James J. Collins (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "James J. Collins" in English language version.

refsWebsite

Global rank English rank

73nih.gov

4^th place

46doi.org

2^nd place

23harvard.edu

18^th place

17^th place

16semanticscholar.org

11^th place

8^th place

7mit.edu

415^th place

327^th place

5web.archive.org

1^st place

3handle.net

102^nd place

76^th place

2holycross.edu

low place

2worldcat.org

5^th place

2ox.ac.uk

613^th place

456^th place

1americanscientist.org

7,231^st place

5,635^th place

1books.google.com

3^rd place

1aimbe.org

low place

1newspapers.com

55^th place

36^th place

1penguinrandomhouse.com

2,012^th place

1,135^th place

1the-scientist.com

7,827^th place

5,905^th place

1asbmb.org

low place

1cataliocapital.com

low place

1nature.com

234^th place

397^th place

1xconomy.com

low place

6,978^th place

1arxiv.org

69^th place

59^th place

1technologyreview.com

1,943^rd place

1,253^rd place

1sciam.com

6,119^th place

6,509^th place

1macfound.org

low place

6,618^th place

1theguardian.com

12^th place

11^th place

1bu.edu

2,120^th place

1,328^th place

1irishamerica.com

low place

7,923^rd place

1https

low place

aimbe.org

"James Collins, Ph.D. | AIMBE College of Fellows Class of 2000". American Institute for Medical and Biological Engineering. Retrieved December 19, 2023 – via Xconomy.

americanscientist.org

Saunders, Fenella (February 6, 2023). "Synthesizing Engineering and Biology". American Scientist. Sigma Xi. Retrieved December 19, 2023.

arxiv.org

Hasty J, Pradines J, Dolnik M, Collins JJ (2000). "Noise-based switches and amplifiers for gene expression". Proc Natl Acad Sci U S A. 97 (5): 2075–80. arXiv:physics/0003105. Bibcode:2000PNAS...97.2075H. doi:10.1073/pnas.040411297. PMC 15756. PMID 10681449.{{cite journal}}: CS1 maint: multiple names: authors list (link)

asbmb.org

"Collins honored by Sigma Xi; Marnett steps down as dean". www.asbmb.org. Retrieved December 20, 2023.

books.google.com

Khan, Firdos Alam (May 8, 2014). Biotechnology in Medical Sciences. CRC Press. ISBN 978-1-4822-2367-5.

bu.edu

Brick, Tricia (Spring 2006). "Genius at Work". Bostonia. pp. 20–25. Archived from the original on October 19, 2012. Retrieved June 12, 2009.

cataliocapital.com

"Jim J. Collins, Ph.D. | Catalio Capital Management". www.cataliocapital.com. Retrieved December 19, 2023.^{[permanent dead link]}

