaei JH (October 1961). "The dependence of cell-free protein synthesis in E. coli upon naturally occurring or synthetic polyribonucleotides". Proceedings of the National Academy of Sciences of the United States of America. 47 (10): 1588–1602. Bibcode:1961PNAS...47.1588N. doi:10.1073/pnas.47.10.1588. PMC 223178. PMID 14479932.
Gardner RS, Wahba AJ, Basilio C, Miller RS, Lengyel P, Speyer JF (December 1962). "Synthetic polynucleotides and the amino acid code. VII". Proceedings of the National Academy of Sciences of the United States of America. 48 (12): 2087–2094. Bibcode:1962PNAS...48.2087G. doi:10.1073/pnas.48.12.2087. PMC 221128. PMID 13946552.
Wahba AJ, Gardner RS, Basilio C, Miller RS, Speyer JF, Lengyel P (January 1963). "Synthetic polynucleotides and the amino acid code. VIII". Proceedings of the National Academy of Sciences of the United States of America. 49 (1): 116–122. Bibcode:1963PNAS...49..116W. doi:10.1073/pnas.49.1.116. PMC 300638. PMID 13998282.
Nirenberg M, Leder P, Bernfield M, Brimacombe R, Trupin J, Rottman F, et al. (May 1965). "RNA codewords and protein synthesis, VII. On the general nature of the RNA code". Proceedings of the National Academy of Sciences of the United States of America. 53 (5): 1161–1168. Bibcode:1965PNAS...53.1161N. doi:10.1073/pnas.53.5.1161. PMC 301388. PMID 5330357.
Edgar B (October 2004). "The genome of bacteriophage T4: an archeological dig". Genetics. 168 (2): 575–582. doi:10.1093/genetics/168.2.575. PMC 1448817. PMID 15514035.
Budisa N (23 December 2005). The book at the Wiley Online Library. doi:10.1002/3527607188. ISBN 978-3-527-31243-6.
Kubyshkin V, Budisa N (August 2017). "Synthetic alienation of microbial organisms by using genetic code engineering: Why and how?". Biotechnology Journal. 12 (8) 1600097: 16000933. doi:10.1002/biot.201600097. PMID 28671771.
Xie J, Schultz PG (December 2005). "Adding amino acids to the genetic repertoire". Current Opinion in Chemical Biology. 9 (6): 548–554. doi:10.1016/j.cbpa.2005.10.011. PMID 16260173.
Wang Q, Parrish AR, Wang L (March 2009). "Expanding the genetic code for biological studies". Chemistry & Biology. 16 (3): 323–336. doi:10.1016/j.chembiol.2009.03.001. PMC 2696486. PMID 19318213.
Hoesl MG, Oehm S, Durkin P, Darmon E, Peil L, Aerni HR, et al. (August 2015). "Chemical Evolution of a Bacterial Proteome". Angewandte Chemie. 54 (34): 10030–10034. Bibcode:2015ACIE...5410030H. doi:10.1002/anie.201502868. PMC 4782924. PMID 26136259. NIHMSID: NIHMS711205
Zhang Y, Lamb BM, Feldman AW, Zhou AX, Lavergne T, Li L, et al. (February 2017). "A semisynthetic organism engineered for the stable expansion of the genetic alphabet". Proceedings of the National Academy of Sciences of the United States of America. 114 (6): 1317–1322. Bibcode:2017PNAS..114.1317Z. doi:10.1073/pnas.1616443114. PMC 5307467. PMID 28115716.
Han S, Yang A, Lee S, Lee HW, Park CB, Park HS (February 2017). "Expanding the genetic code of Mus musculus". Nature Communications. 8 14568. Bibcode:2017NatCo...814568H. doi:10.1038/ncomms14568. PMC 5321798. PMID 28220771.
Fredens J, Wang K, de la Torre D, Funke LF, Robertson WE, Christova Y, et al. (May 2019). "Total synthesis of Escherichia coli with a recoded genome". Nature. 569 (7757): 514–518. Bibcode:2019Natur.569..514F. doi:10.1038/s41586-019-1192-5. PMC 7039709. PMID 31092918. S2CID 205571025.
Robertson WE, Rehm FB, Spinck M, Schumann RL, Tian R, Liu W, et al. (July 2025). "Escherichia coli with a 57-codon genetic code". Science. 390 (6771) eady4368. bioRxiv 10.1101/2025.05.02.651837. doi:10.1126/science.ady4368. PMID 40743368.
Touriol C, Bornes S, Bonnal S, Audigier S, Prats H, Prats AC, et al. (2003). "Generation of protein isoform diversity by alternative initiation of translation at non-AUG codons". Biology of the Cell. 95 (3–4): 169–178. doi:10.1016/S0248-4900(03)00033-9. PMID 12867081.
Freisinger E, Grollman AP, Miller H, Kisker C (April 2004). "Lesion (in)tolerance reveals insights into DNA replication fidelity". The EMBO Journal. 23 (7): 1494–1505. doi:10.1038/sj.emboj.7600158. PMC 391067. PMID 15057282.
Chang JC, Kan YW (June 1979). "beta 0 thalassemia, a nonsense mutation in man". Proceedings of the National Academy of Sciences of the United States of America. 76 (6): 2886–2889. Bibcode:1979PNAS...76.2886C. doi:10.1073/pnas.76.6.2886. PMC 383714. PMID 88735.
Boillée S, Vande Velde C, Cleveland DW (October 2006). "ALS: a disease of motor neurons and their nonneuronal neighbors". Neuron. 52 (1): 39–59. doi:10.1016/j.neuron.2006.09.018. PMID 17015226.
Isbrandt D, Hopwood JJ, von Figura K, Peters C (1996). "Two novel frameshift mutations causing premature stop codons in a patient with the severe form of Maroteaux-Lamy syndrome". Human Mutation. 7 (4): 361–363. doi:10.1002/(SICI)1098-1004(1996)7:4<361::AID-HUMU12>3.0.CO;2-0. PMID 8723688. S2CID 22693748.
Crow JF (1993). "How much do we know about spontaneous human mutation rates?". Environmental and Molecular Mutagenesis. 21 (2): 122–129. Bibcode:1993EnvMM..21..122C. doi:10.1002/em.2850210205. PMID 8444142. S2CID 32918971.
Sawyer SA, Parsch J, Zhang Z, Hartl DL (April 2007). "Prevalence of positive selection among nearly neutral amino acid replacements in Drosophila". Proceedings of the National Academy of Sciences of the United States of America. 104 (16): 6504–6510. Bibcode:2007PNAS..104.6504S. doi:10.1073/pnas.0701572104. PMC 1871816. PMID 17409186.
Drake JW, Holland JJ (November 1999). "Mutation rates among RNA viruses". Proceedings of the National Academy of Sciences of the United States of America. 96 (24): 13910–13913. Bibcode:1999PNAS...9613910D. doi:10.1073/pnas.96.24.13910. PMC 24164. PMID 10570172.
Holland J, Spindler K, Horodyski F, Grabau E, Nichol S, VandePol S (March 1982). "Rapid evolution of RNA genomes". Science. 215 (4540): 1577–1585. Bibcode:1982Sci...215.1577H. doi:10.1126/science.7041255. PMID 7041255.
de Visser JA, Rozen DE (April 2006). "Clonal interference and the periodic selection of new beneficial mutations in Escherichia coli". Genetics. 172 (4): 2093–2100. doi:10.1534/genetics.105.052373. PMC 1456385. PMID 16489229.
Fricke M, Gerst R, Ibrahim B, Niepmann M, Marz M (February 2019). "Global importance of RNA secondary structures in protein-coding sequences". Bioinformatics. 35 (4): 579–583. doi:10.1093/bioinformatics/bty678. PMC 7109657. PMID 30101307. S2CID 51968530.
Zhang Y, Baranov PV, Atkins JF, Gladyshev VN (May 2005). "Pyrrolysine and selenocysteine use dissimilar decoding strategies". The Journal of Biological Chemistry. 280 (21): 20740–20751. doi:10.1074/jbc.M501458200. PMID 15788401.
Prat L, Heinemann IU, Aerni HR, Rinehart J, O'Donoghue P, Söll D (December 2012). "Carbon source-dependent expansion of the genetic code in bacteria". Proceedings of the National Academy of Sciences of the United States of America. 109 (51): 21070–21075. Bibcode:2012PNAS..10921070P. doi:10.1073/pnas.1218613110. PMC 3529041. PMID 23185002.
Dutilh BE, Jurgelenaite R, Szklarczyk R, van Hijum SA, Harhangi HR, Schmid M, et al. (July 2011). "FACIL: Fast and Accurate Genetic Code Inference and Logo". Bioinformatics. 27 (14): 1929–1933. doi:10.1093/bioinformatics/btr316. PMC 3129529. PMID 21653513.
Crick FH (December 1968). "The origin of the genetic code". Journal of Molecular Biology. 38 (3): 367–379. doi:10.1016/0022-2836(68)90392-6. PMID 4887876.
Barrell BG, Bankier AT, Drouin J (November 1979). "A different genetic code in human mitochondria". Nature. 282 (5735): 189–194. Bibcode:1979Natur.282..189B. doi:10.1038/282189a0. PMID 226894. S2CID 4335828.
Jukes TH, Osawa S (December 1990). "The genetic code in mitochondria and chloroplasts". Experientia. 46 (11–12): 1117–1126. doi:10.1007/BF01936921. PMID 2253709. S2CID 19264964.
Fitzpatrick DA, Logue ME, Stajich JE, Butler G (November 2006). "A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis". BMC Evolutionary Biology. 6: 99. doi:10.1186/1471-2148-6-99. PMC 1679813. PMID 17121679.
Santos MA, Tuite MF (May 1995). "The CUG codon is decoded in vivo as serine and not leucine in Candida albicans". Nucleic Acids Research. 23 (9): 1481–1486. doi:10.1093/nar/23.9.1481. PMC 306886. PMID 7784200.
Butler G, Rasmussen MD, Lin MF, Santos MA, Sakthikumar S, Munro CA, et al. (June 2009). "Evolution of pathogenicity and sexual reproduction in eight Candida genomes". Nature. 459 (7247): 657–662. Bibcode:2009Natur.459..657B. doi:10.1038/nature08064. PMC 2834264. PMID 19465905.
Taylor DJ, Ballinger MJ, Bowman SM, Bruenn JA (2013). "Virus-host co-evolution under a modified nuclear genetic code". PeerJ. 1 e50. doi:10.7717/peerj.50. PMC 3628385. PMID 23638388.
Hofhuis J, Schueren F, Nötzel C, Lingner T, Gärtner J, Jahn O, et al. (November 2016). "The functional readthrough extension of malate dehydrogenase reveals a modification of the genetic code". Open Biology. 6 (11) 160246. doi:10.1098/rsob.160246. PMC 5133446. PMID 27881739.
Schueren F, Lingner T, George R, Hofhuis J, Dickel C, Gärtner J, et al. (September 2014). "Peroxisomal lactate dehydrogenase is generated by translational readthrough in mammals". eLife. 3 e03640. doi:10.7554/eLife.03640. PMC 4359377. PMID 25247702.
Schueren F, Thoms S (August 2016). "Functional Translational Readthrough: A Systems Biology Perspective". PLOS Genetics. 12 (8) e1006196. doi:10.1371/journal.pgen.1006196. PMC 4973966. PMID 27490485.
Kubyshkin V, Acevedo-Rocha CG, Budisa N (February 2018). "On universal coding events in protein biogenesis". Bio Systems. 164: 16–25. Bibcode:2018BiSys.164...16K. doi:10.1016/j.biosystems.2017.10.004. PMID 29030023.
Heaphy SM, Mariotti M, Gladyshev VN, Atkins JF, Baranov PV (November 2016). "Novel Ciliate Genetic Code Variants Including the Reassignment of All Three Stop Codons to Sense Codons in Condylostoma magnum". Molecular Biology and Evolution. 33 (11): 2885–2889. doi:10.1093/molbev/msw166. PMC 5062323. PMID 27501944.
