LTR retrotransposon (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "LTR retrotransposon" in English language version.

refsWebsite

Global rank English rank

51nih.gov

4^th place

36doi.org

2^nd place

10semanticscholar.org

11^th place

8^th place

10worldcat.org

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4harvard.edu

18^th place

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2handle.net

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1nature.com

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1osf.io

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4,975^th place

1geneticeducation.co.in

low place

1psu.edu

207^th place

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1biorxiv.org

5,061^st place

5,698^th place

biorxiv.org

Gao, Dongying; Li, Yupeng; Abernathy, Brian; Jackson, Scott (2014-10-29). "Landscape and evolutionary dynamics of terminal-repeat retrotransposons in miniature (TRIMs) in 48 whole plant genomes" (PDF). doi:10.1101/010850. S2CID 10238180. Retrieved 2020-10-03. {{cite journal}}: Cite journal requires |journal= (help)

doi.org

Grohme, Markus Alexander; Schloissnig, Siegfried; Rozanski, Andrei; Pippel, Martin; Young, George Robert; Winkler, Sylke; Brandl, Holger; Henry, Ian; Dahl, Andreas; Powell, Sean; Hiller, Michael; Myers, Eugene; Rink, Jochen Christian (January 2018). "The genome of Schmidtea mediterranea and the evolution of core cellular mechanisms". Nature. 554 (7690): 56–61. doi:10.1038/nature25473. hdl:21.11116/0000-0003-F5F3-6. ISSN 1476-4687.
Baucom, RS; Estill, JC; Chaparro, C; Upshaw, N; Jogi, A; Deragon, JM; Westerman, RP; Sanmiguel, PJ; Bennetzen, JL (November 2009). "Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome". PLOS Genetics. 5 (11): e1000732. doi:10.1371/journal.pgen.1000732. PMC 2774510. PMID 19936065.
McCarthy EM, McDonald JF (2004). "Long terminal repeat retrotransposons of Mus musculus". Genome Biol. 5 (3): R14. doi:10.1186/gb-2004-5-3-r14. PMC 395764. PMID 15003117.
Copeland CS, Mann VH, Morales ME, Kalinna BH, Brindley PJ (2005). "The Sinbad retrotransposon from the genome of the human blood fluke, Schistosoma mansoni, and the distribution of related Pao-like elements". BMC Evol. Biol. 5 (1): 20. doi:10.1186/1471-2148-5-20. PMC 554778. PMID 15725362.
Wicker T, Sabot F, Hua-Van A, et al. (December 2007). "A unified classification system for eukaryotic transposable elements". Nat. Rev. Genet. 8 (12): 973–82. doi:10.1038/nrg2165. PMID 17984973. S2CID 32132898.
Sandmeyer, Suzanne B; Clemens, Kristina A (2010). "Function of a retrotransposon nucleocapsid protein". RNA Biology. 7 (6): 642–654. doi:10.4161/rna.7.6.14117. ISSN 1547-6286. PMC 3073325. PMID 21189452.
Wicker, Thomas; Sabot, François; Hua-Van, Aurélie; Bennetzen, Jeffrey L.; Capy, Pierre; Chalhoub, Boulos; Flavell, Andrew; Leroy, Philippe; Morgante, Michele (December 2007). "A unified classification system for eukaryotic transposable elements". Nature Reviews. Genetics. 8 (12): 973–982. doi:10.1038/nrg2165. ISSN 1471-0064. PMID 17984973. S2CID 32132898.
GAO, XIANG; HAVECKER, ERICKA R.; BARANOV, PAVEL V.; ATKINS, JOHN F.; VOYTAS, DANIEL F. (December 2003). "Translational recoding signals between gag and pol in diverse LTR retrotransposons". RNA. 9 (12): 1422–1430. doi:10.1261/rna.5105503. ISSN 1355-8382. PMC 1370496. PMID 14623998.
Wicker, T; Keller, B (July 2007). "Genome-wide comparative analysis of copia retrotransposons in Triticeae, rice, and Arabidopsis reveals conserved ancient evolutionary lineages and distinct dynamics of individual copia families". Genome Research. 17 (7): 1072–81. doi:10.1101/gr.6214107. PMC 1899118. PMID 17556529.
