Hairpin ribozyme (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Hairpin ribozyme" in English language version.

refsWebsite

Global rank English rank

32nih.gov

4^th place

23doi.org

2^nd place

4semanticscholar.org

11^th place

8^th place

4harvard.edu

18^th place

17^th place

3worldcat.org

5^th place

1escholarship.org

1,523^rd place

976^th place

1csic.es

2,323^rd place

3,364^th place

csic.es

digital.csic.es

Esteban, J. A.; Walter, N. G.; Kotzorek, G.; Heckman, J. E.; Burke, J. M. (1998). "Structural basis for heterogeneous kinetics: Reengineering the hairpin ribozyme" (PDF). Proceedings of the National Academy of Sciences of the United States of America. 95 (11): 6091–6096. Bibcode:1998PNAS...95.6091E. doi:10.1073/pnas.95.11.6091. PMC 27590. PMID 9600922.

doi.org

Symons, RH (1997). "Plant pathogenic RNAs and RNA catalysis". Nucleic Acids Res. 25 (14): 2683–2689. doi:10.1093/nar/25.14.2683. PMC 146833. PMID 9207012.
Alam, S.; Grum-Tokars, V.; Krucinska, J.; Kundracik, M.; Wedekind, J. (2005). "Conformational heterogeneity at position U37 of an all-RNA hairpin ribozyme with implications for metal binding and the catalytic structure of the S-turn". Biochemistry. 44 (44): 14396–14408. doi:10.1021/bi051550i. PMID 16262240.
Feldstein, PA; Buzayan, JM; Bruening, G (October 15, 1989). "Two sequences participating in the autolytic processing of satellite tobacco ringspot virus complementary RNA". Gene. 82 (1): 53–61. doi:10.1016/0378-1119(89)90029-2. PMID 2583519.
Hampel, A; Tritz, R (June 13, 1989). "RNA catalytic properties of the minimum (-)sTRSV sequence". Biochemistry. 28 (12): 4929–4933. doi:10.1021/bi00438a002. PMID 2765519.
Rubino, L; Tousignant, ME; Steger, G; Kaper, JM (September 1990). "Nucleotide sequence and structural analysis of two satellite RNAs associated with chicory yellow mottle virus". The Journal of General Virology. 71 (9): 1897–1903. doi:10.1099/0022-1317-71-9-1897. PMID 1698918.
Kaper, JM; Tousignant, ME; Steger, G (July 15, 1988). "Nucleotide sequence predicts circularity and self-cleavage of 300-ribonucleotide satellite of arabis mosaic virus". Biochemical and Biophysical Research Communications. 154 (1): 318–325. doi:10.1016/0006-291x(88)90687-0. PMID 3395334.
Weinberg CE, Olzog VJ, Eckert I, Weinberg Z (June 2021). "Identification of over 200-fold more hairpin ribozymes than previously known in diverse circular RNAs". Nucleic Acids Res. 49 (11): 6375–6388. doi:10.1093/nar/gkab454. PMC 8216279. PMID 34096583.
Feldstein, PA; Bruening, G (1993). "Catalytically active geometry in the reversible circularization of 'mini-monomer' RNAs derived from the complementary strand of tobacco ringspot virus satellite RNA". Nucleic Acids Research. 21 (8): 1991–1998. doi:10.1093/nar/21.8.1991. PMC 309442. PMID 7684131.
Hampel, A; Tritz, R (1989). "RNA catalytic properties of the minimum (-)sTRSV sequence". Biochemistry. 28 (12): 4929–4933. doi:10.1021/bi00438a002. PMID 2765519.
Murray, J. B.; Seyhan, A. A.; Walter, N. G.; Burke, J. M.; Scott, W. G. (1998). "The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone" (PDF). Chemistry & Biology. 5 (10): 587–595. doi:10.1016/S1074-5521(98)90116-8. PMID 9818150. S2CID 17025877.
