List of sequenced fungi genomes (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "List of sequenced fungi genomes" in English language version.

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142nih.gov

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3diark.org

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broadinstitute.org

"Chaetomium globosum Genome Project". broadinstitute.org. 15 May 2015. Retrieved 24 November 2018.
http://www.broadinstitute.org/annotation/genome/puccinia_group/MultiHome.html Broad Institute
"Batrachochytrium Genome Project". broadinstitute.org. 25 August 2016. Retrieved 24 November 2018.
"Update for our Microbial Eukaryotes website users". broadinstitute.org. 29 February 2016. Retrieved 24 November 2018.

diark.org

Team, diArk. "diArk - species_list". www.diark.org. Retrieved 24 November 2018.
"DiArk | species_list".
Team, diArk. "diArk - species_list". www.diark.org. Retrieved 24 November 2018.

doe.gov

genome.jgi.doe.gov

"Home - Melampsora larici-populina v1.0". genome.jgi.doe.gov. Retrieved 24 November 2018.
"Home - Batrachochytrium dendrobatidis JAM81 v1.0". genome.jgi.doe.gov. Retrieved 24 November 2018.
"Home - Gonapodya prolifera v1.0". genome.jgi.doe.gov. Retrieved 24 November 2018.
"Home - Catenaria anguillulae PL171 v1.0". genome.jgi.doe.gov. Retrieved 24 November 2018.