Llorens, C; Muñoz-Pomer, A; Bernad, L; Botella, H; Moya, A (2 November 2009). "Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees". Biology Direct. 4: 41. doi:10.1186/1745-6150-4-41. PMC 2774666. PMID 19883502.
Laten, HM; Majumdar, A; Gaucher, EA (9 June 1998). "SIRE-1, a copia/Ty1-like retroelement from soybean, encodes a retroviral envelope-like protein". Proceedings of the National Academy of Sciences of the United States of America. 95 (12): 6897–902. Bibcode:1998PNAS...95.6897L. doi:10.1073/pnas.95.12.6897. PMC 22677. PMID 9618510.
Bousios, A; Kourmpetis, YA; Pavlidis, P; Minga, E; Tsaftaris, A; Darzentas, N (February 2012). "The turbulent life of Sirevirus retrotransposons and the evolution of the maize genome: more than ten thousand elements tell the story". The Plant Journal. 69 (3): 475–88. doi:10.1111/j.1365-313x.2011.04806.x. PMID 21967390.
Kapitonov, VV; Jurka, J (1999). "Molecular paleontology of transposable elements from Arabidopsis thaliana". Genetica. 107 (1–3): 27–37. doi:10.1023/a:1004030922447. PMID 10952195. S2CID 27249664.
Weber, B; Wenke, T; Frömmel, U; Schmidt, T; Heitkam, T (February 2010). "The Ty1-copia families SALIRE and Cotzilla populating the Beta vulgaris genome show remarkable differences in abundance, chromosomal distribution, and age". Chromosome Research. 18 (2): 247–63. doi:10.1007/s10577-009-9104-4. PMID 20039119. S2CID 24883110.
Miguel, C; Simões, M; Oliveira, MM; Rocheta, M (November 2008). "Envelope-like retrotransposons in the plant kingdom: evidence of their presence in gymnosperms (Pinus pinaster)". Journal of Molecular Evolution. 67 (5): 517–25. Bibcode:2008JMolE..67..517M. doi:10.1007/s00239-008-9168-3. PMID 18925379. S2CID 28629941.
Bousios, A; Minga, E; Kalitsou, N; Pantermali, M; Tsaballa, A; Darzentas, N (30 April 2012). "MASiVEdb: the Sirevirus Plant Retrotransposon Database". BMC Genomics. 13: 158. doi:10.1186/1471-2164-13-158. PMC 3414828. PMID 22545773.
Pélissier, T; Tutois, S; Deragon, JM; Tourmente, S; Genestier, S; Picard, G (November 1995). "Athila, a new retroelement from Arabidopsis thaliana". Plant Molecular Biology. 29 (3): 441–52. doi:10.1007/bf00020976. PMID 8534844. S2CID 8296300.
Wright, DA; Voytas, DF (June 1998). "Potential retroviruses in plants: Tat1 is related to a group of Arabidopsis thaliana Ty3/gypsy retrotransposons that encode envelope-like proteins". Genetics. 149 (2): 703–15. doi:10.1093/genetics/149.2.703. PMC 1460185. PMID 9611185.
Wright, DA; Voytas, DF (January 2002). "Athila4 of Arabidopsis and Calypso of soybean define a lineage of endogenous plant retroviruses". Genome Research. 12 (1): 122–31. doi:10.1101/gr.196001. PMC 155253. PMID 11779837.
Wollrab, C; Heitkam, T; Holtgräwe, D; Weisshaar, B; Minoche, AE; Dohm, JC; Himmelbauer, H; Schmidt, T (November 2012). "Evolutionary reshuffling in the Errantivirus lineage Elbe within the Beta vulgaris genome". The Plant Journal. 72 (4): 636–51. doi:10.1111/j.1365-313x.2012.05107.x. hdl:11858/00-001M-0000-000E-F0B9-B. PMID 22804913.
Marín, I; Lloréns, C (July 2000). "Ty3/Gypsy retrotransposons: description of new Arabidopsis thaliana elements and evolutionary perspectives derived from comparative genomic data". Molecular Biology and Evolution. 17 (7): 1040–9. doi:10.1093/oxfordjournals.molbev.a026385. PMID 10889217.
Gorinsek, B; Gubensek, F; Kordis, D (May 2004). "Evolutionary genomics of chromoviruses in eukaryotes". Molecular Biology and Evolution. 21 (5): 781–98. doi:10.1093/molbev/msh057. PMID 14739248.
Novikova, O; Smyshlyaev, G; Blinov, A (8 April 2010). "Evolutionary genomics revealed interkingdom distribution of Tcn1-like chromodomain-containing Gypsy LTR retrotransposons among fungi and plants". BMC Genomics. 11: 231. doi:10.1186/1471-2164-11-231. PMC 2864245. PMID 20377908.