Lobanov AV, Heaphy SM, Turanov AA, Gerashchenko MV, Pucciarelli S, Devaraj RR, et al. (January 2017). "Position-dependent termination and widespread obligatory frameshifting in Euplotes translation". Nature Structural & Molecular Biology. 24 (1): 61–68. doi:10.1038/nsmb.3330. PMC 5295771. PMID 27870834.
Koonin EV, Novozhilov AS (February 2009). "Origin and evolution of the genetic code: the universal enigma". IUBMB Life. 61 (2): 99–111. doi:10.1002/iub.146. PMC 3293468. PMID 19117371.
Sengupta S, Higgs PG (June 2015). "Pathways of Genetic Code Evolution in Ancient and Modern Organisms". Journal of Molecular Evolution. 80 (5–6): 229–243. Bibcode:2015JMolE..80..229S. doi:10.1007/s00239-015-9686-8. PMID 26054480. S2CID 15542587.
Xie J, Schultz PG (October 2006). "A chemical toolkit for proteins--an expanded genetic code". Nature Reviews Molecular Cell Biology. 7 (10): 775–782. doi:10.1038/nrm2005. PMID 16926858. S2CID 19385756.
Liu CC, Schultz PG (2010). "Adding new chemistries to the genetic code". Annual Review of Biochemistry. 79: 413–444. doi:10.1146/annurev.biochem.052308.105824. PMID 20307192.
Chin JW (February 2014). "Expanding and reprogramming the genetic code of cells and animals". Annual Review of Biochemistry. 83: 379–408. doi:10.1146/annurev-biochem-060713-035737. PMID 24555827.
Shulgina Y, Eddy SR (November 2021). "A computational screen for alternative genetic codes in over 250,000 genomes". eLife. 10 e71402. doi:10.7554/eLife.71402. PMC 8629427. PMID 34751130.
Chen W, Geng Y, Zhang B, Yan Y, Zhao F, Miao M (April 2023). "Stop or Not: Genome-Wide Profiling of Reassigned Stop Codons in Ciliates". Molecular Biology and Evolution. 40 (4) msad064. doi:10.1093/molbev/msad064. PMC 10089648. PMID 36952281.
Fried SD, Fujishima K, Makarov M, Cherepashuk I, Hlouchova K (February 2022). "Peptides before and during the nucleotide world: an origins story emphasizing cooperation between proteins and nucleic acids". Journal of the Royal Society, Interface. 19 (187) 20210641. doi:10.1098/rsif.2021.0641. PMC 8833103. PMID 35135297.
Ribas de Pouplana L, Turner RJ, Steer BA, Schimmel P (September 1998). "Genetic code origins: tRNAs older than their synthetases?". Proceedings of the National Academy of Sciences of the United States of America. 95 (19): 11295–11300. Bibcode:1998PNAS...9511295D. doi:10.1073/pnas.95.19.11295. PMC 21636. PMID 9736730.
Koonin EV (May 2017). "Frozen Accident Pushing 50: Stereochemistry, Expansion, and Chance in the Evolution of the Genetic Code". Life. 7 (2): 22. Bibcode:2017Life....7...22K. doi:10.3390/life7020022. PMC 5492144. PMID 28545255.
Erives A (August 2011). "A model of proto-anti-codon RNA enzymes requiring L-amino acid homochirality". Journal of Molecular Evolution. 73 (1–2): 10–22. Bibcode:2011JMolE..73...10E. doi:10.1007/s00239-011-9453-4. PMC 3223571. PMID 21779963.
Freeland SJ, Hurst LD (September 1998). "The genetic code is one in a million". Journal of Molecular Evolution. 47 (3): 238–248. Bibcode:1998JMolE..47..238F. doi:10.1007/PL00006381. PMID 9732450. S2CID 20130470.
Taylor FJ, Coates D (1989). "The code within the codons". Bio Systems. 22 (3): 177–187. Bibcode:1989BiSys..22..177T. doi:10.1016/0303-2647(89)90059-2. PMID 2650752.
Di Giulio M (October 1989). "The extension reached by the minimization of the polarity distances during the evolution of the genetic code". Journal of Molecular Evolution. 29 (4): 288–293. Bibcode:1989JMolE..29..288D. doi:10.1007/BF02103616. PMID 2514270. S2CID 20803686.
Wong JT (February 1980). "Role of minimization of chemical distances between amino acids in the evolution of the genetic code". Proceedings of the National Academy of Sciences of the United States of America. 77 (2): 1083–1086. Bibcode:1980PNAS...77.1083W. doi:10.1073/pnas.77.2.1083. PMC 348428. PMID 6928661.
Freeland SJ, Knight RD, Landweber LF, Hurst LD (April 2000). "Early fixation of an optimal genetic code". Molecular Biology and Evolution. 17 (4): 511–518. doi:10.1093/oxfordjournals.molbev.a026331. PMID 10742043.
Hopfield JJ (September 1978). "Origin of the genetic code: a testable hypothesis based on tRNA structure, sequence, and kinetic proofreading". Proceedings of the National Academy of Sciences of the United States of America. 75 (9): 4334–4338. Bibcode:1978PNAS...75.4334H. doi:10.1073/pnas.75.9.4334. PMC 336109. PMID 279919.
Yarus M, Widmann JJ, Knight R (November 2009). "RNA-amino acid binding: a stereochemical era for the genetic code". Journal of Molecular Evolution. 69 (5): 406–429. Bibcode:2009JMolE..69..406Y. doi:10.1007/s00239-009-9270-1. PMID 19795157.
Brown SM, Voráček V, Freeland S (May 2023). "What Would an Alien Amino Acid Alphabet Look Like and Why?". Astrobiology. 23 (5): 536–549. Bibcode:2023AsBio..23..536B. doi:10.1089/ast.2022.0107. PMID 37022727. S2CID 257983174.
Knight RD, Freeland SJ, Landweber LF (June 1999). "Selection, history and chemistry: the three faces of the genetic code". Trends in Biochemical Sciences. 24 (6): 241–247. doi:10.1016/S0968-0004(99)01392-4. PMID 10366854.
Knight RD, Landweber LF (September 1998). "Rhyme or reason: RNA-arginine interactions and the genetic code". Chemistry & Biology. 5 (9): R215 – R220. doi:10.1016/S1074-5521(98)90001-1. PMID 9751648.
Brooks DJ, Fresco JR, Lesk AM, Singh M (October 2002). "Evolution of amino acid frequencies in proteins over deep time: inferred order of introduction of amino acids into the genetic code". Molecular Biology and Evolution. 19 (10): 1645–1655. doi:10.1093/oxfordjournals.molbev.a003988. PMID 12270892.
Amirnovin R (May 1997). "An analysis of the metabolic theory of the origin of the genetic code". Journal of Molecular Evolution. 44 (5): 473–476. Bibcode:1997JMolE..44..473A. doi:10.1007/PL00006170. PMID 9115171. S2CID 23334860.
Ronneberg TA, Landweber LF, Freeland SJ (December 2000). "Testing a biosynthetic theory of the genetic code: fact or artifact?". Proceedings of the National Academy of Sciences of the United States of America. 97 (25): 13690–13695. Bibcode:2000PNAS...9713690R. doi:10.1073/pnas.250403097. PMC 17637. PMID 11087835.
Trifonov EN (September 2009). "The origin of the genetic code and of the earliest oligopeptides". Research in Microbiology. 160 (7): 481–486. doi:10.1016/j.resmic.2009.05.004. PMID 19524038.
Higgs PG, Pudritz RE (June 2009). "A thermodynamic basis for prebiotic amino acid synthesis and the nature of the first genetic code". Astrobiology. 9 (5): 483–490. arXiv:0904.0402. Bibcode:2009AsBio...9..483H. doi:10.1089/ast.2008.0280. PMID 19566427. S2CID 9039622.
Chaliotis A, Vlastaridis P, Mossialos D, Ibba M, Becker HD, Stathopoulos C, et al. (February 2017). "The complex evolutionary history of aminoacyl-tRNA synthetases". Nucleic Acids Research. 45 (3): 1059–1068. doi:10.1093/nar/gkw1182. PMC 5388404. PMID 28180287.
Ntountoumi C, Vlastaridis P, Mossialos D, Stathopoulos C, Iliopoulos I, Promponas V, et al. (November 2019). "Low complexity regions in the proteins of prokaryotes perform important functional roles and are highly conserved". Nucleic Acids Research. 47 (19): 9998–10009. doi:10.1093/nar/gkz730. PMC 6821194. PMID 31504783.
Wehbi S, Wheeler A, Morel B, Manepalli N, Minh BQ, Lauretta DS, et al. (December 2024). "Order of amino acid recruitment into the genetic code resolved by last universal common ancestor's protein domains". Proceedings of the National Academy of Sciences of the United States of America. 121 (52) e2410311121. Bibcode:2024PNAS..12110311W. doi:10.1073/pnas.2410311121. PMC 11670089. PMID 39665745.
Freeland SJ, Wu T, Keulmann N (October 2003). "The case for an error minimizing standard genetic code". Origins of Life and Evolution of the Biosphere. 33 (4–5): 457–477. Bibcode:2003OLEB...33..457F. doi:10.1023/A:1025771327614. PMID 14604186. S2CID 18823745.
Baranov PV, Venin M, Provan G (May 2009). Gemmell NJ (ed.). "Codon size reduction as the origin of the triplet genetic code". PLOS ONE. 4 (5) e5708. Bibcode:2009PLoSO...4.5708B. doi:10.1371/journal.pone.0005708. PMC 2682656. PMID 19479032.
Tlusty T (November 2007). "A model for the emergence of the genetic code as a transition in a noisy information channel". Journal of Theoretical Biology. 249 (2): 331–342. arXiv:1007.4122. Bibcode:2007JThBi.249..331T. doi:10.1016/j.jtbi.2007.07.029. PMID 17826800. S2CID 12206140.
Tlusty T (February 2008). "Rate-distortion scenario for the emergence and evolution of noisy molecular codes". Physical Review Letters. 100 (4) 048101. arXiv:1007.4149. Bibcode:2008PhRvL.100d8101T. doi:10.1103/PhysRevLett.100.048101. PMID 18352335. S2CID 12246664.
Sella G, Ardell DH (September 2006). "The coevolution of genes and genetic codes: Crick's frozen accident revisited". Journal of Molecular Evolution. 63 (3): 297–313. Bibcode:2006JMolE..63..297S. doi:10.1007/s00239-004-0176-7. PMID 16838217. S2CID 1260806.
Tlusty T (September 2010). "A colorful origin for the genetic code: information theory, statistical mechanics and the emergence of molecular codes". Physics of Life Reviews. 7 (3): 362–376. arXiv:1007.3906. Bibcode:2010PhLRv...7..362T. doi:10.1016/j.plrev.2010.06.002. PMID 20558115. S2CID 1845965.
Jee J, Sundstrom A, Massey SE, Mishra B (November 2013). "What can information-asymmetric games tell us about the context of Crick's 'frozen accident'?". Journal of the Royal Society, Interface. 10 (88) 20130614. doi:10.1098/rsif.2013.0614. PMC 3785830. PMID 23985735.
Itzkovitz S, Alon U (April 2007). "The genetic code is nearly optimal for allowing additional information within protein-coding sequences". Genome Research. 17 (4): 405–412. doi:10.1101/gr.5987307. PMC 1832087. PMID 17293451.

