Homing endonuclease (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Homing endonuclease" in English language version.

refsWebsite

Global rank English rank

36nih.gov

4^th place

28doi.org

2^nd place

9semanticscholar.org

11^th place

8^th place

4harvard.edu

18^th place

17^th place

1washington.edu

1,067^th place

749^th place

doi.org

Edgell DR (February 2009). "Selfish DNA: homing endonucleases find a home". Curr Biol. 19 (3): R115 – R117. Bibcode:2009CBio...19.R115E. doi:10.1016/j.cub.2008.12.019. PMID 19211047. S2CID 2380439.
Jasin M (Jun 1996). "Genetic manipulation of genomonth with rare-cutting endonucleases". Trends Genet. 12 (6): 224–8. doi:10.1016/0168-9525(96)10019-6. PMID 8928227.
Burt A, Koufopanou V (December 2004). "Homing endonuclease genes: the rise and fall and rise again of a selfish element". Curr Opin Genet Dev. 14 (6): 609–15. doi:10.1016/j.gde.2004.09.010. PMID 15531154.
Belfort M, Roberts RJ (September 1995). "Homing endonucleases: keeping the house in order". Nucleic Acids Res. 25 (17): 3379–88. doi:10.1093/nar/25.17.3379. PMC 146926. PMID 9254693.
Chevalier BS, Kortemme T, Chadsey MS, Baker D, Monnat RJ, Stoddard BL (October 2002). "Design, activity, and structure of a highly specific artificial endonuclease". Mol. Cell. 10 (4): 895–905. doi:10.1016/S1097-2765(02)00690-1. PMID 12419232.
Hirata R, Ohsumk Y, Nakano A, Kawasaki H, Suzuki K, Anraku Y (April 1990). "Molecular structure of a gene, VMA1, encoding the catalytic subunit of H(+)-translocating adenosine triphosphatase from vacuolar membranes of Saccharomyces cerevisiae". J Biol Chem. 265 (12): 6726–33. doi:10.1016/S0021-9258(19)39210-5. PMID 2139027.
Kane PM, Yamashiro CT, Wolczyk DF, Neff N, Goebl M, Stevens TH (November 1990). "Protein splicing converts the yeast TFP1 gene product to the 69-kD subunit of the vacuolar H(+)-adenosine triphosphatase". Science. 250 (4981): 651–7. Bibcode:1990Sci...250..651K. doi:10.1126/science.2146742. PMID 2146742.
Perler FB, Comb DG, Jack WE, Moran LS, Qiang B, Kucera RB, Benner J, Slatko BE, Nwankwo DO, Hempstead SK, Carlow CK, Jannasch H (June 1992). "Intervening sequences in an Archaea DNA polymerase gene". PNAS. 89 (12): 5577–81. Bibcode:1992PNAS...89.5577P. doi:10.1073/pnas.89.12.5577. PMC 49335. PMID 1608969.
Jurica MS, Monnat RJ, Stoddard BL (October 1998). "DNA recognition and cleavage by the LAGLIDADG homing endonuclease I-CreI" (PDF). Mol. Cell. 2 (4): 469–76. doi:10.1016/S1097-2765(00)80146-X. PMID 9809068.
Gimble FS, Wang J (October 1996). "Substrate recognition and induced DNA distortion by the PI-SceI endonuclease, an enzyme generated by protein splicing". J Mol Biol. 263 (2): 163–80. doi:10.1006/jmbi.1996.0567. PMID 8913299.
Argast GM, Stephens KM, Emond MJ, Monnat RJ (July 1998). "I-PpoI and I-CreI homing site sequence degeneracy determined by random mutagenesis and sequential in vitro enrichment". J Mol Biol. 280 (3): 345–53. doi:10.1006/jmbi.1998.1886. PMID 9665841.
Shibata T, Nakagawa K, Morishima N (1995). "Multi-site-specific endonucleases and the initiation of homologous genetic recombination in yeast". Adv Biophys. 31: 77–91. doi:10.1016/0065-227X(95)99384-2. PMID 7625280.
