List of molecular graphics systems (English Wikipedia)

Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE (October 2004). "UCSF Chimera--a visualization system for exploratory research and analysis". Journal of Computational Chemistry. 25 (13): 1605–12. Bibcode:2004JCoCh..25.1605P. doi:10.1002/jcc.20084. PMID 15264254. S2CID 8747218.

amira.com (Global: low place; English: low place)

"Amira for Life & Biomedical Sciences". 2019-02-28. Retrieved February 28, 2019.

avizo3d.com (Global: low place; English: low place)

"Avizo, the 3D Visualization and Analysis Software for Scientific and Industrial Data". 2018-09-26. Retrieved August 5, 2010.

biomolecular-modeling.com (Global: low place; English: low place)

"Ascalaph". Retrieved 24 September 2009.

doi.org (Global: 2^nd place; English: 2^nd place)

O'Donoghue SI, Goodsell DS, Frangakis AS, Jossinet F, Laskowski RA, Nilges M, et al. (March 2010). "Visualization of macromolecular structures". Nature Methods. 7 (3 Suppl): S42-55. doi:10.1038/nmeth.1427. PMC 7097155. PMID 20195256.
Hildebrandt, Andreas (25 October 2010). "BALL - biochemical algorithms library 1.3". BMC Bioinformatics. 11 531. doi:10.1186/1471-2105-11-531. PMC 2984589. PMID 20973958.
Wang Y, Geer LY, Chappey C, Kans JA, Bryant SH (June 2000). "Cn3D: sequence and structure views for Entrez". Trends in Biochemical Sciences. 25 (6): 300–2. doi:10.1016/S0968-0004(00)01561-9. PMID 10838572.
Sehnal, David; Bittrich, Sebastian; Deshpande, Mandar; Svobodová, Radka; Berka, Karel; Bazgier, Václav; Velankar, Sameer; Burley, Stephen K.; Koča, Jaroslav; Rose, Alexander S. (2021-07-02). "Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures". Nucleic Acids Research. 49 (W1): W431–W437. doi:10.1093/nar/gkab314. ISSN 1362-4962. PMC 8262734. PMID 33956157.
Sayle RA, Milner-White EJ (September 1995). "RASMOL: biomolecular graphics for all". Trends in Biochemical Sciences. 20 (9): 374–376. doi:10.1016/S0968-0004(00)89080-5. PMID 7482707.
Bernstein HJ (September 2000). "Recent changes to RasMol, recombining the variants". Trends in Biochemical Sciences. 25 (9): 453–5. doi:10.1016/S0968-0004(00)01606-6. PMID 10973060.
Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE (October 2004). "UCSF Chimera--a visualization system for exploratory research and analysis". Journal of Computational Chemistry. 25 (13): 1605–12. Bibcode:2004JCoCh..25.1605P. doi:10.1002/jcc.20084. PMID 15264254. S2CID 8747218.
Meng EC, Pettersen EF, Couch GS, Huang CC, Ferrin TE (July 2006). "Tools for integrated sequence-structure analysis with UCSF Chimera". BMC Bioinformatics. 7 339. doi:10.1186/1471-2105-7-339. PMC 1570152. PMID 16836757.
Humphrey W, Dalke A, Schulten K (February 1996). "VMD: visual molecular dynamics". Journal of Molecular Graphics. 14 (1): 33–8, 27–8. doi:10.1016/0263-7855(96)00018-5. PMID 8744570.

fqs.pl (Global: low place; English: low place)

"Scigress". fqs.pl. 12 September 2014.

github.com (Global: 380^th place; English: 337^th place)

"FriendsofECCE/ECCE". GitHub.
"PyMOL License". GitHub. Jan 8, 2010. Retrieved 2023-03-27.

jmol.org (Global: low place; English: low place)

"Jmol: an open-source Java viewer for chemical structures in 3D". Retrieved 24 September 2009.