genscript.com (Global: low place; English: low place)

"Codon Usage Frequency Table(chart)-Genscript". www.genscript.com. Retrieved 4 February 2022.

ghostarchive.org (Global: 32^nd place; English: 21^st place)

Zimmer C (15 May 2019). "Scientists Created Bacteria With a Synthetic Genome. Is This Artificial Life? - In a milestone for synthetic biology, colonies of E. coli thrive with DNA constructed from scratch by humans, not nature". The New York Times. Archived from the original on 2 January 2022. Retrieved 16 May 2019.

harvard.edu (Global: 18^th place; English: 17^th place)

ui.adsabs.harvard.edu

Watson JD, Crick FH (May 1953). "Genetical implications of the structure of deoxyribonucleic acid". Nature. 171 (4361): 964–967. Bibcode:1953Natur.171..964W. doi:10.1038/171964b0. PMID 13063483. S2CID 4256010.
Nirenberg MW, Matthaei JH (October 1961). "The dependence of cell-free protein synthesis in E. coli upon naturally occurring or synthetic polyribonucleotides". Proceedings of the National Academy of Sciences of the United States of America. 47 (10): 1588–1602. Bibcode:1961PNAS...47.1588N. doi:10.1073/pnas.47.10.1588. PMC 223178. PMID 14479932.
Gardner RS, Wahba AJ, Basilio C, Miller RS, Lengyel P, Speyer JF (December 1962). "Synthetic polynucleotides and the amino acid code. VII". Proceedings of the National Academy of Sciences of the United States of America. 48 (12): 2087–2094. Bibcode:1962PNAS...48.2087G. doi:10.1073/pnas.48.12.2087. PMC 221128. PMID 13946552.
Wahba AJ, Gardner RS, Basilio C, Miller RS, Speyer JF, Lengyel P (January 1963). "Synthetic polynucleotides and the amino acid code. VIII". Proceedings of the National Academy of Sciences of the United States of America. 49 (1): 116–122. Bibcode:1963PNAS...49..116W. doi:10.1073/pnas.49.1.116. PMC 300638. PMID 13998282.
Nirenberg M, Leder P, Bernfield M, Brimacombe R, Trupin J, Rottman F, et al. (May 1965). "RNA codewords and protein synthesis, VII. On the general nature of the RNA code". Proceedings of the National Academy of Sciences of the United States of America. 53 (5): 1161–1168. Bibcode:1965PNAS...53.1161N. doi:10.1073/pnas.53.5.1161. PMC 301388. PMID 5330357.
Hoesl MG, Oehm S, Durkin P, Darmon E, Peil L, Aerni HR, et al. (August 2015). "Chemical Evolution of a Bacterial Proteome". Angewandte Chemie. 54 (34): 10030–10034. Bibcode:2015ACIE...5410030H. doi:10.1002/anie.201502868. PMC 4782924. PMID 26136259. NIHMSID: NIHMS711205
Zhang Y, Lamb BM, Feldman AW, Zhou AX, Lavergne T, Li L, et al. (February 2017). "A semisynthetic organism engineered for the stable expansion of the genetic alphabet". Proceedings of the National Academy of Sciences of the United States of America. 114 (6): 1317–1322. Bibcode:2017PNAS..114.1317Z. doi:10.1073/pnas.1616443114. PMC 5307467. PMID 28115716.
Han S, Yang A, Lee S, Lee HW, Park CB, Park HS (February 2017). "Expanding the genetic code of Mus musculus". Nature Communications. 8 14568. Bibcode:2017NatCo...814568H. doi:10.1038/ncomms14568. PMC 5321798. PMID 28220771.
Fredens J, Wang K, de la Torre D, Funke LF, Robertson WE, Christova Y, et al. (May 2019). "Total synthesis of Escherichia coli with a recoded genome". Nature. 569 (7757): 514–518. Bibcode:2019Natur.569..514F. doi:10.1038/s41586-019-1192-5. PMC 7039709. PMID 31092918. S2CID 205571025.
Chang JC, Kan YW (June 1979). "beta 0 thalassemia, a nonsense mutation in man". Proceedings of the National Academy of Sciences of the United States of America. 76 (6): 2886–2889. Bibcode:1979PNAS...76.2886C. doi:10.1073/pnas.76.6.2886. PMC 383714. PMID 88735.
Crow JF (1993). "How much do we know about spontaneous human mutation rates?". Environmental and Molecular Mutagenesis. 21 (2): 122–129. Bibcode:1993EnvMM..21..122C. doi:10.1002/em.2850210205. PMID 8444142. S2CID 32918971.
Sawyer SA, Parsch J, Zhang Z, Hartl DL (April 2007). "Prevalence of positive selection among nearly neutral amino acid replacements in Drosophila". Proceedings of the National Academy of Sciences of the United States of America. 104 (16): 6504–6510. Bibcode:2007PNAS..104.6504S. doi:10.1073/pnas.0701572104. PMC 1871816. PMID 17409186.
Drake JW, Holland JJ (November 1999). "Mutation rates among RNA viruses". Proceedings of the National Academy of Sciences of the United States of America. 96 (24): 13910–13913. Bibcode:1999PNAS...9613910D. doi:10.1073/pnas.96.24.13910. PMC 24164. PMID 10570172.
Holland J, Spindler K, Horodyski F, Grabau E, Nichol S, VandePol S (March 1982). "Rapid evolution of RNA genomes". Science. 215 (4540): 1577–1585. Bibcode:1982Sci...215.1577H. doi:10.1126/science.7041255. PMID 7041255.
Prat L, Heinemann IU, Aerni HR, Rinehart J, O'Donoghue P, Söll D (December 2012). "Carbon source-dependent expansion of the genetic code in bacteria". Proceedings of the National Academy of Sciences of the United States of America. 109 (51): 21070–21075. Bibcode:2012PNAS..10921070P. doi:10.1073/pnas.1218613110. PMC 3529041. PMID 23185002.
Barrell BG, Bankier AT, Drouin J (November 1979). "A different genetic code in human mitochondria". Nature. 282 (5735): 189–194. Bibcode:1979Natur.282..189B. doi:10.1038/282189a0. PMID 226894. S2CID 4335828.
Butler G, Rasmussen MD, Lin MF, Santos MA, Sakthikumar S, Munro CA, et al. (June 2009). "Evolution of pathogenicity and sexual reproduction in eight Candida genomes". Nature. 459 (7247): 657–662. Bibcode:2009Natur.459..657B. doi:10.1038/nature08064. PMC 2834264. PMID 19465905.
Kubyshkin V, Acevedo-Rocha CG, Budisa N (February 2018). "On universal coding events in protein biogenesis". Bio Systems. 164: 16–25. Bibcode:2018BiSys.164...16K. doi:10.1016/j.biosystems.2017.10.004. PMID 29030023.
Sengupta S, Higgs PG (June 2015). "Pathways of Genetic Code Evolution in Ancient and Modern Organisms". Journal of Molecular Evolution. 80 (5–6): 229–243. Bibcode:2015JMolE..80..229S. doi:10.1007/s00239-015-9686-8. PMID 26054480. S2CID 15542587.
Ribas de Pouplana L, Turner RJ, Steer BA, Schimmel P (September 1998). "Genetic code origins: tRNAs older than their synthetases?". Proceedings of the National Academy of Sciences of the United States of America. 95 (19): 11295–11300. Bibcode:1998PNAS...9511295D. doi:10.1073/pnas.95.19.11295. PMC 21636. PMID 9736730.
Koonin EV (May 2017). "Frozen Accident Pushing 50: Stereochemistry, Expansion, and Chance in the Evolution of the Genetic Code". Life. 7 (2): 22. Bibcode:2017Life....7...22K. doi:10.3390/life7020022. PMC 5492144. PMID 28545255.
Erives A (August 2011). "A model of proto-anti-codon RNA enzymes requiring L-amino acid homochirality". Journal of Molecular Evolution. 73 (1–2): 10–22. Bibcode:2011JMolE..73...10E. doi:10.1007/s00239-011-9453-4. PMC 3223571. PMID 21779963.
Freeland SJ, Hurst LD (September 1998). "The genetic code is one in a million". Journal of Molecular Evolution. 47 (3): 238–248. Bibcode:1998JMolE..47..238F. doi:10.1007/PL00006381. PMID 9732450. S2CID 20130470.
Taylor FJ, Coates D (1989). "The code within the codons". Bio Systems. 22 (3): 177–187. Bibcode:1989BiSys..22..177T. doi:10.1016/0303-2647(89)90059-2. PMID 2650752.
Di Giulio M (October 1989). "The extension reached by the minimization of the polarity distances during the evolution of the genetic code". Journal of Molecular Evolution. 29 (4): 288–293. Bibcode:1989JMolE..29..288D. doi:10.1007/BF02103616. PMID 2514270. S2CID 20803686.
Wong JT (February 1980). "Role of minimization of chemical distances between amino acids in the evolution of the genetic code". Proceedings of the National Academy of Sciences of the United States of America. 77 (2): 1083–1086. Bibcode:1980PNAS...77.1083W. doi:10.1073/pnas.77.2.1083. PMC 348428. PMID 6928661.
Hopfield JJ (September 1978). "Origin of the genetic code: a testable hypothesis based on tRNA structure, sequence, and kinetic proofreading". Proceedings of the National Academy of Sciences of the United States of America. 75 (9): 4334–4338. Bibcode:1978PNAS...75.4334H. doi:10.1073/pnas.75.9.4334. PMC 336109. PMID 279919.
Yarus M, Widmann JJ, Knight R (November 2009). "RNA-amino acid binding: a stereochemical era for the genetic code". Journal of Molecular Evolution. 69 (5): 406–429. Bibcode:2009JMolE..69..406Y. doi:10.1007/s00239-009-9270-1. PMID 19795157.
Brown SM, Voráček V, Freeland S (May 2023). "What Would an Alien Amino Acid Alphabet Look Like and Why?". Astrobiology. 23 (5): 536–549. Bibcode:2023AsBio..23..536B. doi:10.1089/ast.2022.0107. PMID 37022727. S2CID 257983174.
Amirnovin R (May 1997). "An analysis of the metabolic theory of the origin of the genetic code". Journal of Molecular Evolution. 44 (5): 473–476. Bibcode:1997JMolE..44..473A. doi:10.1007/PL00006170. PMID 9115171. S2CID 23334860.
Ronneberg TA, Landweber LF, Freeland SJ (December 2000). "Testing a biosynthetic theory of the genetic code: fact or artifact?". Proceedings of the National Academy of Sciences of the United States of America. 97 (25): 13690–13695. Bibcode:2000PNAS...9713690R. doi:10.1073/pnas.250403097. PMC 17637. PMID 11087835.
Higgs PG, Pudritz RE (June 2009). "A thermodynamic basis for prebiotic amino acid synthesis and the nature of the first genetic code". Astrobiology. 9 (5): 483–490. arXiv:0904.0402. Bibcode:2009AsBio...9..483H. doi:10.1089/ast.2008.0280. PMID 19566427. S2CID 9039622.
Wehbi S, Wheeler A, Morel B, Manepalli N, Minh BQ, Lauretta DS, et al. (December 2024). "Order of amino acid recruitment into the genetic code resolved by last universal common ancestor's protein domains". Proceedings of the National Academy of Sciences of the United States of America. 121 (52) e2410311121. Bibcode:2024PNAS..12110311W. doi:10.1073/pnas.2410311121. PMC 11670089. PMID 39665745.
Freeland SJ, Wu T, Keulmann N (October 2003). "The case for an error minimizing standard genetic code". Origins of Life and Evolution of the Biosphere. 33 (4–5): 457–477. Bibcode:2003OLEB...33..457F. doi:10.1023/A:1025771327614. PMID 14604186. S2CID 18823745.
Baranov PV, Venin M, Provan G (May 2009). Gemmell NJ (ed.). "Codon size reduction as the origin of the triplet genetic code". PLOS ONE. 4 (5) e5708. Bibcode:2009PLoSO...4.5708B. doi:10.1371/journal.pone.0005708. PMC 2682656. PMID 19479032.
Tlusty T (November 2007). "A model for the emergence of the genetic code as a transition in a noisy information channel". Journal of Theoretical Biology. 249 (2): 331–342. arXiv:1007.4122. Bibcode:2007JThBi.249..331T. doi:10.1016/j.jtbi.2007.07.029. PMID 17826800. S2CID 12206140.
Tlusty T (February 2008). "Rate-distortion scenario for the emergence and evolution of noisy molecular codes". Physical Review Letters. 100 (4) 048101. arXiv:1007.4149. Bibcode:2008PhRvL.100d8101T. doi:10.1103/PhysRevLett.100.048101. PMID 18352335. S2CID 12246664.
Sella G, Ardell DH (September 2006). "The coevolution of genes and genetic codes: Crick's frozen accident revisited". Journal of Molecular Evolution. 63 (3): 297–313. Bibcode:2006JMolE..63..297S. doi:10.1007/s00239-004-0176-7. PMID 16838217. S2CID 1260806.
Tlusty T (September 2010). "A colorful origin for the genetic code: information theory, statistical mechanics and the emergence of molecular codes". Physics of Life Reviews. 7 (3): 362–376. arXiv:1007.3906. Bibcode:2010PhLRv...7..362T. doi:10.1016/j.plrev.2010.06.002. PMID 20558115. S2CID 1845965.