Gao, X; Hou, Y; Ebina, H; Levin, HL; Voytas, DF (March 2008). "Chromodomains direct integration of retrotransposons to heterochromatin". Genome Research. 18 (3): 359–69. doi:10.1101/gr.7146408. PMC 2259100. PMID 18256242.
Neumann, P; Navrátilová, A; Koblížková, A; Kejnovský, E; Hřibová, E; Hobza, R; Widmer, A; Doležel, J; Macas, J (3 March 2011). "Plant centromeric retrotransposons: a structural and cytogenetic perspective". Mobile DNA. 2 (1): 4. doi:10.1186/1759-8753-2-4. PMC 3059260. PMID 21371312.
Weber, B; Heitkam, T; Holtgräwe, D; Weisshaar, B; Minoche, AE; Dohm, JC; Himmelbauer, H; Schmidt, T (1 March 2013). "Highly diverse chromoviruses of Beta vulgaris are classified by chromodomains and chromosomal integration". Mobile DNA. 4 (1): 8. doi:10.1186/1759-8753-4-8. PMC 3605345. PMID 23448600.
Macas, J; Neumann, P (1 April 2007). "Ogre elements--a distinct group of plant Ty3/gypsy-like retrotransposons". Gene. 390 (1–2): 108–16. doi:10.1016/j.gene.2006.08.007. PMID 17052864.
Neumann, P; Pozárková, D; Macas, J (October 2003). "Highly abundant pea LTR retrotransposon Ogre is constitutively transcribed and partially spliced". Plant Molecular Biology. 53 (3): 399–410. CiteSeerX 10.1.1.551.7542. doi:10.1023/b:plan.0000006945.77043.ce. PMID 14750527. S2CID 13412101.
Ball, Hope C.; Ansari, Mohammad Y.; Ahmad, Nashrah; Novak, Kimberly; Haqqi, Tariq M. (November 2021). "A retrotransposon gag-like-3 gene RTL3 and SOX-9 co-regulate the expression of COL2A1 in chondrocytes". Connective Tissue Research. 62 (6): 615–628. doi:10.1080/03008207.2020.1828380. ISSN 1607-8438. PMC 8404968. PMID 33043724.
Llorens, Carlos; Soriano, Beatriz; Navarrete-Muñoz, Maria A.; Hafez, Ahmed; Arnau, Vicente; Benito, Jose Miguel; Gabaldon, Toni; Rallon, Norma; Pérez-Sánchez, Jaume; Krupovic, Mart (2021). "Reverse-Transcribing Viruses (Belpaoviridae, Metaviridae, and Pseudoviridae)". Encyclopedia of virology (Fourth ed.). Amsterdam. pp. 653–666. doi:10.1016/B978-0-12-809633-8.21514-8. ISBN 978-0-12-814516-6. S2CID 243337524.{{cite book}}: CS1 maint: location missing publisher (link)
Witte, Claus-Peter Le, Quang Hien Bureau, Thomas Kumar, Amar (2001). "Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes". Proceedings of the National Academy of Sciences of the United States of America. 98 (24). The National Academy of Sciences: 13778–13783. Bibcode:2001PNAS...9813778W. doi:10.1073/pnas.241341898. OCLC 678730241. PMC 61118. PMID 11717436.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Antonius-Klemola, Kristiina; Kalendar, Ruslan; Schulman, Alan H. (2006-01-11). "TRIM retrotransposons occur in apple and are polymorphic between varieties but not sports". Theoretical and Applied Genetics. 112 (6): 999–1008. doi:10.1007/s00122-005-0203-0. ISSN 0040-5752. PMID 16404583. S2CID 7035882.
Gao, Dongying; Li, Yupeng; Abernathy, Brian; Jackson, Scott (2014-10-29). "Landscape and evolutionary dynamics of terminal-repeat retrotransposons in miniature (TRIMs) in 48 whole plant genomes" (PDF). doi:10.1101/010850. S2CID 10238180. Retrieved 2020-10-03. {{cite journal}}: Cite journal requires |journal= (help)
Kalendar, R.; Tanskanen, J.; Chang, W.; Antonius, K.; Sela, H.; Peleg, O.; Schulman, A. H. (2008-04-11). "Cassandra retrotransposons carry independently transcribed 5S RNA". Proceedings of the National Academy of Sciences. 105 (15): 5833–5838. Bibcode:2008PNAS..105.5833K. doi:10.1073/pnas.0709698105. ISSN 0027-8424. PMC 2311327. PMID 18408163.
Maiwald, Sophie; Weber, Beatrice; Seibt, Kathrin M; Schmidt, Thomas; Heitkam, Tony (2020-10-03). "The Cassandra retrotransposon landscape in sugar beet (Beta vulgaris) and related Amaranthaceae: Recombination and re-shuffling lead to a high structural variability". Annals of Botany. 127 (1): 91–109. doi:10.1093/aob/mcaa176. ISSN 0305-7364. PMC 7750724. PMID 33009553.