Young, K. J.; Gill, F.; Grasby, J. A. (October 1, 1997). "Metal Ions Play a Passive Role in the Hairpin Ribozyme Catalysed Reaction". Nucleic Acids Research. 25 (19): 3760–3766. doi:10.1093/nar/25.19.3760. ISSN 0305-1048. PMC 146958. PMID 9380495.
Rupert, P. B.; Ferré-D'Amaré, A. R. (April 12, 2001). "Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis". Nature. 410 (6830): 780–786. Bibcode:2001Natur.410..780R. doi:10.1038/35071009. ISSN 0028-0836. PMID 11298439. S2CID 4416839.
Rupert, Peter B.; Massey, Archna P.; Sigurdsson, Snorri Th; Ferré-D'Amaré, Adrian R. (November 15, 2002). "Transition state stabilization by a catalytic RNA". Science. 298 (5597): 1421–1424. Bibcode:2002Sci...298.1421R. doi:10.1126/science.1076093. ISSN 1095-9203. PMID 12376595. S2CID 23783258.
Salter, J.; Krucinska, J.; Alam, S.; Grum-Tokars, V.; Wedekind, J. E. (2006). "Water in the active site of an all-RNA hairpin ribozyme and the effects of Gua8 base variants on the geometry of phosphoryl transfer". Biochemistry. 45 (3): 686–700. doi:10.1021/bi051887k. PMC 2546605. PMID 16411744.
Butcher, S. E.; Heckman, J. E.; Burke, J. M. (1995). "Reconstitution of hairpin ribozyme activity following separation of functional domains". The Journal of Biological Chemistry. 270 (50): 29648–29651. doi:10.1074/jbc.270.50.29648. PMID 8530348.
Esteban, J. A.; Walter, N. G.; Kotzorek, G.; Heckman, J. E.; Burke, J. M. (1998). "Structural basis for heterogeneous kinetics: Reengineering the hairpin ribozyme" (PDF). Proceedings of the National Academy of Sciences of the United States of America. 95 (11): 6091–6096. Bibcode:1998PNAS...95.6091E. doi:10.1073/pnas.95.11.6091. PMC 27590. PMID 9600922.
Nahas, M.; Wilson, T. J.; Ha, T.; Lilley, D. M. J. (2005). "Folding and catalysis of the hairpin ribozyme". Biochemical Society Transactions. 33 (Pt 3): 461–465. doi:10.1042/BST0330461. PMID 15916541.
Cochrane, J. C.; Strobel, S. A. (2008). "Catalytic Strategies of Self-Cleaving Ribozymes". Accounts of Chemical Research. 41 (8): 1027–1035. doi:10.1021/ar800050c. PMID 18652494.
Chowrira, BM; Burke, JM (1991). "Binding and cleavage of nucleic acids by the "hairpin" ribozyme". Biochemistry. 30 (35): 8518–8522. doi:10.1021/bi00099a003. PMID 1909564.
Yu, M; Ojwang, J; Yamada, O; Hampel, A; Rapapport, J; Looney, D; Wong-Staal, F (1993). "A hairpin ribozyme inhibits expression of diverse strains of human immunodeficiency virus type 1". Proceedings of the National Academy of Sciences of the United States of America. 90 (13): 6340–6344. Bibcode:1993PNAS...90.6340Y. doi:10.1073/pnas.90.13.6340. PMC 46924. PMID 8327516.
Puerta-Fernández E, Barroso-del Jesus A, Romero-López C, Tapia N, Martínez MA, Berzal-Herranz A (June 10, 2005). "Inhibition of HIV-1 replication by RNA targeted against the LTR region". AIDS. 19 (9): 863–870. doi:10.1097/01.aids.0000171399.77500.e0. PMID 15905666. S2CID 16652577.
Zu Putlitz, J.; Yu, Q.; Burke, J. M.; Wands, J. R. (1999). "Combinatorial Screening and Intracellular Antiviral Activity of Hairpin Ribozymes Directed against Hepatitis B Virus". Journal of Virology. 73 (7): 5381–5387. doi:10.1128/JVI.73.7.5381-5387.1999. PMC 112594. PMID 10364285.
Zhang, Z.; Burke, J. (2005). "Inhibition of viral replication by ribozyme: mutational analysis of the site and mechanism of antiviral activity". Journal of Virology. 79 (6): 3728–3736. doi:10.1128/JVI.79.6.3728-3736.2005. PMC 1075678. PMID 15731266.