doi.org

Gostinčar C, Ohm RA, Kogej T, Sonjak S, Turk M, Zajc J, et al. (July 2014). "Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species". BMC Genomics. 15 (1): 549. doi:10.1186/1471-2164-15-549. PMC 4227064. PMID 24984952.
Lenassi M, Gostinčar C, Jackman S, Turk M, Sadowski I, Nislow C, et al. (2013). "Whole genome duplication and enrichment of metal cation transporters revealed by de novo genome sequencing of extremely halotolerant black yeast Hortaea werneckii". PLOS ONE. 8 (8): e71328. Bibcode:2013PLoSO...871328L. doi:10.1371/journal.pone.0071328. PMC 3744574. PMID 23977017.
Nislow, Corey; Stajich, Jason E.; Gostinčar, Cene; Lenassi, Metka; Cimerman, Nina Gunde; Plemenitaš, Ana; Formby, Sean; Neira, Mauricio; Flibotte, Stephane (2017-07-01). "Insight into the Recent Genome Duplication of the Halophilic Yeast Hortaea werneckii: Combining an Improved Genome with Gene Expression and Chromatin Structure". G3: Genes, Genomes, Genetics. 7 (7): 2015–2022. doi:10.1534/g3.117.040691. ISSN 2160-1836. PMC 5499112. PMID 28500048.
Rouxel T, Grandaubert J, Hane JK, Hoede C, van de Wouw AP, Couloux A, et al. (February 2011). "Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations". Nature Communications. 2 (2): 202. Bibcode:2011NatCo...2..202R. doi:10.1038/ncomms1189. PMC 3105345. PMID 21326234.
Islam MS, Haque MS, Islam MM, Emdad EM, Halim A, Hossen QM, et al. (September 2012). "Tools to kill: genome of one of the most destructive plant pathogenic fungi Macrophomina phaseolina". BMC Genomics. 13 (1): 493. doi:10.1186/1471-2164-13-493. PMC 3477038. PMID 22992219.
Goodwin SB, M'barek SB, Dhillon B, Wittenberg AH, Crane CF, Hane JK, et al. (June 2011). "Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis". PLOS Genetics. 7 (6): e1002070. doi:10.1371/journal.pgen.1002070. PMC 3111534. PMID 21695235.
Hane JK, Lowe RG, Solomon PS, Tan KC, Schoch CL, Spatafora JW, et al. (November 2007). "Dothideomycete plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum". The Plant Cell. 19 (11): 3347–68. doi:10.1105/tpc.107.052829. PMC 2174895. PMID 18024570.
Martinez DA, Oliver BG, Gräser Y, Goldberg JM, Li W, Martinez-Rossi NM, et al. (2012). "Comparative genome analysis of Trichophyton rubrum and related dermatophytes reveals candidate genes involved in infection". mBio. 3 (5): e00259-12. doi:10.1128/mBio.00259-12. PMC 3445971. PMID 22951933.
Fedorova ND, Khaldi N, Joardar VS, Maiti R, Amedeo P, Anderson MJ, et al. (April 2008). "Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus". PLOS Genetics. 4 (4): e1000046. doi:10.1371/journal.pgen.1000046. PMC 2289846. PMID 18404212.
Nierman WC, Pain A, Anderson MJ, Wortman JR, Kim HS, Arroyo J, et al. (December 2005). "Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus". Nature. 438 (7071): 1151–6. Bibcode:2005Natur.438.1151N. doi:10.1038/nature04332. hdl:10261/71531. PMID 16372009.
Futagami T, Mori K, Yamashita A, Wada S, Kajiwara Y, Takashita H, et al. (November 2011). "Genome sequence of the white koji mold Aspergillus kawachii IFO 4308, used for brewing the Japanese distilled spirit shochu". Eukaryotic Cell. 10 (11): 1586–7. doi:10.1128/EC.05224-11. PMC 3209066. PMID 22045919.
Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, Batzoglou S, et al. (December 2005). "Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae". Nature. 438 (7071): 1105–15. Bibcode:2005Natur.438.1105G. doi:10.1038/nature04341. PMID 16372000.
Pel HJ, de Winde JH, Archer DB, Dyer PS, Hofmann G, Schaap PJ, et al. (February 2007). "Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88". Nature Biotechnology. 25 (2): 221–31. doi:10.1038/nbt1282. hdl:1887/67447. PMID 17259976.
Machida M, Asai K, Sano M, Tanaka T, Kumagai T, Terai G, et al. (December 2005). "Genome sequencing and analysis of Aspergillus oryzae" (PDF). Nature. 438 (7071): 1157–61. Bibcode:2005Natur.438.1157M. doi:10.1038/nature04300. PMID 16372010.
Sharpton TJ, Stajich JE, Rounsley SD, Gardner MJ, Wortman JR, Jordar VS, et al. (October 2009). "Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives". Genome Research. 19 (10): 1722–31. doi:10.1101/gr.087551.108. PMC 2765278. PMID 19717792.
Desjardins CA, Champion MD, Holder JW, Muszewska A, Goldberg J, Bailão AM, et al. (October 2011). "Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis". PLOS Genetics. 7 (10): e1002345. doi:10.1371/journal.pgen.1002345. PMC 3203195. PMID 22046142.
van den Berg MA, Albang R, Albermann K, Badger JH, Daran JM, Driessen AJ, et al. (October 2008). "Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum" (PDF). Nature Biotechnology. 26 (10): 1161–8. doi:10.1038/nbt.1498. PMID 18820685.
Marcet-Houben M, Ballester AR, de la Fuente B, Harries E, Marcos JF, González-Candelas L, Gabaldón T (November 2012). "Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus". BMC Genomics. 13: 646. doi:10.1186/1471-2164-13-646. PMC 3532085. PMID 23171342.
Woo PC, Lau SK, Liu B, Cai JJ, Chong KT, Tse H, et al. (December 2011). "Draft genome sequence of Penicillium marneffei strain PM1". Eukaryotic Cell. 10 (12): 1740–1. doi:10.1128/EC.05255-11. PMC 3232717. PMID 22131218.
Amselem J, Cuomo CA, van Kan JA, Viaud M, Benito EP, Couloux A, et al. (August 2011). "Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea". PLOS Genetics. 7 (8): e1002230. doi:10.1371/journal.pgen.1002230. PMC 3158057. PMID 21876677.
Youssar L, Grüning BA, Erxleben A, Günther S, Hüttel W (February 2012). "Genome sequence of the fungus Glarea lozoyensis: the first genome sequence of a species from the Helotiaceae family". Eukaryotic Cell. 11 (2): 250. doi:10.1128/EC.05302-11. PMC 3272893. PMID 22302591.
Gianoulis TA, Griffin MA, Spakowicz DJ, Dunican BF, Alpha CJ, Sboner A, et al. (2012). "Genomic analysis of the hydrocarbon-producing, cellulolytic, endophytic fungus Ascocoryne sarcoides". PLOS Genetics. 8 (3): e1002558. doi:10.1371/journal.pgen.1002558. PMC 3291568. PMID 22396667.
Sossah FL, Liu Z, Yang C, Okorley BA, Sun L, Fu Y, Li Y (February 2019). "Cladobotryum protrusum Provides Insights into the Evolution and Pathogenic Mechanisms of the Cobweb Disease Pathogen on Cultivated Mushroom". Genes. 10 (2): 124. doi:10.3390/genes10020124. PMC 6409746. PMID 30744046.
Martin F, Kohler A, Murat C, Balestrini R, Coutinho PM, Jaillon O, et al. (April 2010). "Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis". Nature. 464 (7291): 1033–8. Bibcode:2010Natur.464.1033M. doi:10.1038/nature08867. hdl:2318/100278. PMID 20348908.
Dietrich FS, Voegeli S, Brachat S, Lerch A, Gates K, Steiner S, et al. (April 2004). "The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome". Science. 304 (5668): 304–7. Bibcode:2004Sci...304..304D. doi:10.1126/science.1095781. PMID 15001715. S2CID 26130646.
Jones T, Federspiel NA, Chibana H, Dungan J, Kalman S, Magee BB, et al. (May 2004). "The diploid genome sequence of Candida albicans". Proceedings of the National Academy of Sciences of the United States of America. 101 (19): 7329–34. Bibcode:2004PNAS..101.7329J. doi:10.1073/pnas.0401648101. PMC 409918. PMID 15123810.
Butler G, Rasmussen MD, Lin MF, Santos MA, Sakthikumar S, Munro CA, et al. (June 2009). "Evolution of pathogenicity and sexual reproduction in eight Candida genomes". Nature. 459 (7247): 657–62. Bibcode:2009Natur.459..657B. doi:10.1038/nature08064. PMC 2834264. PMID 19465905.
Dujon B, Sherman D, Fischer G, Durrens P, Casaregola S, Lafontaine I, et al. (July 2004). "Genome evolution in yeasts". Nature. 430 (6995): 35–44. Bibcode:2004Natur.430...35D. doi:10.1038/nature02579. PMID 15229592. S2CID 4399964.
Riccombeni A, Vidanes G, Proux-Wéra E, Wolfe KH, Butler G (2012). "Sequence and analysis of the genome of the pathogenic yeast Candida orthopsilosis". PLOS ONE. 7 (4): e35750. Bibcode:2012PLoSO...735750R. doi:10.1371/journal.pone.0035750. PMC 3338533. PMID 22563396.
