HIV-1 protease (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "HIV-1 protease" in English language version.

refsWebsite

Global rank English rank

34nih.gov

4^th place

23doi.org

2^nd place

5semanticscholar.org

11^th place

8^th place

4harvard.edu

18^th place

17^th place

1zenodo.org

621^st place

380^th place

1web.archive.org

1^st place

1stanford.edu

179^th place

183^rd place

doi.org

Davies DR (1990). "The structure and function of the aspartic proteinases". Annual Review of Biophysics and Biophysical Chemistry. 19 (1): 189–215. doi:10.1146/annurev.bb.19.060190.001201. PMID 2194475.
Brik A, Wong CH (January 2003). "HIV-1 protease: mechanism and drug discovery". Organic & Biomolecular Chemistry. 1 (1): 5–14. doi:10.1039/b208248a. PMID 12929379.
Huang X, Britto MD, Kear-Scott JL, Boone CD, Rocca JR, Simmerling C, Mckenna R, Bieri M, Gooley PR, Dunn BM, Fanucci GE (June 2014). "The role of select subtype polymorphisms on HIV-1 protease conformational sampling and dynamics". The Journal of Biological Chemistry. 289 (24): 17203–14. doi:10.1074/jbc.M114.571836. PMC 4059161. PMID 24742668.
Lv Z, Chu Y, Wang Y (April 2015). "HIV protease inhibitors: a review of molecular selectivity and toxicity". HIV/AIDS: Research and Palliative Care. 7: 95–104. doi:10.2147/hiv.s79956. PMC 4396582. PMID 25897264.
Kräusslich HG, Ingraham RH, Skoog MT, Wimmer E, Pallai PV, Carter CA (February 1989). "Activity of purified biosynthetic proteinase of human immunodeficiency virus on natural substrates and synthetic peptides". Proceedings of the National Academy of Sciences of the United States of America. 86 (3): 807–11. Bibcode:1989PNAS...86..807K. doi:10.1073/pnas.86.3.807. PMC 286566. PMID 2644644.
Kohl NE, Emini EA, Schleif WA, Davis LJ, Heimbach JC, Dixon RA, Scolnick EM, Sigal IS (July 1988). "Active human immunodeficiency virus protease is required for viral infectivity". Proceedings of the National Academy of Sciences of the United States of America. 85 (13): 4686–90. Bibcode:1988PNAS...85.4686K. doi:10.1073/pnas.85.13.4686. PMC 280500. PMID 3290901.
Perryman AL, Lin JH, McCammon JA (April 2004). "HIV-1 protease molecular dynamics of a wild-type and of the V82F/I84V mutant: possible contributions to drug resistance and a potential new target site for drugs" (PDF). Protein Science. 13 (4): 1108–23. doi:10.1110/ps.03468904. PMC 2280056. PMID 15044738. Archived from the original (PDF) on 2008-12-16.
Chatterjee A, Mridula P, Mishra RK, Mittal R, Hosur RV (March 2005). "Folding regulates autoprocessing of HIV-1 protease precursor". The Journal of Biological Chemistry. 280 (12): 11369–78. doi:10.1074/jbc.M412603200. PMID 15632156.
Pettit SC, Everitt LE, Choudhury S, Dunn BM, Kaplan AH (August 2004). "Initial cleavage of the human immunodeficiency virus type 1 GagPol precursor by its activated protease occurs by an intramolecular mechanism". Journal of Virology. 78 (16): 8477–85. doi:10.1128/JVI.78.16.8477-8485.2004. PMC 479095. PMID 15280456.
Miller M, Schneider J, Sathyanarayana BK, Toth MV, Marshall GR, Clawson L, Selk L, Kent SB, Wlodawer A (December 1989). "Structure of complex of synthetic HIV-1 protease with a substrate-based inhibitor at 2.3 A resolution". Science. 246 (4934): 1149–52. doi:10.1126/science.2686029. PMID 2686029.