sickle.bwh.harvard.edu

KR B (2002). "Malaria and the Red Cell". Harvard. Archived from the original on 27 November 2011.

jstor.org (Global: 26^th place; English: 20^th place)

Hayes B (1998). "Computing Science: The Invention of the Genetic Code". American Scientist. 86 (1): 8–14. doi:10.1511/1998.17.3338. ISSN 0003-0996. JSTOR 27856930. S2CID 121907709.

kazusa.or.jp (Global: low place; English: low place)

"Codon usage table". www.kazusa.or.jp.

kurzweilai.net (Global: low place; English: low place)

"First stable semisynthetic organism created". Kurzweil Library. 3 February 2017. Retrieved 9 February 2017.

nih.gov (Global: 4^th place; English: 4^th place)

pubmed.ncbi.nlm.nih.gov

Turanov AA, Lobanov AV, Fomenko DE, Morrison HG, Sogin ML, Klobutcher LA, et al. (January 2009). "Genetic code supports targeted insertion of two amino acids by one codon". Science. 323 (5911): 259–261. doi:10.1126/science.1164748. PMC 3088105. PMID 19131629.
Watson JD, Crick FH (May 1953). "Genetical implications of the structure of deoxyribonucleic acid". Nature. 171 (4361): 964–967. Bibcode:1953Natur.171..964W. doi:10.1038/171964b0. PMID 13063483. S2CID 4256010.
Stegmann UE (September 2016). "'Genetic Coding' Reconsidered: An Analysis of Actual Usage". The British Journal for the Philosophy of Science. 67 (3): 707–730. doi:10.1093/bjps/axv007. PMC 4990703. PMID 27924115.
Strauss BS (March 2019). "Martynas Yčas: The "Archivist" of the RNA Tie Club". Genetics. 211 (3): 789–795. doi:10.1534/genetics.118.301754. PMC 6404253. PMID 30846543.
Barciszewska MZ, Perrigue PM, Barciszewski J (January 2016). "tRNA--the golden standard in molecular biology". Molecular Biosystems. 12 (1): 12–17. doi:10.1039/c5mb00557d. PMID 26549858.
Yanofsky C (March 2007). "Establishing the triplet nature of the genetic code". Cell. 128 (5): 815–818. doi:10.1016/j.cell.2007.02.029. PMID 17350564. S2CID 14249277.
Nirenberg MW, Matthaei JH (October 1961). "The dependence of cell-free protein synthesis in E. coli upon naturally occurring or synthetic polyribonucleotides". Proceedings of the National Academy of Sciences of the United States of America. 47 (10): 1588–1602. Bibcode:1961PNAS...47.1588N. doi:10.1073/pnas.47.10.1588. PMC 223178. PMID 14479932.
Gardner RS, Wahba AJ, Basilio C, Miller RS, Lengyel P, Speyer JF (December 1962). "Synthetic polynucleotides and the amino acid code. VII". Proceedings of the National Academy of Sciences of the United States of America. 48 (12): 2087–2094. Bibcode:1962PNAS...48.2087G. doi:10.1073/pnas.48.12.2087. PMC 221128. PMID 13946552.
Wahba AJ, Gardner RS, Basilio C, Miller RS, Speyer JF, Lengyel P (January 1963). "Synthetic polynucleotides and the amino acid code. VIII". Proceedings of the National Academy of Sciences of the United States of America. 49 (1): 116–122. Bibcode:1963PNAS...49..116W. doi:10.1073/pnas.49.1.116. PMC 300638. PMID 13998282.
Nirenberg M, Leder P, Bernfield M, Brimacombe R, Trupin J, Rottman F, et al. (May 1965). "RNA codewords and protein synthesis, VII. On the general nature of the RNA code". Proceedings of the National Academy of Sciences of the United States of America. 53 (5): 1161–1168. Bibcode:1965PNAS...53.1161N. doi:10.1073/pnas.53.5.1161. PMC 301388. PMID 5330357.
Edgar B (October 2004). "The genome of bacteriophage T4: an archeological dig". Genetics. 168 (2): 575–582. doi:10.1093/genetics/168.2.575. PMC 1448817. PMID 15514035.
Kubyshkin V, Budisa N (August 2017). "Synthetic alienation of microbial organisms by using genetic code engineering: Why and how?". Biotechnology Journal. 12 (8) 1600097: 16000933. doi:10.1002/biot.201600097. PMID 28671771.
Xie J, Schultz PG (December 2005). "Adding amino acids to the genetic repertoire". Current Opinion in Chemical Biology. 9 (6): 548–554. doi:10.1016/j.cbpa.2005.10.011. PMID 16260173.
Wang Q, Parrish AR, Wang L (March 2009). "Expanding the genetic code for biological studies". Chemistry & Biology. 16 (3): 323–336. doi:10.1016/j.chembiol.2009.03.001. PMC 2696486. PMID 19318213.
Hoesl MG, Oehm S, Durkin P, Darmon E, Peil L, Aerni HR, et al. (August 2015). "Chemical Evolution of a Bacterial Proteome". Angewandte Chemie. 54 (34): 10030–10034. Bibcode:2015ACIE...5410030H. doi:10.1002/anie.201502868. PMC 4782924. PMID 26136259. NIHMSID: NIHMS711205
Zhang Y, Lamb BM, Feldman AW, Zhou AX, Lavergne T, Li L, et al. (February 2017). "A semisynthetic organism engineered for the stable expansion of the genetic alphabet". Proceedings of the National Academy of Sciences of the United States of America. 114 (6): 1317–1322. Bibcode:2017PNAS..114.1317Z. doi:10.1073/pnas.1616443114. PMC 5307467. PMID 28115716.
Han S, Yang A, Lee S, Lee HW, Park CB, Park HS (February 2017). "Expanding the genetic code of Mus musculus". Nature Communications. 8 14568. Bibcode:2017NatCo...814568H. doi:10.1038/ncomms14568. PMC 5321798. PMID 28220771.
Fredens J, Wang K, de la Torre D, Funke LF, Robertson WE, Christova Y, et al. (May 2019). "Total synthesis of Escherichia coli with a recoded genome". Nature. 569 (7757): 514–518. Bibcode:2019Natur.569..514F. doi:10.1038/s41586-019-1192-5. PMC 7039709. PMID 31092918. S2CID 205571025.
Robertson WE, Rehm FB, Spinck M, Schumann RL, Tian R, Liu W, et al. (July 2025). "Escherichia coli with a 57-codon genetic code". Science. 390 (6771) eady4368. bioRxiv 10.1101/2025.05.02.651837. doi:10.1126/science.ady4368. PMID 40743368.
Touriol C, Bornes S, Bonnal S, Audigier S, Prats H, Prats AC, et al. (2003). "Generation of protein isoform diversity by alternative initiation of translation at non-AUG codons". Biology of the Cell. 95 (3–4): 169–178. doi:10.1016/S0248-4900(03)00033-9. PMID 12867081.
Freisinger E, Grollman AP, Miller H, Kisker C (April 2004). "Lesion (in)tolerance reveals insights into DNA replication fidelity". The EMBO Journal. 23 (7): 1494–1505. doi:10.1038/sj.emboj.7600158. PMC 391067. PMID 15057282.
Chang JC, Kan YW (June 1979). "beta 0 thalassemia, a nonsense mutation in man". Proceedings of the National Academy of Sciences of the United States of America. 76 (6): 2886–2889. Bibcode:1979PNAS...76.2886C. doi:10.1073/pnas.76.6.2886. PMC 383714. PMID 88735.
Boillée S, Vande Velde C, Cleveland DW (October 2006). "ALS: a disease of motor neurons and their nonneuronal neighbors". Neuron. 52 (1): 39–59. doi:10.1016/j.neuron.2006.09.018. PMID 17015226.
Isbrandt D, Hopwood JJ, von Figura K, Peters C (1996). "Two novel frameshift mutations causing premature stop codons in a patient with the severe form of Maroteaux-Lamy syndrome". Human Mutation. 7 (4): 361–363. doi:10.1002/(SICI)1098-1004(1996)7:4<361::AID-HUMU12>3.0.CO;2-0. PMID 8723688. S2CID 22693748.
Crow JF (1993). "How much do we know about spontaneous human mutation rates?". Environmental and Molecular Mutagenesis. 21 (2): 122–129. Bibcode:1993EnvMM..21..122C. doi:10.1002/em.2850210205. PMID 8444142. S2CID 32918971.
Sawyer SA, Parsch J, Zhang Z, Hartl DL (April 2007). "Prevalence of positive selection among nearly neutral amino acid replacements in Drosophila". Proceedings of the National Academy of Sciences of the United States of America. 104 (16): 6504–6510. Bibcode:2007PNAS..104.6504S. doi:10.1073/pnas.0701572104. PMC 1871816. PMID 17409186.
Drake JW, Holland JJ (November 1999). "Mutation rates among RNA viruses". Proceedings of the National Academy of Sciences of the United States of America. 96 (24): 13910–13913. Bibcode:1999PNAS...9613910D. doi:10.1073/pnas.96.24.13910. PMC 24164. PMID 10570172.
Holland J, Spindler K, Horodyski F, Grabau E, Nichol S, VandePol S (March 1982). "Rapid evolution of RNA genomes". Science. 215 (4540): 1577–1585. Bibcode:1982Sci...215.1577H. doi:10.1126/science.7041255. PMID 7041255.
de Visser JA, Rozen DE (April 2006). "Clonal interference and the periodic selection of new beneficial mutations in Escherichia coli". Genetics. 172 (4): 2093–2100. doi:10.1534/genetics.105.052373. PMC 1456385. PMID 16489229.
Fricke M, Gerst R, Ibrahim B, Niepmann M, Marz M (February 2019). "Global importance of RNA secondary structures in protein-coding sequences". Bioinformatics. 35 (4): 579–583. doi:10.1093/bioinformatics/bty678. PMC 7109657. PMID 30101307. S2CID 51968530.
Zhang Y, Baranov PV, Atkins JF, Gladyshev VN (May 2005). "Pyrrolysine and selenocysteine use dissimilar decoding strategies". The Journal of Biological Chemistry. 280 (21): 20740–20751. doi:10.1074/jbc.M501458200. PMID 15788401.
Prat L, Heinemann IU, Aerni HR, Rinehart J, O'Donoghue P, Söll D (December 2012). "Carbon source-dependent expansion of the genetic code in bacteria". Proceedings of the National Academy of Sciences of the United States of America. 109 (51): 21070–21075. Bibcode:2012PNAS..10921070P. doi:10.1073/pnas.1218613110. PMC 3529041. PMID 23185002.
Dutilh BE, Jurgelenaite R, Szklarczyk R, van Hijum SA, Harhangi HR, Schmid M, et al. (July 2011). "FACIL: Fast and Accurate Genetic Code Inference and Logo". Bioinformatics. 27 (14): 1929–1933. doi:10.1093/bioinformatics/btr316. PMC 3129529. PMID 21653513.
Crick FH (December 1968). "The origin of the genetic code". Journal of Molecular Biology. 38 (3): 367–379. doi:10.1016/0022-2836(68)90392-6. PMID 4887876.
Barrell BG, Bankier AT, Drouin J (November 1979). "A different genetic code in human mitochondria". Nature. 282 (5735): 189–194. Bibcode:1979Natur.282..189B. doi:10.1038/282189a0. PMID 226894. S2CID 4335828.
Jukes TH, Osawa S (December 1990). "The genetic code in mitochondria and chloroplasts". Experientia. 46 (11–12): 1117–1126. doi:10.1007/BF01936921. PMID 2253709. S2CID 19264964.
Fitzpatrick DA, Logue ME, Stajich JE, Butler G (November 2006). "A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis". BMC Evolutionary Biology. 6: 99. doi:10.1186/1471-2148-6-99. PMC 1679813. PMID 17121679.
Santos MA, Tuite MF (May 1995). "The CUG codon is decoded in vivo as serine and not leucine in Candida albicans". Nucleic Acids Research. 23 (9): 1481–1486. doi:10.1093/nar/23.9.1481. PMC 306886. PMID 7784200.
Butler G, Rasmussen MD, Lin MF, Santos MA, Sakthikumar S, Munro CA, et al. (June 2009). "Evolution of pathogenicity and sexual reproduction in eight Candida genomes". Nature. 459 (7247): 657–662. Bibcode:2009Natur.459..657B. doi:10.1038/nature08064. PMC 2834264. PMID 19465905.
Taylor DJ, Ballinger MJ, Bowman SM, Bruenn JA (2013). "Virus-host co-evolution under a modified nuclear genetic code". PeerJ. 1 e50. doi:10.7717/peerj.50. PMC 3628385. PMID 23638388.
Hofhuis J, Schueren F, Nötzel C, Lingner T, Gärtner J, Jahn O, et al. (November 2016). "The functional readthrough extension of malate dehydrogenase reveals a modification of the genetic code". Open Biology. 6 (11) 160246. doi:10.1098/rsob.160246. PMC 5133446. PMID 27881739.
