Lattice protein (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Lattice protein" in English language version.

refsWebsite

Global rank English rank

20nih.gov

4^th place

17doi.org

2^nd place

3harvard.edu

18^th place

17^th place

2semanticscholar.org

11^th place

8^th place

1arxiv.org

69^th place

59^th place

1worldcat.org

5^th place

arxiv.org

Socci ND, Onuchic JN (1994-07-15). "Folding kinetics of proteinlike heteropolymers". The Journal of Chemical Physics. 101 (2): 1519–1528. arXiv:cond-mat/9404001. doi:10.1063/1.467775. ISSN 0021-9606. S2CID 10672674.

doi.org

Lau KF, Dill KA (1989). "A lattice statistical mechanics model of the conformational and sequence spaces of proteins". Macromolecules. 22 (10): 3986–97. Bibcode:1989MaMol..22.3986L. doi:10.1021/ma00200a030.
Bechini A (2013). "On the characterization and software implementation of general protein lattice models". PLOS ONE. 8 (3): e59504. Bibcode:2013PLoSO...859504B. doi:10.1371/journal.pone.0059504. PMC 3612044. PMID 23555684.
Voelz VA, Bowman GR, Beauchamp K, Pande VS (February 2010). "Molecular simulation of ab initio protein folding for a millisecond folder NTL9(1-39)". Journal of the American Chemical Society. 132 (5): 1526–8. doi:10.1021/ja9090353. PMC 2835335. PMID 20070076.
Berger B, Leighton T (1998). "Protein folding in the hydrophobic-hydrophilic (HP) model is NP-complete". Journal of Computational Biology. 5 (1): 27–40. doi:10.1089/cmb.1998.5.27. PMID 9541869.
Dubey SP, Kini NG, Balaji S, Kumar MS (2018). "A Review of Protein Structure Prediction Using Lattice Model". Critical Reviews in Biomedical Engineering. 46 (2): 147–162. doi:10.1615/critrevbiomedeng.2018026093. PMID 30055531.
Dill KA (March 1985). "Theory for the folding and stability of globular proteins". Biochemistry. 24 (6): 1501–9. doi:10.1021/bi00327a032. PMID 3986190.
Su SC, Lin CJ, Ting CK (December 2010). "An efficient hybrid of hill-climbing and genetic algorithm for 2D triangular protein structure prediction". 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW). IEEE. pp. 51–56. doi:10.1109/BIBMW.2010.5703772. ISBN 978-1-4244-8303-7. S2CID 44932436.
Bertram, Jason; Masel, Joanna (April 2020). "Evolution Rapidly Optimizes Stability and Aggregation in Lattice Proteins Despite Pervasive Landscape Valleys and Mazes". Genetics. 214 (4): 1047–1057. doi:10.1534/genetics.120.302815. PMC 7153934. PMID 32107278.
Onuchic JN, Wolynes PG, Luthey-Schulten Z, Socci ND (April 1995). "Toward an outline of the topography of a realistic protein-folding funnel". Proceedings of the National Academy of Sciences of the United States of America. 92 (8): 3626–30. Bibcode:1995PNAS...92.3626O. doi:10.1073/pnas.92.8.3626. PMC 42220. PMID 7724609.
Moreno-Hernández S, Levitt M (June 2012). "Comparative modeling and protein-like features of hydrophobic-polar models on a two-dimensional lattice". Proteins. 80 (6): 1683–93. doi:10.1002/prot.24067. PMC 3348970. PMID 22411636.
Socci ND, Onuchic JN (1994-07-15). "Folding kinetics of proteinlike heteropolymers". The Journal of Chemical Physics. 101 (2): 1519–1528. arXiv:cond-mat/9404001. doi:10.1063/1.467775. ISSN 0021-9606. S2CID 10672674.
Fiebig KM, Dill KA (1993-02-15). "Protein core assembly processes". The Journal of Chemical Physics. 98 (4): 3475–3487. doi:10.1063/1.464068.
Jiang M, Zhu B (February 2005). "Protein folding on the hexagonal lattice in the HP model". Journal of Bioinformatics and Computational Biology. 3 (1): 19–34. doi:10.1142/S0219720005000850. PMID 15751110.
Shaw D, Shohidull Islam AS, Sohel Rahman M, Hasan M (2014-01-24). "Protein folding in HP model on hexagonal lattices with diagonals". BMC Bioinformatics. 15 Suppl 2 (2): S7. doi:10.1186/1471-2105-15-S2-S7. PMC 4016602. PMID 24564789.
Backofen R, Will S, Bornberg-Bauer E (March 1999). "Application of constraint programming techniques for structure prediction of lattice proteins with extended alphabets". Bioinformatics. 15 (3): 234–42. doi:10.1093/bioinformatics/15.3.234. PMID 10222411.
Crippen GM (April 1991). "Prediction of protein folding from amino acid sequence over discrete conformation spaces". Biochemistry. 30 (17): 4232–7. doi:10.1021/bi00231a018. PMID 2021616.
Dill KA, Bromberg S, Yue K, Fiebig KM, Yee DP, Thomas PD, Chan HS (April 1995). "Principles of protein folding--a perspective from simple exact models". Protein Science. 4 (4): 561–602. doi:10.1002/pro.5560040401. PMC 2143098. PMID 7613459.