Zimmerly S, Guo H, Eskes R, Yang J, Perlman PS, Lambowitz AM (November 1995). "A group II intron RNA is a catalytic component of a DNA endonuclease involved in intron mobility". Cell. 83 (4): 529–38. doi:10.1016/0092-8674(95)90092-6. PMID 7585955. S2CID 10456475.
Roberts RJ, Macelis D (January 1997). "REBASE-restriction enzymes and methylases". Nucleic Acids Res. 25 (1): 248–62. doi:10.1093/nar/25.1.248. PMC 146408. PMID 9016548.
Lambowitz AM, Belfort M (1993). "Introns as mobile genetic elements". Annu Rev Biochem. 62: 587–622. doi:10.1146/annurev.bi.62.070193.003103. PMID 8352597.
Wilson GG (December 1988). "Cloned restriction-modification systems—a review". Gene. 74 (1): 281–9. doi:10.1016/0378-1119(88)90304-6. PMID 3074014.
Heath, P.; et al. (June 1997). "The structure of I-Crel, a group I intron-encoded homing endonuclease". Nature Structural Biology. 4 (6): 468–476. doi:10.1038/nsb0697-468. PMID 9187655. S2CID 12261983.
Duan, X. (May 1997). "Crystal structure of PI-SceI, a homing endonuclease with protein splicing activity". Cell. 89 (4): 555–564. doi:10.1016/S0092-8674(00)80237-8. PMID 9160747. S2CID 14156646.
Van Roey, P.; Fox, KM; et al. (July 2001). "Intertwined structure of the DNA-binding domain of intron endonuclease I-TevI with its substrate". EMBO J. 20 (14): 3631–3637. doi:10.1093/emboj/20.14.3631. PMC 125541. PMID 11447104.
Van Roey, P.; Kowalski, Joseph C.; et al. (July 2002). "Catalytic domain structure and hypothesis for function of GIY-YIG intron endonuclease I-TevI". Nature Structural Biology. 9 (11): 806–811. doi:10.1038/nsb853. PMID 12379841. S2CID 24856337.
Flick, K.; et al. (July 1998). "DNA binding and cleavage by the nuclear intron-encoded homing endonuclease I-PpoI". Nature. 394 (6688): 96–101. Bibcode:1998Natur.394...96F. doi:10.1038/27952. PMID 9665136. S2CID 4427957.
Hafez, M; Hausner, G (August 2012). "Homing endonucleases: DNA scissors on a mission". Genome. 55 (8): 553–69. doi:10.1139/g2012-049. PMID 22891613. S2CID 29183470.
Shen, B.W.; et al. (September 2004). "DNA binding and cleavage by the HNH homing endonuclease I-HmuI". J. Mol. Biol. 342 (1): 43–56. doi:10.1016/j.jmb.2004.07.032. PMID 15313606. S2CID 15990707.
Zhao, L.; et al. (May 2007). "The restriction fold turns to the dark side: a bacterial homing endonuclease with a PD-(D/E)-XK motif". EMBO Journal. 26 (9): 2432–2442. doi:10.1038/sj.emboj.7601672. PMC 1864971. PMID 17410205.
Steczkiewicz, K; Muszewska, A; Knizewski, L; Rychlewski, L; Ginalski, K (August 2012). "Sequence, structure and functional diversity of PD-(D/E)XK phosphodiesterase superfamily". Nucleic Acids Research. 40 (15): 7016–45. doi:10.1093/nar/gks382. PMC 3424549. PMID 22638584.
Dassa, B.; et al. (March 2009). "Fractured genes: a novel genomic arrangement involving new split inteins and a new homing endonuclease family". Nucleic Acids Research. 37 (8): 2560–2573. doi:10.1093/nar/gkp095. PMC 2677866. PMID 19264795.
Taylor, GK; Heiter, DF; Pietrokovski, S; Stoddard, BL (December 2011). "Activity, specificity and structure of I-Bth0305I: a representative of a new homing endonuclease family". Nucleic Acids Research. 39 (22): 9705–19. doi:10.1093/nar/gkr669. PMC 3239194. PMID 21890897.
Moure CM, Gimble FS, Quiocho FA (October 2002). "Crystal structure of the intein homing endonuclease PI-SceI bound to its recognition sequence". Nat. Struct. Biol. 9 (10): 764–70. doi:10.1038/nsb840. PMID 12219083. S2CID 40192379.