Schueren F, Lingner T, George R, Hofhuis J, Dickel C, Gärtner J, et al. (September 2014). "Peroxisomal lactate dehydrogenase is generated by translational readthrough in mammals". eLife. 3 e03640. doi:10.7554/eLife.03640. PMC 4359377. PMID 25247702.
Schueren F, Thoms S (August 2016). "Functional Translational Readthrough: A Systems Biology Perspective". PLOS Genetics. 12 (8) e1006196. doi:10.1371/journal.pgen.1006196. PMC 4973966. PMID 27490485.
Kubyshkin V, Acevedo-Rocha CG, Budisa N (February 2018). "On universal coding events in protein biogenesis". Bio Systems. 164: 16–25. Bibcode:2018BiSys.164...16K. doi:10.1016/j.biosystems.2017.10.004. PMID 29030023.
Heaphy SM, Mariotti M, Gladyshev VN, Atkins JF, Baranov PV (November 2016). "Novel Ciliate Genetic Code Variants Including the Reassignment of All Three Stop Codons to Sense Codons in Condylostoma magnum". Molecular Biology and Evolution. 33 (11): 2885–2889. doi:10.1093/molbev/msw166. PMC 5062323. PMID 27501944.
Lobanov AV, Heaphy SM, Turanov AA, Gerashchenko MV, Pucciarelli S, Devaraj RR, et al. (January 2017). "Position-dependent termination and widespread obligatory frameshifting in Euplotes translation". Nature Structural & Molecular Biology. 24 (1): 61–68. doi:10.1038/nsmb.3330. PMC 5295771. PMID 27870834.
Koonin EV, Novozhilov AS (February 2009). "Origin and evolution of the genetic code: the universal enigma". IUBMB Life. 61 (2): 99–111. doi:10.1002/iub.146. PMC 3293468. PMID 19117371.
Sengupta S, Higgs PG (June 2015). "Pathways of Genetic Code Evolution in Ancient and Modern Organisms". Journal of Molecular Evolution. 80 (5–6): 229–243. Bibcode:2015JMolE..80..229S. doi:10.1007/s00239-015-9686-8. PMID 26054480. S2CID 15542587.
Xie J, Schultz PG (October 2006). "A chemical toolkit for proteins--an expanded genetic code". Nature Reviews Molecular Cell Biology. 7 (10): 775–782. doi:10.1038/nrm2005. PMID 16926858. S2CID 19385756.
Liu CC, Schultz PG (2010). "Adding new chemistries to the genetic code". Annual Review of Biochemistry. 79: 413–444. doi:10.1146/annurev.biochem.052308.105824. PMID 20307192.
Chin JW (February 2014). "Expanding and reprogramming the genetic code of cells and animals". Annual Review of Biochemistry. 83: 379–408. doi:10.1146/annurev-biochem-060713-035737. PMID 24555827.
Shulgina Y, Eddy SR (November 2021). "A computational screen for alternative genetic codes in over 250,000 genomes". eLife. 10 e71402. doi:10.7554/eLife.71402. PMC 8629427. PMID 34751130.
Chen W, Geng Y, Zhang B, Yan Y, Zhao F, Miao M (April 2023). "Stop or Not: Genome-Wide Profiling of Reassigned Stop Codons in Ciliates". Molecular Biology and Evolution. 40 (4) msad064. doi:10.1093/molbev/msad064. PMC 10089648. PMID 36952281.
Fried SD, Fujishima K, Makarov M, Cherepashuk I, Hlouchova K (February 2022). "Peptides before and during the nucleotide world: an origins story emphasizing cooperation between proteins and nucleic acids". Journal of the Royal Society, Interface. 19 (187) 20210641. doi:10.1098/rsif.2021.0641. PMC 8833103. PMID 35135297.
Ribas de Pouplana L, Turner RJ, Steer BA, Schimmel P (September 1998). "Genetic code origins: tRNAs older than their synthetases?". Proceedings of the National Academy of Sciences of the United States of America. 95 (19): 11295–11300. Bibcode:1998PNAS...9511295D. doi:10.1073/pnas.95.19.11295. PMC 21636. PMID 9736730.
Koonin EV (May 2017). "Frozen Accident Pushing 50: Stereochemistry, Expansion, and Chance in the Evolution of the Genetic Code". Life. 7 (2): 22. Bibcode:2017Life....7...22K. doi:10.3390/life7020022. PMC 5492144. PMID 28545255.
Erives A (August 2011). "A model of proto-anti-codon RNA enzymes requiring L-amino acid homochirality". Journal of Molecular Evolution. 73 (1–2): 10–22. Bibcode:2011JMolE..73...10E. doi:10.1007/s00239-011-9453-4. PMC 3223571. PMID 21779963.
Freeland SJ, Hurst LD (September 1998). "The genetic code is one in a million". Journal of Molecular Evolution. 47 (3): 238–248. Bibcode:1998JMolE..47..238F. doi:10.1007/PL00006381. PMID 9732450. S2CID 20130470.
Taylor FJ, Coates D (1989). "The code within the codons". Bio Systems. 22 (3): 177–187. Bibcode:1989BiSys..22..177T. doi:10.1016/0303-2647(89)90059-2. PMID 2650752.
Di Giulio M (October 1989). "The extension reached by the minimization of the polarity distances during the evolution of the genetic code". Journal of Molecular Evolution. 29 (4): 288–293. Bibcode:1989JMolE..29..288D. doi:10.1007/BF02103616. PMID 2514270. S2CID 20803686.
Wong JT (February 1980). "Role of minimization of chemical distances between amino acids in the evolution of the genetic code". Proceedings of the National Academy of Sciences of the United States of America. 77 (2): 1083–1086. Bibcode:1980PNAS...77.1083W. doi:10.1073/pnas.77.2.1083. PMC 348428. PMID 6928661.
Freeland SJ, Knight RD, Landweber LF, Hurst LD (April 2000). "Early fixation of an optimal genetic code". Molecular Biology and Evolution. 17 (4): 511–518. doi:10.1093/oxfordjournals.molbev.a026331. PMID 10742043.
Hopfield JJ (September 1978). "Origin of the genetic code: a testable hypothesis based on tRNA structure, sequence, and kinetic proofreading". Proceedings of the National Academy of Sciences of the United States of America. 75 (9): 4334–4338. Bibcode:1978PNAS...75.4334H. doi:10.1073/pnas.75.9.4334. PMC 336109. PMID 279919.
Yarus M, Widmann JJ, Knight R (November 2009). "RNA-amino acid binding: a stereochemical era for the genetic code". Journal of Molecular Evolution. 69 (5): 406–429. Bibcode:2009JMolE..69..406Y. doi:10.1007/s00239-009-9270-1. PMID 19795157.
Brown SM, Voráček V, Freeland S (May 2023). "What Would an Alien Amino Acid Alphabet Look Like and Why?". Astrobiology. 23 (5): 536–549. Bibcode:2023AsBio..23..536B. doi:10.1089/ast.2022.0107. PMID 37022727. S2CID 257983174.
Knight RD, Freeland SJ, Landweber LF (June 1999). "Selection, history and chemistry: the three faces of the genetic code". Trends in Biochemical Sciences. 24 (6): 241–247. doi:10.1016/S0968-0004(99)01392-4. PMID 10366854.
Knight RD, Landweber LF (September 1998). "Rhyme or reason: RNA-arginine interactions and the genetic code". Chemistry & Biology. 5 (9): R215 – R220. doi:10.1016/S1074-5521(98)90001-1. PMID 9751648.
Brooks DJ, Fresco JR, Lesk AM, Singh M (October 2002). "Evolution of amino acid frequencies in proteins over deep time: inferred order of introduction of amino acids into the genetic code". Molecular Biology and Evolution. 19 (10): 1645–1655. doi:10.1093/oxfordjournals.molbev.a003988. PMID 12270892.
Amirnovin R (May 1997). "An analysis of the metabolic theory of the origin of the genetic code". Journal of Molecular Evolution. 44 (5): 473–476. Bibcode:1997JMolE..44..473A. doi:10.1007/PL00006170. PMID 9115171. S2CID 23334860.
Ronneberg TA, Landweber LF, Freeland SJ (December 2000). "Testing a biosynthetic theory of the genetic code: fact or artifact?". Proceedings of the National Academy of Sciences of the United States of America. 97 (25): 13690–13695. Bibcode:2000PNAS...9713690R. doi:10.1073/pnas.250403097. PMC 17637. PMID 11087835.
Trifonov EN (September 2009). "The origin of the genetic code and of the earliest oligopeptides". Research in Microbiology. 160 (7): 481–486. doi:10.1016/j.resmic.2009.05.004. PMID 19524038.
Higgs PG, Pudritz RE (June 2009). "A thermodynamic basis for prebiotic amino acid synthesis and the nature of the first genetic code". Astrobiology. 9 (5): 483–490. arXiv:0904.0402. Bibcode:2009AsBio...9..483H. doi:10.1089/ast.2008.0280. PMID 19566427. S2CID 9039622.
Chaliotis A, Vlastaridis P, Mossialos D, Ibba M, Becker HD, Stathopoulos C, et al. (February 2017). "The complex evolutionary history of aminoacyl-tRNA synthetases". Nucleic Acids Research. 45 (3): 1059–1068. doi:10.1093/nar/gkw1182. PMC 5388404. PMID 28180287.
Ntountoumi C, Vlastaridis P, Mossialos D, Stathopoulos C, Iliopoulos I, Promponas V, et al. (November 2019). "Low complexity regions in the proteins of prokaryotes perform important functional roles and are highly conserved". Nucleic Acids Research. 47 (19): 9998–10009. doi:10.1093/nar/gkz730. PMC 6821194. PMID 31504783.
Wehbi S, Wheeler A, Morel B, Manepalli N, Minh BQ, Lauretta DS, et al. (December 2024). "Order of amino acid recruitment into the genetic code resolved by last universal common ancestor's protein domains". Proceedings of the National Academy of Sciences of the United States of America. 121 (52) e2410311121. Bibcode:2024PNAS..12110311W. doi:10.1073/pnas.2410311121. PMC 11670089. PMID 39665745.
Freeland SJ, Wu T, Keulmann N (October 2003). "The case for an error minimizing standard genetic code". Origins of Life and Evolution of the Biosphere. 33 (4–5): 457–477. Bibcode:2003OLEB...33..457F. doi:10.1023/A:1025771327614. PMID 14604186. S2CID 18823745.
Baranov PV, Venin M, Provan G (May 2009). Gemmell NJ (ed.). "Codon size reduction as the origin of the triplet genetic code". PLOS ONE. 4 (5) e5708. Bibcode:2009PLoSO...4.5708B. doi:10.1371/journal.pone.0005708. PMC 2682656. PMID 19479032.
Tlusty T (November 2007). "A model for the emergence of the genetic code as a transition in a noisy information channel". Journal of Theoretical Biology. 249 (2): 331–342. arXiv:1007.4122. Bibcode:2007JThBi.249..331T. doi:10.1016/j.jtbi.2007.07.029. PMID 17826800. S2CID 12206140.
Tlusty T (February 2008). "Rate-distortion scenario for the emergence and evolution of noisy molecular codes". Physical Review Letters. 100 (4) 048101. arXiv:1007.4149. Bibcode:2008PhRvL.100d8101T. doi:10.1103/PhysRevLett.100.048101. PMID 18352335. S2CID 12246664.
Sella G, Ardell DH (September 2006). "The coevolution of genes and genetic codes: Crick's frozen accident revisited". Journal of Molecular Evolution. 63 (3): 297–313. Bibcode:2006JMolE..63..297S. doi:10.1007/s00239-004-0176-7. PMID 16838217. S2CID 1260806.
Tlusty T (September 2010). "A colorful origin for the genetic code: information theory, statistical mechanics and the emergence of molecular codes". Physics of Life Reviews. 7 (3): 362–376. arXiv:1007.3906. Bibcode:2010PhLRv...7..362T. doi:10.1016/j.plrev.2010.06.002. PMID 20558115. S2CID 1845965.
Jee J, Sundstrom A, Massey SE, Mishra B (November 2013). "What can information-asymmetric games tell us about the context of Crick's 'frozen accident'?". Journal of the Royal Society, Interface. 10 (88) 20130614. doi:10.1098/rsif.2013.0614. PMC 3785830. PMID 23985735.
Itzkovitz S, Alon U (April 2007). "The genetic code is nearly optimal for allowing additional information within protein-coding sequences". Genome Research. 17 (4): 405–412. doi:10.1101/gr.5987307. PMC 1832087. PMID 17293451.