Louis JM, Clore GM, Gronenborn AM (September 1999). "Autoprocessing of HIV-1 protease is tightly coupled to protein folding". Nature Structural Biology. 6 (9): 868–75. doi:10.1038/12327. PMID 10467100. S2CID 6375519.
Louis JM, Nashed NT, Parris KD, Kimmel AR, Jerina DM (August 1994). "Kinetics and mechanism of autoprocessing of human immunodeficiency virus type 1 protease from an analog of the Gag-Pol polyprotein". Proceedings of the National Academy of Sciences of the United States of America. 91 (17): 7970–4. Bibcode:1994PNAS...91.7970L. doi:10.1073/pnas.91.17.7970. PMC 44526. PMID 8058744.
Wondrak EM, Nashed NT, Haber MT, Jerina DM, Louis JM (February 1996). "A transient precursor of the HIV-1 protease. Isolation, characterization, and kinetics of maturation". The Journal of Biological Chemistry. 271 (8): 4477–81. doi:10.1074/jbc.271.8.4477. PMID 8626801.
Zhang S, Kaplan AH, Tropsha A (November 2008). "HIV-1 protease function and structure studies with the simplicial neighborhood analysis of protein packing method". Proteins. 73 (3): 742–53. doi:10.1002/prot.22094. PMC 2765824. PMID 18498108.
Huang L, Chen C (July 2013). "Understanding HIV-1 protease autoprocessing for novel therapeutic development". Future Medicinal Chemistry. 5 (11): 1215–29. doi:10.4155/fmc.13.89. PMC 3826259. PMID 23859204.
Smith R, Brereton IM, Chai RY, Kent SB (November 1996). "Ionization states of the catalytic residues in HIV-1 protease". Nature Structural Biology. 3 (11): 946–50. doi:10.1038/nsb1196-946. PMID 8901873. S2CID 1076528.
Liu H, Müller-Plathe F, van Gunsteren WF (August 1996). "A combined quantum/classical molecular dynamics study of the catalytic mechanism of HIV protease". Journal of Molecular Biology. 261 (3): 454–69. doi:10.1006/jmbi.1996.0476. PMID 8780786.
Jaskólski M, Tomasselli AG, Sawyer TK, Staples DG, Heinrikson RL, Schneider J, Kent SB, Wlodawer A (February 1991). "Structure at 2.5-A resolution of chemically synthesized human immunodeficiency virus type 1 protease complexed with a hydroxyethylene-based inhibitor". Biochemistry. 30 (6): 1600–9. doi:10.1021/bi00220a023. PMID 1993177.
Griffin L, Annaert P, Brouwer KL (September 2011). "Influence of drug transport proteins on the pharmacokinetics and drug interactions of HIV protease inhibitors". Journal of Pharmaceutical Sciences. 100 (9): 3636–54. doi:10.1002/jps.22655. PMC 3750718. PMID 21698598.
Watkins T, Resch W, Irlbeck D, Swanstrom R (February 2003). "Selection of high-level resistance to human immunodeficiency virus type 1 protease inhibitors". Antimicrobial Agents and Chemotherapy. 47 (2): 759–69. doi:10.1128/AAC.47.2.759-769.2003. PMC 151730. PMID 12543689.
Loeb DD, Swanstrom R, Everitt L, Manchester M, Stamper SE, Hutchison CA (August 1989). "Complete mutagenesis of the HIV-1 protease". Nature. 340 (6232): 397–400. Bibcode:1989Natur.340..397L. doi:10.1038/340397a0. PMID 2666861. S2CID 4351388.
Moore JP, Stevenson M (October 2000). "New targets for inhibitors of HIV-1 replication". Nature Reviews. Molecular Cell Biology. 1 (1): 40–9. doi:10.1038/35036060. PMID 11413488. S2CID 10811618.
De Clercq E (December 2007). "The design of drugs for HIV and HCV". Nature Reviews. Drug Discovery. 6 (12): 1001–18. doi:10.1038/nrd2424. PMID 18049474. S2CID 37859193.