harvard.edu

ui.adsabs.harvard.edu

Edgell DR (February 2009). "Selfish DNA: homing endonucleases find a home". Curr Biol. 19 (3): R115 – R117. Bibcode:2009CBio...19.R115E. doi:10.1016/j.cub.2008.12.019. PMID 19211047. S2CID 2380439.
Kane PM, Yamashiro CT, Wolczyk DF, Neff N, Goebl M, Stevens TH (November 1990). "Protein splicing converts the yeast TFP1 gene product to the 69-kD subunit of the vacuolar H(+)-adenosine triphosphatase". Science. 250 (4981): 651–7. Bibcode:1990Sci...250..651K. doi:10.1126/science.2146742. PMID 2146742.
Perler FB, Comb DG, Jack WE, Moran LS, Qiang B, Kucera RB, Benner J, Slatko BE, Nwankwo DO, Hempstead SK, Carlow CK, Jannasch H (June 1992). "Intervening sequences in an Archaea DNA polymerase gene". PNAS. 89 (12): 5577–81. Bibcode:1992PNAS...89.5577P. doi:10.1073/pnas.89.12.5577. PMC 49335. PMID 1608969.
Flick, K.; et al. (July 1998). "DNA binding and cleavage by the nuclear intron-encoded homing endonuclease I-PpoI". Nature. 394 (6688): 96–101. Bibcode:1998Natur.394...96F. doi:10.1038/27952. PMID 9665136. S2CID 4427957.