Kumar S, Randhawa A, Ganesan K, Raghava GP, Mondal AK (July 2012). "Draft genome sequence of salt-tolerant yeast Debaryomyces hansenii var. hansenii MTCC 234". Eukaryotic Cell. 11 (7): 961–2. doi:10.1128/EC.00137-12. PMC 3416502. PMID 22744717.
Piškur J, Ling Z, Marcet-Houben M, Ishchuk OP, Aerts A, LaButti K, et al. (July 2012). "The genome of wine yeast Dekkera bruxellensis provides a tool to explore its food-related properties". International Journal of Food Microbiology. 157 (2): 202–9. doi:10.1016/j.ijfoodmicro.2012.05.008. PMID 22663979. S2CID 5098170.
Souciet JL, Dujon B, Gaillardin C, Johnston M, Baret PV, Cliften P, et al. (October 2009). "Comparative genomics of protoploid Saccharomycetaceae". Genome Research. 19 (10): 1696–709. doi:10.1101/gr.091546.109. PMC 2765284. PMID 19525356.
Cliften P, Sudarsanam P, Desikan A, Fulton L, Fulton B, Majors J, et al. (July 2003). "Finding functional features in Saccharomyces genomes by phylogenetic footprinting". Science. 301 (5629): 71–6. Bibcode:2003Sci...301...71C. doi:10.1126/science.1084337. PMID 12775844. S2CID 1305166.
Gordon JL, Armisén D, Proux-Wéra E, ÓhÉigeartaigh SS, Byrne KP, Wolfe KH (December 2011). "Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents". Proceedings of the National Academy of Sciences of the United States of America. 108 (50): 20024–9. Bibcode:2011PNAS..10820024G. doi:10.1073/pnas.1112808108. PMC 3250169. PMID 22123960.
Kellis M, Patterson N, Endrizzi M, Birren B, Lander ES (May 2003). "Sequencing and comparison of yeast species to identify genes and regulatory elements". Nature. 423 (6937): 241–54. Bibcode:2003Natur.423..241K. doi:10.1038/nature01644. PMID 12748633. S2CID 1530261.
Scannell DR, Zill OA, Rokas A, Payen C, Dunham MJ, Eisen MB, et al. (June 2011). "The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for the Saccharomyces sensu stricto Genus". G3. 1 (1): 11–25. doi:10.1534/g3.111.000273. PMC 3276118. PMID 22384314.
Liti G, Nguyen Ba AN, Blythe M, Müller CA, Bergström A, Cubillos FA, et al. (January 2013). "High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome". BMC Genomics. 14 (1): 69. doi:10.1186/1471-2164-14-69. PMC 3599269. PMID 23368932.
Argueso JL, Carazzolle MF, Mieczkowski PA, Duarte FM, Netto OV, Missawa SK, et al. (December 2009). "Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production". Genome Research. 19 (12): 2258–70. doi:10.1101/gr.091777.109. PMC 2792172. PMID 19812109.
Goffeau A, Barrell BG, Bussey H, Davis RW, Dujon B, Feldmann H, et al. (October 1996). "Life with 6000 genes". Science. 274 (5287): 546, 563–7. Bibcode:1996Sci...274..546G. doi:10.1126/science.274.5287.546. PMID 8849441. S2CID 16763139.
Dowell RD, Ryan O, Jansen A, Cheung D, Agarwala S, Danford T, et al. (April 2010). "Genotype to phenotype: a complex problem". Science. 328 (5977): 469. Bibcode:2010Sci...328..469D. doi:10.1126/science.1189015. PMC 4412269. PMID 20413493.
Liti G, Carter DM, Moses AM, Warringer J, Parts L, James SA, et al. (March 2009). "Population genomics of domestic and wild yeasts". Nature. 458 (7236): 337–41. Bibcode:2009Natur.458..337L. doi:10.1038/nature07743. PMC 2659681. PMID 19212322.
Nakao Y, Kanamori T, Itoh T, Kodama Y, Rainieri S, Nakamura N, et al. (April 2009). "Genome sequence of the lager brewing yeast, an interspecies hybrid". DNA Research. 16 (2): 115–29. doi:10.1093/dnares/dsp003. PMC 2673734. PMID 19261625.
Jeffries TW, Grigoriev IV, Grimwood J, Laplaza JM, Aerts A, Salamov A, et al. (March 2007). "Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis". Nature Biotechnology. 25 (3): 319–26. doi:10.1038/nbt1290. PMID 17334359.
Scannell DR, Frank AC, Conant GC, Byrne KP, Woolfit M, Wolfe KH (May 2007). "Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication". Proceedings of the National Academy of Sciences of the United States of America. 104 (20): 8397–402. Bibcode:2007PNAS..104.8397S. doi:10.1073/pnas.0608218104. PMC 1895961. PMID 17494770.
Rhind N, Chen Z, Yassour M, Thompson DA, Haas BJ, Habib N, et al. (May 2011). "Comparative functional genomics of the fission yeasts". Science. 332 (6032): 930–6. Bibcode:2011Sci...332..930R. doi:10.1126/science.1203357. PMC 3131103. PMID 21511999.
Wood V, Gwilliam R, Rajandream MA, Lyne M, Lyne R, Stewart A, et al. (February 2002). "The genome sequence of Schizosaccharomyces pombe". Nature. 415 (6874): 871–80. Bibcode:2002Natur.415..871W. doi:10.1038/nature724. PMID 11859360.
O'Connell RJ, Thon MR, Hacquard S, Amyotte SG, Kleemann J, Torres MF, et al. (September 2012). "Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses". Nature Genetics. 44 (9): 1060–5. doi:10.1038/ng.2372. PMC 9754331. PMID 22885923.
Zámocký M, Tafer H, Chovanová K, Lopandic K, Kamlárová A, Obinger C (September 2016). "Genome sequence of the filamentous soil fungus Chaetomium cochliodes reveals abundance of genes for heme enzymes from all peroxidase and catalase superfamilies". BMC Genomics. 17 (1): 763. doi:10.1186/s12864-016-3111-6. PMC 5041501. PMID 27681232.
Amlacher S, Sarges P, Flemming D, van Noort V, Kunze R, Devos DP, et al. (July 2011). "Insight into structure and assembly of the nuclear pore complex by utilizing the genome of a eukaryotic thermophile". Cell. 146 (2): 277–89. doi:10.1016/j.cell.2011.06.039. PMID 21784248.
Ma LJ, van der Does HC, Borkovich KA, Coleman JJ, Daboussi MJ, Di Pietro A, et al. (March 2010). "Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium". Nature. 464 (7287): 367–73. Bibcode:2010Natur.464..367M. doi:10.1038/nature08850. PMC 3048781. PMID 20237561.
Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, Orbach MJ, et al. (April 2005). "The genome sequence of the rice blast fungus Magnaporthe grisea". Nature. 434 (7036): 980–6. Bibcode:2005Natur.434..980D. doi:10.1038/nature03449. PMID 15846337.
Gao Q, Jin K, Ying SH, Zhang Y, Xiao G, Shang Y, et al. (January 2011). "Genome sequencing and comparative transcriptomics of the model entomopathogenic fungi Metarhizium anisopliae and M. acridum". PLOS Genetics. 7 (1): e1001264. doi:10.1371/journal.pgen.1001264. PMC 3017113. PMID 21253567.
Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, Jaffe D, et al. (April 2003). "The genome sequence of the filamentous fungus Neurospora crassa". Nature. 422 (6934): 859–68. Bibcode:2003Natur.422..859G. doi:10.1038/nature01554. PMID 12712197.
Coleman JJ, Rounsley SD, Rodriguez-Carres M, Kuo A, Wasmann CC, Grimwood J, et al. (August 2009). "The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion". PLOS Genetics. 5 (8): e1000618. doi:10.1371/journal.pgen.1000618. PMC 2725324. PMID 19714214.
Espagne E, Lespinet O, Malagnac F, Da Silva C, Jaillon O, Porcel BM, et al. (2008). "The genome sequence of the model ascomycete fungus Podospora anserina". Genome Biology. 9 (5): R77. doi:10.1186/gb-2008-9-5-r77. PMC 2441463. PMID 18460219.
Martinez D, Berka RM, Henrissat B, Saloheimo M, Arvas M, Baker SE, et al. (May 2008). "Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)". Nature Biotechnology. 26 (5): 553–60. doi:10.1038/nbt1403. PMID 18454138.
Gupta DK, Rühl M, Mishra B, Kleofas V, Hofrichter M, Herzog R, et al. (January 2018). "The genome sequence of the commercially cultivated mushroom Agrocybe aegerita reveals a conserved repertoire of fruiting-related genes and a versatile suite of biopolymer-degrading enzymes". BMC Genomics. 19 (1): 48. doi:10.1186/s12864-017-4430-y. PMC 5769442. PMID 29334897.
Floudas D, Binder M, Riley R, Barry K, Blanchette RA, Henrissat B, et al. (June 2012). "The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes". Science. 336 (6089): 1715–9. Bibcode:2012Sci...336.1715F. doi:10.1126/science.1221748. hdl:10261/60626. OSTI 1165864. PMID 22745431. S2CID 37121590.
Yuan Y, Wu F, Si J, Zhao YF, Dai YC (January 2019). "Whole genome sequence of Auricularia heimuer (Basidiomycota, Fungi), the third most important cultivated mushroom worldwide". Genomics. 111 (1): 50–58. doi:10.1016/j.ygeno.2017.12.013. PMID 29288711.