harvard.edu

ui.adsabs.harvard.edu

Lau KF, Dill KA (1989). "A lattice statistical mechanics model of the conformational and sequence spaces of proteins". Macromolecules. 22 (10): 3986–97. Bibcode:1989MaMol..22.3986L. doi:10.1021/ma00200a030.
Bechini A (2013). "On the characterization and software implementation of general protein lattice models". PLOS ONE. 8 (3): e59504. Bibcode:2013PLoSO...859504B. doi:10.1371/journal.pone.0059504. PMC 3612044. PMID 23555684.
Onuchic JN, Wolynes PG, Luthey-Schulten Z, Socci ND (April 1995). "Toward an outline of the topography of a realistic protein-folding funnel". Proceedings of the National Academy of Sciences of the United States of America. 92 (8): 3626–30. Bibcode:1995PNAS...92.3626O. doi:10.1073/pnas.92.8.3626. PMC 42220. PMID 7724609.

nih.gov

pubmed.ncbi.nlm.nih.gov

Bechini A (2013). "On the characterization and software implementation of general protein lattice models". PLOS ONE. 8 (3): e59504. Bibcode:2013PLoSO...859504B. doi:10.1371/journal.pone.0059504. PMC 3612044. PMID 23555684.
Voelz VA, Bowman GR, Beauchamp K, Pande VS (February 2010). "Molecular simulation of ab initio protein folding for a millisecond folder NTL9(1-39)". Journal of the American Chemical Society. 132 (5): 1526–8. doi:10.1021/ja9090353. PMC 2835335. PMID 20070076.
Berger B, Leighton T (1998). "Protein folding in the hydrophobic-hydrophilic (HP) model is NP-complete". Journal of Computational Biology. 5 (1): 27–40. doi:10.1089/cmb.1998.5.27. PMID 9541869.
Dubey SP, Kini NG, Balaji S, Kumar MS (2018). "A Review of Protein Structure Prediction Using Lattice Model". Critical Reviews in Biomedical Engineering. 46 (2): 147–162. doi:10.1615/critrevbiomedeng.2018026093. PMID 30055531.
Dill KA (March 1985). "Theory for the folding and stability of globular proteins". Biochemistry. 24 (6): 1501–9. doi:10.1021/bi00327a032. PMID 3986190.
Bertram, Jason; Masel, Joanna (April 2020). "Evolution Rapidly Optimizes Stability and Aggregation in Lattice Proteins Despite Pervasive Landscape Valleys and Mazes". Genetics. 214 (4): 1047–1057. doi:10.1534/genetics.120.302815. PMC 7153934. PMID 32107278.
Onuchic JN, Wolynes PG, Luthey-Schulten Z, Socci ND (April 1995). "Toward an outline of the topography of a realistic protein-folding funnel". Proceedings of the National Academy of Sciences of the United States of America. 92 (8): 3626–30. Bibcode:1995PNAS...92.3626O. doi:10.1073/pnas.92.8.3626. PMC 42220. PMID 7724609.
Moreno-Hernández S, Levitt M (June 2012). "Comparative modeling and protein-like features of hydrophobic-polar models on a two-dimensional lattice". Proteins. 80 (6): 1683–93. doi:10.1002/prot.24067. PMC 3348970. PMID 22411636.
Jiang M, Zhu B (February 2005). "Protein folding on the hexagonal lattice in the HP model". Journal of Bioinformatics and Computational Biology. 3 (1): 19–34. doi:10.1142/S0219720005000850. PMID 15751110.
Shaw D, Shohidull Islam AS, Sohel Rahman M, Hasan M (2014-01-24). "Protein folding in HP model on hexagonal lattices with diagonals". BMC Bioinformatics. 15 Suppl 2 (2): S7. doi:10.1186/1471-2105-15-S2-S7. PMC 4016602. PMID 24564789.
Backofen R, Will S, Bornberg-Bauer E (March 1999). "Application of constraint programming techniques for structure prediction of lattice proteins with extended alphabets". Bioinformatics. 15 (3): 234–42. doi:10.1093/bioinformatics/15.3.234. PMID 10222411.
Crippen GM (April 1991). "Prediction of protein folding from amino acid sequence over discrete conformation spaces". Biochemistry. 30 (17): 4232–7. doi:10.1021/bi00231a018. PMID 2021616.
Dill KA, Bromberg S, Yue K, Fiebig KM, Yee DP, Thomas PD, Chan HS (April 1995). "Principles of protein folding--a perspective from simple exact models". Protein Science. 4 (4): 561–602. doi:10.1002/pro.5560040401. PMC 2143098. PMID 7613459.

