List of Folding@home cores (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "List of Folding@home cores" in English language version.

refsWebsite

Global rank English rank

25web.archive.org

1^st place

17foldingforum.org

low place

10stanford.edu

179^th place

183^rd place

9nih.gov

4^th place

8doi.org

2^nd place

7harvard.edu

18^th place

17^th place

5typepad.com

1,429^th place

932^nd place

5archive.today

14^th place

2caltech.edu

887^th place

714^th place

2aip.org

2,204^th place

1,735^th place

2ambermd.org

low place

2foldingathome.org

low place

1wustl.edu

3,160^th place

2,065^th place

1supercomputing.org

low place

1deshawresearch.com

low place

1sourceforge.net

1,669^th place

1,290^th place

aip.org

scitation.aip.org

Kevin J. Bowers; Ron O. Dror & David E. Shaw (2006). "The Midpoint Method for Parallelization of Particle Simulations". Journal of Chemical Physics. 124 (18). J. Chem. Phys.: 184109:1–11. Bibcode:2006JChPh.124r4109B. doi:10.1063/1.2191489. PMID 16709099.
Ross A. Lippert; Kevin J. Bowers; Ron O. Dror; Michael P. Eastwood; Brent A. Gregersen; John L. Klepeis; István Kolossváry & David E. Shaw (2007). "A Common, Avoidable Source of Error in Molecular Dynamics Integrators". Journal of Chemical Physics. 126 (4). J. Chem. Phys.: 046101:1–2. Bibcode:2007JChPh.126d6101L. doi:10.1063/1.2431176. PMID 17286520.

ambermd.org

"Amber". 2011. Retrieved 2011-08-23.
"Amber Developers". 2011. Retrieved 2011-08-23.

archive.today

"Gromacs 33 Core". 2011. Archived from the original on January 8, 2013. Retrieved 2011-08-21.
"Gromacs SREM Core". 2011. Archived from the original on January 8, 2013. Retrieved 2011-08-24.
"Gromacs Simulated Tempering core". 2011. Archived from the original on January 8, 2013. Retrieved 2011-08-24.
"GB Gromacs". 2011. Archived from the original on January 8, 2013. Retrieved 2011-08-22.
"Gromacs CVS SMP2 Core". 2011. Archived from the original on January 8, 2013. Retrieved 2011-08-22.

caltech.edu

p450.caltech.edu

"SHARPEN". Archived from the original on December 2, 2008.
"SHARPEN: Systematic Hierarchical Algorithms for Rotamers and Proteins on an Extended Network (deadlink)". Archived from the original (About) on December 1, 2008.

deshawresearch.com

Edmond Chow; Charles A. Rendleman; Kevin J. Bowers; Ron O. Dror; Douglas H. Hughes; Justin Gullingsrud; Federico D. Sacerdoti & David E. Shaw (2008). "Desmond Performance on a Cluster of Multicore Processors". D. E. Shaw Research Technical Report DESRES/TR--2008-01, July 2008. {{cite journal}}: Cite journal requires |journal= (help)