nih.gov (Global: 5^th place; English: 5^th place)

pubmed.ncbi.nlm.nih.gov

O'Donoghue SI, Goodsell DS, Frangakis AS, Jossinet F, Laskowski RA, Nilges M, et al. (March 2010). "Visualization of macromolecular structures". Nature Methods. 7 (3 Suppl): S42-55. doi:10.1038/nmeth.1427. PMC 7097155. PMID 20195256.
Hildebrandt, Andreas (25 October 2010). "BALL - biochemical algorithms library 1.3". BMC Bioinformatics. 11 531. doi:10.1186/1471-2105-11-531. PMC 2984589. PMID 20973958.
Wang Y, Geer LY, Chappey C, Kans JA, Bryant SH (June 2000). "Cn3D: sequence and structure views for Entrez". Trends in Biochemical Sciences. 25 (6): 300–2. doi:10.1016/S0968-0004(00)01561-9. PMID 10838572.
Sehnal, David; Bittrich, Sebastian; Deshpande, Mandar; Svobodová, Radka; Berka, Karel; Bazgier, Václav; Velankar, Sameer; Burley, Stephen K.; Koča, Jaroslav; Rose, Alexander S. (2021-07-02). "Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures". Nucleic Acids Research. 49 (W1): W431–W437. doi:10.1093/nar/gkab314. ISSN 1362-4962. PMC 8262734. PMID 33956157.
Sayle RA, Milner-White EJ (September 1995). "RASMOL: biomolecular graphics for all". Trends in Biochemical Sciences. 20 (9): 374–376. doi:10.1016/S0968-0004(00)89080-5. PMID 7482707.
Bernstein HJ (September 2000). "Recent changes to RasMol, recombining the variants". Trends in Biochemical Sciences. 25 (9): 453–5. doi:10.1016/S0968-0004(00)01606-6. PMID 10973060.
Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE (October 2004). "UCSF Chimera--a visualization system for exploratory research and analysis". Journal of Computational Chemistry. 25 (13): 1605–12. Bibcode:2004JCoCh..25.1605P. doi:10.1002/jcc.20084. PMID 15264254. S2CID 8747218.
Meng EC, Pettersen EF, Couch GS, Huang CC, Ferrin TE (July 2006). "Tools for integrated sequence-structure analysis with UCSF Chimera". BMC Bioinformatics. 7 339. doi:10.1186/1471-2105-7-339. PMC 1570152. PMID 16836757.
Humphrey W, Dalke A, Schulten K (February 1996). "VMD: visual molecular dynamics". Journal of Molecular Graphics. 14 (1): 33–8, 27–8. doi:10.1016/0263-7855(96)00018-5. PMID 8744570.

ncbi.nlm.nih.gov

O'Donoghue SI, Goodsell DS, Frangakis AS, Jossinet F, Laskowski RA, Nilges M, et al. (March 2010). "Visualization of macromolecular structures". Nature Methods. 7 (3 Suppl): S42-55. doi:10.1038/nmeth.1427. PMC 7097155. PMID 20195256.
Hildebrandt, Andreas (25 October 2010). "BALL - biochemical algorithms library 1.3". BMC Bioinformatics. 11 531. doi:10.1186/1471-2105-11-531. PMC 2984589. PMID 20973958.
Sehnal, David; Bittrich, Sebastian; Deshpande, Mandar; Svobodová, Radka; Berka, Karel; Bazgier, Václav; Velankar, Sameer; Burley, Stephen K.; Koča, Jaroslav; Rose, Alexander S. (2021-07-02). "Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures". Nucleic Acids Research. 49 (W1): W431–W437. doi:10.1093/nar/gkab314. ISSN 1362-4962. PMC 8262734. PMID 33956157.
Meng EC, Pettersen EF, Couch GS, Huang CC, Ferrin TE (July 2006). "Tools for integrated sequence-structure analysis with UCSF Chimera". BMC Bioinformatics. 7 339. doi:10.1186/1471-2105-7-339. PMC 1570152. PMID 16836757.

pymol.org (Global: low place; English: low place)

"PyMOL Molecular Viewer". Retrieved 24 September 2009.

rasmol.org (Global: low place; English: low place)

"Home Page for RasMol and OpenRasMol". Retrieved 24 September 2009.

ru.nl (Global: 7,619^th place; English: 6,271^st place)

cmbi.ru.nl

"Molden a visualization program of molecular and electronic structure".

swift.cmbi.ru.nl

"WHAT IF homepage". Retrieved 24 September 2009.

samson-connect.net (Global: low place; English: low place)

SAMSON Connect

scigress.com (Global: low place; English: low place)

Scigress commercial license

semanticscholar.org (Global: 15^th place; English: 8^th place)

api.semanticscholar.org

Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE (October 2004). "UCSF Chimera--a visualization system for exploratory research and analysis". Journal of Computational Chemistry. 25 (13): 1605–12. Bibcode:2004JCoCh..25.1605P. doi:10.1002/jcc.20084. PMID 15264254. S2CID 8747218.

