I-TASSER (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "I-TASSER" in English language version.

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doi.org

Roy A, Kucukural A, Zhang Y (2010). "I-TASSER: a unified platform for automated protein structure and function prediction". Nature Protocols. 5 (4): 725–738. doi:10.1038/nprot.2010.5. PMC 2849174. PMID 20360767.
Roy A, Yang J, Zhang Y (2012). "COFACTOR: An accurate comparative algorithm for structure-based protein function annotation". Nucleic Acids Research. 40 (Web Server issue): W471–W477. doi:10.1093/nar/gks372. PMC 3394312. PMID 22570420.
Zhang C, Freddolino PL, Zhang Y (2017). "COFACTOR: improved protein function prediction by combining structure, sequence and protein-protein interaction information". Nucleic Acids Research. 45 (W1): W291–W299. doi:10.1093/nar/gkx366. PMC 5793808. PMID 28472402.
Moult, J; et al. (1995). "A large-scale experiment to assess protein structure prediction methods" (PDF). Proteins. 23 (3): ii–iv. doi:10.1002/prot.340230303. PMID 8710822.
Battey, JN; et al. (2007). "Automated server predictions in CASP7". Proteins. 69 (Suppl 8): 68–82. doi:10.1002/prot.21761. PMID 17894354.
Wu S, Zhang Y (2007). "LOMETS: A local meta-threading-server for protein structure prediction". Nucleic Acids Research. 35 (10): 3375–3382. doi:10.1093/nar/gkm251. PMC 1904280. PMID 17478507.
Swendsen RH, Wang JS (1986). "Replica Monte Carlo simulation of spin glasses". Physical Review Letters. 57 (21): 2607–2609. doi:10.1103/physrevlett.57.2607. PMID 10033814.
Zhang Y, Skolnick J (2004). "SPICKER: A Clustering Approach to Identify Near-Native Protein Folds". Journal of Computational Chemistry. 25 (6): 865–871. doi:10.1002/jcc.20011. PMID 15011258.
Zhang J, Liang Y, Zhang Y (2011). "Atomic-Level Protein Structure Refinement Using Fragment-Guided Molecular Dynamics Conformation Sampling". Structure. 19 (12): 1784–1795. doi:10.1016/j.str.2011.09.022. PMC 3240822. PMID 22153501.
Xu D, Zhang Y (2011). "Improving the Physical Realism and Structural Accuracy of Protein Models by a Two-step Atomic-level Energy Minimization". Biophysical Journal. 101 (10): 2525–2534. doi:10.1016/j.bpj.2011.10.024. PMC 3218324. PMID 22098752.
Yang J, Roy A, Zhang Y (2013). "Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment". Bioinformatics. 29 (20): 2588–2595. doi:10.1093/bioinformatics/btt447. PMC 3789548. PMID 23975762.
Yang J, Roy A, Zhang Y (2015). "The I-TASSER Suite: Protein structure and function prediction". Nature Methods. 12 (1): 7–8. doi:10.1038/nmeth.3213. PMC 4428668. PMID 25549265.