doi.org

Sugita, Yuji; Okamoto, Yuko (1999). "Replica-exchange molecular dynamics method for protein folding". Chemical Physics Letters. 314 (1–2): 141–151. Bibcode:1999CPL...314..141S. doi:10.1016/S0009-2614(99)01123-9.
R. Car & M. Parrinello (1985). "Unified Approach for Molecular Dynamics and Density-Functional Theory". Phys. Rev. Lett. 55 (22): 2471–2474. Bibcode:1985PhRvL..55.2471C. doi:10.1103/PhysRevLett.55.2471. PMID 10032153.
Kevin J. Bowers; Edmond Chow; Huafeng Xu; Ron O. Dror; Michael P. Eastwood; Brent A. Gregersen; John L. Klepeis; István Kolossváry; Mark A. Moraes; Federico D. Sacerdoti; John K. Salmon; Yibing Shan & David E. Shaw (2006). "Scalable Algorithms for Molecular Dynamics Simulations on Commodity Clusters" (PDF). ACM/IEEE SC 2006 Conference (SC'06). ACM. p. 43. doi:10.1109/SC.2006.54. ISBN 0-7695-2700-0.
Morten Ø. Jensen; David W. Borhani; Kresten Lindorff-Larsen; Paul Maragakis; Vishwanath Jogini; Michael P. Eastwood; Ron O. Dror & David E. Shaw (2010). "Principles of Conduction and Hydrophobic Gating in K+ Channels". Proceedings of the National Academy of Sciences of the United States of America. 107 (13). PNAS: 5833–5838. Bibcode:2010PNAS..107.5833J. doi:10.1073/pnas.0911691107. PMC 2851896. PMID 20231479.
Ron O. Dror; Daniel H. Arlow; David W. Borhani; Morten Ø. Jensen; Stefano Piana & David E. Shaw (2009). "Identification of Two Distinct Inactive Conformations of the ß2-Adrenergic Receptor Reconciles Structural and Biochemical Observations". Proceedings of the National Academy of Sciences of the United States of America. 106 (12). PNAS: 4689–4694. Bibcode:2009PNAS..106.4689D. doi:10.1073/pnas.0811065106. PMC 2650503. PMID 19258456.
Yibing Shan; Markus A. Seeliger; Michael P. Eastwood; Filipp Frank; Huafeng Xu; Morten Ø. Jensen; Ron O. Dror; John Kuriyan & David E. Shaw (2009). "A Conserved Protonation-Dependent Switch Controls Drug Binding in the Abl Kinase". Proceedings of the National Academy of Sciences of the United States of America. 106 (1). PNAS: 139–144. Bibcode:2009PNAS..106..139S. doi:10.1073/pnas.0811223106. PMC 2610013. PMID 19109437.
Kevin J. Bowers; Ron O. Dror & David E. Shaw (2006). "The Midpoint Method for Parallelization of Particle Simulations". Journal of Chemical Physics. 124 (18). J. Chem. Phys.: 184109:1–11. Bibcode:2006JChPh.124r4109B. doi:10.1063/1.2191489. PMID 16709099.
Ross A. Lippert; Kevin J. Bowers; Ron O. Dror; Michael P. Eastwood; Brent A. Gregersen; John L. Klepeis; István Kolossváry & David E. Shaw (2007). "A Common, Avoidable Source of Error in Molecular Dynamics Integrators". Journal of Chemical Physics. 126 (4). J. Chem. Phys.: 046101:1–2. Bibcode:2007JChPh.126d6101L. doi:10.1063/1.2431176. PMID 17286520.

foldingathome.org

apps.foldingathome.org

"Folding@home Project Summary". Retrieved 2019-09-15.

foldingathome.org

"New Client with ARM Support". 24 November 2020. Archived from the original on 2024-06-19.

foldingforum.org

Zagen30 (2011). "Re: Lucid Virtu and Foldig At Home". Retrieved 2011-08-30.{{cite web}}: CS1 maint: numeric names: authors list (link)
"CPU FAH core with AVX support? Mentioned a while back?". 2016-11-07. Retrieved 2017-02-18.
Project 18803 on FAH (CPU, 0xa9), 2024-05-20, retrieved 2025-04-08
"GPU CORE22 0.0.2 coming to ADVANCED". Retrieved 2020-02-14.
"core22 0.0.20 limited testing with project 17110". Retrieved 2021-01-14.
"New OpenMM core Core23 available for public use".
"New release: extra-large work units". 2011. Retrieved 2011-08-28.
"Folding Forum • View topic - Public Release of New A4 Cores".
"Folding Forum • View topic - Project 7600 Adv -> Full FAH".
"Project 10412 now on advanced". 2010. Retrieved 2011-09-03.
kasson (2011-10-11). "Re: Project:6099 run:3 clone:4 gen:0 - Core needs updating". Retrieved 2011-10-11.
"Re: SHARPEN". 2010. Retrieved 2011-08-29.
ihaque (Pande Group member) (2009). "Folding Forum: Announcing project 5900 and Core_14 on advmethods". Retrieved 2011-08-23.
"Core 18 and Maxwell". Retrieved 19 February 2015.
"Core18 Projects 10470-10473 to FAH". Retrieved 19 February 2015.
"New Core18 (login required)". Retrieved 19 February 2015.
"Core 21 v0.0.11 moving to FAH with p9704, p9712". Retrieved 2019-09-18.