Stajich JE, Wilke SK, Ahrén D, Au CH, Birren BW, Borodovsky M, et al. (June 2010). "Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)". Proceedings of the National Academy of Sciences of the United States of America. 107 (26): 11889–94. Bibcode:2010PNAS..10711889S. doi:10.1073/pnas.1003391107. PMC 2900686. PMID 20547848.
Tang JD, Perkins AD, Sonstegard TS, Schroeder SG, Burgess SC, Diehl SV (April 2012). "Short-read sequencing for genomic analysis of the brown rot fungus Fibroporia radiculosa". Applied and Environmental Microbiology. 78 (7): 2272–81. Bibcode:2012ApEnM..78.2272T. doi:10.1128/AEM.06745-11. PMC 3302605. PMID 22247176.
Martin F, Aerts A, Ahrén D, Brun A, Danchin EG, Duchaussoy F, et al. (March 2008). "The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis". Nature. 452 (7183): 88–92. Bibcode:2008Natur.452...88M. doi:10.1038/nature06556. PMID 18322534.
Shim D, Park SG, Kim K, Bae W, Lee GW, Ha BS, et al. (April 2016). "Whole genome de novo sequencing and genome annotation of the world popular cultivated edible mushroom, Lentinula edodes". Journal of Biotechnology. 223: 24–5. doi:10.1016/j.jbiotec.2016.02.032. PMID 26924240.
Mondego JM, Carazzolle MF, Costa GG, Formighieri EF, Parizzi LP, Rincones J, et al. (November 2008). "A genome survey of Moniliophthora perniciosa gives new insights into Witches' Broom Disease of cacao". BMC Genomics. 9: 548. doi:10.1186/1471-2164-9-548. PMC 2644716. PMID 19019209.
Martinez D, Larrondo LF, Putnam N, Gelpke MD, Huang K, Chapman J, et al. (June 2004). "Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78". Nature Biotechnology. 22 (6): 695–700. doi:10.1038/nbt967. PMID 15122302.
Zuccaro A, Lahrmann U, Güldener U, Langen G, Pfiffi S, Biedenkopf D, et al. (October 2011). "Endophytic life strategies decoded by genome and transcriptome analyses of the mutualistic root symbiont Piriformospora indica". PLOS Pathogens. 7 (10): e1002290. doi:10.1371/journal.ppat.1002290. PMC 3192844. PMID 22022265.
Lam KL, Si K, Wu X, Tang S, Sun X, Kwan HS, Cheung PC (October 2018). "The diploid genome of the only sclerotia-forming wild-type species in the genus Pleurotus -Pleurotus tuber-regium - provides insights into the mechanism of its biomass conversion from lignocellulose substrates". Journal of Biotechnology. 283: 22–27. doi:10.1016/j.jbiotec.2018.07.009. PMID 30003974. S2CID 51617675.
Ohm RA, de Jong JF, Lugones LG, Aerts A, Kothe E, Stajich JE, et al. (September 2010). "Genome sequence of the model mushroom Schizophyllum commune". Nature Biotechnology. 28 (9): 957–63. doi:10.1038/nbt.1643. PMID 20622885.
Eastwood DC, Floudas D, Binder M, Majcherczyk A, Schneider P, Aerts A, et al. (August 2011). "The plant cell wall-decomposing machinery underlies the functional diversity of forest fungi". Science (Submitted manuscript). 333 (6043): 762–5. Bibcode:2011Sci...333..762E. doi:10.1126/science.1205411. PMID 21764756. S2CID 11022844.
Duplessis S, Cuomo CA, Lin YC, Aerts A, Tisserant E, Veneault-Fourrey C, et al. (May 2011). "Obligate biotrophy features unraveled by the genomic analysis of rust fungi". Proceedings of the National Academy of Sciences of the United States of America. 108 (22): 9166–71. Bibcode:2011PNAS..108.9166D. doi:10.1073/pnas.1019315108. PMC 3107277. PMID 21536894.
Lewis CM, Persoons A, Bebber DP, Kigathi RN, Maintz J, Findlay K, et al. (2018-02-08). "Potential for re-emergence of wheat stem rust in the United Kingdom". Communications Biology. 1 (1): 13. doi:10.1038/s42003-018-0013-y. PMC 6053080. PMID 30271900.
Loftus BJ, Fung E, Roncaglia P, Rowley D, Amedeo P, Bruno D, et al. (February 2005). "The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans". Science. 307 (5713): 1321–4. Bibcode:2005Sci...307.1321L. doi:10.1126/science.1103773. PMC 3520129. PMID 15653466.
Xu J, Saunders CW, Hu P, Grant RA, Boekhout T, Kuramae EE, et al. (November 2007). "Dandruff-associated Malassezia genomes reveal convergent and divergent virulence traits shared with plant and human fungal pathogens". Proceedings of the National Academy of Sciences of the United States of America. 104 (47): 18730–5. Bibcode:2007PNAS..10418730X. doi:10.1073/pnas.0706756104. PMC 2141845. PMID 18000048.
Schirawski J, Mannhaupt G, Münch K, Brefort T, Schipper K, Doehlemann G, et al. (December 2010). "Pathogenicity determinants in smut fungi revealed by genome comparison". Science. 330 (6010): 1546–8. Bibcode:2010Sci...330.1546S. doi:10.1126/science.1195330. PMID 21148393. S2CID 19689043.
Kämper J, Kahmann R, Bölker M, Ma LJ, Brefort T, Saville BJ, et al. (November 2006). "Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis". Nature. 444 (7115): 97–101. Bibcode:2006Natur.444...97K. doi:10.1038/nature05248. hdl:10261/339644. PMID 17080091.
Zajc J, Liu Y, Dai W, Yang Z, Hu J, Gostinčar C, Gunde-Cimerman N (September 2013). "Genome and transcriptome sequencing of the halophilic fungus Wallemia ichthyophaga: haloadaptations present and absent". BMC Genomics. 14: 617. doi:10.1186/1471-2164-14-617. PMC 3849046. PMID 24034603.
Padamsee M, Kumar TK, Riley R, Binder M, Boyd A, Calvo AM, et al. (March 2012). "The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction". Fungal Genetics and Biology (Submitted manuscript). 49 (3): 217–26. doi:10.1016/j.fgb.2012.01.007. PMID 22326418.
Katinka MD, Duprat S, Cornillot E, Méténier G, Thomarat F, Prensier G, et al. (November 2001). "Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi". Nature. 414 (6862): 450–3. Bibcode:2001Natur.414..450K. doi:10.1038/35106579. PMID 11719806.
Corradi N, Pombert JF, Farinelli L, Didier ES, Keeling PJ (September 2010). "The complete sequence of the smallest known nuclear genome from the microsporidian Encephalitozoon intestinalis". Nature Communications. 1 (6): 77. Bibcode:2010NatCo...1...77C. doi:10.1038/ncomms1082. PMC 4355639. PMID 20865802.
Akiyoshi DE, Morrison HG, Lei S, Feng X, Zhang Q, Corradi N, et al. (January 2009). "Genomic survey of the non-cultivatable opportunistic human pathogen, Enterocytozoon bieneusi". PLOS Pathogens. 5 (1): e1000261. doi:10.1371/journal.ppat.1000261. PMC 2607024. PMID 19132089.
Keeling PJ, Corradi N, Morrison HG, Haag KL, Ebert D, Weiss LM, et al. (July 2010). "The reduced genome of the parasitic microsporidian Enterocytozoon bieneusi lacks genes for core carbon metabolism". Genome Biology and Evolution. 2: 304–9. doi:10.1093/gbe/evq022. PMC 2942035. PMID 20624735.
Cornman RS, Chen YP, Schatz MC, Street C, Zhao Y, Desany B, et al. (June 2009). "Genomic analyses of the microsporidian Nosema ceranae, an emergent pathogen of honey bees". PLOS Pathogens. 5 (6): e1000466. doi:10.1371/journal.ppat.1000466. PMC 2685015. PMID 19503607.
Corradi N, Haag KL, Pombert JF, Ebert D, Keeling PJ (2009). "Draft genome sequence of the Daphnia pathogen Octosporea bayeri: insights into the gene content of a large microsporidian genome and a model for host-parasite interactions". Genome Biology. 10 (10): R106. doi:10.1186/gb-2009-10-10-r106. PMC 2784321. PMID 19807911.
Ma LJ, Ibrahim AS, Skory C, Grabherr MG, Burger G, Butler M, et al. (July 2009). "Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole-genome duplication". PLOS Genetics. 5 (7): e1000549. doi:10.1371/journal.pgen.1000549. PMC 2699053. PMID 19578406.
Wang L, Chen W, Feng Y, Ren Y, Gu Z, Chen H, et al. (2011). "Genome characterization of the oleaginous fungus Mortierella alpina". PLOS ONE. 6 (12): e28319. Bibcode:2011PLoSO...628319W. doi:10.1371/journal.pone.0028319. PMC 3234268. PMID 22174787.
Stajich, Jason E.; Lovett, Brian; Ettinger, Cassandra L.; Carter-House, Derreck A.; Kurbessoian, Tania; Kasson, Matt T. (2022-08-29). Rokas, Antonis (ed.). "An Improved 1.5-Gigabase Draft Assembly of Massospora cicadina (Zoopagomycota), an Obligate Fungal Parasite of 13- and 17-Year Cicadas". Microbiology Resource Announcements. 11 (10): e00367–22. doi:10.1128/mra.00367-22. ISSN 2576-098X. PMC 9584336. PMID 36036589.