doi.org

Gardner, TS; Cantor CR; Collins JJ (January 20, 2000). "Construction of a genetic toggle switch in Escherichia coli". Nature. 403 (6767): 339–342. Bibcode:2000Natur.403..339G. doi:10.1038/35002131. PMID 10659857. S2CID 345059.
Elowitz MB, Leibler S (2000). "A synthetic oscillatory network of transcriptional regulators". Nature. 403 (6767): 335–8. Bibcode:2000Natur.403..335E. doi:10.1038/35002125. PMID 10659856. S2CID 41632754.
Kobayashi H, Kaern M, Araki M, Chung K, Gardner TS, Cantor CR; et al. (2004). "Programmable cells: interfacing natural and engineered gene networks". Proc Natl Acad Sci U S A. 101 (22): 8414–9. Bibcode:2004PNAS..101.8414K. doi:10.1073/pnas.0402940101. PMC 420408. PMID 15159530.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Mao N, Cubillos-Ruiz A, Cameron DE, Collins JJ (2018). "Probiotic strains detect and suppress cholera in mice". Sci Transl Med. 10 (445). doi:10.1126/scitranslmed.aao2586. PMC 7821980. PMID 29899022.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Cubillos-Ruiz A, Alcantar MA, Donghia NM, Cárdenas P, Avila-Pacheco J, Collins JJ (2022). "An engineered live biotherapeutic for the prevention of antibiotic-induced dysbiosis". Nat Biomed Eng. 6 (7): 910–921. doi:10.1038/s41551-022-00871-9. PMID 35411114. S2CID 248100868.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Isaacs, FJ; Dwyer, DJ; Ding, C; Pervouchine, DD; Cantor, CR; Collins, JJ (2004). "Engineered riboregulators enable post-transcriptional control of gene expression". Nat Biotechnol. 22 (7): 823–4 2004. doi:10.1038/nbt986. PMID 15208640. S2CID 7289450.
Green AA, Silver PA, Collins JJ, Yin P (2014). "Toehold switches: de-novo-designed regulators of gene expression". Cell. 159 (4): 925–39. doi:10.1016/j.cell.2014.10.002. PMC 4265554. PMID 25417166.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Green AA, Kim J, Ma D, Silver PA, Collins JJ, Yin P (2017). "Complex cellular logic computation using ribocomputing devices". Nature. 548 (7665): 117–121. Bibcode:2017Natur.548..117G. doi:10.1038/nature23271. PMC 6078203. PMID 28746304.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Angenent-Mari NM, Garruss AS, Soenksen LR, Church G, Collins JJ (2020). "A deep learning approach to programmable RNA switches". Nat Commun. 11 (1): 5057. Bibcode:2020NatCo..11.5057A. doi:10.1038/s41467-020-18677-1. PMC 7541447. PMID 33028812.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Zhao EM, Mao AS, de Puig H, Zhang K, Tippens ND, Tan X; et al. (2022). "RNA-responsive elements for eukaryotic translational control". Nat Biotechnol. 40 (4): 539–545. doi:10.1038/s41587-021-01068-2. PMID 34711989. S2CID 240153815.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Gayet RV, Ilia K, Razavi S, Tippens ND, Lalwani MA, Zhang K; et al. (2023). "Autocatalytic base editing for RNA-responsive translational control". Nat Commun. 14 (1): 1339. Bibcode:2023NatCo..14.1339G. doi:10.1038/s41467-023-36851-z. PMC 10008589. PMID 36906659.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Friedland AE, Lu TK, Wang X, Shi D, Church G, Collins JJ (2009). "Synthetic gene networks that count". Science. 324 (5931): 1199–202. Bibcode:2009Sci...324.1199F. doi:10.1126/science.1172005. PMC 2690711. PMID 19478183.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Callura JM, Dwyer DJ, Isaacs FJ, Cantor CR, Collins JJ (2010). "Tracking, tuning, and terminating microbial physiology using synthetic riboregulators". Proc Natl Acad Sci U S A. 107 (36): 15898–903. Bibcode:2010PNAS..10715898C. doi:10.1073/pnas.1009747107. PMC 2936621. PMID 20713708.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Chan CT, Lee JW, Cameron DE, Bashor CJ, Collins JJ (2016). "'Deadman' and 'Passcode' microbial kill switches for bacterial containment". Nat Chem Biol. 12 (2): 82–6. doi:10.1038/nchembio.1979. PMC 4718764. PMID 26641934.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Lu TK, Collins JJ (2007). "Dispersing biofilms with engineered enzymatic bacteriophage". Proc Natl Acad Sci U S A. 104 (27): 11197–202. Bibcode:2007PNAS..10411197L. doi:10.1073/pnas.0704624104. PMC 1899193. PMID 17592147.
Lu TK, Collins JJ (2009). "Engineered bacteriophage targeting gene networks as adjuvants for antibiotic therapy". Proc Natl Acad Sci U S A. 106 (12): 4629–34. Bibcode:2009PNAS..106.4629L. doi:10.1073/pnas.0800442106. PMC 2649960. PMID 19255432.
Callura JM, Cantor CR, Collins JJ (2012). "Genetic switchboard for synthetic biology applications". Proc Natl Acad Sci U S A. 109 (15): 5850–5. Bibcode:2012PNAS..109.5850C. doi:10.1073/pnas.1203808109. PMC 3326468. PMID 22454498.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Deans TL, Cantor CR, Collins JJ (2007). "A tunable genetic switch based on RNAi and repressor proteins for regulating gene expression in mammalian cells". Cell. 130 (2): 363–72. doi:10.1016/j.cell.2007.05.045. PMID 17662949. S2CID 7960766.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Cho JH, Collins JJ, Wong WW (2018). "Universal Chimeric Antigen Receptors for Multiplexed and Logical Control of T Cell Responses". Cell. 173 (6): 1426–1438.e11. doi:10.1016/j.cell.2018.03.038. PMC 5984158. PMID 29706540.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Cho JH, Okuma A, Sofjan K, Lee S, Collins JJ, Wong WW (2021). "Engineering advanced logic and distributed computing in human CAR immune cells". Nat Commun. 12 (1): 792. Bibcode:2021NatCo..12..792C. doi:10.1038/s41467-021-21078-7. PMC 7862674. PMID 33542232.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Pardee K, Green AA, Ferrante T, Cameron DE, DaleyKeyser A, Yin P; et al. (2014). "Paper-based synthetic gene networks". Cell. 159 (4): 940–54. doi:10.1016/j.cell.2014.10.004. PMC 4243060. PMID 25417167.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Pardee K, Green AA, Takahashi MK, Braff D, Lambert G, Lee JW; et al. (2016). "Rapid, Low-Cost Detection of Zika Virus Using Programmable Biomolecular Components". Cell. 165 (5): 1255–1266. doi:10.1016/j.cell.2016.04.059. hdl:1721.1/109241. PMID 27160350. S2CID 3278532.{{cite journal}}: CS1 maint: multiple names: authors list (link)
de Puig H, Lee RA, Najjar D, Tan X, Soeknsen LR, Angenent-Mari NM; et al. (2021). "Minimally instrumented SHERLOCK (miSHERLOCK) for CRISPR-based point-of-care diagnosis of SARS-CoV-2 and emerging variants". Sci Adv. 7 (32). Bibcode:2021SciA....7.2944D. doi:10.1126/sciadv.abh2944. PMC 8346217. PMID 34362739.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Karlikow M, da Silva SJR, Guo Y, Cicek S, Krokovsky L, Homme P; et al. (2022). "Field validation of the performance of paper-based tests for the detection of the Zika and chikungunya viruses in serum samples". Nat Biomed Eng. 6 (3): 246–256. doi:10.1038/s41551-022-00850-0. PMC 8940623. PMID 35256758.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Nguyen PQ, Soenksen LR, Donghia NM, Angenent-Mari NM, de Puig H, Huang A; et al. (2021). "Wearable materials with embedded synthetic biology sensors for biomolecule detection". Nat Biotechnol. 39 (11): 1366–1374. doi:10.1038/s41587-021-00950-3. hdl:1721.1/131278. PMID 34183860. S2CID 235673261.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Pardee K, Slomovic S, Nguyen PQ, Lee JW, Donghia N, Burrill D; et al. (2016). "Portable, On-Demand Biomolecular Manufacturing". Cell. 167 (1): 248–259.e12. doi:10.1016/j.cell.2016.09.013. hdl:1721.1/111574. PMID 27662092. S2CID 8481521.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Warren L, Manos PD, Ahfeldt T, Loh YH, Li H, Lau F; et al. (2010). "Highly efficient reprogramming to pluripotency and directed differentiation of human cells with synthetic modified mRNA". Cell Stem Cell. 7 (5): 618–30. doi:10.1016/j.stem.2010.08.012. PMC 3656821. PMID 20888316.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Hasty J, Pradines J, Dolnik M, Collins JJ (2000). "Noise-based switches and amplifiers for gene expression". Proc Natl Acad Sci U S A. 97 (5): 2075–80. arXiv:physics/0003105. Bibcode:2000PNAS...97.2075H. doi:10.1073/pnas.040411297. PMC 15756. PMID 10681449.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Isaacs FJ, Hasty J, Cantor CR, Collins JJ (2003). "Prediction and measurement of an autoregulatory genetic module". Proc Natl Acad Sci U S A. 100 (13): 7714–9. Bibcode:2003PNAS..100.7714I. doi:10.1073/pnas.1332628100. PMC 164653. PMID 12808135.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Blake WJ, KAErn M, Cantor CR, Collins JJ (2003). "Noise in eukaryotic gene expression". Nature. 422 (6932): 633–7. Bibcode:2003Natur.422..633B. doi:10.1038/nature01546. PMID 12687005. S2CID 4347106.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Blake WJ, Balázsi G, Kohanski MA, Isaacs FJ, Murphy KF, Kuang Y; et al. (2006). "Phenotypic consequences of promoter-mediated transcriptional noise". Mol Cell. 24 (6): 853–65. doi:10.1016/j.molcel.2006.11.003. PMID 17189188.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Ellis T, Wang X, Collins JJ (2009). "Diversity-based, model-guided construction of synthetic gene networks with predicted functions". Nat Biotechnol. 27 (5): 465–71. doi:10.1038/nbt.1536. PMC 2680460. PMID 19377462.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Guido NJ, Wang X, Adalsteinsson D, McMillen D, Hasty J, Cantor CR; et al. (2006). "A bottom-up approach to gene regulation". Nature. 439 (7078): 856–60. Bibcode:2006Natur.439..856G. doi:10.1038/nature04473. PMID 16482159. S2CID 4418558.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Yeung MK, Tegnér J, Collins JJ (2002). "Reverse engineering gene networks using singular value decomposition and robust regression". Proc Natl Acad Sci U S A. 99 (9): 6163–8. Bibcode:2002PNAS...99.6163Y. doi:10.1073/pnas.092576199. PMC 122920. PMID 11983907.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Gardner, TS; di Bernardo D; Lorenz D; Collins JJ (July 4, 2003). "Inferring genetic networks and identifying compound of action via expression profiling". Science. 301 (5629): 102–105. doi:10.1126/science.1081900. PMID 12843395. S2CID 8356492.
Kohanski, MA; Dwyer DJ; Hayete B; Lawrence CA; Collins JJ. (2007). "A common mechanism of cellular death induced by bactericidal antibiotics". Cell. 130 (5): 797–810. doi:10.1016/j.cell.2007.06.049. PMID 17803904. S2CID 1103795.
Kohanski MA, Dwyer DJ, Wierzbowski J, Cottarel G, Collins JJ (2008). "Mistranslation of membrane proteins and two-component system activation trigger antibiotic-mediated cell death". Cell. 135 (4): 679–90. doi:10.1016/j.cell.2008.09.038. PMC 2684502. PMID 19013277.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Allison KR, Brynildsen MP, Collins JJ (2011). "Metabolite-enabled eradication of bacterial persisters by aminoglycosides". Nature. 473 (7346): 216–20. Bibcode:2011Natur.473..216A. doi:10.1038/nature10069. PMC 3145328. PMID 21562562.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Kohanski, MA; DePristo MA; Collins JJ. (2010). "Sublethal antibiotic treatment leads to multidrug resistance via radical-induced mutagenesis". Molecular Cell. 37 (3): 311–320. doi:10.1016/j.molcel.2010.01.003. PMC 2840266. PMID 20159551.
Lee, HH; Molla MN; Cantor CR; Collins JJ. (2010). "Bacterial charity work leads to population-wide resistance". Nature. 467 (7311): 82–85. Bibcode:2010Natur.467...82L. doi:10.1038/nature09354. PMC 2936489. PMID 20811456.
Stokes, Jonathan M.; Yang, Kevin; Swanson, Kyle; Jin, Wengong; Cubillos-Ruiz, Andres; Donghia, Nina M.; MacNair, Craig R.; French, Shawn; Carfrae, Lindsey A.; Bloom-Ackermann, Zohar; Tran, Victoria M. (February 20, 2020). "A Deep Learning Approach to Antibiotic Discovery". Cell. 180 (4): 688–702.e13. doi:10.1016/j.cell.2020.01.021. ISSN 1097-4172. PMC 8349178. PMID 32084340.
Collins JJ (1994). "Random walking during quiet standing". Phys Rev Lett. 73 (5): 764–767. Bibcode:1994PhRvL..73..764C. doi:10.1103/PhysRevLett.73.764. PMID 10057531.
Collins JJ, Chow CC, Imhoff TT (1995). "Stochastic resonance without tuning". Nature. 376 (6537): 236–8. Bibcode:1995Natur.376..236C. doi:10.1038/376236a0. PMID 7617033. S2CID 4314968.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Collins JJ, Imhoff TT, Grigg P (1996). "Noise-enhanced information transmission in rat SA1 cutaneous mechanoreceptors via aperiodic stochastic resonance". J Neurophysiol. 76 (1): 642–5. doi:10.1152/jn.1996.76.1.642. PMID 8836253.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Collins JJ, Imhoff TT, Grigg P (1996). "Noise-enhanced tactile sensation". Nature. 383 (6603): 770. Bibcode:1996Natur.383..770C. doi:10.1038/383770a0. PMID 8893000. S2CID 3660648.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Priplata, A; Niemi J; Harry J; Lipsitz LA; Collins JJ (October 4, 2003). "Vibrating insoles and balance control in elderly people". The Lancet. 362 (9390): 1123–1124. doi:10.1016/S0140-6736(03)14470-4. PMID 14550702. S2CID 33216209.

