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List of molecular graphics systems (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "List of molecular graphics systems" in English language version.

refsWebsite
Global rank English rank
14nih.gov
4th place
4th place
9doi.org
2nd place
2nd place
3ucsf.edu
5,479th place
3,911th place
2vsg3d.com
low place
low place
2uiuc.edu
3,087th place
2,519th place
2ru.nl
9,179th place
6,972nd place
2wavefun.com
low place
low place
1amira.com
low place
low place
1biomolecular-modeling.com
low place
low place
1avizo3d.com
low place
low place
1sourceforge.net
1,669th place
1,290th place
1jmol.org
low place
low place
1symyx.com
low place
low place
1worldcat.org
5th place
5th place
1github.com
383rd place
320th place
1pymol.org
low place
low place
1rasmol.org
low place
low place
1samson-connect.net
low place
low place
1scigress.com
low place
low place
1fqs.pl
low place
low place
1psu.edu
207th place
136th place
1semanticscholar.org
11th place
8th place
1yasara.org
low place
low place

amira.com (Global: low place; English: low place)

avizo3d.com (Global: low place; English: low place)

biomolecular-modeling.com (Global: low place; English: low place)

doi.org (Global: 2nd place; English: 2nd place)

  • O'Donoghue SI, Goodsell DS, Frangakis AS, Jossinet F, Laskowski RA, Nilges M, et al. (March 2010). "Visualization of macromolecular structures". Nature Methods. 7 (3 Suppl): S42-55. doi:10.1038/nmeth.1427. PMC 7097155. PMID 20195256.
  • Hildebrandt, Andreas (25 October 2010). "BALL - biochemical algorithms library 1.3". BMC Bioinformatics. 11: 531. doi:10.1186/1471-2105-11-531. PMC 2984589. PMID 20973958.
  • Wang Y, Geer LY, Chappey C, Kans JA, Bryant SH (June 2000). "Cn3D: sequence and structure views for Entrez". Trends in Biochemical Sciences. 25 (6): 300–2. doi:10.1016/S0968-0004(00)01561-9. PMID 10838572.
  • Sehnal, David; Bittrich, Sebastian; Deshpande, Mandar; Svobodová, Radka; Berka, Karel; Bazgier, Václav; Velankar, Sameer; Burley, Stephen K.; Koča, Jaroslav; Rose, Alexander S. (2021-07-02). "Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures". Nucleic Acids Research. 49 (W1): W431 – W437. doi:10.1093/nar/gkab314. ISSN 1362-4962. PMC 8262734. PMID 33956157.
  • Sayle RA, Milner-White EJ (September 1995). "RASMOL: biomolecular graphics for all". Trends in Biochemical Sciences. 20 (9): 374–376. doi:10.1016/S0968-0004(00)89080-5. PMID 7482707.
  • Bernstein HJ (September 2000). "Recent changes to RasMol, recombining the variants". Trends in Biochemical Sciences. 25 (9): 453–5. doi:10.1016/S0968-0004(00)01606-6. PMID 10973060.
  • Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE (October 2004). "UCSF Chimera--a visualization system for exploratory research and analysis". Journal of Computational Chemistry. 25 (13): 1605–12. CiteSeerX 10.1.1.456.9442. doi:10.1002/jcc.20084. PMID 15264254. S2CID 8747218.
  • Meng EC, Pettersen EF, Couch GS, Huang CC, Ferrin TE (July 2006). "Tools for integrated sequence-structure analysis with UCSF Chimera". BMC Bioinformatics. 7: 339. doi:10.1186/1471-2105-7-339. PMC 1570152. PMID 16836757.
  • Humphrey W, Dalke A, Schulten K (February 1996). "VMD: visual molecular dynamics". Journal of Molecular Graphics. 14 (1): 33–8, 27–8. doi:10.1016/0263-7855(96)00018-5. PMID 8744570.

fqs.pl (Global: low place; English: low place)

github.com (Global: 383rd place; English: 320th place)

jmol.org (Global: low place; English: low place)

nih.gov (Global: 4th place; English: 4th place)