escholarship.org

Murray, J. B.; Seyhan, A. A.; Walter, N. G.; Burke, J. M.; Scott, W. G. (1998). "The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone" (PDF). Chemistry & Biology. 5 (10): 587–595. doi:10.1016/S1074-5521(98)90116-8. PMID 9818150. S2CID 17025877.

harvard.edu

ui.adsabs.harvard.edu

Rupert, P. B.; Ferré-D'Amaré, A. R. (April 12, 2001). "Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis". Nature. 410 (6830): 780–786. Bibcode:2001Natur.410..780R. doi:10.1038/35071009. ISSN 0028-0836. PMID 11298439. S2CID 4416839.
Rupert, Peter B.; Massey, Archna P.; Sigurdsson, Snorri Th; Ferré-D'Amaré, Adrian R. (November 15, 2002). "Transition state stabilization by a catalytic RNA". Science. 298 (5597): 1421–1424. Bibcode:2002Sci...298.1421R. doi:10.1126/science.1076093. ISSN 1095-9203. PMID 12376595. S2CID 23783258.
Esteban, J. A.; Walter, N. G.; Kotzorek, G.; Heckman, J. E.; Burke, J. M. (1998). "Structural basis for heterogeneous kinetics: Reengineering the hairpin ribozyme" (PDF). Proceedings of the National Academy of Sciences of the United States of America. 95 (11): 6091–6096. Bibcode:1998PNAS...95.6091E. doi:10.1073/pnas.95.11.6091. PMC 27590. PMID 9600922.
Yu, M; Ojwang, J; Yamada, O; Hampel, A; Rapapport, J; Looney, D; Wong-Staal, F (1993). "A hairpin ribozyme inhibits expression of diverse strains of human immunodeficiency virus type 1". Proceedings of the National Academy of Sciences of the United States of America. 90 (13): 6340–6344. Bibcode:1993PNAS...90.6340Y. doi:10.1073/pnas.90.13.6340. PMC 46924. PMID 8327516.