handle.net

hdl.handle.net

Pardee K, Green AA, Takahashi MK, Braff D, Lambert G, Lee JW; et al. (2016). "Rapid, Low-Cost Detection of Zika Virus Using Programmable Biomolecular Components". Cell. 165 (5): 1255–1266. doi:10.1016/j.cell.2016.04.059. hdl:1721.1/109241. PMID 27160350. S2CID 3278532.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Nguyen PQ, Soenksen LR, Donghia NM, Angenent-Mari NM, de Puig H, Huang A; et al. (2021). "Wearable materials with embedded synthetic biology sensors for biomolecule detection". Nat Biotechnol. 39 (11): 1366–1374. doi:10.1038/s41587-021-00950-3. hdl:1721.1/131278. PMID 34183860. S2CID 235673261.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Pardee K, Slomovic S, Nguyen PQ, Lee JW, Donghia N, Burrill D; et al. (2016). "Portable, On-Demand Biomolecular Manufacturing". Cell. 167 (1): 248–259.e12. doi:10.1016/j.cell.2016.09.013. hdl:1721.1/111574. PMID 27662092. S2CID 8481521.{{cite journal}}: CS1 maint: multiple names: authors list (link)

harvard.edu

ui.adsabs.harvard.edu

Gardner, TS; Cantor CR; Collins JJ (January 20, 2000). "Construction of a genetic toggle switch in Escherichia coli". Nature. 403 (6767): 339–342. Bibcode:2000Natur.403..339G. doi:10.1038/35002131. PMID 10659857. S2CID 345059.
Elowitz MB, Leibler S (2000). "A synthetic oscillatory network of transcriptional regulators". Nature. 403 (6767): 335–8. Bibcode:2000Natur.403..335E. doi:10.1038/35002125. PMID 10659856. S2CID 41632754.
Kobayashi H, Kaern M, Araki M, Chung K, Gardner TS, Cantor CR; et al. (2004). "Programmable cells: interfacing natural and engineered gene networks". Proc Natl Acad Sci U S A. 101 (22): 8414–9. Bibcode:2004PNAS..101.8414K. doi:10.1073/pnas.0402940101. PMC 420408. PMID 15159530.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Green AA, Kim J, Ma D, Silver PA, Collins JJ, Yin P (2017). "Complex cellular logic computation using ribocomputing devices". Nature. 548 (7665): 117–121. Bibcode:2017Natur.548..117G. doi:10.1038/nature23271. PMC 6078203. PMID 28746304.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Angenent-Mari NM, Garruss AS, Soenksen LR, Church G, Collins JJ (2020). "A deep learning approach to programmable RNA switches". Nat Commun. 11 (1): 5057. Bibcode:2020NatCo..11.5057A. doi:10.1038/s41467-020-18677-1. PMC 7541447. PMID 33028812.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Gayet RV, Ilia K, Razavi S, Tippens ND, Lalwani MA, Zhang K; et al. (2023). "Autocatalytic base editing for RNA-responsive translational control". Nat Commun. 14 (1): 1339. Bibcode:2023NatCo..14.1339G. doi:10.1038/s41467-023-36851-z. PMC 10008589. PMID 36906659.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Friedland AE, Lu TK, Wang X, Shi D, Church G, Collins JJ (2009). "Synthetic gene networks that count". Science. 324 (5931): 1199–202. Bibcode:2009Sci...324.1199F. doi:10.1126/science.1172005. PMC 2690711. PMID 19478183.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Callura JM, Dwyer DJ, Isaacs FJ, Cantor CR, Collins JJ (2010). "Tracking, tuning, and terminating microbial physiology using synthetic riboregulators". Proc Natl Acad Sci U S A. 107 (36): 15898–903. Bibcode:2010PNAS..10715898C. doi:10.1073/pnas.1009747107. PMC 2936621. PMID 20713708.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Lu TK, Collins JJ (2007). "Dispersing biofilms with engineered enzymatic bacteriophage". Proc Natl Acad Sci U S A. 104 (27): 11197–202. Bibcode:2007PNAS..10411197L. doi:10.1073/pnas.0704624104. PMC 1899193. PMID 17592147.
Lu TK, Collins JJ (2009). "Engineered bacteriophage targeting gene networks as adjuvants for antibiotic therapy". Proc Natl Acad Sci U S A. 106 (12): 4629–34. Bibcode:2009PNAS..106.4629L. doi:10.1073/pnas.0800442106. PMC 2649960. PMID 19255432.
Callura JM, Cantor CR, Collins JJ (2012). "Genetic switchboard for synthetic biology applications". Proc Natl Acad Sci U S A. 109 (15): 5850–5. Bibcode:2012PNAS..109.5850C. doi:10.1073/pnas.1203808109. PMC 3326468. PMID 22454498.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Cho JH, Okuma A, Sofjan K, Lee S, Collins JJ, Wong WW (2021). "Engineering advanced logic and distributed computing in human CAR immune cells". Nat Commun. 12 (1): 792. Bibcode:2021NatCo..12..792C. doi:10.1038/s41467-021-21078-7. PMC 7862674. PMID 33542232.{{cite journal}}: CS1 maint: multiple names: authors list (link)
de Puig H, Lee RA, Najjar D, Tan X, Soeknsen LR, Angenent-Mari NM; et al. (2021). "Minimally instrumented SHERLOCK (miSHERLOCK) for CRISPR-based point-of-care diagnosis of SARS-CoV-2 and emerging variants". Sci Adv. 7 (32). Bibcode:2021SciA....7.2944D. doi:10.1126/sciadv.abh2944. PMC 8346217. PMID 34362739.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Hasty J, Pradines J, Dolnik M, Collins JJ (2000). "Noise-based switches and amplifiers for gene expression". Proc Natl Acad Sci U S A. 97 (5): 2075–80. arXiv:physics/0003105. Bibcode:2000PNAS...97.2075H. doi:10.1073/pnas.040411297. PMC 15756. PMID 10681449.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Isaacs FJ, Hasty J, Cantor CR, Collins JJ (2003). "Prediction and measurement of an autoregulatory genetic module". Proc Natl Acad Sci U S A. 100 (13): 7714–9. Bibcode:2003PNAS..100.7714I. doi:10.1073/pnas.1332628100. PMC 164653. PMID 12808135.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Blake WJ, KAErn M, Cantor CR, Collins JJ (2003). "Noise in eukaryotic gene expression". Nature. 422 (6932): 633–7. Bibcode:2003Natur.422..633B. doi:10.1038/nature01546. PMID 12687005. S2CID 4347106.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Guido NJ, Wang X, Adalsteinsson D, McMillen D, Hasty J, Cantor CR; et al. (2006). "A bottom-up approach to gene regulation". Nature. 439 (7078): 856–60. Bibcode:2006Natur.439..856G. doi:10.1038/nature04473. PMID 16482159. S2CID 4418558.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Yeung MK, Tegnér J, Collins JJ (2002). "Reverse engineering gene networks using singular value decomposition and robust regression". Proc Natl Acad Sci U S A. 99 (9): 6163–8. Bibcode:2002PNAS...99.6163Y. doi:10.1073/pnas.092576199. PMC 122920. PMID 11983907.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Allison KR, Brynildsen MP, Collins JJ (2011). "Metabolite-enabled eradication of bacterial persisters by aminoglycosides". Nature. 473 (7346): 216–20. Bibcode:2011Natur.473..216A. doi:10.1038/nature10069. PMC 3145328. PMID 21562562.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Lee, HH; Molla MN; Cantor CR; Collins JJ. (2010). "Bacterial charity work leads to population-wide resistance". Nature. 467 (7311): 82–85. Bibcode:2010Natur.467...82L. doi:10.1038/nature09354. PMC 2936489. PMID 20811456.
Collins JJ (1994). "Random walking during quiet standing". Phys Rev Lett. 73 (5): 764–767. Bibcode:1994PhRvL..73..764C. doi:10.1103/PhysRevLett.73.764. PMID 10057531.
Collins JJ, Chow CC, Imhoff TT (1995). "Stochastic resonance without tuning". Nature. 376 (6537): 236–8. Bibcode:1995Natur.376..236C. doi:10.1038/376236a0. PMID 7617033. S2CID 4314968.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Collins JJ, Imhoff TT, Grigg P (1996). "Noise-enhanced tactile sensation". Nature. 383 (6603): 770. Bibcode:1996Natur.383..770C. doi:10.1038/383770a0. PMID 8893000. S2CID 3660648.{{cite journal}}: CS1 maint: multiple names: authors list (link)