dx.doi.org

Antonius-Klemola, Kristiina; Kalendar, Ruslan; Schulman, Alan H. (2006-01-11). "TRIM retrotransposons occur in apple and are polymorphic between varieties but not sports". Theoretical and Applied Genetics. 112 (6): 999–1008. doi:10.1007/s00122-005-0203-0. ISSN 0040-5752. PMID 16404583. S2CID 7035882.

geneticeducation.co.in

"What is Transposon's Target Site Duplication (TSD)?". 22 May 2019.

handle.net

hdl.handle.net

Grohme, Markus Alexander; Schloissnig, Siegfried; Rozanski, Andrei; Pippel, Martin; Young, George Robert; Winkler, Sylke; Brandl, Holger; Henry, Ian; Dahl, Andreas; Powell, Sean; Hiller, Michael; Myers, Eugene; Rink, Jochen Christian (January 2018). "The genome of Schmidtea mediterranea and the evolution of core cellular mechanisms". Nature. 554 (7690): 56–61. doi:10.1038/nature25473. hdl:21.11116/0000-0003-F5F3-6. ISSN 1476-4687.
Wollrab, C; Heitkam, T; Holtgräwe, D; Weisshaar, B; Minoche, AE; Dohm, JC; Himmelbauer, H; Schmidt, T (November 2012). "Evolutionary reshuffling in the Errantivirus lineage Elbe within the Beta vulgaris genome". The Plant Journal. 72 (4): 636–51. doi:10.1111/j.1365-313x.2012.05107.x. hdl:11858/00-001M-0000-000E-F0B9-B. PMID 22804913.

harvard.edu

ui.adsabs.harvard.edu

Laten, HM; Majumdar, A; Gaucher, EA (9 June 1998). "SIRE-1, a copia/Ty1-like retroelement from soybean, encodes a retroviral envelope-like protein". Proceedings of the National Academy of Sciences of the United States of America. 95 (12): 6897–902. Bibcode:1998PNAS...95.6897L. doi:10.1073/pnas.95.12.6897. PMC 22677. PMID 9618510.
Miguel, C; Simões, M; Oliveira, MM; Rocheta, M (November 2008). "Envelope-like retrotransposons in the plant kingdom: evidence of their presence in gymnosperms (Pinus pinaster)". Journal of Molecular Evolution. 67 (5): 517–25. Bibcode:2008JMolE..67..517M. doi:10.1007/s00239-008-9168-3. PMID 18925379. S2CID 28629941.
Witte, Claus-Peter Le, Quang Hien Bureau, Thomas Kumar, Amar (2001). "Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes". Proceedings of the National Academy of Sciences of the United States of America. 98 (24). The National Academy of Sciences: 13778–13783. Bibcode:2001PNAS...9813778W. doi:10.1073/pnas.241341898. OCLC 678730241. PMC 61118. PMID 11717436.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Kalendar, R.; Tanskanen, J.; Chang, W.; Antonius, K.; Sela, H.; Peleg, O.; Schulman, A. H. (2008-04-11). "Cassandra retrotransposons carry independently transcribed 5S RNA". Proceedings of the National Academy of Sciences. 105 (15): 5833–5838. Bibcode:2008PNAS..105.5833K. doi:10.1073/pnas.0709698105. ISSN 0027-8424. PMC 2311327. PMID 18408163.