ncbi.nlm.nih.gov

Turanov AA, Lobanov AV, Fomenko DE, Morrison HG, Sogin ML, Klobutcher LA, et al. (January 2009). "Genetic code supports targeted insertion of two amino acids by one codon". Science. 323 (5911): 259–261. doi:10.1126/science.1164748. PMC 3088105. PMID 19131629.
Stegmann UE (September 2016). "'Genetic Coding' Reconsidered: An Analysis of Actual Usage". The British Journal for the Philosophy of Science. 67 (3): 707–730. doi:10.1093/bjps/axv007. PMC 4990703. PMID 27924115.
Strauss BS (March 2019). "Martynas Yčas: The "Archivist" of the RNA Tie Club". Genetics. 211 (3): 789–795. doi:10.1534/genetics.118.301754. PMC 6404253. PMID 30846543.
Nirenberg MW, Matthaei JH (October 1961). "The dependence of cell-free protein synthesis in E. coli upon naturally occurring or synthetic polyribonucleotides". Proceedings of the National Academy of Sciences of the United States of America. 47 (10): 1588–1602. Bibcode:1961PNAS...47.1588N. doi:10.1073/pnas.47.10.1588. PMC 223178. PMID 14479932.
Gardner RS, Wahba AJ, Basilio C, Miller RS, Lengyel P, Speyer JF (December 1962). "Synthetic polynucleotides and the amino acid code. VII". Proceedings of the National Academy of Sciences of the United States of America. 48 (12): 2087–2094. Bibcode:1962PNAS...48.2087G. doi:10.1073/pnas.48.12.2087. PMC 221128. PMID 13946552.
Wahba AJ, Gardner RS, Basilio C, Miller RS, Speyer JF, Lengyel P (January 1963). "Synthetic polynucleotides and the amino acid code. VIII". Proceedings of the National Academy of Sciences of the United States of America. 49 (1): 116–122. Bibcode:1963PNAS...49..116W. doi:10.1073/pnas.49.1.116. PMC 300638. PMID 13998282.
Nirenberg M, Leder P, Bernfield M, Brimacombe R, Trupin J, Rottman F, et al. (May 1965). "RNA codewords and protein synthesis, VII. On the general nature of the RNA code". Proceedings of the National Academy of Sciences of the United States of America. 53 (5): 1161–1168. Bibcode:1965PNAS...53.1161N. doi:10.1073/pnas.53.5.1161. PMC 301388. PMID 5330357.
Edgar B (October 2004). "The genome of bacteriophage T4: an archeological dig". Genetics. 168 (2): 575–582. doi:10.1093/genetics/168.2.575. PMC 1448817. PMID 15514035.
Wang Q, Parrish AR, Wang L (March 2009). "Expanding the genetic code for biological studies". Chemistry & Biology. 16 (3): 323–336. doi:10.1016/j.chembiol.2009.03.001. PMC 2696486. PMID 19318213.
Hoesl MG, Oehm S, Durkin P, Darmon E, Peil L, Aerni HR, et al. (August 2015). "Chemical Evolution of a Bacterial Proteome". Angewandte Chemie. 54 (34): 10030–10034. Bibcode:2015ACIE...5410030H. doi:10.1002/anie.201502868. PMC 4782924. PMID 26136259. NIHMSID: NIHMS711205
Zhang Y, Lamb BM, Feldman AW, Zhou AX, Lavergne T, Li L, et al. (February 2017). "A semisynthetic organism engineered for the stable expansion of the genetic alphabet". Proceedings of the National Academy of Sciences of the United States of America. 114 (6): 1317–1322. Bibcode:2017PNAS..114.1317Z. doi:10.1073/pnas.1616443114. PMC 5307467. PMID 28115716.
Han S, Yang A, Lee S, Lee HW, Park CB, Park HS (February 2017). "Expanding the genetic code of Mus musculus". Nature Communications. 8 14568. Bibcode:2017NatCo...814568H. doi:10.1038/ncomms14568. PMC 5321798. PMID 28220771.
Fredens J, Wang K, de la Torre D, Funke LF, Robertson WE, Christova Y, et al. (May 2019). "Total synthesis of Escherichia coli with a recoded genome". Nature. 569 (7757): 514–518. Bibcode:2019Natur.569..514F. doi:10.1038/s41586-019-1192-5. PMC 7039709. PMID 31092918. S2CID 205571025.
Homo sapiens mitochondrion, complete genome. "Revised Cambridge Reference Sequence (rCRS): accession NC_012920", National Center for Biotechnology Information. Retrieved on 27 December 2017.
Griffiths AJ, Miller JH, Suzuki DT, Lewontin RC, Gelbart, eds. (2000). "Spontaneous mutations". An Introduction to Genetic Analysis (7th ed.). New York: W. H. Freeman. ISBN 978-0-7167-3520-5.
Freisinger E, Grollman AP, Miller H, Kisker C (April 2004). "Lesion (in)tolerance reveals insights into DNA replication fidelity". The EMBO Journal. 23 (7): 1494–1505. doi:10.1038/sj.emboj.7600158. PMC 391067. PMID 15057282.
Chang JC, Kan YW (June 1979). "beta 0 thalassemia, a nonsense mutation in man". Proceedings of the National Academy of Sciences of the United States of America. 76 (6): 2886–2889. Bibcode:1979PNAS...76.2886C. doi:10.1073/pnas.76.6.2886. PMC 383714. PMID 88735.
Sawyer SA, Parsch J, Zhang Z, Hartl DL (April 2007). "Prevalence of positive selection among nearly neutral amino acid replacements in Drosophila". Proceedings of the National Academy of Sciences of the United States of America. 104 (16): 6504–6510. Bibcode:2007PNAS..104.6504S. doi:10.1073/pnas.0701572104. PMC 1871816. PMID 17409186.
Drake JW, Holland JJ (November 1999). "Mutation rates among RNA viruses". Proceedings of the National Academy of Sciences of the United States of America. 96 (24): 13910–13913. Bibcode:1999PNAS...9613910D. doi:10.1073/pnas.96.24.13910. PMC 24164. PMID 10570172.
de Visser JA, Rozen DE (April 2006). "Clonal interference and the periodic selection of new beneficial mutations in Escherichia coli". Genetics. 172 (4): 2093–2100. doi:10.1534/genetics.105.052373. PMC 1456385. PMID 16489229.
Fricke M, Gerst R, Ibrahim B, Niepmann M, Marz M (February 2019). "Global importance of RNA secondary structures in protein-coding sequences". Bioinformatics. 35 (4): 579–583. doi:10.1093/bioinformatics/bty678. PMC 7109657. PMID 30101307. S2CID 51968530.
Prat L, Heinemann IU, Aerni HR, Rinehart J, O'Donoghue P, Söll D (December 2012). "Carbon source-dependent expansion of the genetic code in bacteria". Proceedings of the National Academy of Sciences of the United States of America. 109 (51): 21070–21075. Bibcode:2012PNAS..10921070P. doi:10.1073/pnas.1218613110. PMC 3529041. PMID 23185002.
Dutilh BE, Jurgelenaite R, Szklarczyk R, van Hijum SA, Harhangi HR, Schmid M, et al. (July 2011). "FACIL: Fast and Accurate Genetic Code Inference and Logo". Bioinformatics. 27 (14): 1929–1933. doi:10.1093/bioinformatics/btr316. PMC 3129529. PMID 21653513.
Elzanowski A, Ostell J (7 April 2008). "The Genetic Codes". National Center for Biotechnology Information (NCBI). Retrieved 10 March 2010.
Fitzpatrick DA, Logue ME, Stajich JE, Butler G (November 2006). "A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis". BMC Evolutionary Biology. 6: 99. doi:10.1186/1471-2148-6-99. PMC 1679813. PMID 17121679.