nih.gov

pubmed.ncbi.nlm.nih.gov

Roy A, Kucukural A, Zhang Y (2010). "I-TASSER: a unified platform for automated protein structure and function prediction". Nature Protocols. 5 (4): 725–738. doi:10.1038/nprot.2010.5. PMC 2849174. PMID 20360767.
Roy A, Yang J, Zhang Y (2012). "COFACTOR: An accurate comparative algorithm for structure-based protein function annotation". Nucleic Acids Research. 40 (Web Server issue): W471–W477. doi:10.1093/nar/gks372. PMC 3394312. PMID 22570420.
Zhang C, Freddolino PL, Zhang Y (2017). "COFACTOR: improved protein function prediction by combining structure, sequence and protein-protein interaction information". Nucleic Acids Research. 45 (W1): W291–W299. doi:10.1093/nar/gkx366. PMC 5793808. PMID 28472402.
Moult, J; et al. (1995). "A large-scale experiment to assess protein structure prediction methods" (PDF). Proteins. 23 (3): ii–iv. doi:10.1002/prot.340230303. PMID 8710822.
Battey, JN; et al. (2007). "Automated server predictions in CASP7". Proteins. 69 (Suppl 8): 68–82. doi:10.1002/prot.21761. PMID 17894354.
Wu S, Zhang Y (2007). "LOMETS: A local meta-threading-server for protein structure prediction". Nucleic Acids Research. 35 (10): 3375–3382. doi:10.1093/nar/gkm251. PMC 1904280. PMID 17478507.
Swendsen RH, Wang JS (1986). "Replica Monte Carlo simulation of spin glasses". Physical Review Letters. 57 (21): 2607–2609. doi:10.1103/physrevlett.57.2607. PMID 10033814.
Zhang Y, Skolnick J (2004). "SPICKER: A Clustering Approach to Identify Near-Native Protein Folds". Journal of Computational Chemistry. 25 (6): 865–871. doi:10.1002/jcc.20011. PMID 15011258.
Zhang J, Liang Y, Zhang Y (2011). "Atomic-Level Protein Structure Refinement Using Fragment-Guided Molecular Dynamics Conformation Sampling". Structure. 19 (12): 1784–1795. doi:10.1016/j.str.2011.09.022. PMC 3240822. PMID 22153501.
Xu D, Zhang Y (2011). "Improving the Physical Realism and Structural Accuracy of Protein Models by a Two-step Atomic-level Energy Minimization". Biophysical Journal. 101 (10): 2525–2534. doi:10.1016/j.bpj.2011.10.024. PMC 3218324. PMID 22098752.
Yang J, Roy A, Zhang Y (2013). "Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment". Bioinformatics. 29 (20): 2588–2595. doi:10.1093/bioinformatics/btt447. PMC 3789548. PMID 23975762.
Yang J, Roy A, Zhang Y (2015). "The I-TASSER Suite: Protein structure and function prediction". Nature Methods. 12 (1): 7–8. doi:10.1038/nmeth.3213. PMC 4428668. PMID 25549265.

ncbi.nlm.nih.gov

Roy A, Kucukural A, Zhang Y (2010). "I-TASSER: a unified platform for automated protein structure and function prediction". Nature Protocols. 5 (4): 725–738. doi:10.1038/nprot.2010.5. PMC 2849174. PMID 20360767.
Roy A, Yang J, Zhang Y (2012). "COFACTOR: An accurate comparative algorithm for structure-based protein function annotation". Nucleic Acids Research. 40 (Web Server issue): W471–W477. doi:10.1093/nar/gks372. PMC 3394312. PMID 22570420.
Zhang C, Freddolino PL, Zhang Y (2017). "COFACTOR: improved protein function prediction by combining structure, sequence and protein-protein interaction information". Nucleic Acids Research. 45 (W1): W291–W299. doi:10.1093/nar/gkx366. PMC 5793808. PMID 28472402.
Wu S, Zhang Y (2007). "LOMETS: A local meta-threading-server for protein structure prediction". Nucleic Acids Research. 35 (10): 3375–3382. doi:10.1093/nar/gkm251. PMC 1904280. PMID 17478507.
Zhang J, Liang Y, Zhang Y (2011). "Atomic-Level Protein Structure Refinement Using Fragment-Guided Molecular Dynamics Conformation Sampling". Structure. 19 (12): 1784–1795. doi:10.1016/j.str.2011.09.022. PMC 3240822. PMID 22153501.
Xu D, Zhang Y (2011). "Improving the Physical Realism and Structural Accuracy of Protein Models by a Two-step Atomic-level Energy Minimization". Biophysical Journal. 101 (10): 2525–2534. doi:10.1016/j.bpj.2011.10.024. PMC 3218324. PMID 22098752.
Yang J, Roy A, Zhang Y (2013). "Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment". Bioinformatics. 29 (20): 2588–2595. doi:10.1093/bioinformatics/btt447. PMC 3789548. PMID 23975762.
Yang J, Roy A, Zhang Y (2015). "The I-TASSER Suite: Protein structure and function prediction". Nature Methods. 12 (1): 7–8. doi:10.1038/nmeth.3213. PMC 4428668. PMID 25549265.

zenodo.org

Moult, J; et al. (1995). "A large-scale experiment to assess protein structure prediction methods" (PDF). Proteins. 23 (3): ii–iv. doi:10.1002/prot.340230303. PMID 8710822.