nature.com

Grohme, Markus Alexander; Schloissnig, Siegfried; Rozanski, Andrei; Pippel, Martin; Young, George Robert; Winkler, Sylke; Brandl, Holger; Henry, Ian; Dahl, Andreas; Powell, Sean; Hiller, Michael; Myers, Eugene; Rink, Jochen Christian (January 2018). "The genome of Schmidtea mediterranea and the evolution of core cellular mechanisms". Nature. 554 (7690): 56–61. doi:10.1038/nature25473. hdl:21.11116/0000-0003-F5F3-6. ISSN 1476-4687.

nih.gov

pubmed.ncbi.nlm.nih.gov

Baucom, RS; Estill, JC; Chaparro, C; Upshaw, N; Jogi, A; Deragon, JM; Westerman, RP; Sanmiguel, PJ; Bennetzen, JL (November 2009). "Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome". PLOS Genetics. 5 (11): e1000732. doi:10.1371/journal.pgen.1000732. PMC 2774510. PMID 19936065.
McCarthy EM, McDonald JF (2004). "Long terminal repeat retrotransposons of Mus musculus". Genome Biol. 5 (3): R14. doi:10.1186/gb-2004-5-3-r14. PMC 395764. PMID 15003117.
Copeland CS, Mann VH, Morales ME, Kalinna BH, Brindley PJ (2005). "The Sinbad retrotransposon from the genome of the human blood fluke, Schistosoma mansoni, and the distribution of related Pao-like elements". BMC Evol. Biol. 5 (1): 20. doi:10.1186/1471-2148-5-20. PMC 554778. PMID 15725362.
Wicker T, Sabot F, Hua-Van A, et al. (December 2007). "A unified classification system for eukaryotic transposable elements". Nat. Rev. Genet. 8 (12): 973–82. doi:10.1038/nrg2165. PMID 17984973. S2CID 32132898.
Sandmeyer, Suzanne B; Clemens, Kristina A (2010). "Function of a retrotransposon nucleocapsid protein". RNA Biology. 7 (6): 642–654. doi:10.4161/rna.7.6.14117. ISSN 1547-6286. PMC 3073325. PMID 21189452.
Wicker, Thomas; Sabot, François; Hua-Van, Aurélie; Bennetzen, Jeffrey L.; Capy, Pierre; Chalhoub, Boulos; Flavell, Andrew; Leroy, Philippe; Morgante, Michele (December 2007). "A unified classification system for eukaryotic transposable elements". Nature Reviews. Genetics. 8 (12): 973–982. doi:10.1038/nrg2165. ISSN 1471-0064. PMID 17984973. S2CID 32132898.
GAO, XIANG; HAVECKER, ERICKA R.; BARANOV, PAVEL V.; ATKINS, JOHN F.; VOYTAS, DANIEL F. (December 2003). "Translational recoding signals between gag and pol in diverse LTR retrotransposons". RNA. 9 (12): 1422–1430. doi:10.1261/rna.5105503. ISSN 1355-8382. PMC 1370496. PMID 14623998.
Wicker, T; Keller, B (July 2007). "Genome-wide comparative analysis of copia retrotransposons in Triticeae, rice, and Arabidopsis reveals conserved ancient evolutionary lineages and distinct dynamics of individual copia families". Genome Research. 17 (7): 1072–81. doi:10.1101/gr.6214107. PMC 1899118. PMID 17556529.
Llorens, C; Muñoz-Pomer, A; Bernad, L; Botella, H; Moya, A (2 November 2009). "Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees". Biology Direct. 4: 41. doi:10.1186/1745-6150-4-41. PMC 2774666. PMID 19883502.
Laten, HM; Majumdar, A; Gaucher, EA (9 June 1998). "SIRE-1, a copia/Ty1-like retroelement from soybean, encodes a retroviral envelope-like protein". Proceedings of the National Academy of Sciences of the United States of America. 95 (12): 6897–902. Bibcode:1998PNAS...95.6897L. doi:10.1073/pnas.95.12.6897. PMC 22677. PMID 9618510.