Santos MA, Tuite MF (May 1995). "The CUG codon is decoded in vivo as serine and not leucine in Candida albicans". Nucleic Acids Research. 23 (9): 1481–1486. doi:10.1093/nar/23.9.1481. PMC 306886. PMID 7784200.
Butler G, Rasmussen MD, Lin MF, Santos MA, Sakthikumar S, Munro CA, et al. (June 2009). "Evolution of pathogenicity and sexual reproduction in eight Candida genomes". Nature. 459 (7247): 657–662. Bibcode:2009Natur.459..657B. doi:10.1038/nature08064. PMC 2834264. PMID 19465905.
Taylor DJ, Ballinger MJ, Bowman SM, Bruenn JA (2013). "Virus-host co-evolution under a modified nuclear genetic code". PeerJ. 1 e50. doi:10.7717/peerj.50. PMC 3628385. PMID 23638388.
Hofhuis J, Schueren F, Nötzel C, Lingner T, Gärtner J, Jahn O, et al. (November 2016). "The functional readthrough extension of malate dehydrogenase reveals a modification of the genetic code". Open Biology. 6 (11) 160246. doi:10.1098/rsob.160246. PMC 5133446. PMID 27881739.
Schueren F, Lingner T, George R, Hofhuis J, Dickel C, Gärtner J, et al. (September 2014). "Peroxisomal lactate dehydrogenase is generated by translational readthrough in mammals". eLife. 3 e03640. doi:10.7554/eLife.03640. PMC 4359377. PMID 25247702.
Schueren F, Thoms S (August 2016). "Functional Translational Readthrough: A Systems Biology Perspective". PLOS Genetics. 12 (8) e1006196. doi:10.1371/journal.pgen.1006196. PMC 4973966. PMID 27490485.
Heaphy SM, Mariotti M, Gladyshev VN, Atkins JF, Baranov PV (November 2016). "Novel Ciliate Genetic Code Variants Including the Reassignment of All Three Stop Codons to Sense Codons in Condylostoma magnum". Molecular Biology and Evolution. 33 (11): 2885–2889. doi:10.1093/molbev/msw166. PMC 5062323. PMID 27501944.
Lobanov AV, Heaphy SM, Turanov AA, Gerashchenko MV, Pucciarelli S, Devaraj RR, et al. (January 2017). "Position-dependent termination and widespread obligatory frameshifting in Euplotes translation". Nature Structural & Molecular Biology. 24 (1): 61–68. doi:10.1038/nsmb.3330. PMC 5295771. PMID 27870834.
Koonin EV, Novozhilov AS (February 2009). "Origin and evolution of the genetic code: the universal enigma". IUBMB Life. 61 (2): 99–111. doi:10.1002/iub.146. PMC 3293468. PMID 19117371.
Shulgina Y, Eddy SR (November 2021). "A computational screen for alternative genetic codes in over 250,000 genomes". eLife. 10 e71402. doi:10.7554/eLife.71402. PMC 8629427. PMID 34751130.
Chen W, Geng Y, Zhang B, Yan Y, Zhao F, Miao M (April 2023). "Stop or Not: Genome-Wide Profiling of Reassigned Stop Codons in Ciliates". Molecular Biology and Evolution. 40 (4) msad064. doi:10.1093/molbev/msad064. PMC 10089648. PMID 36952281.
Fried SD, Fujishima K, Makarov M, Cherepashuk I, Hlouchova K (February 2022). "Peptides before and during the nucleotide world: an origins story emphasizing cooperation between proteins and nucleic acids". Journal of the Royal Society, Interface. 19 (187) 20210641. doi:10.1098/rsif.2021.0641. PMC 8833103. PMID 35135297.
Ribas de Pouplana L, Turner RJ, Steer BA, Schimmel P (September 1998). "Genetic code origins: tRNAs older than their synthetases?". Proceedings of the National Academy of Sciences of the United States of America. 95 (19): 11295–11300. Bibcode:1998PNAS...9511295D. doi:10.1073/pnas.95.19.11295. PMC 21636. PMID 9736730.
Koonin EV (May 2017). "Frozen Accident Pushing 50: Stereochemistry, Expansion, and Chance in the Evolution of the Genetic Code". Life. 7 (2): 22. Bibcode:2017Life....7...22K. doi:10.3390/life7020022. PMC 5492144. PMID 28545255.
Erives A (August 2011). "A model of proto-anti-codon RNA enzymes requiring L-amino acid homochirality". Journal of Molecular Evolution. 73 (1–2): 10–22. Bibcode:2011JMolE..73...10E. doi:10.1007/s00239-011-9453-4. PMC 3223571. PMID 21779963.
Wong JT (February 1980). "Role of minimization of chemical distances between amino acids in the evolution of the genetic code". Proceedings of the National Academy of Sciences of the United States of America. 77 (2): 1083–1086. Bibcode:1980PNAS...77.1083W. doi:10.1073/pnas.77.2.1083. PMC 348428. PMID 6928661.
Hopfield JJ (September 1978). "Origin of the genetic code: a testable hypothesis based on tRNA structure, sequence, and kinetic proofreading". Proceedings of the National Academy of Sciences of the United States of America. 75 (9): 4334–4338. Bibcode:1978PNAS...75.4334H. doi:10.1073/pnas.75.9.4334. PMC 336109. PMID 279919.
Ronneberg TA, Landweber LF, Freeland SJ (December 2000). "Testing a biosynthetic theory of the genetic code: fact or artifact?". Proceedings of the National Academy of Sciences of the United States of America. 97 (25): 13690–13695. Bibcode:2000PNAS...9713690R. doi:10.1073/pnas.250403097. PMC 17637. PMID 11087835.
Chaliotis A, Vlastaridis P, Mossialos D, Ibba M, Becker HD, Stathopoulos C, et al. (February 2017). "The complex evolutionary history of aminoacyl-tRNA synthetases". Nucleic Acids Research. 45 (3): 1059–1068. doi:10.1093/nar/gkw1182. PMC 5388404. PMID 28180287.
Ntountoumi C, Vlastaridis P, Mossialos D, Stathopoulos C, Iliopoulos I, Promponas V, et al. (November 2019). "Low complexity regions in the proteins of prokaryotes perform important functional roles and are highly conserved". Nucleic Acids Research. 47 (19): 9998–10009. doi:10.1093/nar/gkz730. PMC 6821194. PMID 31504783.
Wehbi S, Wheeler A, Morel B, Manepalli N, Minh BQ, Lauretta DS, et al. (December 2024). "Order of amino acid recruitment into the genetic code resolved by last universal common ancestor's protein domains". Proceedings of the National Academy of Sciences of the United States of America. 121 (52) e2410311121. Bibcode:2024PNAS..12110311W. doi:10.1073/pnas.2410311121. PMC 11670089. PMID 39665745.
Baranov PV, Venin M, Provan G (May 2009). Gemmell NJ (ed.). "Codon size reduction as the origin of the triplet genetic code". PLOS ONE. 4 (5) e5708. Bibcode:2009PLoSO...4.5708B. doi:10.1371/journal.pone.0005708. PMC 2682656. PMID 19479032.
Jee J, Sundstrom A, Massey SE, Mishra B (November 2013). "What can information-asymmetric games tell us about the context of Crick's 'frozen accident'?". Journal of the Royal Society, Interface. 10 (88) 20130614. doi:10.1098/rsif.2013.0614. PMC 3785830. PMID 23985735.
Itzkovitz S, Alon U (April 2007). "The genetic code is nearly optimal for allowing additional information within protein-coding sequences". Genome Research. 17 (4): 405–412. doi:10.1101/gr.5987307. PMC 1832087. PMID 17293451.