harvard.edu

ui.adsabs.harvard.edu

Kräusslich HG, Ingraham RH, Skoog MT, Wimmer E, Pallai PV, Carter CA (February 1989). "Activity of purified biosynthetic proteinase of human immunodeficiency virus on natural substrates and synthetic peptides". Proceedings of the National Academy of Sciences of the United States of America. 86 (3): 807–11. Bibcode:1989PNAS...86..807K. doi:10.1073/pnas.86.3.807. PMC 286566. PMID 2644644.
Kohl NE, Emini EA, Schleif WA, Davis LJ, Heimbach JC, Dixon RA, Scolnick EM, Sigal IS (July 1988). "Active human immunodeficiency virus protease is required for viral infectivity". Proceedings of the National Academy of Sciences of the United States of America. 85 (13): 4686–90. Bibcode:1988PNAS...85.4686K. doi:10.1073/pnas.85.13.4686. PMC 280500. PMID 3290901.
Louis JM, Nashed NT, Parris KD, Kimmel AR, Jerina DM (August 1994). "Kinetics and mechanism of autoprocessing of human immunodeficiency virus type 1 protease from an analog of the Gag-Pol polyprotein". Proceedings of the National Academy of Sciences of the United States of America. 91 (17): 7970–4. Bibcode:1994PNAS...91.7970L. doi:10.1073/pnas.91.17.7970. PMC 44526. PMID 8058744.
Loeb DD, Swanstrom R, Everitt L, Manchester M, Stamper SE, Hutchison CA (August 1989). "Complete mutagenesis of the HIV-1 protease". Nature. 340 (6232): 397–400. Bibcode:1989Natur.340..397L. doi:10.1038/340397a0. PMID 2666861. S2CID 4351388.