nih.gov

pubmed.ncbi.nlm.nih.gov

Symons, RH (1997). "Plant pathogenic RNAs and RNA catalysis". Nucleic Acids Res. 25 (14): 2683–2689. doi:10.1093/nar/25.14.2683. PMC 146833. PMID 9207012.
Alam, S.; Grum-Tokars, V.; Krucinska, J.; Kundracik, M.; Wedekind, J. (2005). "Conformational heterogeneity at position U37 of an all-RNA hairpin ribozyme with implications for metal binding and the catalytic structure of the S-turn". Biochemistry. 44 (44): 14396–14408. doi:10.1021/bi051550i. PMID 16262240.
Feldstein, PA; Buzayan, JM; Bruening, G (October 15, 1989). "Two sequences participating in the autolytic processing of satellite tobacco ringspot virus complementary RNA". Gene. 82 (1): 53–61. doi:10.1016/0378-1119(89)90029-2. PMID 2583519.
Hampel, A; Tritz, R (June 13, 1989). "RNA catalytic properties of the minimum (-)sTRSV sequence". Biochemistry. 28 (12): 4929–4933. doi:10.1021/bi00438a002. PMID 2765519.
Rubino, L; Tousignant, ME; Steger, G; Kaper, JM (September 1990). "Nucleotide sequence and structural analysis of two satellite RNAs associated with chicory yellow mottle virus". The Journal of General Virology. 71 (9): 1897–1903. doi:10.1099/0022-1317-71-9-1897. PMID 1698918.
Kaper, JM; Tousignant, ME; Steger, G (July 15, 1988). "Nucleotide sequence predicts circularity and self-cleavage of 300-ribonucleotide satellite of arabis mosaic virus". Biochemical and Biophysical Research Communications. 154 (1): 318–325. doi:10.1016/0006-291x(88)90687-0. PMID 3395334.
Weinberg CE, Olzog VJ, Eckert I, Weinberg Z (June 2021). "Identification of over 200-fold more hairpin ribozymes than previously known in diverse circular RNAs". Nucleic Acids Res. 49 (11): 6375–6388. doi:10.1093/nar/gkab454. PMC 8216279. PMID 34096583.
Feldstein, PA; Bruening, G (1993). "Catalytically active geometry in the reversible circularization of 'mini-monomer' RNAs derived from the complementary strand of tobacco ringspot virus satellite RNA". Nucleic Acids Research. 21 (8): 1991–1998. doi:10.1093/nar/21.8.1991. PMC 309442. PMID 7684131.
Hampel, A; Tritz, R (1989). "RNA catalytic properties of the minimum (-)sTRSV sequence". Biochemistry. 28 (12): 4929–4933. doi:10.1021/bi00438a002. PMID 2765519.
Murray, J. B.; Seyhan, A. A.; Walter, N. G.; Burke, J. M.; Scott, W. G. (1998). "The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone" (PDF). Chemistry & Biology. 5 (10): 587–595. doi:10.1016/S1074-5521(98)90116-8. PMID 9818150. S2CID 17025877.
Young, K. J.; Gill, F.; Grasby, J. A. (October 1, 1997). "Metal Ions Play a Passive Role in the Hairpin Ribozyme Catalysed Reaction". Nucleic Acids Research. 25 (19): 3760–3766. doi:10.1093/nar/25.19.3760. ISSN 0305-1048. PMC 146958. PMID 9380495.
Rupert, P. B.; Ferré-D'Amaré, A. R. (April 12, 2001). "Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis". Nature. 410 (6830): 780–786. Bibcode:2001Natur.410..780R. doi:10.1038/35071009. ISSN 0028-0836. PMID 11298439. S2CID 4416839.
Rupert, Peter B.; Massey, Archna P.; Sigurdsson, Snorri Th; Ferré-D'Amaré, Adrian R. (November 15, 2002). "Transition state stabilization by a catalytic RNA". Science. 298 (5597): 1421–1424. Bibcode:2002Sci...298.1421R. doi:10.1126/science.1076093. ISSN 1095-9203. PMID 12376595. S2CID 23783258.
Salter, J.; Krucinska, J.; Alam, S.; Grum-Tokars, V.; Wedekind, J. E. (2006). "Water in the active site of an all-RNA hairpin ribozyme and the effects of Gua8 base variants on the geometry of phosphoryl transfer". Biochemistry. 45 (3): 686–700. doi:10.1021/bi051887k. PMC 2546605. PMID 16411744.
Butcher, S. E.; Heckman, J. E.; Burke, J. M. (1995). "Reconstitution of hairpin ribozyme activity following separation of functional domains". The Journal of Biological Chemistry. 270 (50): 29648–29651. doi:10.1074/jbc.270.50.29648. PMID 8530348.
Esteban, J. A.; Walter, N. G.; Kotzorek, G.; Heckman, J. E.; Burke, J. M. (1998). "Structural basis for heterogeneous kinetics: Reengineering the hairpin ribozyme" (PDF). Proceedings of the National Academy of Sciences of the United States of America. 95 (11): 6091–6096. Bibcode:1998PNAS...95.6091E. doi:10.1073/pnas.95.11.6091. PMC 27590. PMID 9600922.
Nahas, M.; Wilson, T. J.; Ha, T.; Lilley, D. M. J. (2005). "Folding and catalysis of the hairpin ribozyme". Biochemical Society Transactions. 33 (Pt 3): 461–465. doi:10.1042/BST0330461. PMID 15916541.
Cochrane, J. C.; Strobel, S. A. (2008). "Catalytic Strategies of Self-Cleaving Ribozymes". Accounts of Chemical Research. 41 (8): 1027–1035. doi:10.1021/ar800050c. PMID 18652494.
Chowrira, BM; Burke, JM (1991). "Binding and cleavage of nucleic acids by the "hairpin" ribozyme". Biochemistry. 30 (35): 8518–8522. doi:10.1021/bi00099a003. PMID 1909564.
Yu, M; Ojwang, J; Yamada, O; Hampel, A; Rapapport, J; Looney, D; Wong-Staal, F (1993). "A hairpin ribozyme inhibits expression of diverse strains of human immunodeficiency virus type 1". Proceedings of the National Academy of Sciences of the United States of America. 90 (13): 6340–6344. Bibcode:1993PNAS...90.6340Y. doi:10.1073/pnas.90.13.6340. PMC 46924. PMID 8327516.
Puerta-Fernández E, Barroso-del Jesus A, Romero-López C, Tapia N, Martínez MA, Berzal-Herranz A (June 10, 2005). "Inhibition of HIV-1 replication by RNA targeted against the LTR region". AIDS. 19 (9): 863–870. doi:10.1097/01.aids.0000171399.77500.e0. PMID 15905666. S2CID 16652577.
Zu Putlitz, J.; Yu, Q.; Burke, J. M.; Wands, J. R. (1999). "Combinatorial Screening and Intracellular Antiviral Activity of Hairpin Ribozymes Directed against Hepatitis B Virus". Journal of Virology. 73 (7): 5381–5387. doi:10.1128/JVI.73.7.5381-5387.1999. PMC 112594. PMID 10364285.
Zhang, Z.; Burke, J. (2005). "Inhibition of viral replication by ribozyme: mutational analysis of the site and mechanism of antiviral activity". Journal of Virology. 79 (6): 3728–3736. doi:10.1128/JVI.79.6.3728-3736.2005. PMC 1075678. PMID 15731266.