ebi.ac.uk

escholarship.org

Piškur J, Ling Z, Marcet-Houben M, Ishchuk OP, Aerts A, LaButti K, et al. (July 2012). "The genome of wine yeast Dekkera bruxellensis provides a tool to explore its food-related properties". International Journal of Food Microbiology. 157 (2): 202–9. doi:10.1016/j.ijfoodmicro.2012.05.008. PMID 22663979. S2CID 5098170.
Eastwood DC, Floudas D, Binder M, Majcherczyk A, Schneider P, Aerts A, et al. (August 2011). "The plant cell wall-decomposing machinery underlies the functional diversity of forest fungi". Science (Submitted manuscript). 333 (6043): 762–5. Bibcode:2011Sci...333..762E. doi:10.1126/science.1205411. PMID 21764756. S2CID 11022844.
Padamsee M, Kumar TK, Riley R, Binder M, Boyd A, Calvo AM, et al. (March 2012). "The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction". Fungal Genetics and Biology (Submitted manuscript). 49 (3): 217–26. doi:10.1016/j.fgb.2012.01.007. PMID 22326418.

genomesonline.org

handle.net

hdl.handle.net

Nierman WC, Pain A, Anderson MJ, Wortman JR, Kim HS, Arroyo J, et al. (December 2005). "Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus". Nature. 438 (7071): 1151–6. Bibcode:2005Natur.438.1151N. doi:10.1038/nature04332. hdl:10261/71531. PMID 16372009.
Pel HJ, de Winde JH, Archer DB, Dyer PS, Hofmann G, Schaap PJ, et al. (February 2007). "Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88". Nature Biotechnology. 25 (2): 221–31. doi:10.1038/nbt1282. hdl:1887/67447. PMID 17259976.
Martin F, Kohler A, Murat C, Balestrini R, Coutinho PM, Jaillon O, et al. (April 2010). "Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis". Nature. 464 (7291): 1033–8. Bibcode:2010Natur.464.1033M. doi:10.1038/nature08867. hdl:2318/100278. PMID 20348908.
Floudas D, Binder M, Riley R, Barry K, Blanchette RA, Henrissat B, et al. (June 2012). "The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes". Science. 336 (6089): 1715–9. Bibcode:2012Sci...336.1715F. doi:10.1126/science.1221748. hdl:10261/60626. OSTI 1165864. PMID 22745431. S2CID 37121590.
Kämper J, Kahmann R, Bölker M, Ma LJ, Brefort T, Saville BJ, et al. (November 2006). "Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis". Nature. 444 (7115): 97–101. Bibcode:2006Natur.444...97K. doi:10.1038/nature05248. hdl:10261/339644. PMID 17080091.