profiles.nlm.nih.gov

"Francis Crick - Profiles in Science Search Results". profiles.nlm.nih.gov. Retrieved 21 July 2022.

collections.nlm.nih.gov

Crick F (1955). "On Degenerate Templates and the Adaptor Hypothesis: A Note for the RNA Tie Club". National Library of Medicine. Archived from the original on 16 August 2022. Retrieved 21 July 2022.

nobelprize.org (Global: 301^st place; English: 478^th place)

"The Nobel Prize in Physiology or Medicine 1959" (Press release). The Royal Swedish Academy of Science. 1959. Retrieved 27 February 2010. The Nobel Prize in Physiology or Medicine 1959 was awarded jointly to Severo Ochoa and Arthur Kornberg 'for their discovery of the mechanisms in the biological synthesis of ribonucleic acid and deoxyribonucleic acid'.
"The Nobel Prize in Physiology or Medicine 1968" (Press release). The Royal Swedish Academy of Science. 1968. Retrieved 27 February 2010. The Nobel Prize in Physiology or Medicine 1968 was awarded jointly to Robert W. Holley, Har Gobind Khorana and Marshall W. Nirenberg 'for their interpretation of the genetic code and its function in protein synthesis'.

nytimes.com (Global: 7^th place; English: 7^th place)

Zimmer C (15 May 2019). "Scientists Created Bacteria With a Synthetic Genome. Is This Artificial Life? - In a milestone for synthetic biology, colonies of E. coli thrive with DNA constructed from scratch by humans, not nature". The New York Times. Archived from the original on 2 January 2022. Retrieved 16 May 2019.

sdsu.edu (Global: 3,103^rd place; English: 2,242^nd place)

sci.sdsu.edu

Maloy S (29 November 2003). "How nonsense mutations got their names". Microbial Genetics Course. San Diego State University. Archived from the original on 10 March 2022. Retrieved 10 March 2010.

semanticscholar.org (Global: 11^th place; English: 8^th place)

api.semanticscholar.org

Watson JD, Crick FH (May 1953). "Genetical implications of the structure of deoxyribonucleic acid". Nature. 171 (4361): 964–967. Bibcode:1953Natur.171..964W. doi:10.1038/171964b0. PMID 13063483. S2CID 4256010.
Hayes B (1998). "Computing Science: The Invention of the Genetic Code". American Scientist. 86 (1): 8–14. doi:10.1511/1998.17.3338. ISSN 0003-0996. JSTOR 27856930. S2CID 121907709.
Fry M (2022). "Crick's Adaptor Hypothesis and the Discovery of Transfer RNA: Experiment Surpassing Theoretical Prediction". Philosophy, Theory, and Practice in Biology. 14. doi:10.3998/ptpbio.2628. ISSN 2475-3025. S2CID 249112573.
Yanofsky C (March 2007). "Establishing the triplet nature of the genetic code". Cell. 128 (5): 815–818. doi:10.1016/j.cell.2007.02.029. PMID 17350564. S2CID 14249277.
Fredens J, Wang K, de la Torre D, Funke LF, Robertson WE, Christova Y, et al. (May 2019). "Total synthesis of Escherichia coli with a recoded genome". Nature. 569 (7757): 514–518. Bibcode:2019Natur.569..514F. doi:10.1038/s41586-019-1192-5. PMC 7039709. PMID 31092918. S2CID 205571025.
Isbrandt D, Hopwood JJ, von Figura K, Peters C (1996). "Two novel frameshift mutations causing premature stop codons in a patient with the severe form of Maroteaux-Lamy syndrome". Human Mutation. 7 (4): 361–363. doi:10.1002/(SICI)1098-1004(1996)7:4<361::AID-HUMU12>3.0.CO;2-0. PMID 8723688. S2CID 22693748.
Crow JF (1993). "How much do we know about spontaneous human mutation rates?". Environmental and Molecular Mutagenesis. 21 (2): 122–129. Bibcode:1993EnvMM..21..122C. doi:10.1002/em.2850210205. PMID 8444142. S2CID 32918971.
Fricke M, Gerst R, Ibrahim B, Niepmann M, Marz M (February 2019). "Global importance of RNA secondary structures in protein-coding sequences". Bioinformatics. 35 (4): 579–583. doi:10.1093/bioinformatics/bty678. PMC 7109657. PMID 30101307. S2CID 51968530.
Barrell BG, Bankier AT, Drouin J (November 1979). "A different genetic code in human mitochondria". Nature. 282 (5735): 189–194. Bibcode:1979Natur.282..189B. doi:10.1038/282189a0. PMID 226894. S2CID 4335828.
Jukes TH, Osawa S (December 1990). "The genetic code in mitochondria and chloroplasts". Experientia. 46 (11–12): 1117–1126. doi:10.1007/BF01936921. PMID 2253709. S2CID 19264964.
Sengupta S, Higgs PG (June 2015). "Pathways of Genetic Code Evolution in Ancient and Modern Organisms". Journal of Molecular Evolution. 80 (5–6): 229–243. Bibcode:2015JMolE..80..229S. doi:10.1007/s00239-015-9686-8. PMID 26054480. S2CID 15542587.
Xie J, Schultz PG (October 2006). "A chemical toolkit for proteins--an expanded genetic code". Nature Reviews Molecular Cell Biology. 7 (10): 775–782. doi:10.1038/nrm2005. PMID 16926858. S2CID 19385756.
Freeland SJ, Hurst LD (September 1998). "The genetic code is one in a million". Journal of Molecular Evolution. 47 (3): 238–248. Bibcode:1998JMolE..47..238F. doi:10.1007/PL00006381. PMID 9732450. S2CID 20130470.
Di Giulio M (October 1989). "The extension reached by the minimization of the polarity distances during the evolution of the genetic code". Journal of Molecular Evolution. 29 (4): 288–293. Bibcode:1989JMolE..29..288D. doi:10.1007/BF02103616. PMID 2514270. S2CID 20803686.
Brown SM, Voráček V, Freeland S (May 2023). "What Would an Alien Amino Acid Alphabet Look Like and Why?". Astrobiology. 23 (5): 536–549. Bibcode:2023AsBio..23..536B. doi:10.1089/ast.2022.0107. PMID 37022727. S2CID 257983174.
Amirnovin R (May 1997). "An analysis of the metabolic theory of the origin of the genetic code". Journal of Molecular Evolution. 44 (5): 473–476. Bibcode:1997JMolE..44..473A. doi:10.1007/PL00006170. PMID 9115171. S2CID 23334860.
Higgs PG, Pudritz RE (June 2009). "A thermodynamic basis for prebiotic amino acid synthesis and the nature of the first genetic code". Astrobiology. 9 (5): 483–490. arXiv:0904.0402. Bibcode:2009AsBio...9..483H. doi:10.1089/ast.2008.0280. PMID 19566427. S2CID 9039622.
Freeland SJ, Wu T, Keulmann N (October 2003). "The case for an error minimizing standard genetic code". Origins of Life and Evolution of the Biosphere. 33 (4–5): 457–477. Bibcode:2003OLEB...33..457F. doi:10.1023/A:1025771327614. PMID 14604186. S2CID 18823745.
Tlusty T (November 2007). "A model for the emergence of the genetic code as a transition in a noisy information channel". Journal of Theoretical Biology. 249 (2): 331–342. arXiv:1007.4122. Bibcode:2007JThBi.249..331T. doi:10.1016/j.jtbi.2007.07.029. PMID 17826800. S2CID 12206140.
Tlusty T (February 2008). "Rate-distortion scenario for the emergence and evolution of noisy molecular codes". Physical Review Letters. 100 (4) 048101. arXiv:1007.4149. Bibcode:2008PhRvL.100d8101T. doi:10.1103/PhysRevLett.100.048101. PMID 18352335. S2CID 12246664.
Sella G, Ardell DH (September 2006). "The coevolution of genes and genetic codes: Crick's frozen accident revisited". Journal of Molecular Evolution. 63 (3): 297–313. Bibcode:2006JMolE..63..297S. doi:10.1007/s00239-004-0176-7. PMID 16838217. S2CID 1260806.
Tlusty T (September 2010). "A colorful origin for the genetic code: information theory, statistical mechanics and the emergence of molecular codes". Physics of Life Reviews. 7 (3): 362–376. arXiv:1007.3906. Bibcode:2010PhLRv...7..362T. doi:10.1016/j.plrev.2010.06.002. PMID 20558115. S2CID 1845965.

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Fry M (2022). "Crick's Adaptor Hypothesis and the Discovery of Transfer RNA: Experiment Surpassing Theoretical Prediction". Philosophy, Theory, and Practice in Biology. 14. doi:10.3998/ptpbio.2628. ISSN 2475-3025. S2CID 249112573.

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Crick F (1955). "On Degenerate Templates and the Adaptor Hypothesis: A Note for the RNA Tie Club". National Library of Medicine. Archived from the original on 16 August 2022. Retrieved 21 July 2022.
Maloy S (29 November 2003). "How nonsense mutations got their names". Microbial Genetics Course. San Diego State University. Archived from the original on 10 March 2022. Retrieved 10 March 2010.
KR B (2002). "Malaria and the Red Cell". Harvard. Archived from the original on 27 November 2011.

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References for the image are found in Wikimedia Commons page at: Commons:File:Notable mutations.svg#References.

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Crick F (10 July 1990). "Chapter 8: The Genetic Code". What Mad Pursuit: A Personal View of Scientific Discovery. Basic Books. pp. 89–101. ISBN 978-0-465-09138-6. OCLC 1020240407.^{[permanent dead link]}
Hayes B (1998). "Computing Science: The Invention of the Genetic Code". American Scientist. 86 (1): 8–14. doi:10.1511/1998.17.3338. ISSN 0003-0996. JSTOR 27856930. S2CID 121907709.
Fry M (2022). "Crick's Adaptor Hypothesis and the Discovery of Transfer RNA: Experiment Surpassing Theoretical Prediction". Philosophy, Theory, and Practice in Biology. 14. doi:10.3998/ptpbio.2628. ISSN 2475-3025. S2CID 249112573.
Watson JD (2007). Avoid Boring People: Lessons from a Life in Science. Oxford University Press. p. 112. ISBN 978-0-19-280273-6. OCLC 47716375.

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