Bousios, A; Kourmpetis, YA; Pavlidis, P; Minga, E; Tsaftaris, A; Darzentas, N (February 2012). "The turbulent life of Sirevirus retrotransposons and the evolution of the maize genome: more than ten thousand elements tell the story". The Plant Journal. 69 (3): 475–88. doi:10.1111/j.1365-313x.2011.04806.x. PMID 21967390.
Kapitonov, VV; Jurka, J (1999). "Molecular paleontology of transposable elements from Arabidopsis thaliana". Genetica. 107 (1–3): 27–37. doi:10.1023/a:1004030922447. PMID 10952195. S2CID 27249664.
Weber, B; Wenke, T; Frömmel, U; Schmidt, T; Heitkam, T (February 2010). "The Ty1-copia families SALIRE and Cotzilla populating the Beta vulgaris genome show remarkable differences in abundance, chromosomal distribution, and age". Chromosome Research. 18 (2): 247–63. doi:10.1007/s10577-009-9104-4. PMID 20039119. S2CID 24883110.
Miguel, C; Simões, M; Oliveira, MM; Rocheta, M (November 2008). "Envelope-like retrotransposons in the plant kingdom: evidence of their presence in gymnosperms (Pinus pinaster)". Journal of Molecular Evolution. 67 (5): 517–25. Bibcode:2008JMolE..67..517M. doi:10.1007/s00239-008-9168-3. PMID 18925379. S2CID 28629941.
Bousios, A; Minga, E; Kalitsou, N; Pantermali, M; Tsaballa, A; Darzentas, N (30 April 2012). "MASiVEdb: the Sirevirus Plant Retrotransposon Database". BMC Genomics. 13: 158. doi:10.1186/1471-2164-13-158. PMC 3414828. PMID 22545773.
Pélissier, T; Tutois, S; Deragon, JM; Tourmente, S; Genestier, S; Picard, G (November 1995). "Athila, a new retroelement from Arabidopsis thaliana". Plant Molecular Biology. 29 (3): 441–52. doi:10.1007/bf00020976. PMID 8534844. S2CID 8296300.
Wright, DA; Voytas, DF (June 1998). "Potential retroviruses in plants: Tat1 is related to a group of Arabidopsis thaliana Ty3/gypsy retrotransposons that encode envelope-like proteins". Genetics. 149 (2): 703–15. doi:10.1093/genetics/149.2.703. PMC 1460185. PMID 9611185.
Wright, DA; Voytas, DF (January 2002). "Athila4 of Arabidopsis and Calypso of soybean define a lineage of endogenous plant retroviruses". Genome Research. 12 (1): 122–31. doi:10.1101/gr.196001. PMC 155253. PMID 11779837.
Wollrab, C; Heitkam, T; Holtgräwe, D; Weisshaar, B; Minoche, AE; Dohm, JC; Himmelbauer, H; Schmidt, T (November 2012). "Evolutionary reshuffling in the Errantivirus lineage Elbe within the Beta vulgaris genome". The Plant Journal. 72 (4): 636–51. doi:10.1111/j.1365-313x.2012.05107.x. hdl:11858/00-001M-0000-000E-F0B9-B. PMID 22804913.
Marín, I; Lloréns, C (July 2000). "Ty3/Gypsy retrotransposons: description of new Arabidopsis thaliana elements and evolutionary perspectives derived from comparative genomic data". Molecular Biology and Evolution. 17 (7): 1040–9. doi:10.1093/oxfordjournals.molbev.a026385. PMID 10889217.
Gorinsek, B; Gubensek, F; Kordis, D (May 2004). "Evolutionary genomics of chromoviruses in eukaryotes". Molecular Biology and Evolution. 21 (5): 781–98. doi:10.1093/molbev/msh057. PMID 14739248.