harvard.edu

ui.adsabs.harvard.edu

Lenassi M, Gostinčar C, Jackman S, Turk M, Sadowski I, Nislow C, et al. (2013). "Whole genome duplication and enrichment of metal cation transporters revealed by de novo genome sequencing of extremely halotolerant black yeast Hortaea werneckii". PLOS ONE. 8 (8): e71328. Bibcode:2013PLoSO...871328L. doi:10.1371/journal.pone.0071328. PMC 3744574. PMID 23977017.
Rouxel T, Grandaubert J, Hane JK, Hoede C, van de Wouw AP, Couloux A, et al. (February 2011). "Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations". Nature Communications. 2 (2): 202. Bibcode:2011NatCo...2..202R. doi:10.1038/ncomms1189. PMC 3105345. PMID 21326234.
Nierman WC, Pain A, Anderson MJ, Wortman JR, Kim HS, Arroyo J, et al. (December 2005). "Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus". Nature. 438 (7071): 1151–6. Bibcode:2005Natur.438.1151N. doi:10.1038/nature04332. hdl:10261/71531. PMID 16372009.
Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, Batzoglou S, et al. (December 2005). "Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae". Nature. 438 (7071): 1105–15. Bibcode:2005Natur.438.1105G. doi:10.1038/nature04341. PMID 16372000.
Machida M, Asai K, Sano M, Tanaka T, Kumagai T, Terai G, et al. (December 2005). "Genome sequencing and analysis of Aspergillus oryzae" (PDF). Nature. 438 (7071): 1157–61. Bibcode:2005Natur.438.1157M. doi:10.1038/nature04300. PMID 16372010.
Martin F, Kohler A, Murat C, Balestrini R, Coutinho PM, Jaillon O, et al. (April 2010). "Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis". Nature. 464 (7291): 1033–8. Bibcode:2010Natur.464.1033M. doi:10.1038/nature08867. hdl:2318/100278. PMID 20348908.
Dietrich FS, Voegeli S, Brachat S, Lerch A, Gates K, Steiner S, et al. (April 2004). "The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome". Science. 304 (5668): 304–7. Bibcode:2004Sci...304..304D. doi:10.1126/science.1095781. PMID 15001715. S2CID 26130646.
Jones T, Federspiel NA, Chibana H, Dungan J, Kalman S, Magee BB, et al. (May 2004). "The diploid genome sequence of Candida albicans". Proceedings of the National Academy of Sciences of the United States of America. 101 (19): 7329–34. Bibcode:2004PNAS..101.7329J. doi:10.1073/pnas.0401648101. PMC 409918. PMID 15123810.
Butler G, Rasmussen MD, Lin MF, Santos MA, Sakthikumar S, Munro CA, et al. (June 2009). "Evolution of pathogenicity and sexual reproduction in eight Candida genomes". Nature. 459 (7247): 657–62. Bibcode:2009Natur.459..657B. doi:10.1038/nature08064. PMC 2834264. PMID 19465905.
Dujon B, Sherman D, Fischer G, Durrens P, Casaregola S, Lafontaine I, et al. (July 2004). "Genome evolution in yeasts". Nature. 430 (6995): 35–44. Bibcode:2004Natur.430...35D. doi:10.1038/nature02579. PMID 15229592. S2CID 4399964.
Riccombeni A, Vidanes G, Proux-Wéra E, Wolfe KH, Butler G (2012). "Sequence and analysis of the genome of the pathogenic yeast Candida orthopsilosis". PLOS ONE. 7 (4): e35750. Bibcode:2012PLoSO...735750R. doi:10.1371/journal.pone.0035750. PMC 3338533. PMID 22563396.
Cliften P, Sudarsanam P, Desikan A, Fulton L, Fulton B, Majors J, et al. (July 2003). "Finding functional features in Saccharomyces genomes by phylogenetic footprinting". Science. 301 (5629): 71–6. Bibcode:2003Sci...301...71C. doi:10.1126/science.1084337. PMID 12775844. S2CID 1305166.
Gordon JL, Armisén D, Proux-Wéra E, ÓhÉigeartaigh SS, Byrne KP, Wolfe KH (December 2011). "Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents". Proceedings of the National Academy of Sciences of the United States of America. 108 (50): 20024–9. Bibcode:2011PNAS..10820024G. doi:10.1073/pnas.1112808108. PMC 3250169. PMID 22123960.
Kellis M, Patterson N, Endrizzi M, Birren B, Lander ES (May 2003). "Sequencing and comparison of yeast species to identify genes and regulatory elements". Nature. 423 (6937): 241–54. Bibcode:2003Natur.423..241K. doi:10.1038/nature01644. PMID 12748633. S2CID 1530261.
Goffeau A, Barrell BG, Bussey H, Davis RW, Dujon B, Feldmann H, et al. (October 1996). "Life with 6000 genes". Science. 274 (5287): 546, 563–7. Bibcode:1996Sci...274..546G. doi:10.1126/science.274.5287.546. PMID 8849441. S2CID 16763139.
Dowell RD, Ryan O, Jansen A, Cheung D, Agarwala S, Danford T, et al. (April 2010). "Genotype to phenotype: a complex problem". Science. 328 (5977): 469. Bibcode:2010Sci...328..469D. doi:10.1126/science.1189015. PMC 4412269. PMID 20413493.
Liti G, Carter DM, Moses AM, Warringer J, Parts L, James SA, et al. (March 2009). "Population genomics of domestic and wild yeasts". Nature. 458 (7236): 337–41. Bibcode:2009Natur.458..337L. doi:10.1038/nature07743. PMC 2659681. PMID 19212322.
Scannell DR, Frank AC, Conant GC, Byrne KP, Woolfit M, Wolfe KH (May 2007). "Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication". Proceedings of the National Academy of Sciences of the United States of America. 104 (20): 8397–402. Bibcode:2007PNAS..104.8397S. doi:10.1073/pnas.0608218104. PMC 1895961. PMID 17494770.
Rhind N, Chen Z, Yassour M, Thompson DA, Haas BJ, Habib N, et al. (May 2011). "Comparative functional genomics of the fission yeasts". Science. 332 (6032): 930–6. Bibcode:2011Sci...332..930R. doi:10.1126/science.1203357. PMC 3131103. PMID 21511999.
Wood V, Gwilliam R, Rajandream MA, Lyne M, Lyne R, Stewart A, et al. (February 2002). "The genome sequence of Schizosaccharomyces pombe". Nature. 415 (6874): 871–80. Bibcode:2002Natur.415..871W. doi:10.1038/nature724. PMID 11859360.
Ma LJ, van der Does HC, Borkovich KA, Coleman JJ, Daboussi MJ, Di Pietro A, et al. (March 2010). "Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium". Nature. 464 (7287): 367–73. Bibcode:2010Natur.464..367M. doi:10.1038/nature08850. PMC 3048781. PMID 20237561.
Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, Orbach MJ, et al. (April 2005). "The genome sequence of the rice blast fungus Magnaporthe grisea". Nature. 434 (7036): 980–6. Bibcode:2005Natur.434..980D. doi:10.1038/nature03449. PMID 15846337.
Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, Jaffe D, et al. (April 2003). "The genome sequence of the filamentous fungus Neurospora crassa". Nature. 422 (6934): 859–68. Bibcode:2003Natur.422..859G. doi:10.1038/nature01554. PMID 12712197.
Floudas D, Binder M, Riley R, Barry K, Blanchette RA, Henrissat B, et al. (June 2012). "The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes". Science. 336 (6089): 1715–9. Bibcode:2012Sci...336.1715F. doi:10.1126/science.1221748. hdl:10261/60626. OSTI 1165864. PMID 22745431. S2CID 37121590.
Stajich JE, Wilke SK, Ahrén D, Au CH, Birren BW, Borodovsky M, et al. (June 2010). "Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)". Proceedings of the National Academy of Sciences of the United States of America. 107 (26): 11889–94. Bibcode:2010PNAS..10711889S. doi:10.1073/pnas.1003391107. PMC 2900686. PMID 20547848.
Tang JD, Perkins AD, Sonstegard TS, Schroeder SG, Burgess SC, Diehl SV (April 2012). "Short-read sequencing for genomic analysis of the brown rot fungus Fibroporia radiculosa". Applied and Environmental Microbiology. 78 (7): 2272–81. Bibcode:2012ApEnM..78.2272T. doi:10.1128/AEM.06745-11. PMC 3302605. PMID 22247176.
Martin F, Aerts A, Ahrén D, Brun A, Danchin EG, Duchaussoy F, et al. (March 2008). "The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis". Nature. 452 (7183): 88–92. Bibcode:2008Natur.452...88M. doi:10.1038/nature06556. PMID 18322534.
Eastwood DC, Floudas D, Binder M, Majcherczyk A, Schneider P, Aerts A, et al. (August 2011). "The plant cell wall-decomposing machinery underlies the functional diversity of forest fungi". Science (Submitted manuscript). 333 (6043): 762–5. Bibcode:2011Sci...333..762E. doi:10.1126/science.1205411. PMID 21764756. S2CID 11022844.
Duplessis S, Cuomo CA, Lin YC, Aerts A, Tisserant E, Veneault-Fourrey C, et al. (May 2011). "Obligate biotrophy features unraveled by the genomic analysis of rust fungi". Proceedings of the National Academy of Sciences of the United States of America. 108 (22): 9166–71. Bibcode:2011PNAS..108.9166D. doi:10.1073/pnas.1019315108. PMC 3107277. PMID 21536894.
Loftus BJ, Fung E, Roncaglia P, Rowley D, Amedeo P, Bruno D, et al. (February 2005). "The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans". Science. 307 (5713): 1321–4. Bibcode:2005Sci...307.1321L. doi:10.1126/science.1103773. PMC 3520129. PMID 15653466.
Xu J, Saunders CW, Hu P, Grant RA, Boekhout T, Kuramae EE, et al. (November 2007). "Dandruff-associated Malassezia genomes reveal convergent and divergent virulence traits shared with plant and human fungal pathogens". Proceedings of the National Academy of Sciences of the United States of America. 104 (47): 18730–5. Bibcode:2007PNAS..10418730X. doi:10.1073/pnas.0706756104. PMC 2141845. PMID 18000048.
Schirawski J, Mannhaupt G, Münch K, Brefort T, Schipper K, Doehlemann G, et al. (December 2010). "Pathogenicity determinants in smut fungi revealed by genome comparison". Science. 330 (6010): 1546–8. Bibcode:2010Sci...330.1546S. doi:10.1126/science.1195330. PMID 21148393. S2CID 19689043.
Kämper J, Kahmann R, Bölker M, Ma LJ, Brefort T, Saville BJ, et al. (November 2006). "Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis". Nature. 444 (7115): 97–101. Bibcode:2006Natur.444...97K. doi:10.1038/nature05248. hdl:10261/339644. PMID 17080091.
Katinka MD, Duprat S, Cornillot E, Méténier G, Thomarat F, Prensier G, et al. (November 2001). "Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi". Nature. 414 (6862): 450–3. Bibcode:2001Natur.414..450K. doi:10.1038/35106579. PMID 11719806.
Corradi N, Pombert JF, Farinelli L, Didier ES, Keeling PJ (September 2010). "The complete sequence of the smallest known nuclear genome from the microsporidian Encephalitozoon intestinalis". Nature Communications. 1 (6): 77. Bibcode:2010NatCo...1...77C. doi:10.1038/ncomms1082. PMC 4355639. PMID 20865802.
Wang L, Chen W, Feng Y, Ren Y, Gu Z, Chen H, et al. (2011). "Genome characterization of the oleaginous fungus Mortierella alpina". PLOS ONE. 6 (12): e28319. Bibcode:2011PLoSO...628319W. doi:10.1371/journal.pone.0028319. PMC 3234268. PMID 22174787.

