Ka/Ks ratio (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Ka/Ks ratio" in English language version.

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doi.org

  • Yang Z, Bielawski JP (December 2000). "Statistical methods for detecting molecular adaptation". Trends in Ecology & Evolution. 15 (12): 496–503. CiteSeerX 10.1.1.19.6537. doi:10.1016/S0169-5347(00)01994-7. PMC 7134603. PMID 11114436.
  • Kosakovsky Pond SL, Frost SD (May 2005). "Not so different after all: a comparison of methods for detecting amino acid sites under selection". Molecular Biology and Evolution. 22 (5): 1208–1222. doi:10.1093/molbev/msi105. PMID 15703242.
  • Hurst LD (September 2002). "The Ka/Ks ratio: diagnosing the form of sequence evolution". Trends in Genetics. 18 (9): 486–487. doi:10.1016/S0168-9525(02)02722-1. PMID 12175810.
  • Shen X, Song S, Li C, Zhang J (June 2022). "Synonymous mutations in representative yeast genes are mostly strongly non-neutral". Nature. 606 (7915): 725–731. Bibcode:2022Natur.606..725S. doi:10.1038/s41586-022-04823-w. PMC 9650438. PMID 35676473. S2CID 249520936.
  • Rocha EP, Smith JM, Hurst LD, Holden MT, Cooper JE, Smith NH, Feil EJ (March 2006). "Comparisons of dN/dS are time dependent for closely related bacterial genomes". Journal of Theoretical Biology. 239 (2): 226–235. Bibcode:2006JThBi.239..226R. doi:10.1016/j.jtbi.2005.08.037. PMID 16239014.
  • Kryazhimskiy S, Plotkin JB (December 2008). "The population genetics of dN/dS". PLOS Genetics. 4 (12): e1000304. doi:10.1371/journal.pgen.1000304. PMC 2596312. PMID 19081788.
  • Peterson GI, Masel J (November 2009). "Quantitative prediction of molecular clock and ka/ks at short timescales". Molecular Biology and Evolution. 26 (11): 2595–2603. doi:10.1093/molbev/msp175. PMC 2912466. PMID 19661199.
  • Mugal CF, Wolf JB, Kaj I (January 2014). "Why time matters: codon evolution and the temporal dynamics of dN/dS". Molecular Biology and Evolution. 31 (1): 212–231. doi:10.1093/molbev/mst192. PMC 3879453. PMID 24129904.

harvard.edu

ui.adsabs.harvard.edu

nih.gov

pubmed.ncbi.nlm.nih.gov

  • Yang Z, Bielawski JP (December 2000). "Statistical methods for detecting molecular adaptation". Trends in Ecology & Evolution. 15 (12): 496–503. CiteSeerX 10.1.1.19.6537. doi:10.1016/S0169-5347(00)01994-7. PMC 7134603. PMID 11114436.
  • Kosakovsky Pond SL, Frost SD (May 2005). "Not so different after all: a comparison of methods for detecting amino acid sites under selection". Molecular Biology and Evolution. 22 (5): 1208–1222. doi:10.1093/molbev/msi105. PMID 15703242.
  • Hurst LD (September 2002). "The Ka/Ks ratio: diagnosing the form of sequence evolution". Trends in Genetics. 18 (9): 486–487. doi:10.1016/S0168-9525(02)02722-1. PMID 12175810.
  • Shen X, Song S, Li C, Zhang J (June 2022). "Synonymous mutations in representative yeast genes are mostly strongly non-neutral". Nature. 606 (7915): 725–731. Bibcode:2022Natur.606..725S. doi:10.1038/s41586-022-04823-w. PMC 9650438. PMID 35676473. S2CID 249520936.
  • Rocha EP, Smith JM, Hurst LD, Holden MT, Cooper JE, Smith NH, Feil EJ (March 2006). "Comparisons of dN/dS are time dependent for closely related bacterial genomes". Journal of Theoretical Biology. 239 (2): 226–235. Bibcode:2006JThBi.239..226R. doi:10.1016/j.jtbi.2005.08.037. PMID 16239014.
  • Kryazhimskiy S, Plotkin JB (December 2008). "The population genetics of dN/dS". PLOS Genetics. 4 (12): e1000304. doi:10.1371/journal.pgen.1000304. PMC 2596312. PMID 19081788.
  • Peterson GI, Masel J (November 2009). "Quantitative prediction of molecular clock and ka/ks at short timescales". Molecular Biology and Evolution. 26 (11): 2595–2603. doi:10.1093/molbev/msp175. PMC 2912466. PMID 19661199.
  • Mugal CF, Wolf JB, Kaj I (January 2014). "Why time matters: codon evolution and the temporal dynamics of dN/dS". Molecular Biology and Evolution. 31 (1): 212–231. doi:10.1093/molbev/mst192. PMC 3879453. PMID 24129904.

ncbi.nlm.nih.gov

  • Yang Z, Bielawski JP (December 2000). "Statistical methods for detecting molecular adaptation". Trends in Ecology & Evolution. 15 (12): 496–503. CiteSeerX 10.1.1.19.6537. doi:10.1016/S0169-5347(00)01994-7. PMC 7134603. PMID 11114436.
  • Shen X, Song S, Li C, Zhang J (June 2022). "Synonymous mutations in representative yeast genes are mostly strongly non-neutral". Nature. 606 (7915): 725–731. Bibcode:2022Natur.606..725S. doi:10.1038/s41586-022-04823-w. PMC 9650438. PMID 35676473. S2CID 249520936.
  • Kryazhimskiy S, Plotkin JB (December 2008). "The population genetics of dN/dS". PLOS Genetics. 4 (12): e1000304. doi:10.1371/journal.pgen.1000304. PMC 2596312. PMID 19081788.
  • Peterson GI, Masel J (November 2009). "Quantitative prediction of molecular clock and ka/ks at short timescales". Molecular Biology and Evolution. 26 (11): 2595–2603. doi:10.1093/molbev/msp175. PMC 2912466. PMID 19661199.
  • Mugal CF, Wolf JB, Kaj I (January 2014). "Why time matters: codon evolution and the temporal dynamics of dN/dS". Molecular Biology and Evolution. 31 (1): 212–231. doi:10.1093/molbev/mst192. PMC 3879453. PMID 24129904.

psu.edu

citeseerx.ist.psu.edu

  • Yang Z, Bielawski JP (December 2000). "Statistical methods for detecting molecular adaptation". Trends in Ecology & Evolution. 15 (12): 496–503. CiteSeerX 10.1.1.19.6537. doi:10.1016/S0169-5347(00)01994-7. PMC 7134603. PMID 11114436.

semanticscholar.org

api.semanticscholar.org