ncbi.nlm.nih.gov

Symons, RH (1997). "Plant pathogenic RNAs and RNA catalysis". Nucleic Acids Res. 25 (14): 2683–2689. doi:10.1093/nar/25.14.2683. PMC 146833. PMID 9207012.
Weinberg CE, Olzog VJ, Eckert I, Weinberg Z (June 2021). "Identification of over 200-fold more hairpin ribozymes than previously known in diverse circular RNAs". Nucleic Acids Res. 49 (11): 6375–6388. doi:10.1093/nar/gkab454. PMC 8216279. PMID 34096583.
Feldstein, PA; Bruening, G (1993). "Catalytically active geometry in the reversible circularization of 'mini-monomer' RNAs derived from the complementary strand of tobacco ringspot virus satellite RNA". Nucleic Acids Research. 21 (8): 1991–1998. doi:10.1093/nar/21.8.1991. PMC 309442. PMID 7684131.
Young, K. J.; Gill, F.; Grasby, J. A. (October 1, 1997). "Metal Ions Play a Passive Role in the Hairpin Ribozyme Catalysed Reaction". Nucleic Acids Research. 25 (19): 3760–3766. doi:10.1093/nar/25.19.3760. ISSN 0305-1048. PMC 146958. PMID 9380495.
Salter, J.; Krucinska, J.; Alam, S.; Grum-Tokars, V.; Wedekind, J. E. (2006). "Water in the active site of an all-RNA hairpin ribozyme and the effects of Gua8 base variants on the geometry of phosphoryl transfer". Biochemistry. 45 (3): 686–700. doi:10.1021/bi051887k. PMC 2546605. PMID 16411744.
Esteban, J. A.; Walter, N. G.; Kotzorek, G.; Heckman, J. E.; Burke, J. M. (1998). "Structural basis for heterogeneous kinetics: Reengineering the hairpin ribozyme" (PDF). Proceedings of the National Academy of Sciences of the United States of America. 95 (11): 6091–6096. Bibcode:1998PNAS...95.6091E. doi:10.1073/pnas.95.11.6091. PMC 27590. PMID 9600922.
Yu, M; Ojwang, J; Yamada, O; Hampel, A; Rapapport, J; Looney, D; Wong-Staal, F (1993). "A hairpin ribozyme inhibits expression of diverse strains of human immunodeficiency virus type 1". Proceedings of the National Academy of Sciences of the United States of America. 90 (13): 6340–6344. Bibcode:1993PNAS...90.6340Y. doi:10.1073/pnas.90.13.6340. PMC 46924. PMID 8327516.
Zu Putlitz, J.; Yu, Q.; Burke, J. M.; Wands, J. R. (1999). "Combinatorial Screening and Intracellular Antiviral Activity of Hairpin Ribozymes Directed against Hepatitis B Virus". Journal of Virology. 73 (7): 5381–5387. doi:10.1128/JVI.73.7.5381-5387.1999. PMC 112594. PMID 10364285.
Zhang, Z.; Burke, J. (2005). "Inhibition of viral replication by ribozyme: mutational analysis of the site and mechanism of antiviral activity". Journal of Virology. 79 (6): 3728–3736. doi:10.1128/JVI.79.6.3728-3736.2005. PMC 1075678. PMID 15731266.