harvard.edu

ui.adsabs.harvard.edu

Sugita, Yuji; Okamoto, Yuko (1999). "Replica-exchange molecular dynamics method for protein folding". Chemical Physics Letters. 314 (1–2): 141–151. Bibcode:1999CPL...314..141S. doi:10.1016/S0009-2614(99)01123-9.
R. Car & M. Parrinello (1985). "Unified Approach for Molecular Dynamics and Density-Functional Theory". Phys. Rev. Lett. 55 (22): 2471–2474. Bibcode:1985PhRvL..55.2471C. doi:10.1103/PhysRevLett.55.2471. PMID 10032153.
Morten Ø. Jensen; David W. Borhani; Kresten Lindorff-Larsen; Paul Maragakis; Vishwanath Jogini; Michael P. Eastwood; Ron O. Dror & David E. Shaw (2010). "Principles of Conduction and Hydrophobic Gating in K+ Channels". Proceedings of the National Academy of Sciences of the United States of America. 107 (13). PNAS: 5833–5838. Bibcode:2010PNAS..107.5833J. doi:10.1073/pnas.0911691107. PMC 2851896. PMID 20231479.
Ron O. Dror; Daniel H. Arlow; David W. Borhani; Morten Ø. Jensen; Stefano Piana & David E. Shaw (2009). "Identification of Two Distinct Inactive Conformations of the ß2-Adrenergic Receptor Reconciles Structural and Biochemical Observations". Proceedings of the National Academy of Sciences of the United States of America. 106 (12). PNAS: 4689–4694. Bibcode:2009PNAS..106.4689D. doi:10.1073/pnas.0811065106. PMC 2650503. PMID 19258456.
Yibing Shan; Markus A. Seeliger; Michael P. Eastwood; Filipp Frank; Huafeng Xu; Morten Ø. Jensen; Ron O. Dror; John Kuriyan & David E. Shaw (2009). "A Conserved Protonation-Dependent Switch Controls Drug Binding in the Abl Kinase". Proceedings of the National Academy of Sciences of the United States of America. 106 (1). PNAS: 139–144. Bibcode:2009PNAS..106..139S. doi:10.1073/pnas.0811223106. PMC 2610013. PMID 19109437.
Kevin J. Bowers; Ron O. Dror & David E. Shaw (2006). "The Midpoint Method for Parallelization of Particle Simulations". Journal of Chemical Physics. 124 (18). J. Chem. Phys.: 184109:1–11. Bibcode:2006JChPh.124r4109B. doi:10.1063/1.2191489. PMID 16709099.
Ross A. Lippert; Kevin J. Bowers; Ron O. Dror; Michael P. Eastwood; Brent A. Gregersen; John L. Klepeis; István Kolossváry & David E. Shaw (2007). "A Common, Avoidable Source of Error in Molecular Dynamics Integrators". Journal of Chemical Physics. 126 (4). J. Chem. Phys.: 046101:1–2. Bibcode:2007JChPh.126d6101L. doi:10.1063/1.2431176. PMID 17286520.