jgi-psf.gov

genome.jgi-psf.gov

"JGI entry". jgi-psf.gov. Retrieved 24 November 2018.

jgi-psf.org

genome.jgi-psf.org

"Home - Pseudocercospora (Mycosphaerella) fijiensis v2.0". genome.jgi-psf.org. Retrieved 24 November 2018.
"Home - Aspergillus aculeatus ATCC16872 v1.1". genome.jgi-psf.org. Retrieved 24 November 2018.
"Home - Aspergillus carbonarius ITEM 5010 v3". genome.jgi-psf.org. Retrieved 24 November 2018.
"Home - Ogataea polymorpha NCYC 495 leu1.1 v2.0". genome.jgi-psf.org. Retrieved 24 November 2018.
"Home - Spathaspora passalidarum NRRL Y-27907 v2.0". genome.jgi-psf.org. Retrieved 24 November 2018.
"Home - Neurospora tetrasperma FGSC 2508 mat A v2.0". genome.jgi-psf.org. Retrieved 24 November 2018.
"Home - Myceliophthora thermophila (Sporotrichum thermophile) v2.0". genome.jgi-psf.org. Retrieved 24 November 2018.
"Home - Thielavia terrestris v2.0". genome.jgi-psf.org. Retrieved 24 November 2018.
"Home - Trichoderma atroviride v2.0". genome.jgi-psf.org. Retrieved 24 November 2018.
"Home - Trichoderma virens Gv29-8 v2.0". genome.jgi-psf.org. Retrieved 24 November 2018.
"Home - Agaricus bisporus var bisporus (H97) v2.0". genome.jgi-psf.org. Retrieved 24 November 2018.
"Home - Heterobasidion annosum v2.0". genome.jgi-psf.org. Retrieved 24 November 2018.
"Home - Pleurotus ostreatus PC15 v2.0". genome.jgi-psf.org. Retrieved 24 November 2018.
"Home - Postia placenta MAD 698-R v1.0". genome.jgi-psf.org. Retrieved 24 November 2018.
"Home - Rhodotorula graminis strain WP1 v1.1". genome.jgi-psf.org. Retrieved 24 November 2018.
"Home - Piromyces sp. E2 v1.0". genome.jgi-psf.org. Retrieved 24 November 2018.

kuleuven.be

lirias.kuleuven.be

Wood V, Gwilliam R, Rajandream MA, Lyne M, Lyne R, Stewart A, et al. (February 2002). "The genome sequence of Schizosaccharomyces pombe". Nature. 415 (6874): 871–80. Bibcode:2002Natur.415..871W. doi:10.1038/nature724. PMID 11859360.

manchester.ac.uk

escholar.manchester.ac.uk

Machida M, Asai K, Sano M, Tanaka T, Kumagai T, Terai G, et al. (December 2005). "Genome sequencing and analysis of Aspergillus oryzae" (PDF). Nature. 438 (7071): 1157–61. Bibcode:2005Natur.438.1157M. doi:10.1038/nature04300. PMID 16372010.