holycross.edu

Reardon, Michael (Winter 2007). "The Profile: James J. Collins Jr. '87". Holy Cross Magazine. Vol. 41, no. 1. College of the Holy Cross. p. 80. Archived from the original on August 22, 2016. Retrieved April 15, 2007.
"Past Fenwick Scholars, Projects and Advisors". College of the Holy Cross. Retrieved December 19, 2023.

https

"Duke Senior Launches Himself Towards Big Regwards". Duke Today. October 19, 2023. Archived from the original on June 25, 2020. Retrieved September 29, 2024. {{cite web}}: Check |url= value (help)

irishamerica.com

"Healthcare and Life Sciences: James Collins". Irish America. October 5, 2022. Retrieved December 19, 2023.

macfound.org

"MacArthur Fellows, October 2003". John D. and Catherine T. MacArthur Foundation. Archived from the original on October 16, 2007. Retrieved April 15, 2007.

mit.edu

news.mit.edu

Trafton, Anne (December 20, 2023). "Using AI, MIT researchers identify a new class of antibiotic candidates". MIT News. Massachusetts Institute of Technology. Retrieved May 6, 2024.
Trafton, Anne (November 14, 2015). "Reprogramming biology: Biological engineer James Collins designs genetic circuits with novel functions". MIT News. Massachusetts Institute of Technology. Retrieved December 19, 2023.
"Regina Barzilay, James Collins, and Phil Sharp join leadership of new effort on machine learning in health". MIT News. Massachusetts Institute of Technology. October 3, 2018. Retrieved November 13, 2020.
"Jim Collins receives funding to harness AI for drug discovery". MIT News | Massachusetts Institute of Technology. April 23, 2020. Retrieved November 13, 2020.
Shaner, Karen (April 13, 2016). "James Collins appointed 2016 Allen Distinguished Investigator". MIT News. Massachusetts Institute of Technology. Retrieved December 19, 2023.

jclinic.mit.edu

"People". J-Clinic. Archived from the original on November 30, 2021. Retrieved November 13, 2020.

hst.mit.edu

"James J. Collins named a Citation Laureate". Harvard-MIT Health Sciences and Technology. September 22, 2023. Retrieved December 19, 2023.

nature.com

Editorial: Ten years of synergy, Nature 463, 269-270 (21 January 2010), doi:10.1038/463269b

newspapers.com

Baker, Billy (November 24, 2008). "Dream gig grants him freedom to explore". The Boston Globe. p. 16. Retrieved December 20, 2023.