nih.gov

pubmed.ncbi.nlm.nih.gov

Davies DR (1990). "The structure and function of the aspartic proteinases". Annual Review of Biophysics and Biophysical Chemistry. 19 (1): 189–215. doi:10.1146/annurev.bb.19.060190.001201. PMID 2194475.
Brik A, Wong CH (January 2003). "HIV-1 protease: mechanism and drug discovery". Organic & Biomolecular Chemistry. 1 (1): 5–14. doi:10.1039/b208248a. PMID 12929379.
Huang X, Britto MD, Kear-Scott JL, Boone CD, Rocca JR, Simmerling C, Mckenna R, Bieri M, Gooley PR, Dunn BM, Fanucci GE (June 2014). "The role of select subtype polymorphisms on HIV-1 protease conformational sampling and dynamics". The Journal of Biological Chemistry. 289 (24): 17203–14. doi:10.1074/jbc.M114.571836. PMC 4059161. PMID 24742668.
Lv Z, Chu Y, Wang Y (April 2015). "HIV protease inhibitors: a review of molecular selectivity and toxicity". HIV/AIDS: Research and Palliative Care. 7: 95–104. doi:10.2147/hiv.s79956. PMC 4396582. PMID 25897264.
Kräusslich HG, Ingraham RH, Skoog MT, Wimmer E, Pallai PV, Carter CA (February 1989). "Activity of purified biosynthetic proteinase of human immunodeficiency virus on natural substrates and synthetic peptides". Proceedings of the National Academy of Sciences of the United States of America. 86 (3): 807–11. Bibcode:1989PNAS...86..807K. doi:10.1073/pnas.86.3.807. PMC 286566. PMID 2644644.
Kohl NE, Emini EA, Schleif WA, Davis LJ, Heimbach JC, Dixon RA, Scolnick EM, Sigal IS (July 1988). "Active human immunodeficiency virus protease is required for viral infectivity". Proceedings of the National Academy of Sciences of the United States of America. 85 (13): 4686–90. Bibcode:1988PNAS...85.4686K. doi:10.1073/pnas.85.13.4686. PMC 280500. PMID 3290901.
Perryman AL, Lin JH, McCammon JA (April 2004). "HIV-1 protease molecular dynamics of a wild-type and of the V82F/I84V mutant: possible contributions to drug resistance and a potential new target site for drugs" (PDF). Protein Science. 13 (4): 1108–23. doi:10.1110/ps.03468904. PMC 2280056. PMID 15044738. Archived from the original (PDF) on 2008-12-16.
Chatterjee A, Mridula P, Mishra RK, Mittal R, Hosur RV (March 2005). "Folding regulates autoprocessing of HIV-1 protease precursor". The Journal of Biological Chemistry. 280 (12): 11369–78. doi:10.1074/jbc.M412603200. PMID 15632156.
Pettit SC, Everitt LE, Choudhury S, Dunn BM, Kaplan AH (August 2004). "Initial cleavage of the human immunodeficiency virus type 1 GagPol precursor by its activated protease occurs by an intramolecular mechanism". Journal of Virology. 78 (16): 8477–85. doi:10.1128/JVI.78.16.8477-8485.2004. PMC 479095. PMID 15280456.
Miller M, Schneider J, Sathyanarayana BK, Toth MV, Marshall GR, Clawson L, Selk L, Kent SB, Wlodawer A (December 1989). "Structure of complex of synthetic HIV-1 protease with a substrate-based inhibitor at 2.3 A resolution". Science. 246 (4934): 1149–52. doi:10.1126/science.2686029. PMID 2686029.
Louis JM, Clore GM, Gronenborn AM (September 1999). "Autoprocessing of HIV-1 protease is tightly coupled to protein folding". Nature Structural Biology. 6 (9): 868–75. doi:10.1038/12327. PMID 10467100. S2CID 6375519.
Louis JM, Nashed NT, Parris KD, Kimmel AR, Jerina DM (August 1994). "Kinetics and mechanism of autoprocessing of human immunodeficiency virus type 1 protease from an analog of the Gag-Pol polyprotein". Proceedings of the National Academy of Sciences of the United States of America. 91 (17): 7970–4. Bibcode:1994PNAS...91.7970L. doi:10.1073/pnas.91.17.7970. PMC 44526. PMID 8058744.
Wondrak EM, Nashed NT, Haber MT, Jerina DM, Louis JM (February 1996). "A transient precursor of the HIV-1 protease. Isolation, characterization, and kinetics of maturation". The Journal of Biological Chemistry. 271 (8): 4477–81. doi:10.1074/jbc.271.8.4477. PMID 8626801.
Zhang S, Kaplan AH, Tropsha A (November 2008). "HIV-1 protease function and structure studies with the simplicial neighborhood analysis of protein packing method". Proteins. 73 (3): 742–53. doi:10.1002/prot.22094. PMC 2765824. PMID 18498108.
Huang L, Chen C (July 2013). "Understanding HIV-1 protease autoprocessing for novel therapeutic development". Future Medicinal Chemistry. 5 (11): 1215–29. doi:10.4155/fmc.13.89. PMC 3826259. PMID 23859204.
Smith R, Brereton IM, Chai RY, Kent SB (November 1996). "Ionization states of the catalytic residues in HIV-1 protease". Nature Structural Biology. 3 (11): 946–50. doi:10.1038/nsb1196-946. PMID 8901873. S2CID 1076528.
Liu H, Müller-Plathe F, van Gunsteren WF (August 1996). "A combined quantum/classical molecular dynamics study of the catalytic mechanism of HIV protease". Journal of Molecular Biology. 261 (3): 454–69. doi:10.1006/jmbi.1996.0476. PMID 8780786.
Jaskólski M, Tomasselli AG, Sawyer TK, Staples DG, Heinrikson RL, Schneider J, Kent SB, Wlodawer A (February 1991). "Structure at 2.5-A resolution of chemically synthesized human immunodeficiency virus type 1 protease complexed with a hydroxyethylene-based inhibitor". Biochemistry. 30 (6): 1600–9. doi:10.1021/bi00220a023. PMID 1993177.
Griffin L, Annaert P, Brouwer KL (September 2011). "Influence of drug transport proteins on the pharmacokinetics and drug interactions of HIV protease inhibitors". Journal of Pharmaceutical Sciences. 100 (9): 3636–54. doi:10.1002/jps.22655. PMC 3750718. PMID 21698598.
Watkins T, Resch W, Irlbeck D, Swanstrom R (February 2003). "Selection of high-level resistance to human immunodeficiency virus type 1 protease inhibitors". Antimicrobial Agents and Chemotherapy. 47 (2): 759–69. doi:10.1128/AAC.47.2.759-769.2003. PMC 151730. PMID 12543689.
Loeb DD, Swanstrom R, Everitt L, Manchester M, Stamper SE, Hutchison CA (August 1989). "Complete mutagenesis of the HIV-1 protease". Nature. 340 (6232): 397–400. Bibcode:1989Natur.340..397L. doi:10.1038/340397a0. PMID 2666861. S2CID 4351388.
Moore JP, Stevenson M (October 2000). "New targets for inhibitors of HIV-1 replication". Nature Reviews. Molecular Cell Biology. 1 (1): 40–9. doi:10.1038/35036060. PMID 11413488. S2CID 10811618.
De Clercq E (December 2007). "The design of drugs for HIV and HCV". Nature Reviews. Drug Discovery. 6 (12): 1001–18. doi:10.1038/nrd2424. PMID 18049474. S2CID 37859193.