nih.gov

pubmed.ncbi.nlm.nih.gov

Edgell DR (February 2009). "Selfish DNA: homing endonucleases find a home". Curr Biol. 19 (3): R115 – R117. Bibcode:2009CBio...19.R115E. doi:10.1016/j.cub.2008.12.019. PMID 19211047. S2CID 2380439.
Jasin M (Jun 1996). "Genetic manipulation of genomonth with rare-cutting endonucleases". Trends Genet. 12 (6): 224–8. doi:10.1016/0168-9525(96)10019-6. PMID 8928227.
Burt A, Koufopanou V (December 2004). "Homing endonuclease genes: the rise and fall and rise again of a selfish element". Curr Opin Genet Dev. 14 (6): 609–15. doi:10.1016/j.gde.2004.09.010. PMID 15531154.
Belfort M, Roberts RJ (September 1995). "Homing endonucleases: keeping the house in order". Nucleic Acids Res. 25 (17): 3379–88. doi:10.1093/nar/25.17.3379. PMC 146926. PMID 9254693.
Chevalier BS, Kortemme T, Chadsey MS, Baker D, Monnat RJ, Stoddard BL (October 2002). "Design, activity, and structure of a highly specific artificial endonuclease". Mol. Cell. 10 (4): 895–905. doi:10.1016/S1097-2765(02)00690-1. PMID 12419232.
Hirata R, Ohsumk Y, Nakano A, Kawasaki H, Suzuki K, Anraku Y (April 1990). "Molecular structure of a gene, VMA1, encoding the catalytic subunit of H(+)-translocating adenosine triphosphatase from vacuolar membranes of Saccharomyces cerevisiae". J Biol Chem. 265 (12): 6726–33. doi:10.1016/S0021-9258(19)39210-5. PMID 2139027.
Kane PM, Yamashiro CT, Wolczyk DF, Neff N, Goebl M, Stevens TH (November 1990). "Protein splicing converts the yeast TFP1 gene product to the 69-kD subunit of the vacuolar H(+)-adenosine triphosphatase". Science. 250 (4981): 651–7. Bibcode:1990Sci...250..651K. doi:10.1126/science.2146742. PMID 2146742.
Perler FB, Comb DG, Jack WE, Moran LS, Qiang B, Kucera RB, Benner J, Slatko BE, Nwankwo DO, Hempstead SK, Carlow CK, Jannasch H (June 1992). "Intervening sequences in an Archaea DNA polymerase gene". PNAS. 89 (12): 5577–81. Bibcode:1992PNAS...89.5577P. doi:10.1073/pnas.89.12.5577. PMC 49335. PMID 1608969.
Jurica MS, Monnat RJ, Stoddard BL (October 1998). "DNA recognition and cleavage by the LAGLIDADG homing endonuclease I-CreI" (PDF). Mol. Cell. 2 (4): 469–76. doi:10.1016/S1097-2765(00)80146-X. PMID 9809068.
Gimble FS, Wang J (October 1996). "Substrate recognition and induced DNA distortion by the PI-SceI endonuclease, an enzyme generated by protein splicing". J Mol Biol. 263 (2): 163–80. doi:10.1006/jmbi.1996.0567. PMID 8913299.
Argast GM, Stephens KM, Emond MJ, Monnat RJ (July 1998). "I-PpoI and I-CreI homing site sequence degeneracy determined by random mutagenesis and sequential in vitro enrichment". J Mol Biol. 280 (3): 345–53. doi:10.1006/jmbi.1998.1886. PMID 9665841.
Shibata T, Nakagawa K, Morishima N (1995). "Multi-site-specific endonucleases and the initiation of homologous genetic recombination in yeast". Adv Biophys. 31: 77–91. doi:10.1016/0065-227X(95)99384-2. PMID 7625280.
Zimmerly S, Guo H, Eskes R, Yang J, Perlman PS, Lambowitz AM (November 1995). "A group II intron RNA is a catalytic component of a DNA endonuclease involved in intron mobility". Cell. 83 (4): 529–38. doi:10.1016/0092-8674(95)90092-6. PMID 7585955. S2CID 10456475.
Roberts RJ, Macelis D (January 1997). "REBASE-restriction enzymes and methylases". Nucleic Acids Res. 25 (1): 248–62. doi:10.1093/nar/25.1.248. PMC 146408. PMID 9016548.
Lambowitz AM, Belfort M (1993). "Introns as mobile genetic elements". Annu Rev Biochem. 62: 587–622. doi:10.1146/annurev.bi.62.070193.003103. PMID 8352597.
Wilson GG (December 1988). "Cloned restriction-modification systems—a review". Gene. 74 (1): 281–9. doi:10.1016/0378-1119(88)90304-6. PMID 3074014.
Heath, P.; et al. (June 1997). "The structure of I-Crel, a group I intron-encoded homing endonuclease". Nature Structural Biology. 4 (6): 468–476. doi:10.1038/nsb0697-468. PMID 9187655. S2CID 12261983.
Duan, X. (May 1997). "Crystal structure of PI-SceI, a homing endonuclease with protein splicing activity". Cell. 89 (4): 555–564. doi:10.1016/S0092-8674(00)80237-8. PMID 9160747. S2CID 14156646.
Van Roey, P.; Fox, KM; et al. (July 2001). "Intertwined structure of the DNA-binding domain of intron endonuclease I-TevI with its substrate". EMBO J. 20 (14): 3631–3637. doi:10.1093/emboj/20.14.3631. PMC 125541. PMID 11447104.
Van Roey, P.; Kowalski, Joseph C.; et al. (July 2002). "Catalytic domain structure and hypothesis for function of GIY-YIG intron endonuclease I-TevI". Nature Structural Biology. 9 (11): 806–811. doi:10.1038/nsb853. PMID 12379841. S2CID 24856337.
Flick, K.; et al. (July 1998). "DNA binding and cleavage by the nuclear intron-encoded homing endonuclease I-PpoI". Nature. 394 (6688): 96–101. Bibcode:1998Natur.394...96F. doi:10.1038/27952. PMID 9665136. S2CID 4427957.
Hafez, M; Hausner, G (August 2012). "Homing endonucleases: DNA scissors on a mission". Genome. 55 (8): 553–69. doi:10.1139/g2012-049. PMID 22891613. S2CID 29183470.
Shen, B.W.; et al. (September 2004). "DNA binding and cleavage by the HNH homing endonuclease I-HmuI". J. Mol. Biol. 342 (1): 43–56. doi:10.1016/j.jmb.2004.07.032. PMID 15313606. S2CID 15990707.
Zhao, L.; et al. (May 2007). "The restriction fold turns to the dark side: a bacterial homing endonuclease with a PD-(D/E)-XK motif". EMBO Journal. 26 (9): 2432–2442. doi:10.1038/sj.emboj.7601672. PMC 1864971. PMID 17410205.
Steczkiewicz, K; Muszewska, A; Knizewski, L; Rychlewski, L; Ginalski, K (August 2012). "Sequence, structure and functional diversity of PD-(D/E)XK phosphodiesterase superfamily". Nucleic Acids Research. 40 (15): 7016–45. doi:10.1093/nar/gks382. PMC 3424549. PMID 22638584.
Dassa, B.; et al. (March 2009). "Fractured genes: a novel genomic arrangement involving new split inteins and a new homing endonuclease family". Nucleic Acids Research. 37 (8): 2560–2573. doi:10.1093/nar/gkp095. PMC 2677866. PMID 19264795.
Taylor, GK; Heiter, DF; Pietrokovski, S; Stoddard, BL (December 2011). "Activity, specificity and structure of I-Bth0305I: a representative of a new homing endonuclease family". Nucleic Acids Research. 39 (22): 9705–19. doi:10.1093/nar/gkr669. PMC 3239194. PMID 21890897.
Moure CM, Gimble FS, Quiocho FA (October 2002). "Crystal structure of the intein homing endonuclease PI-SceI bound to its recognition sequence". Nat. Struct. Biol. 9 (10): 764–70. doi:10.1038/nsb840. PMID 12219083. S2CID 40192379.