nih.gov

pubmed.ncbi.nlm.nih.gov

Gardner, TS; Cantor CR; Collins JJ (January 20, 2000). "Construction of a genetic toggle switch in Escherichia coli". Nature. 403 (6767): 339–342. Bibcode:2000Natur.403..339G. doi:10.1038/35002131. PMID 10659857. S2CID 345059.
Elowitz MB, Leibler S (2000). "A synthetic oscillatory network of transcriptional regulators". Nature. 403 (6767): 335–8. Bibcode:2000Natur.403..335E. doi:10.1038/35002125. PMID 10659856. S2CID 41632754.
Kobayashi H, Kaern M, Araki M, Chung K, Gardner TS, Cantor CR; et al. (2004). "Programmable cells: interfacing natural and engineered gene networks". Proc Natl Acad Sci U S A. 101 (22): 8414–9. Bibcode:2004PNAS..101.8414K. doi:10.1073/pnas.0402940101. PMC 420408. PMID 15159530.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Mao N, Cubillos-Ruiz A, Cameron DE, Collins JJ (2018). "Probiotic strains detect and suppress cholera in mice". Sci Transl Med. 10 (445). doi:10.1126/scitranslmed.aao2586. PMC 7821980. PMID 29899022.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Cubillos-Ruiz A, Alcantar MA, Donghia NM, Cárdenas P, Avila-Pacheco J, Collins JJ (2022). "An engineered live biotherapeutic for the prevention of antibiotic-induced dysbiosis". Nat Biomed Eng. 6 (7): 910–921. doi:10.1038/s41551-022-00871-9. PMID 35411114. S2CID 248100868.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Isaacs, FJ; Dwyer, DJ; Ding, C; Pervouchine, DD; Cantor, CR; Collins, JJ (2004). "Engineered riboregulators enable post-transcriptional control of gene expression". Nat Biotechnol. 22 (7): 823–4 2004. doi:10.1038/nbt986. PMID 15208640. S2CID 7289450.
Green AA, Silver PA, Collins JJ, Yin P (2014). "Toehold switches: de-novo-designed regulators of gene expression". Cell. 159 (4): 925–39. doi:10.1016/j.cell.2014.10.002. PMC 4265554. PMID 25417166.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Green AA, Kim J, Ma D, Silver PA, Collins JJ, Yin P (2017). "Complex cellular logic computation using ribocomputing devices". Nature. 548 (7665): 117–121. Bibcode:2017Natur.548..117G. doi:10.1038/nature23271. PMC 6078203. PMID 28746304.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Angenent-Mari NM, Garruss AS, Soenksen LR, Church G, Collins JJ (2020). "A deep learning approach to programmable RNA switches". Nat Commun. 11 (1): 5057. Bibcode:2020NatCo..11.5057A. doi:10.1038/s41467-020-18677-1. PMC 7541447. PMID 33028812.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Zhao EM, Mao AS, de Puig H, Zhang K, Tippens ND, Tan X; et al. (2022). "RNA-responsive elements for eukaryotic translational control". Nat Biotechnol. 40 (4): 539–545. doi:10.1038/s41587-021-01068-2. PMID 34711989. S2CID 240153815.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Gayet RV, Ilia K, Razavi S, Tippens ND, Lalwani MA, Zhang K; et al. (2023). "Autocatalytic base editing for RNA-responsive translational control". Nat Commun. 14 (1): 1339. Bibcode:2023NatCo..14.1339G. doi:10.1038/s41467-023-36851-z. PMC 10008589. PMID 36906659.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Friedland AE, Lu TK, Wang X, Shi D, Church G, Collins JJ (2009). "Synthetic gene networks that count". Science. 324 (5931): 1199–202. Bibcode:2009Sci...324.1199F. doi:10.1126/science.1172005. PMC 2690711. PMID 19478183.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Callura JM, Dwyer DJ, Isaacs FJ, Cantor CR, Collins JJ (2010). "Tracking, tuning, and terminating microbial physiology using synthetic riboregulators". Proc Natl Acad Sci U S A. 107 (36): 15898–903. Bibcode:2010PNAS..10715898C. doi:10.1073/pnas.1009747107. PMC 2936621. PMID 20713708.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Chan CT, Lee JW, Cameron DE, Bashor CJ, Collins JJ (2016). "'Deadman' and 'Passcode' microbial kill switches for bacterial containment". Nat Chem Biol. 12 (2): 82–6. doi:10.1038/nchembio.1979. PMC 4718764. PMID 26641934.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Lu TK, Collins JJ (2007). "Dispersing biofilms with engineered enzymatic bacteriophage". Proc Natl Acad Sci U S A. 104 (27): 11197–202. Bibcode:2007PNAS..10411197L. doi:10.1073/pnas.0704624104. PMC 1899193. PMID 17592147.
Lu TK, Collins JJ (2009). "Engineered bacteriophage targeting gene networks as adjuvants for antibiotic therapy". Proc Natl Acad Sci U S A. 106 (12): 4629–34. Bibcode:2009PNAS..106.4629L. doi:10.1073/pnas.0800442106. PMC 2649960. PMID 19255432.
Callura JM, Cantor CR, Collins JJ (2012). "Genetic switchboard for synthetic biology applications". Proc Natl Acad Sci U S A. 109 (15): 5850–5. Bibcode:2012PNAS..109.5850C. doi:10.1073/pnas.1203808109. PMC 3326468. PMID 22454498.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Deans TL, Cantor CR, Collins JJ (2007). "A tunable genetic switch based on RNAi and repressor proteins for regulating gene expression in mammalian cells". Cell. 130 (2): 363–72. doi:10.1016/j.cell.2007.05.045. PMID 17662949. S2CID 7960766.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Cho JH, Collins JJ, Wong WW (2018). "Universal Chimeric Antigen Receptors for Multiplexed and Logical Control of T Cell Responses". Cell. 173 (6): 1426–1438.e11. doi:10.1016/j.cell.2018.03.038. PMC 5984158. PMID 29706540.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Cho JH, Okuma A, Sofjan K, Lee S, Collins JJ, Wong WW (2021). "Engineering advanced logic and distributed computing in human CAR immune cells". Nat Commun. 12 (1): 792. Bibcode:2021NatCo..12..792C. doi:10.1038/s41467-021-21078-7. PMC 7862674. PMID 33542232.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Pardee K, Green AA, Ferrante T, Cameron DE, DaleyKeyser A, Yin P; et al. (2014). "Paper-based synthetic gene networks". Cell. 159 (4): 940–54. doi:10.1016/j.cell.2014.10.004. PMC 4243060. PMID 25417167.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Pardee K, Green AA, Takahashi MK, Braff D, Lambert G, Lee JW; et al. (2016). "Rapid, Low-Cost Detection of Zika Virus Using Programmable Biomolecular Components". Cell. 165 (5): 1255–1266. doi:10.1016/j.cell.2016.04.059. hdl:1721.1/109241. PMID 27160350. S2CID 3278532.{{cite journal}}: CS1 maint: multiple names: authors list (link)