semanticscholar.org

api.semanticscholar.org

Murray, J. B.; Seyhan, A. A.; Walter, N. G.; Burke, J. M.; Scott, W. G. (1998). "The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone" (PDF). Chemistry & Biology. 5 (10): 587–595. doi:10.1016/S1074-5521(98)90116-8. PMID 9818150. S2CID 17025877.
Rupert, P. B.; Ferré-D'Amaré, A. R. (April 12, 2001). "Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis". Nature. 410 (6830): 780–786. Bibcode:2001Natur.410..780R. doi:10.1038/35071009. ISSN 0028-0836. PMID 11298439. S2CID 4416839.
Rupert, Peter B.; Massey, Archna P.; Sigurdsson, Snorri Th; Ferré-D'Amaré, Adrian R. (November 15, 2002). "Transition state stabilization by a catalytic RNA". Science. 298 (5597): 1421–1424. Bibcode:2002Sci...298.1421R. doi:10.1126/science.1076093. ISSN 1095-9203. PMID 12376595. S2CID 23783258.
Puerta-Fernández E, Barroso-del Jesus A, Romero-López C, Tapia N, Martínez MA, Berzal-Herranz A (June 10, 2005). "Inhibition of HIV-1 replication by RNA targeted against the LTR region". AIDS. 19 (9): 863–870. doi:10.1097/01.aids.0000171399.77500.e0. PMID 15905666. S2CID 16652577.

worldcat.org

Young, K. J.; Gill, F.; Grasby, J. A. (October 1, 1997). "Metal Ions Play a Passive Role in the Hairpin Ribozyme Catalysed Reaction". Nucleic Acids Research. 25 (19): 3760–3766. doi:10.1093/nar/25.19.3760. ISSN 0305-1048. PMC 146958. PMID 9380495.
Rupert, P. B.; Ferré-D'Amaré, A. R. (April 12, 2001). "Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis". Nature. 410 (6830): 780–786. Bibcode:2001Natur.410..780R. doi:10.1038/35071009. ISSN 0028-0836. PMID 11298439. S2CID 4416839.
Rupert, Peter B.; Massey, Archna P.; Sigurdsson, Snorri Th; Ferré-D'Amaré, Adrian R. (November 15, 2002). "Transition state stabilization by a catalytic RNA". Science. 298 (5597): 1421–1424. Bibcode:2002Sci...298.1421R. doi:10.1126/science.1076093. ISSN 1095-9203. PMID 12376595. S2CID 23783258.