Novikova, O; Smyshlyaev, G; Blinov, A (8 April 2010). "Evolutionary genomics revealed interkingdom distribution of Tcn1-like chromodomain-containing Gypsy LTR retrotransposons among fungi and plants". BMC Genomics. 11: 231. doi:10.1186/1471-2164-11-231. PMC 2864245. PMID 20377908.
Gao, X; Hou, Y; Ebina, H; Levin, HL; Voytas, DF (March 2008). "Chromodomains direct integration of retrotransposons to heterochromatin". Genome Research. 18 (3): 359–69. doi:10.1101/gr.7146408. PMC 2259100. PMID 18256242.
Neumann, P; Navrátilová, A; Koblížková, A; Kejnovský, E; Hřibová, E; Hobza, R; Widmer, A; Doležel, J; Macas, J (3 March 2011). "Plant centromeric retrotransposons: a structural and cytogenetic perspective". Mobile DNA. 2 (1): 4. doi:10.1186/1759-8753-2-4. PMC 3059260. PMID 21371312.
Weber, B; Heitkam, T; Holtgräwe, D; Weisshaar, B; Minoche, AE; Dohm, JC; Himmelbauer, H; Schmidt, T (1 March 2013). "Highly diverse chromoviruses of Beta vulgaris are classified by chromodomains and chromosomal integration". Mobile DNA. 4 (1): 8. doi:10.1186/1759-8753-4-8. PMC 3605345. PMID 23448600.
Macas, J; Neumann, P (1 April 2007). "Ogre elements--a distinct group of plant Ty3/gypsy-like retrotransposons". Gene. 390 (1–2): 108–16. doi:10.1016/j.gene.2006.08.007. PMID 17052864.
Neumann, P; Pozárková, D; Macas, J (October 2003). "Highly abundant pea LTR retrotransposon Ogre is constitutively transcribed and partially spliced". Plant Molecular Biology. 53 (3): 399–410. CiteSeerX 10.1.1.551.7542. doi:10.1023/b:plan.0000006945.77043.ce. PMID 14750527. S2CID 13412101.
Ball, Hope C.; Ansari, Mohammad Y.; Ahmad, Nashrah; Novak, Kimberly; Haqqi, Tariq M. (November 2021). "A retrotransposon gag-like-3 gene RTL3 and SOX-9 co-regulate the expression of COL2A1 in chondrocytes". Connective Tissue Research. 62 (6): 615–628. doi:10.1080/03008207.2020.1828380. ISSN 1607-8438. PMC 8404968. PMID 33043724.
Witte, Claus-Peter Le, Quang Hien Bureau, Thomas Kumar, Amar (2001). "Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes". Proceedings of the National Academy of Sciences of the United States of America. 98 (24). The National Academy of Sciences: 13778–13783. Bibcode:2001PNAS...9813778W. doi:10.1073/pnas.241341898. OCLC 678730241. PMC 61118. PMID 11717436.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Antonius-Klemola, Kristiina; Kalendar, Ruslan; Schulman, Alan H. (2006-01-11). "TRIM retrotransposons occur in apple and are polymorphic between varieties but not sports". Theoretical and Applied Genetics. 112 (6): 999–1008. doi:10.1007/s00122-005-0203-0. ISSN 0040-5752. PMID 16404583. S2CID 7035882.
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Maiwald, Sophie; Weber, Beatrice; Seibt, Kathrin M; Schmidt, Thomas; Heitkam, Tony (2020-10-03). "The Cassandra retrotransposon landscape in sugar beet (Beta vulgaris) and related Amaranthaceae: Recombination and re-shuffling lead to a high structural variability". Annals of Botany. 127 (1): 91–109. doi:10.1093/aob/mcaa176. ISSN 0305-7364. PMC 7750724. PMID 33009553.