de Puig H, Lee RA, Najjar D, Tan X, Soeknsen LR, Angenent-Mari NM; et al. (2021). "Minimally instrumented SHERLOCK (miSHERLOCK) for CRISPR-based point-of-care diagnosis of SARS-CoV-2 and emerging variants". Sci Adv. 7 (32). Bibcode:2021SciA....7.2944D. doi:10.1126/sciadv.abh2944. PMC 8346217. PMID 34362739.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Karlikow M, da Silva SJR, Guo Y, Cicek S, Krokovsky L, Homme P; et al. (2022). "Field validation of the performance of paper-based tests for the detection of the Zika and chikungunya viruses in serum samples". Nat Biomed Eng. 6 (3): 246–256. doi:10.1038/s41551-022-00850-0. PMC 8940623. PMID 35256758.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Nguyen PQ, Soenksen LR, Donghia NM, Angenent-Mari NM, de Puig H, Huang A; et al. (2021). "Wearable materials with embedded synthetic biology sensors for biomolecule detection". Nat Biotechnol. 39 (11): 1366–1374. doi:10.1038/s41587-021-00950-3. hdl:1721.1/131278. PMID 34183860. S2CID 235673261.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Pardee K, Slomovic S, Nguyen PQ, Lee JW, Donghia N, Burrill D; et al. (2016). "Portable, On-Demand Biomolecular Manufacturing". Cell. 167 (1): 248–259.e12. doi:10.1016/j.cell.2016.09.013. hdl:1721.1/111574. PMID 27662092. S2CID 8481521.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Warren L, Manos PD, Ahfeldt T, Loh YH, Li H, Lau F; et al. (2010). "Highly efficient reprogramming to pluripotency and directed differentiation of human cells with synthetic modified mRNA". Cell Stem Cell. 7 (5): 618–30. doi:10.1016/j.stem.2010.08.012. PMC 3656821. PMID 20888316.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Hasty J, Pradines J, Dolnik M, Collins JJ (2000). "Noise-based switches and amplifiers for gene expression". Proc Natl Acad Sci U S A. 97 (5): 2075–80. arXiv:physics/0003105. Bibcode:2000PNAS...97.2075H. doi:10.1073/pnas.040411297. PMC 15756. PMID 10681449.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Isaacs FJ, Hasty J, Cantor CR, Collins JJ (2003). "Prediction and measurement of an autoregulatory genetic module". Proc Natl Acad Sci U S A. 100 (13): 7714–9. Bibcode:2003PNAS..100.7714I. doi:10.1073/pnas.1332628100. PMC 164653. PMID 12808135.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Blake WJ, KAErn M, Cantor CR, Collins JJ (2003). "Noise in eukaryotic gene expression". Nature. 422 (6932): 633–7. Bibcode:2003Natur.422..633B. doi:10.1038/nature01546. PMID 12687005. S2CID 4347106.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Blake WJ, Balázsi G, Kohanski MA, Isaacs FJ, Murphy KF, Kuang Y; et al. (2006). "Phenotypic consequences of promoter-mediated transcriptional noise". Mol Cell. 24 (6): 853–65. doi:10.1016/j.molcel.2006.11.003. PMID 17189188.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Ellis T, Wang X, Collins JJ (2009). "Diversity-based, model-guided construction of synthetic gene networks with predicted functions". Nat Biotechnol. 27 (5): 465–71. doi:10.1038/nbt.1536. PMC 2680460. PMID 19377462.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Guido NJ, Wang X, Adalsteinsson D, McMillen D, Hasty J, Cantor CR; et al. (2006). "A bottom-up approach to gene regulation". Nature. 439 (7078): 856–60. Bibcode:2006Natur.439..856G. doi:10.1038/nature04473. PMID 16482159. S2CID 4418558.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Yeung MK, Tegnér J, Collins JJ (2002). "Reverse engineering gene networks using singular value decomposition and robust regression". Proc Natl Acad Sci U S A. 99 (9): 6163–8. Bibcode:2002PNAS...99.6163Y. doi:10.1073/pnas.092576199. PMC 122920. PMID 11983907.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Gardner, TS; di Bernardo D; Lorenz D; Collins JJ (July 4, 2003). "Inferring genetic networks and identifying compound of action via expression profiling". Science. 301 (5629): 102–105. doi:10.1126/science.1081900. PMID 12843395. S2CID 8356492.
Kohanski, MA; Dwyer DJ; Hayete B; Lawrence CA; Collins JJ. (2007). "A common mechanism of cellular death induced by bactericidal antibiotics". Cell. 130 (5): 797–810. doi:10.1016/j.cell.2007.06.049. PMID 17803904. S2CID 1103795.
Kohanski MA, Dwyer DJ, Wierzbowski J, Cottarel G, Collins JJ (2008). "Mistranslation of membrane proteins and two-component system activation trigger antibiotic-mediated cell death". Cell. 135 (4): 679–90. doi:10.1016/j.cell.2008.09.038. PMC 2684502. PMID 19013277.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Allison KR, Brynildsen MP, Collins JJ (2011). "Metabolite-enabled eradication of bacterial persisters by aminoglycosides". Nature. 473 (7346): 216–20. Bibcode:2011Natur.473..216A. doi:10.1038/nature10069. PMC 3145328. PMID 21562562.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Kohanski, MA; DePristo MA; Collins JJ. (2010). "Sublethal antibiotic treatment leads to multidrug resistance via radical-induced mutagenesis". Molecular Cell. 37 (3): 311–320. doi:10.1016/j.molcel.2010.01.003. PMC 2840266. PMID 20159551.
Lee, HH; Molla MN; Cantor CR; Collins JJ. (2010). "Bacterial charity work leads to population-wide resistance". Nature. 467 (7311): 82–85. Bibcode:2010Natur.467...82L. doi:10.1038/nature09354. PMC 2936489. PMID 20811456.
Stokes, Jonathan M.; Yang, Kevin; Swanson, Kyle; Jin, Wengong; Cubillos-Ruiz, Andres; Donghia, Nina M.; MacNair, Craig R.; French, Shawn; Carfrae, Lindsey A.; Bloom-Ackermann, Zohar; Tran, Victoria M. (February 20, 2020). "A Deep Learning Approach to Antibiotic Discovery". Cell. 180 (4): 688–702.e13. doi:10.1016/j.cell.2020.01.021. ISSN 1097-4172. PMC 8349178. PMID 32084340.
Collins JJ (1994). "Random walking during quiet standing". Phys Rev Lett. 73 (5): 764–767. Bibcode:1994PhRvL..73..764C. doi:10.1103/PhysRevLett.73.764. PMID 10057531.
Collins JJ, Chow CC, Imhoff TT (1995). "Stochastic resonance without tuning". Nature. 376 (6537): 236–8. Bibcode:1995Natur.376..236C. doi:10.1038/376236a0. PMID 7617033. S2CID 4314968.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Collins JJ, Imhoff TT, Grigg P (1996). "Noise-enhanced information transmission in rat SA1 cutaneous mechanoreceptors via aperiodic stochastic resonance". J Neurophysiol. 76 (1): 642–5. doi:10.1152/jn.1996.76.1.642. PMID 8836253.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Collins JJ, Imhoff TT, Grigg P (1996). "Noise-enhanced tactile sensation". Nature. 383 (6603): 770. Bibcode:1996Natur.383..770C. doi:10.1038/383770a0. PMID 8893000. S2CID 3660648.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Priplata, A; Niemi J; Harry J; Lipsitz LA; Collins JJ (October 4, 2003). "Vibrating insoles and balance control in elderly people". The Lancet. 362 (9390): 1123–1124. doi:10.1016/S0140-6736(03)14470-4. PMID 14550702. S2CID 33216209.