pubmed.ncbi.nlm.nih.gov

  • O'Donoghue SI, Goodsell DS, Frangakis AS, Jossinet F, Laskowski RA, Nilges M, et al. (March 2010). "Visualization of macromolecular structures". Nature Methods. 7 (3 Suppl): S42-55. doi:10.1038/nmeth.1427. PMC 7097155. PMID 20195256.
  • Hildebrandt, Andreas (25 October 2010). "BALL - biochemical algorithms library 1.3". BMC Bioinformatics. 11: 531. doi:10.1186/1471-2105-11-531. PMC 2984589. PMID 20973958.
  • Wang Y, Geer LY, Chappey C, Kans JA, Bryant SH (June 2000). "Cn3D: sequence and structure views for Entrez". Trends in Biochemical Sciences. 25 (6): 300–2. doi:10.1016/S0968-0004(00)01561-9. PMID 10838572.
  • Sehnal, David; Bittrich, Sebastian; Deshpande, Mandar; Svobodová, Radka; Berka, Karel; Bazgier, Václav; Velankar, Sameer; Burley, Stephen K.; Koča, Jaroslav; Rose, Alexander S. (2021-07-02). "Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures". Nucleic Acids Research. 49 (W1): W431 – W437. doi:10.1093/nar/gkab314. ISSN 1362-4962. PMC 8262734. PMID 33956157.
  • Sayle RA, Milner-White EJ (September 1995). "RASMOL: biomolecular graphics for all". Trends in Biochemical Sciences. 20 (9): 374–376. doi:10.1016/S0968-0004(00)89080-5. PMID 7482707.
  • Bernstein HJ (September 2000). "Recent changes to RasMol, recombining the variants". Trends in Biochemical Sciences. 25 (9): 453–5. doi:10.1016/S0968-0004(00)01606-6. PMID 10973060.
  • Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE (October 2004). "UCSF Chimera--a visualization system for exploratory research and analysis". Journal of Computational Chemistry. 25 (13): 1605–12. CiteSeerX 10.1.1.456.9442. doi:10.1002/jcc.20084. PMID 15264254. S2CID 8747218.
  • Meng EC, Pettersen EF, Couch GS, Huang CC, Ferrin TE (July 2006). "Tools for integrated sequence-structure analysis with UCSF Chimera". BMC Bioinformatics. 7: 339. doi:10.1186/1471-2105-7-339. PMC 1570152. PMID 16836757.
  • Humphrey W, Dalke A, Schulten K (February 1996). "VMD: visual molecular dynamics". Journal of Molecular Graphics. 14 (1): 33–8, 27–8. doi:10.1016/0263-7855(96)00018-5. PMID 8744570.

ncbi.nlm.nih.gov

  • O'Donoghue SI, Goodsell DS, Frangakis AS, Jossinet F, Laskowski RA, Nilges M, et al. (March 2010). "Visualization of macromolecular structures". Nature Methods. 7 (3 Suppl): S42-55. doi:10.1038/nmeth.1427. PMC 7097155. PMID 20195256.
  • Hildebrandt, Andreas (25 October 2010). "BALL - biochemical algorithms library 1.3". BMC Bioinformatics. 11: 531. doi:10.1186/1471-2105-11-531. PMC 2984589. PMID 20973958.
  • Sehnal, David; Bittrich, Sebastian; Deshpande, Mandar; Svobodová, Radka; Berka, Karel; Bazgier, Václav; Velankar, Sameer; Burley, Stephen K.; Koča, Jaroslav; Rose, Alexander S. (2021-07-02). "Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures". Nucleic Acids Research. 49 (W1): W431 – W437. doi:10.1093/nar/gkab314. ISSN 1362-4962. PMC 8262734. PMID 33956157.
  • Meng EC, Pettersen EF, Couch GS, Huang CC, Ferrin TE (July 2006). "Tools for integrated sequence-structure analysis with UCSF Chimera". BMC Bioinformatics. 7: 339. doi:10.1186/1471-2105-7-339. PMC 1570152. PMID 16836757.

pmc.ncbi.nlm.nih.gov

psu.edu (Global: 207th place; English: 136th place)

citeseerx.ist.psu.edu

pymol.org (Global: low place; English: low place)

rasmol.org (Global: low place; English: low place)

ru.nl (Global: 9,179th place; English: 6,972nd place)

cmbi.ru.nl

swift.cmbi.ru.nl

samson-connect.net (Global: low place; English: low place)

scigress.com (Global: low place; English: low place)

semanticscholar.org (Global: 11th place; English: 8th place)

api.semanticscholar.org

sourceforge.net (Global: 1,669th place; English: 1,290th place)

gabedit.sourceforge.net

symyx.com (Global: low place; English: low place)

ucsf.edu (Global: 5,479th place; English: 3,911th place)

cgl.ucsf.edu

rbvi.ucsf.edu

uiuc.edu (Global: 3,087th place; English: 2,519th place)

ks.uiuc.edu

vsg3d.com (Global: low place; English: low place)

wavefun.com (Global: low place; English: low place)

wavefun.com

downloads.wavefun.com

worldcat.org (Global: 5th place; English: 5th place)

search.worldcat.org

yasara.org (Global: low place; English: low place)