ncbi.nlm.nih.gov

Belfort M, Roberts RJ (September 1995). "Homing endonucleases: keeping the house in order". Nucleic Acids Res. 25 (17): 3379–88. doi:10.1093/nar/25.17.3379. PMC 146926. PMID 9254693.
Perler FB, Comb DG, Jack WE, Moran LS, Qiang B, Kucera RB, Benner J, Slatko BE, Nwankwo DO, Hempstead SK, Carlow CK, Jannasch H (June 1992). "Intervening sequences in an Archaea DNA polymerase gene". PNAS. 89 (12): 5577–81. Bibcode:1992PNAS...89.5577P. doi:10.1073/pnas.89.12.5577. PMC 49335. PMID 1608969.
Roberts RJ, Macelis D (January 1997). "REBASE-restriction enzymes and methylases". Nucleic Acids Res. 25 (1): 248–62. doi:10.1093/nar/25.1.248. PMC 146408. PMID 9016548.
Van Roey, P.; Fox, KM; et al. (July 2001). "Intertwined structure of the DNA-binding domain of intron endonuclease I-TevI with its substrate". EMBO J. 20 (14): 3631–3637. doi:10.1093/emboj/20.14.3631. PMC 125541. PMID 11447104.
Zhao, L.; et al. (May 2007). "The restriction fold turns to the dark side: a bacterial homing endonuclease with a PD-(D/E)-XK motif". EMBO Journal. 26 (9): 2432–2442. doi:10.1038/sj.emboj.7601672. PMC 1864971. PMID 17410205.
Steczkiewicz, K; Muszewska, A; Knizewski, L; Rychlewski, L; Ginalski, K (August 2012). "Sequence, structure and functional diversity of PD-(D/E)XK phosphodiesterase superfamily". Nucleic Acids Research. 40 (15): 7016–45. doi:10.1093/nar/gks382. PMC 3424549. PMID 22638584.
Dassa, B.; et al. (March 2009). "Fractured genes: a novel genomic arrangement involving new split inteins and a new homing endonuclease family". Nucleic Acids Research. 37 (8): 2560–2573. doi:10.1093/nar/gkp095. PMC 2677866. PMID 19264795.
Taylor, GK; Heiter, DF; Pietrokovski, S; Stoddard, BL (December 2011). "Activity, specificity and structure of I-Bth0305I: a representative of a new homing endonuclease family". Nucleic Acids Research. 39 (22): 9705–19. doi:10.1093/nar/gkr669. PMC 3239194. PMID 21890897.