ncbi.nlm.nih.gov

Kobayashi H, Kaern M, Araki M, Chung K, Gardner TS, Cantor CR; et al. (2004). "Programmable cells: interfacing natural and engineered gene networks". Proc Natl Acad Sci U S A. 101 (22): 8414–9. Bibcode:2004PNAS..101.8414K. doi:10.1073/pnas.0402940101. PMC 420408. PMID 15159530.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Mao N, Cubillos-Ruiz A, Cameron DE, Collins JJ (2018). "Probiotic strains detect and suppress cholera in mice". Sci Transl Med. 10 (445). doi:10.1126/scitranslmed.aao2586. PMC 7821980. PMID 29899022.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Green AA, Silver PA, Collins JJ, Yin P (2014). "Toehold switches: de-novo-designed regulators of gene expression". Cell. 159 (4): 925–39. doi:10.1016/j.cell.2014.10.002. PMC 4265554. PMID 25417166.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Green AA, Kim J, Ma D, Silver PA, Collins JJ, Yin P (2017). "Complex cellular logic computation using ribocomputing devices". Nature. 548 (7665): 117–121. Bibcode:2017Natur.548..117G. doi:10.1038/nature23271. PMC 6078203. PMID 28746304.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Angenent-Mari NM, Garruss AS, Soenksen LR, Church G, Collins JJ (2020). "A deep learning approach to programmable RNA switches". Nat Commun. 11 (1): 5057. Bibcode:2020NatCo..11.5057A. doi:10.1038/s41467-020-18677-1. PMC 7541447. PMID 33028812.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Gayet RV, Ilia K, Razavi S, Tippens ND, Lalwani MA, Zhang K; et al. (2023). "Autocatalytic base editing for RNA-responsive translational control". Nat Commun. 14 (1): 1339. Bibcode:2023NatCo..14.1339G. doi:10.1038/s41467-023-36851-z. PMC 10008589. PMID 36906659.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Friedland AE, Lu TK, Wang X, Shi D, Church G, Collins JJ (2009). "Synthetic gene networks that count". Science. 324 (5931): 1199–202. Bibcode:2009Sci...324.1199F. doi:10.1126/science.1172005. PMC 2690711. PMID 19478183.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Callura JM, Dwyer DJ, Isaacs FJ, Cantor CR, Collins JJ (2010). "Tracking, tuning, and terminating microbial physiology using synthetic riboregulators". Proc Natl Acad Sci U S A. 107 (36): 15898–903. Bibcode:2010PNAS..10715898C. doi:10.1073/pnas.1009747107. PMC 2936621. PMID 20713708.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Chan CT, Lee JW, Cameron DE, Bashor CJ, Collins JJ (2016). "'Deadman' and 'Passcode' microbial kill switches for bacterial containment". Nat Chem Biol. 12 (2): 82–6. doi:10.1038/nchembio.1979. PMC 4718764. PMID 26641934.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Lu TK, Collins JJ (2007). "Dispersing biofilms with engineered enzymatic bacteriophage". Proc Natl Acad Sci U S A. 104 (27): 11197–202. Bibcode:2007PNAS..10411197L. doi:10.1073/pnas.0704624104. PMC 1899193. PMID 17592147.
Lu TK, Collins JJ (2009). "Engineered bacteriophage targeting gene networks as adjuvants for antibiotic therapy". Proc Natl Acad Sci U S A. 106 (12): 4629–34. Bibcode:2009PNAS..106.4629L. doi:10.1073/pnas.0800442106. PMC 2649960. PMID 19255432.
Callura JM, Cantor CR, Collins JJ (2012). "Genetic switchboard for synthetic biology applications". Proc Natl Acad Sci U S A. 109 (15): 5850–5. Bibcode:2012PNAS..109.5850C. doi:10.1073/pnas.1203808109. PMC 3326468. PMID 22454498.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Cho JH, Collins JJ, Wong WW (2018). "Universal Chimeric Antigen Receptors for Multiplexed and Logical Control of T Cell Responses". Cell. 173 (6): 1426–1438.e11. doi:10.1016/j.cell.2018.03.038. PMC 5984158. PMID 29706540.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Cho JH, Okuma A, Sofjan K, Lee S, Collins JJ, Wong WW (2021). "Engineering advanced logic and distributed computing in human CAR immune cells". Nat Commun. 12 (1): 792. Bibcode:2021NatCo..12..792C. doi:10.1038/s41467-021-21078-7. PMC 7862674. PMID 33542232.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Pardee K, Green AA, Ferrante T, Cameron DE, DaleyKeyser A, Yin P; et al. (2014). "Paper-based synthetic gene networks". Cell. 159 (4): 940–54. doi:10.1016/j.cell.2014.10.004. PMC 4243060. PMID 25417167.{{cite journal}}: CS1 maint: multiple names: authors list (link)
de Puig H, Lee RA, Najjar D, Tan X, Soeknsen LR, Angenent-Mari NM; et al. (2021). "Minimally instrumented SHERLOCK (miSHERLOCK) for CRISPR-based point-of-care diagnosis of SARS-CoV-2 and emerging variants". Sci Adv. 7 (32). Bibcode:2021SciA....7.2944D. doi:10.1126/sciadv.abh2944. PMC 8346217. PMID 34362739.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Karlikow M, da Silva SJR, Guo Y, Cicek S, Krokovsky L, Homme P; et al. (2022). "Field validation of the performance of paper-based tests for the detection of the Zika and chikungunya viruses in serum samples". Nat Biomed Eng. 6 (3): 246–256. doi:10.1038/s41551-022-00850-0. PMC 8940623. PMID 35256758.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Warren L, Manos PD, Ahfeldt T, Loh YH, Li H, Lau F; et al. (2010). "Highly efficient reprogramming to pluripotency and directed differentiation of human cells with synthetic modified mRNA". Cell Stem Cell. 7 (5): 618–30. doi:10.1016/j.stem.2010.08.012. PMC 3656821. PMID 20888316.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Hasty J, Pradines J, Dolnik M, Collins JJ (2000). "Noise-based switches and amplifiers for gene expression". Proc Natl Acad Sci U S A. 97 (5): 2075–80. arXiv:physics/0003105. Bibcode:2000PNAS...97.2075H. doi:10.1073/pnas.040411297. PMC 15756. PMID 10681449.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Isaacs FJ, Hasty J, Cantor CR, Collins JJ (2003). "Prediction and measurement of an autoregulatory genetic module". Proc Natl Acad Sci U S A. 100 (13): 7714–9. Bibcode:2003PNAS..100.7714I. doi:10.1073/pnas.1332628100. PMC 164653. PMID 12808135.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Ellis T, Wang X, Collins JJ (2009). "Diversity-based, model-guided construction of synthetic gene networks with predicted functions". Nat Biotechnol. 27 (5): 465–71. doi:10.1038/nbt.1536. PMC 2680460. PMID 19377462.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Yeung MK, Tegnér J, Collins JJ (2002). "Reverse engineering gene networks using singular value decomposition and robust regression". Proc Natl Acad Sci U S A. 99 (9): 6163–8. Bibcode:2002PNAS...99.6163Y. doi:10.1073/pnas.092576199. PMC 122920. PMID 11983907.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Kohanski MA, Dwyer DJ, Wierzbowski J, Cottarel G, Collins JJ (2008). "Mistranslation of membrane proteins and two-component system activation trigger antibiotic-mediated cell death". Cell. 135 (4): 679–90. doi:10.1016/j.cell.2008.09.038. PMC 2684502. PMID 19013277.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Allison KR, Brynildsen MP, Collins JJ (2011). "Metabolite-enabled eradication of bacterial persisters by aminoglycosides". Nature. 473 (7346): 216–20. Bibcode:2011Natur.473..216A. doi:10.1038/nature10069. PMC 3145328. PMID 21562562.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Kohanski, MA; DePristo MA; Collins JJ. (2010). "Sublethal antibiotic treatment leads to multidrug resistance via radical-induced mutagenesis". Molecular Cell. 37 (3): 311–320. doi:10.1016/j.molcel.2010.01.003. PMC 2840266. PMID 20159551.
Lee, HH; Molla MN; Cantor CR; Collins JJ. (2010). "Bacterial charity work leads to population-wide resistance". Nature. 467 (7311): 82–85. Bibcode:2010Natur.467...82L. doi:10.1038/nature09354. PMC 2936489. PMID 20811456.
Stokes, Jonathan M.; Yang, Kevin; Swanson, Kyle; Jin, Wengong; Cubillos-Ruiz, Andres; Donghia, Nina M.; MacNair, Craig R.; French, Shawn; Carfrae, Lindsey A.; Bloom-Ackermann, Zohar; Tran, Victoria M. (February 20, 2020). "A Deep Learning Approach to Antibiotic Discovery". Cell. 180 (4): 688–702.e13. doi:10.1016/j.cell.2020.01.021. ISSN 1097-4172. PMC 8349178. PMID 32084340.

ox.ac.uk

balliol.ox.ac.uk

"Dickson Prize in Medicine awarded to Balliol alumnus". Balliol College, Oxford. University of Oxford. October 28, 2020. Retrieved September 4, 2023.

solo.bodleian.ox.ac.uk

"Dissertations/Thesis: Joint mechanics - modelling of the lower limb". Oxford Libraries Information System. University of Oxford. Retrieved December 19, 2023.

penguinrandomhouse.com

Brady 2012, p. 184. Brady, Diane (2012). Fraternity. Spiegel & Grau (published January 3, 2012). ISBN 978-0385524742.