ncbi.nlm.nih.gov

Huang X, Britto MD, Kear-Scott JL, Boone CD, Rocca JR, Simmerling C, Mckenna R, Bieri M, Gooley PR, Dunn BM, Fanucci GE (June 2014). "The role of select subtype polymorphisms on HIV-1 protease conformational sampling and dynamics". The Journal of Biological Chemistry. 289 (24): 17203–14. doi:10.1074/jbc.M114.571836. PMC 4059161. PMID 24742668.
Lv Z, Chu Y, Wang Y (April 2015). "HIV protease inhibitors: a review of molecular selectivity and toxicity". HIV/AIDS: Research and Palliative Care. 7: 95–104. doi:10.2147/hiv.s79956. PMC 4396582. PMID 25897264.
Kräusslich HG, Ingraham RH, Skoog MT, Wimmer E, Pallai PV, Carter CA (February 1989). "Activity of purified biosynthetic proteinase of human immunodeficiency virus on natural substrates and synthetic peptides". Proceedings of the National Academy of Sciences of the United States of America. 86 (3): 807–11. Bibcode:1989PNAS...86..807K. doi:10.1073/pnas.86.3.807. PMC 286566. PMID 2644644.
Kohl NE, Emini EA, Schleif WA, Davis LJ, Heimbach JC, Dixon RA, Scolnick EM, Sigal IS (July 1988). "Active human immunodeficiency virus protease is required for viral infectivity". Proceedings of the National Academy of Sciences of the United States of America. 85 (13): 4686–90. Bibcode:1988PNAS...85.4686K. doi:10.1073/pnas.85.13.4686. PMC 280500. PMID 3290901.
Perryman AL, Lin JH, McCammon JA (April 2004). "HIV-1 protease molecular dynamics of a wild-type and of the V82F/I84V mutant: possible contributions to drug resistance and a potential new target site for drugs" (PDF). Protein Science. 13 (4): 1108–23. doi:10.1110/ps.03468904. PMC 2280056. PMID 15044738. Archived from the original (PDF) on 2008-12-16.
Pettit SC, Everitt LE, Choudhury S, Dunn BM, Kaplan AH (August 2004). "Initial cleavage of the human immunodeficiency virus type 1 GagPol precursor by its activated protease occurs by an intramolecular mechanism". Journal of Virology. 78 (16): 8477–85. doi:10.1128/JVI.78.16.8477-8485.2004. PMC 479095. PMID 15280456.
Louis JM, Nashed NT, Parris KD, Kimmel AR, Jerina DM (August 1994). "Kinetics and mechanism of autoprocessing of human immunodeficiency virus type 1 protease from an analog of the Gag-Pol polyprotein". Proceedings of the National Academy of Sciences of the United States of America. 91 (17): 7970–4. Bibcode:1994PNAS...91.7970L. doi:10.1073/pnas.91.17.7970. PMC 44526. PMID 8058744.
Zhang S, Kaplan AH, Tropsha A (November 2008). "HIV-1 protease function and structure studies with the simplicial neighborhood analysis of protein packing method". Proteins. 73 (3): 742–53. doi:10.1002/prot.22094. PMC 2765824. PMID 18498108.
Huang L, Chen C (July 2013). "Understanding HIV-1 protease autoprocessing for novel therapeutic development". Future Medicinal Chemistry. 5 (11): 1215–29. doi:10.4155/fmc.13.89. PMC 3826259. PMID 23859204.
Griffin L, Annaert P, Brouwer KL (September 2011). "Influence of drug transport proteins on the pharmacokinetics and drug interactions of HIV protease inhibitors". Journal of Pharmaceutical Sciences. 100 (9): 3636–54. doi:10.1002/jps.22655. PMC 3750718. PMID 21698598.
Watkins T, Resch W, Irlbeck D, Swanstrom R (February 2003). "Selection of high-level resistance to human immunodeficiency virus type 1 protease inhibitors". Antimicrobial Agents and Chemotherapy. 47 (2): 759–69. doi:10.1128/AAC.47.2.759-769.2003. PMC 151730. PMID 12543689.

