Pellicer, Jaume, Fay, Michael F., & Leitch, Ilia J. (2010). The largest eukaryotic genome of them all? Botanical Journal of the Linnean Society, 164(1), 10–15. doi:10.1111/j.1095-8339.2010.01072.x
Motahari, A. S., Bresler, G., & Tse, D. N. C. (2013). Information Theory of DNA Shotgun Sequencing. IEEE Transactions on Information Theory, 59(10), 6273–6289. doi:10.1109/tit.2013.2270273
Koren, S., Schatz, M. C., Walenz, B. P., Martin, J., Howard, J. T., Ganapathy, G., ... Phillippy, A. M. (2012). Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nature Biotechnology, 30(7), 692–+. doi:10.1038/nbt.2280
Kim, P. G., Cho, H. G., & Park, K. (2008). A scaffold analysis tool using mate-pair information in genome sequencing. Journal of Biomedicine and Biotechnology. doi:10.1155/2008/675741
Ham, J. S., Kwak, W., Chang, O. K., Han, G. S., Jeong, S. G., Seol, K. H., ... Kim, H. (2013). De Novo Assembly and Comparative Analysis of the Enterococcus faecalis Genome (KACC 91532) from a Korean Neonate. Journal of Microbiology and Biotechnology, 23(7), 966–973. doi:10.4014/jmb.1303.03045
Cerdeira, L. T., Carneiro, A. R., Ramos, R. T. J., de Almeida, S. S., D'Afonseca, V., Schneider, M. P. C., ... Silva, A. (2011). Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudo tuberculosis I19 as a case study. Journal of Microbiological Methods, 86(2), 218–223. doi:10.1016/j.mimet.2011.05.008.
Wang, Y., Yu, Y., Pan, B., Hao, P., Li, Y., Shao, Z., ... Li, X. (2012). Optimizing hybrid assembly of next-generation sequence data from Enterococcus faecium: a microbe with highly divergent genome. BMC Syst Biol, 6 Suppl 3, S21. doi:10.1186/1752-0509-6-S3-S21
English, A. C., Richards, S., Han, Y., Wang, M., Vee, V., Qu, J. X., ... Gibbs, R. A. (2012). Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology. PLoS ONE, 7(11). doi:10.1371/journal.pone.0047768
Bashir, A., Klammer, A. A., Robins, W. P., Chin, C. S., Webster, D., Paxinos, E., ... Schadt, E. E. (2012). A hybrid approach for the automated finishing of bacterial genomes. Nature Biotechnology, 30(7), 701–+. doi:10.1038/nbt.2288
Goldberg, S. M., Johnson, J., Busam, D., Feldblyum, T., Ferriera, S., Friedman, R., ... Venter, J. C. (2006). A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes. Proc Natl Acad Sci U S A, 103(30), 11240–11245. doi:10.1073/pnas.0604351103
Pevzner, P. A., Tang, H., & Waterman, M. S. (2001). An Eulerian path approach to DNA fragment assembly. Proc Natl Acad Sci U S A, 98(17), 9748-9753. doi:10.1073/pnas.171285098
Ritz, Anna, Bashir, Ali, & Raphael, Benjamin J. (2010). Structural variation analysis with strobe reads. Bioinformatics, 26(10), 1291–1298. doi:10.1093/bioinformatics/btq153