sciam.com

"Scientific American 50: SA 50 Winners and Contributors". Scientific American. November 21, 2005. Retrieved April 15, 2007.

semanticscholar.org

api.semanticscholar.org

Gardner, TS; Cantor CR; Collins JJ (January 20, 2000). "Construction of a genetic toggle switch in Escherichia coli". Nature. 403 (6767): 339–342. Bibcode:2000Natur.403..339G. doi:10.1038/35002131. PMID 10659857. S2CID 345059.
Elowitz MB, Leibler S (2000). "A synthetic oscillatory network of transcriptional regulators". Nature. 403 (6767): 335–8. Bibcode:2000Natur.403..335E. doi:10.1038/35002125. PMID 10659856. S2CID 41632754.
Cubillos-Ruiz A, Alcantar MA, Donghia NM, Cárdenas P, Avila-Pacheco J, Collins JJ (2022). "An engineered live biotherapeutic for the prevention of antibiotic-induced dysbiosis". Nat Biomed Eng. 6 (7): 910–921. doi:10.1038/s41551-022-00871-9. PMID 35411114. S2CID 248100868.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Isaacs, FJ; Dwyer, DJ; Ding, C; Pervouchine, DD; Cantor, CR; Collins, JJ (2004). "Engineered riboregulators enable post-transcriptional control of gene expression". Nat Biotechnol. 22 (7): 823–4 2004. doi:10.1038/nbt986. PMID 15208640. S2CID 7289450.
Zhao EM, Mao AS, de Puig H, Zhang K, Tippens ND, Tan X; et al. (2022). "RNA-responsive elements for eukaryotic translational control". Nat Biotechnol. 40 (4): 539–545. doi:10.1038/s41587-021-01068-2. PMID 34711989. S2CID 240153815.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Deans TL, Cantor CR, Collins JJ (2007). "A tunable genetic switch based on RNAi and repressor proteins for regulating gene expression in mammalian cells". Cell. 130 (2): 363–72. doi:10.1016/j.cell.2007.05.045. PMID 17662949. S2CID 7960766.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Pardee K, Green AA, Takahashi MK, Braff D, Lambert G, Lee JW; et al. (2016). "Rapid, Low-Cost Detection of Zika Virus Using Programmable Biomolecular Components". Cell. 165 (5): 1255–1266. doi:10.1016/j.cell.2016.04.059. hdl:1721.1/109241. PMID 27160350. S2CID 3278532.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Nguyen PQ, Soenksen LR, Donghia NM, Angenent-Mari NM, de Puig H, Huang A; et al. (2021). "Wearable materials with embedded synthetic biology sensors for biomolecule detection". Nat Biotechnol. 39 (11): 1366–1374. doi:10.1038/s41587-021-00950-3. hdl:1721.1/131278. PMID 34183860. S2CID 235673261.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Pardee K, Slomovic S, Nguyen PQ, Lee JW, Donghia N, Burrill D; et al. (2016). "Portable, On-Demand Biomolecular Manufacturing". Cell. 167 (1): 248–259.e12. doi:10.1016/j.cell.2016.09.013. hdl:1721.1/111574. PMID 27662092. S2CID 8481521.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Blake WJ, KAErn M, Cantor CR, Collins JJ (2003). "Noise in eukaryotic gene expression". Nature. 422 (6932): 633–7. Bibcode:2003Natur.422..633B. doi:10.1038/nature01546. PMID 12687005. S2CID 4347106.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Guido NJ, Wang X, Adalsteinsson D, McMillen D, Hasty J, Cantor CR; et al. (2006). "A bottom-up approach to gene regulation". Nature. 439 (7078): 856–60. Bibcode:2006Natur.439..856G. doi:10.1038/nature04473. PMID 16482159. S2CID 4418558.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Gardner, TS; di Bernardo D; Lorenz D; Collins JJ (July 4, 2003). "Inferring genetic networks and identifying compound of action via expression profiling". Science. 301 (5629): 102–105. doi:10.1126/science.1081900. PMID 12843395. S2CID 8356492.
Kohanski, MA; Dwyer DJ; Hayete B; Lawrence CA; Collins JJ. (2007). "A common mechanism of cellular death induced by bactericidal antibiotics". Cell. 130 (5): 797–810. doi:10.1016/j.cell.2007.06.049. PMID 17803904. S2CID 1103795.
Collins JJ, Chow CC, Imhoff TT (1995). "Stochastic resonance without tuning". Nature. 376 (6537): 236–8. Bibcode:1995Natur.376..236C. doi:10.1038/376236a0. PMID 7617033. S2CID 4314968.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Collins JJ, Imhoff TT, Grigg P (1996). "Noise-enhanced tactile sensation". Nature. 383 (6603): 770. Bibcode:1996Natur.383..770C. doi:10.1038/383770a0. PMID 8893000. S2CID 3660648.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Priplata, A; Niemi J; Harry J; Lipsitz LA; Collins JJ (October 4, 2003). "Vibrating insoles and balance control in elderly people". The Lancet. 362 (9390): 1123–1124. doi:10.1016/S0140-6736(03)14470-4. PMID 14550702. S2CID 33216209.

technologyreview.com

"1999 Young Innovator, James Collins". Technology Review. November–December 1999. Retrieved April 15, 2007.

the-scientist.com

Hopkin, Karen (May 1, 2008). "Switched on Science". The Scientist Magazine. Retrieved August 17, 2024.

theguardian.com

Tucker, Ian (May 21, 2011). "James Collins: A spoonful of sugar helps the medicine go down". The Guardian. ISSN 0261-3077. Retrieved April 22, 2024.

web.archive.org

Reardon, Michael (Winter 2007). "The Profile: James J. Collins Jr. '87". Holy Cross Magazine. Vol. 41, no. 1. College of the Holy Cross. p. 80. Archived from the original on August 22, 2016. Retrieved April 15, 2007.
"People". J-Clinic. Archived from the original on November 30, 2021. Retrieved November 13, 2020.
"MacArthur Fellows, October 2003". John D. and Catherine T. MacArthur Foundation. Archived from the original on October 16, 2007. Retrieved April 15, 2007.
Brick, Tricia (Spring 2006). "Genius at Work". Bostonia. pp. 20–25. Archived from the original on October 19, 2012. Retrieved June 12, 2009.
"Duke Senior Launches Himself Towards Big Regwards". Duke Today. October 19, 2023. Archived from the original on June 25, 2020. Retrieved September 29, 2024. {{cite web}}: Check |url= value (help)

worldcat.org

search.worldcat.org

Stokes, Jonathan M.; Yang, Kevin; Swanson, Kyle; Jin, Wengong; Cubillos-Ruiz, Andres; Donghia, Nina M.; MacNair, Craig R.; French, Shawn; Carfrae, Lindsey A.; Bloom-Ackermann, Zohar; Tran, Victoria M. (February 20, 2020). "A Deep Learning Approach to Antibiotic Discovery". Cell. 180 (4): 688–702.e13. doi:10.1016/j.cell.2020.01.021. ISSN 1097-4172. PMC 8349178. PMID 32084340.
Tucker, Ian (May 21, 2011). "James Collins: A spoonful of sugar helps the medicine go down". The Guardian. ISSN 0261-3077. Retrieved April 22, 2024.

xconomy.com

Kutz, Erin (October 4, 2010). "ModeRNA, Stealth Startup Backed By Flagship, Unveils New Way to Make Stem Cells". Xconomy, Inc.