ncbi.nlm.nih.gov

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worldcat.org

search.worldcat.org

Grohme, Markus Alexander; Schloissnig, Siegfried; Rozanski, Andrei; Pippel, Martin; Young, George Robert; Winkler, Sylke; Brandl, Holger; Henry, Ian; Dahl, Andreas; Powell, Sean; Hiller, Michael; Myers, Eugene; Rink, Jochen Christian (January 2018). "The genome of Schmidtea mediterranea and the evolution of core cellular mechanisms". Nature. 554 (7690): 56–61. doi:10.1038/nature25473. hdl:21.11116/0000-0003-F5F3-6. ISSN 1476-4687.
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Wicker, Thomas; Sabot, François; Hua-Van, Aurélie; Bennetzen, Jeffrey L.; Capy, Pierre; Chalhoub, Boulos; Flavell, Andrew; Leroy, Philippe; Morgante, Michele (December 2007). "A unified classification system for eukaryotic transposable elements". Nature Reviews. Genetics. 8 (12): 973–982. doi:10.1038/nrg2165. ISSN 1471-0064. PMID 17984973. S2CID 32132898.
GAO, XIANG; HAVECKER, ERICKA R.; BARANOV, PAVEL V.; ATKINS, JOHN F.; VOYTAS, DANIEL F. (December 2003). "Translational recoding signals between gag and pol in diverse LTR retrotransposons". RNA. 9 (12): 1422–1430. doi:10.1261/rna.5105503. ISSN 1355-8382. PMC 1370496. PMID 14623998.
Ball, Hope C.; Ansari, Mohammad Y.; Ahmad, Nashrah; Novak, Kimberly; Haqqi, Tariq M. (November 2021). "A retrotransposon gag-like-3 gene RTL3 and SOX-9 co-regulate the expression of COL2A1 in chondrocytes". Connective Tissue Research. 62 (6): 615–628. doi:10.1080/03008207.2020.1828380. ISSN 1607-8438. PMC 8404968. PMID 33043724.
Witte, Claus-Peter Le, Quang Hien Bureau, Thomas Kumar, Amar (2001). "Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes". Proceedings of the National Academy of Sciences of the United States of America. 98 (24). The National Academy of Sciences: 13778–13783. Bibcode:2001PNAS...9813778W. doi:10.1073/pnas.241341898. OCLC 678730241. PMC 61118. PMID 11717436.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Antonius-Klemola, Kristiina; Kalendar, Ruslan; Schulman, Alan H. (2006-01-11). "TRIM retrotransposons occur in apple and are polymorphic between varieties but not sports". Theoretical and Applied Genetics. 112 (6): 999–1008. doi:10.1007/s00122-005-0203-0. ISSN 0040-5752. PMID 16404583. S2CID 7035882.
Kalendar, R.; Tanskanen, J.; Chang, W.; Antonius, K.; Sela, H.; Peleg, O.; Schulman, A. H. (2008-04-11). "Cassandra retrotransposons carry independently transcribed 5S RNA". Proceedings of the National Academy of Sciences. 105 (15): 5833–5838. Bibcode:2008PNAS..105.5833K. doi:10.1073/pnas.0709698105. ISSN 0027-8424. PMC 2311327. PMID 18408163.
Maiwald, Sophie; Weber, Beatrice; Seibt, Kathrin M; Schmidt, Thomas; Heitkam, Tony (2020-10-03). "The Cassandra retrotransposon landscape in sugar beet (Beta vulgaris) and related Amaranthaceae: Recombination and re-shuffling lead to a high structural variability". Annals of Botany. 127 (1): 91–109. doi:10.1093/aob/mcaa176. ISSN 0305-7364. PMC 7750724. PMID 33009553.

worldcat.org

Witte, Claus-Peter Le, Quang Hien Bureau, Thomas Kumar, Amar (2001). "Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes". Proceedings of the National Academy of Sciences of the United States of America. 98 (24). The National Academy of Sciences: 13778–13783. Bibcode:2001PNAS...9813778W. doi:10.1073/pnas.241341898. OCLC 678730241. PMC 61118. PMID 11717436.{{cite journal}}: CS1 maint: multiple names: authors list (link)