semanticscholar.org

api.semanticscholar.org

Edgell DR (February 2009). "Selfish DNA: homing endonucleases find a home". Curr Biol. 19 (3): R115 – R117. Bibcode:2009CBio...19.R115E. doi:10.1016/j.cub.2008.12.019. PMID 19211047. S2CID 2380439.
Zimmerly S, Guo H, Eskes R, Yang J, Perlman PS, Lambowitz AM (November 1995). "A group II intron RNA is a catalytic component of a DNA endonuclease involved in intron mobility". Cell. 83 (4): 529–38. doi:10.1016/0092-8674(95)90092-6. PMID 7585955. S2CID 10456475.
Heath, P.; et al. (June 1997). "The structure of I-Crel, a group I intron-encoded homing endonuclease". Nature Structural Biology. 4 (6): 468–476. doi:10.1038/nsb0697-468. PMID 9187655. S2CID 12261983.
Duan, X. (May 1997). "Crystal structure of PI-SceI, a homing endonuclease with protein splicing activity". Cell. 89 (4): 555–564. doi:10.1016/S0092-8674(00)80237-8. PMID 9160747. S2CID 14156646.
Van Roey, P.; Kowalski, Joseph C.; et al. (July 2002). "Catalytic domain structure and hypothesis for function of GIY-YIG intron endonuclease I-TevI". Nature Structural Biology. 9 (11): 806–811. doi:10.1038/nsb853. PMID 12379841. S2CID 24856337.
Flick, K.; et al. (July 1998). "DNA binding and cleavage by the nuclear intron-encoded homing endonuclease I-PpoI". Nature. 394 (6688): 96–101. Bibcode:1998Natur.394...96F. doi:10.1038/27952. PMID 9665136. S2CID 4427957.
Hafez, M; Hausner, G (August 2012). "Homing endonucleases: DNA scissors on a mission". Genome. 55 (8): 553–69. doi:10.1139/g2012-049. PMID 22891613. S2CID 29183470.
Shen, B.W.; et al. (September 2004). "DNA binding and cleavage by the HNH homing endonuclease I-HmuI". J. Mol. Biol. 342 (1): 43–56. doi:10.1016/j.jmb.2004.07.032. PMID 15313606. S2CID 15990707.
Moure CM, Gimble FS, Quiocho FA (October 2002). "Crystal structure of the intein homing endonuclease PI-SceI bound to its recognition sequence". Nat. Struct. Biol. 9 (10): 764–70. doi:10.1038/nsb840. PMID 12219083. S2CID 40192379.

washington.edu

depts.washington.edu

Jurica MS, Monnat RJ, Stoddard BL (October 1998). "DNA recognition and cleavage by the LAGLIDADG homing endonuclease I-CreI" (PDF). Mol. Cell. 2 (4): 469–76. doi:10.1016/S1097-2765(00)80146-X. PMID 9809068.