sourceforge.net (Global: 1,842^nd place; English: 1,520^th place)

gabedit.sourceforge.net

"Gabedit A graphical user interface for computational chemistry packages".

symyx.com (Global: low place; English: low place)

"Chime Pro". Symx. Retrieved 24 September 2009.

ucsf.edu (Global: 6,216^th place; English: 3,860^th place)

cgl.ucsf.edu

UCSF Chimera license
"UCSF Chimera". Retrieved 24 September 2009.

rbvi.ucsf.edu

"UCSF Chimera code repository". www.rbvi.ucsf.edu. Retrieved 2023-03-27.

uiuc.edu (Global: 4,225^th place; English: 3,432^nd place)

ks.uiuc.edu

Visual Molecular Dynamics license
"VMD - Visual Molecular Dynamics". Retrieved 24 September 2009.

vsg3d.com (Global: low place; English: low place)

wavefun.com (Global: low place; English: low place)

wavefun.com

Spartan webpage

downloads.wavefun.com

Spartan Tutorial & User's Guide ISBN 1-890661-38-4

worldcat.org (Global: 4^th place; English: 4^th place)

search.worldcat.org

Sehnal, David; Bittrich, Sebastian; Deshpande, Mandar; Svobodová, Radka; Berka, Karel; Bazgier, Václav; Velankar, Sameer; Burley, Stephen K.; Koča, Jaroslav; Rose, Alexander S. (2021-07-02). "Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures". Nucleic Acids Research. 49 (W1): W431–W437. doi:10.1093/nar/gkab314. ISSN 1362-4962. PMC 8262734. PMID 33956157.

yasara.org (Global: low place; English: low place)

"YASARA – Yet Another Scientific Artificial Reality Application". Retrieved 24 September 2009.

List of molecular graphics systems (English Wikipedia)

adsabs.harvard.edu (Global: 14th place; English: 9th place)

ui.adsabs.harvard.edu

amira.com (Global: low place; English: low place)

avizo3d.com (Global: low place; English: low place)

biomolecular-modeling.com (Global: low place; English: low place)

doi.org (Global: 2nd place; English: 2nd place)

fqs.pl (Global: low place; English: low place)

github.com (Global: 380th place; English: 337th place)

jmol.org (Global: low place; English: low place)

nih.gov (Global: 5th place; English: 5th place)

pubmed.ncbi.nlm.nih.gov

ncbi.nlm.nih.gov

pymol.org (Global: low place; English: low place)

rasmol.org (Global: low place; English: low place)

ru.nl (Global: 7,619th place; English: 6,271st place)

cmbi.ru.nl

swift.cmbi.ru.nl

samson-connect.net (Global: low place; English: low place)

scigress.com (Global: low place; English: low place)

semanticscholar.org (Global: 15th place; English: 8th place)

api.semanticscholar.org

sourceforge.net (Global: 1,842nd place; English: 1,520th place)

gabedit.sourceforge.net

symyx.com (Global: low place; English: low place)

ucsf.edu (Global: 6,216th place; English: 3,860th place)

cgl.ucsf.edu

rbvi.ucsf.edu

uiuc.edu (Global: 4,225th place; English: 3,432nd place)

ks.uiuc.edu

vsg3d.com (Global: low place; English: low place)

wavefun.com (Global: low place; English: low place)

wavefun.com

downloads.wavefun.com

worldcat.org (Global: 4th place; English: 4th place)

search.worldcat.org

yasara.org (Global: low place; English: low place)

adsabs.harvard.edu (Global: 14^th place; English: 9^th place)

doi.org (Global: 2^nd place; English: 2^nd place)

github.com (Global: 380^th place; English: 337^th place)

nih.gov (Global: 5^th place; English: 5^th place)

ru.nl (Global: 7,619^th place; English: 6,271^st place)

semanticscholar.org (Global: 15^th place; English: 8^th place)

sourceforge.net (Global: 1,842^nd place; English: 1,520^th place)

ucsf.edu (Global: 6,216^th place; English: 3,860^th place)

uiuc.edu (Global: 4,225^th place; English: 3,432^nd place)

worldcat.org (Global: 4^th place; English: 4^th place)