semanticscholar.org

api.semanticscholar.org

Louis JM, Clore GM, Gronenborn AM (September 1999). "Autoprocessing of HIV-1 protease is tightly coupled to protein folding". Nature Structural Biology. 6 (9): 868–75. doi:10.1038/12327. PMID 10467100. S2CID 6375519.
Smith R, Brereton IM, Chai RY, Kent SB (November 1996). "Ionization states of the catalytic residues in HIV-1 protease". Nature Structural Biology. 3 (11): 946–50. doi:10.1038/nsb1196-946. PMID 8901873. S2CID 1076528.
Loeb DD, Swanstrom R, Everitt L, Manchester M, Stamper SE, Hutchison CA (August 1989). "Complete mutagenesis of the HIV-1 protease". Nature. 340 (6232): 397–400. Bibcode:1989Natur.340..397L. doi:10.1038/340397a0. PMID 2666861. S2CID 4351388.
Moore JP, Stevenson M (October 2000). "New targets for inhibitors of HIV-1 replication". Nature Reviews. Molecular Cell Biology. 1 (1): 40–9. doi:10.1038/35036060. PMID 11413488. S2CID 10811618.
De Clercq E (December 2007). "The design of drugs for HIV and HCV". Nature Reviews. Drug Discovery. 6 (12): 1001–18. doi:10.1038/nrd2424. PMID 18049474. S2CID 37859193.

stanford.edu

ai.stanford.edu

Perryman AL, Lin JH, McCammon JA (April 2004). "HIV-1 protease molecular dynamics of a wild-type and of the V82F/I84V mutant: possible contributions to drug resistance and a potential new target site for drugs" (PDF). Protein Science. 13 (4): 1108–23. doi:10.1110/ps.03468904. PMC 2280056. PMID 15044738. Archived from the original (PDF) on 2008-12-16.

web.archive.org

Perryman AL, Lin JH, McCammon JA (April 2004). "HIV-1 protease molecular dynamics of a wild-type and of the V82F/I84V mutant: possible contributions to drug resistance and a potential new target site for drugs" (PDF). Protein Science. 13 (4): 1108–23. doi:10.1110/ps.03468904. PMC 2280056. PMID 15044738. Archived from the original (PDF) on 2008-12-16.

zenodo.org

Davies DR (1990). "The structure and function of the aspartic proteinases". Annual Review of Biophysics and Biophysical Chemistry. 19 (1): 189–215. doi:10.1146/annurev.bb.19.060190.001201. PMID 2194475.