nih.gov

pubmed.ncbi.nlm.nih.gov

R. Car & M. Parrinello (1985). "Unified Approach for Molecular Dynamics and Density-Functional Theory". Phys. Rev. Lett. 55 (22): 2471–2474. Bibcode:1985PhRvL..55.2471C. doi:10.1103/PhysRevLett.55.2471. PMID 10032153.
Morten Ø. Jensen; David W. Borhani; Kresten Lindorff-Larsen; Paul Maragakis; Vishwanath Jogini; Michael P. Eastwood; Ron O. Dror & David E. Shaw (2010). "Principles of Conduction and Hydrophobic Gating in K+ Channels". Proceedings of the National Academy of Sciences of the United States of America. 107 (13). PNAS: 5833–5838. Bibcode:2010PNAS..107.5833J. doi:10.1073/pnas.0911691107. PMC 2851896. PMID 20231479.
Ron O. Dror; Daniel H. Arlow; David W. Borhani; Morten Ø. Jensen; Stefano Piana & David E. Shaw (2009). "Identification of Two Distinct Inactive Conformations of the ß2-Adrenergic Receptor Reconciles Structural and Biochemical Observations". Proceedings of the National Academy of Sciences of the United States of America. 106 (12). PNAS: 4689–4694. Bibcode:2009PNAS..106.4689D. doi:10.1073/pnas.0811065106. PMC 2650503. PMID 19258456.
Yibing Shan; Markus A. Seeliger; Michael P. Eastwood; Filipp Frank; Huafeng Xu; Morten Ø. Jensen; Ron O. Dror; John Kuriyan & David E. Shaw (2009). "A Conserved Protonation-Dependent Switch Controls Drug Binding in the Abl Kinase". Proceedings of the National Academy of Sciences of the United States of America. 106 (1). PNAS: 139–144. Bibcode:2009PNAS..106..139S. doi:10.1073/pnas.0811223106. PMC 2610013. PMID 19109437.
Kevin J. Bowers; Ron O. Dror & David E. Shaw (2006). "The Midpoint Method for Parallelization of Particle Simulations". Journal of Chemical Physics. 124 (18). J. Chem. Phys.: 184109:1–11. Bibcode:2006JChPh.124r4109B. doi:10.1063/1.2191489. PMID 16709099.
Ross A. Lippert; Kevin J. Bowers; Ron O. Dror; Michael P. Eastwood; Brent A. Gregersen; John L. Klepeis; István Kolossváry & David E. Shaw (2007). "A Common, Avoidable Source of Error in Molecular Dynamics Integrators". Journal of Chemical Physics. 126 (4). J. Chem. Phys.: 046101:1–2. Bibcode:2007JChPh.126d6101L. doi:10.1063/1.2431176. PMID 17286520.

ncbi.nlm.nih.gov

Morten Ø. Jensen; David W. Borhani; Kresten Lindorff-Larsen; Paul Maragakis; Vishwanath Jogini; Michael P. Eastwood; Ron O. Dror & David E. Shaw (2010). "Principles of Conduction and Hydrophobic Gating in K+ Channels". Proceedings of the National Academy of Sciences of the United States of America. 107 (13). PNAS: 5833–5838. Bibcode:2010PNAS..107.5833J. doi:10.1073/pnas.0911691107. PMC 2851896. PMID 20231479.
Ron O. Dror; Daniel H. Arlow; David W. Borhani; Morten Ø. Jensen; Stefano Piana & David E. Shaw (2009). "Identification of Two Distinct Inactive Conformations of the ß2-Adrenergic Receptor Reconciles Structural and Biochemical Observations". Proceedings of the National Academy of Sciences of the United States of America. 106 (12). PNAS: 4689–4694. Bibcode:2009PNAS..106.4689D. doi:10.1073/pnas.0811065106. PMC 2650503. PMID 19258456.
Yibing Shan; Markus A. Seeliger; Michael P. Eastwood; Filipp Frank; Huafeng Xu; Morten Ø. Jensen; Ron O. Dror; John Kuriyan & David E. Shaw (2009). "A Conserved Protonation-Dependent Switch Controls Drug Binding in the Abl Kinase". Proceedings of the National Academy of Sciences of the United States of America. 106 (1). PNAS: 139–144. Bibcode:2009PNAS..106..139S. doi:10.1073/pnas.0811223106. PMC 2610013. PMID 19109437.

sourceforge.net

protomol.sourceforge.net

"ProtoMol". Retrieved 2011-08-24.

stanford.edu

folding.stanford.edu

Vijay Pande (2005-10-16). "Folding@home with QMD core FAQ" (FAQ). Stanford University. Retrieved 2006-12-03. The site indicates that Folding@home uses a modification of CPMD allowing it to run on the supercluster environment.
Vijay Pande (2011). "ATI FAQ: Are these WUs compatible with other fahcores?". Archived from the original (FAQ) on 2012-10-28. Retrieved 2011-08-23.
"Folding@home on ATI's GPUs: a major step forward". 2011. Archived from the original on 2012-10-28. Retrieved 2011-08-28.
"Gromacs FAQ". 2007. Archived from the original (FAQ) on 2012-07-17. Retrieved 2011-09-03.
"SMP FAQ". 2011. Archived from the original (FAQ) on 2012-09-22. Retrieved 2011-08-22.
"PS3 FAQ". 2009. Archived from the original on 2008-09-12. Retrieved 2011-08-28.
"QMD FAQ" (FAQ). 2007. Retrieved 2011-08-28.
"Folding@home - About" (FAQ). 2010-07-26.