ncbi.nlm.nih.gov

Bechini A (2013). "On the characterization and software implementation of general protein lattice models". PLOS ONE. 8 (3): e59504. Bibcode:2013PLoSO...859504B. doi:10.1371/journal.pone.0059504. PMC 3612044. PMID 23555684.
Voelz VA, Bowman GR, Beauchamp K, Pande VS (February 2010). "Molecular simulation of ab initio protein folding for a millisecond folder NTL9(1-39)". Journal of the American Chemical Society. 132 (5): 1526–8. doi:10.1021/ja9090353. PMC 2835335. PMID 20070076.
Bertram, Jason; Masel, Joanna (April 2020). "Evolution Rapidly Optimizes Stability and Aggregation in Lattice Proteins Despite Pervasive Landscape Valleys and Mazes". Genetics. 214 (4): 1047–1057. doi:10.1534/genetics.120.302815. PMC 7153934. PMID 32107278.
Onuchic JN, Wolynes PG, Luthey-Schulten Z, Socci ND (April 1995). "Toward an outline of the topography of a realistic protein-folding funnel". Proceedings of the National Academy of Sciences of the United States of America. 92 (8): 3626–30. Bibcode:1995PNAS...92.3626O. doi:10.1073/pnas.92.8.3626. PMC 42220. PMID 7724609.
Moreno-Hernández S, Levitt M (June 2012). "Comparative modeling and protein-like features of hydrophobic-polar models on a two-dimensional lattice". Proteins. 80 (6): 1683–93. doi:10.1002/prot.24067. PMC 3348970. PMID 22411636.
Shaw D, Shohidull Islam AS, Sohel Rahman M, Hasan M (2014-01-24). "Protein folding in HP model on hexagonal lattices with diagonals". BMC Bioinformatics. 15 Suppl 2 (2): S7. doi:10.1186/1471-2105-15-S2-S7. PMC 4016602. PMID 24564789.
Dill KA, Bromberg S, Yue K, Fiebig KM, Yee DP, Thomas PD, Chan HS (April 1995). "Principles of protein folding--a perspective from simple exact models". Protein Science. 4 (4): 561–602. doi:10.1002/pro.5560040401. PMC 2143098. PMID 7613459.

semanticscholar.org

api.semanticscholar.org

Su SC, Lin CJ, Ting CK (December 2010). "An efficient hybrid of hill-climbing and genetic algorithm for 2D triangular protein structure prediction". 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW). IEEE. pp. 51–56. doi:10.1109/BIBMW.2010.5703772. ISBN 978-1-4244-8303-7. S2CID 44932436.
Socci ND, Onuchic JN (1994-07-15). "Folding kinetics of proteinlike heteropolymers". The Journal of Chemical Physics. 101 (2): 1519–1528. arXiv:cond-mat/9404001. doi:10.1063/1.467775. ISSN 0021-9606. S2CID 10672674.

worldcat.org

search.worldcat.org

Socci ND, Onuchic JN (1994-07-15). "Folding kinetics of proteinlike heteropolymers". The Journal of Chemical Physics. 101 (2): 1519–1528. arXiv:cond-mat/9404001. doi:10.1063/1.467775. ISSN 0021-9606. S2CID 10672674.