stanford.edu

"PS3 Screenshot". 2007. Retrieved 2011-08-24.
"Folding@Home with AMBER FAQ" (FAQ). 2004. Retrieved 2011-08-23.

supercomputing.org

sc06.supercomputing.org

Kevin J. Bowers; Edmond Chow; Huafeng Xu; Ron O. Dror; Michael P. Eastwood; Brent A. Gregersen; John L. Klepeis; István Kolossváry; Mark A. Moraes; Federico D. Sacerdoti; John K. Salmon; Yibing Shan & David E. Shaw (2006). "Scalable Algorithms for Molecular Dynamics Simulations on Commodity Clusters" (PDF). ACM/IEEE SC 2006 Conference (SC'06). ACM. p. 43. doi:10.1109/SC.2006.54. ISBN 0-7695-2700-0.

typepad.com

folding.typepad.com

Vijay Pande (2009-06-17). "Folding@home: How does FAH code development and sysadmin get done?". Retrieved 2009-06-25.
Vijay Pande (2009). "Update on new FAH cores and clients". Retrieved 2011-08-23.
"Introduction of a new SMP core, changes to bigadv". 2011. Retrieved 2011-08-24.
"FAH Support for ATI GPUs". 2011. Retrieved 2011-08-31.
"GPU Core 17". 2014. Retrieved 2014-07-12.

web.archive.org

"New Client with ARM Support". 24 November 2020. Archived from the original on 2024-06-19.
Vijay Pande (2011). "ATI FAQ: Are these WUs compatible with other fahcores?". Archived from the original (FAQ) on 2012-10-28. Retrieved 2011-08-23.
"Tinker Core". 2011. Archived from the original on December 18, 2005. Retrieved 2012-08-24.
"Folding@home on ATI's GPUs: a major step forward". 2011. Archived from the original on 2012-10-28. Retrieved 2011-08-28.
"GPU core". 2011. Archived from the original on December 18, 2005. Retrieved 2011-08-28.
"Gromacs FAQ". 2007. Archived from the original (FAQ) on 2012-07-17. Retrieved 2011-09-03.
"SMP FAQ". 2011. Archived from the original (FAQ) on 2012-09-22. Retrieved 2011-08-22.
"Gromacs SMP core". 2011. Archived from the original on December 18, 2005. Retrieved 2011-08-28.
"Gromacs CVS SMP core". 2011. Archived from the original on December 18, 2005. Retrieved 2011-08-28.
"PS3 Client". 2008. Archived from the original on May 5, 2007. Retrieved 2011-08-28.
"PS3 FAQ". 2009. Archived from the original on 2008-09-12. Retrieved 2011-08-28.
"Gromacs Core". 2011. Archived from the original on December 18, 2005. Retrieved 2011-08-21.
"Double Gromacs Core". 2011. Archived from the original on December 18, 2005. Retrieved 2011-08-22.
"Double Gromacs B Core". 2011. Archived from the original on December 18, 2005. Retrieved 2011-08-22.
"Double Gromacs C Core". 2011. Archived from the original on December 18, 2005. Retrieved 2011-08-22.
"Gromacs CVS SMP2 bigadv Core". 2011. Archived from the original on December 18, 2005. Retrieved 2011-08-22.
"QMD Core". 2011. Archived from the original on December 18, 2005. Retrieved 2011-08-24.
"FAH & QMD & AMD64 & SSE2". Archived from the original on January 12, 2006.
"SHARPEN". Archived from the original on December 2, 2008.
"SHARPEN: Systematic Hierarchical Algorithms for Rotamers and Proteins on an Extended Network (deadlink)". Archived from the original (About) on December 1, 2008.
"Desmond core". Archived from the original on December 18, 2005. Retrieved 2011-08-24.
"AMBER Core". 2011. Archived from the original on December 18, 2005. Retrieved 2011-08-23.
"ProtoMol core". 2011. Archived from the original on December 18, 2005. Retrieved 2011-08-24.
"GPU2 Core". 2011. Archived from the original on December 18, 2005. Retrieved 2011-08-23.
"GPU3 Core". 2011. Archived from the original on December 18, 2005. Retrieved 2011-08-23.

wustl.edu

dasher.wustl.edu

"TINKER Home Page". Retrieved 2012-08-24.