nih.gov

pubmed.ncbi.nlm.nih.gov

Gostinčar C, Ohm RA, Kogej T, Sonjak S, Turk M, Zajc J, et al. (July 2014). "Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species". BMC Genomics. 15 (1): 549. doi:10.1186/1471-2164-15-549. PMC 4227064. PMID 24984952.
Lenassi M, Gostinčar C, Jackman S, Turk M, Sadowski I, Nislow C, et al. (2013). "Whole genome duplication and enrichment of metal cation transporters revealed by de novo genome sequencing of extremely halotolerant black yeast Hortaea werneckii". PLOS ONE. 8 (8): e71328. Bibcode:2013PLoSO...871328L. doi:10.1371/journal.pone.0071328. PMC 3744574. PMID 23977017.
Nislow, Corey; Stajich, Jason E.; Gostinčar, Cene; Lenassi, Metka; Cimerman, Nina Gunde; Plemenitaš, Ana; Formby, Sean; Neira, Mauricio; Flibotte, Stephane (2017-07-01). "Insight into the Recent Genome Duplication of the Halophilic Yeast Hortaea werneckii: Combining an Improved Genome with Gene Expression and Chromatin Structure". G3: Genes, Genomes, Genetics. 7 (7): 2015–2022. doi:10.1534/g3.117.040691. ISSN 2160-1836. PMC 5499112. PMID 28500048.
Rouxel T, Grandaubert J, Hane JK, Hoede C, van de Wouw AP, Couloux A, et al. (February 2011). "Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations". Nature Communications. 2 (2): 202. Bibcode:2011NatCo...2..202R. doi:10.1038/ncomms1189. PMC 3105345. PMID 21326234.
Islam MS, Haque MS, Islam MM, Emdad EM, Halim A, Hossen QM, et al. (September 2012). "Tools to kill: genome of one of the most destructive plant pathogenic fungi Macrophomina phaseolina". BMC Genomics. 13 (1): 493. doi:10.1186/1471-2164-13-493. PMC 3477038. PMID 22992219.
Goodwin SB, M'barek SB, Dhillon B, Wittenberg AH, Crane CF, Hane JK, et al. (June 2011). "Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis". PLOS Genetics. 7 (6): e1002070. doi:10.1371/journal.pgen.1002070. PMC 3111534. PMID 21695235.
Hane JK, Lowe RG, Solomon PS, Tan KC, Schoch CL, Spatafora JW, et al. (November 2007). "Dothideomycete plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum". The Plant Cell. 19 (11): 3347–68. doi:10.1105/tpc.107.052829. PMC 2174895. PMID 18024570.
Martinez DA, Oliver BG, Gräser Y, Goldberg JM, Li W, Martinez-Rossi NM, et al. (2012). "Comparative genome analysis of Trichophyton rubrum and related dermatophytes reveals candidate genes involved in infection". mBio. 3 (5): e00259-12. doi:10.1128/mBio.00259-12. PMC 3445971. PMID 22951933.
Fedorova ND, Khaldi N, Joardar VS, Maiti R, Amedeo P, Anderson MJ, et al. (April 2008). "Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus". PLOS Genetics. 4 (4): e1000046. doi:10.1371/journal.pgen.1000046. PMC 2289846. PMID 18404212.
Nierman WC, Pain A, Anderson MJ, Wortman JR, Kim HS, Arroyo J, et al. (December 2005). "Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus". Nature. 438 (7071): 1151–6. Bibcode:2005Natur.438.1151N. doi:10.1038/nature04332. hdl:10261/71531. PMID 16372009.
Futagami T, Mori K, Yamashita A, Wada S, Kajiwara Y, Takashita H, et al. (November 2011). "Genome sequence of the white koji mold Aspergillus kawachii IFO 4308, used for brewing the Japanese distilled spirit shochu". Eukaryotic Cell. 10 (11): 1586–7. doi:10.1128/EC.05224-11. PMC 3209066. PMID 22045919.
Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, Batzoglou S, et al. (December 2005). "Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae". Nature. 438 (7071): 1105–15. Bibcode:2005Natur.438.1105G. doi:10.1038/nature04341. PMID 16372000.
Pel HJ, de Winde JH, Archer DB, Dyer PS, Hofmann G, Schaap PJ, et al. (February 2007). "Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88". Nature Biotechnology. 25 (2): 221–31. doi:10.1038/nbt1282. hdl:1887/67447. PMID 17259976.
Machida M, Asai K, Sano M, Tanaka T, Kumagai T, Terai G, et al. (December 2005). "Genome sequencing and analysis of Aspergillus oryzae" (PDF). Nature. 438 (7071): 1157–61. Bibcode:2005Natur.438.1157M. doi:10.1038/nature04300. PMID 16372010.
Sharpton TJ, Stajich JE, Rounsley SD, Gardner MJ, Wortman JR, Jordar VS, et al. (October 2009). "Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives". Genome Research. 19 (10): 1722–31. doi:10.1101/gr.087551.108. PMC 2765278. PMID 19717792.
Desjardins CA, Champion MD, Holder JW, Muszewska A, Goldberg J, Bailão AM, et al. (October 2011). "Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis". PLOS Genetics. 7 (10): e1002345. doi:10.1371/journal.pgen.1002345. PMC 3203195. PMID 22046142.
van den Berg MA, Albang R, Albermann K, Badger JH, Daran JM, Driessen AJ, et al. (October 2008). "Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum" (PDF). Nature Biotechnology. 26 (10): 1161–8. doi:10.1038/nbt.1498. PMID 18820685.
Marcet-Houben M, Ballester AR, de la Fuente B, Harries E, Marcos JF, González-Candelas L, Gabaldón T (November 2012). "Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus". BMC Genomics. 13: 646. doi:10.1186/1471-2164-13-646. PMC 3532085. PMID 23171342.
Woo PC, Lau SK, Liu B, Cai JJ, Chong KT, Tse H, et al. (December 2011). "Draft genome sequence of Penicillium marneffei strain PM1". Eukaryotic Cell. 10 (12): 1740–1. doi:10.1128/EC.05255-11. PMC 3232717. PMID 22131218.
Amselem J, Cuomo CA, van Kan JA, Viaud M, Benito EP, Couloux A, et al. (August 2011). "Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea". PLOS Genetics. 7 (8): e1002230. doi:10.1371/journal.pgen.1002230. PMC 3158057. PMID 21876677.
Youssar L, Grüning BA, Erxleben A, Günther S, Hüttel W (February 2012). "Genome sequence of the fungus Glarea lozoyensis: the first genome sequence of a species from the Helotiaceae family". Eukaryotic Cell. 11 (2): 250. doi:10.1128/EC.05302-11. PMC 3272893. PMID 22302591.
Gianoulis TA, Griffin MA, Spakowicz DJ, Dunican BF, Alpha CJ, Sboner A, et al. (2012). "Genomic analysis of the hydrocarbon-producing, cellulolytic, endophytic fungus Ascocoryne sarcoides". PLOS Genetics. 8 (3): e1002558. doi:10.1371/journal.pgen.1002558. PMC 3291568. PMID 22396667.
Sossah FL, Liu Z, Yang C, Okorley BA, Sun L, Fu Y, Li Y (February 2019). "Cladobotryum protrusum Provides Insights into the Evolution and Pathogenic Mechanisms of the Cobweb Disease Pathogen on Cultivated Mushroom". Genes. 10 (2): 124. doi:10.3390/genes10020124. PMC 6409746. PMID 30744046.
Martin F, Kohler A, Murat C, Balestrini R, Coutinho PM, Jaillon O, et al. (April 2010). "Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis". Nature. 464 (7291): 1033–8. Bibcode:2010Natur.464.1033M. doi:10.1038/nature08867. hdl:2318/100278. PMID 20348908.
Dietrich FS, Voegeli S, Brachat S, Lerch A, Gates K, Steiner S, et al. (April 2004). "The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome". Science. 304 (5668): 304–7. Bibcode:2004Sci...304..304D. doi:10.1126/science.1095781. PMID 15001715. S2CID 26130646.
Jones T, Federspiel NA, Chibana H, Dungan J, Kalman S, Magee BB, et al. (May 2004). "The diploid genome sequence of Candida albicans". Proceedings of the National Academy of Sciences of the United States of America. 101 (19): 7329–34. Bibcode:2004PNAS..101.7329J. doi:10.1073/pnas.0401648101. PMC 409918. PMID 15123810.
Butler G, Rasmussen MD, Lin MF, Santos MA, Sakthikumar S, Munro CA, et al. (June 2009). "Evolution of pathogenicity and sexual reproduction in eight Candida genomes". Nature. 459 (7247): 657–62. Bibcode:2009Natur.459..657B. doi:10.1038/nature08064. PMC 2834264. PMID 19465905.
Dujon B, Sherman D, Fischer G, Durrens P, Casaregola S, Lafontaine I, et al. (July 2004). "Genome evolution in yeasts". Nature. 430 (6995): 35–44. Bibcode:2004Natur.430...35D. doi:10.1038/nature02579. PMID 15229592. S2CID 4399964.
Riccombeni A, Vidanes G, Proux-Wéra E, Wolfe KH, Butler G (2012). "Sequence and analysis of the genome of the pathogenic yeast Candida orthopsilosis". PLOS ONE. 7 (4): e35750. Bibcode:2012PLoSO...735750R. doi:10.1371/journal.pone.0035750. PMC 3338533. PMID 22563396.
Kumar S, Randhawa A, Ganesan K, Raghava GP, Mondal AK (July 2012). "Draft genome sequence of salt-tolerant yeast Debaryomyces hansenii var. hansenii MTCC 234". Eukaryotic Cell. 11 (7): 961–2. doi:10.1128/EC.00137-12. PMC 3416502. PMID 22744717.
Piškur J, Ling Z, Marcet-Houben M, Ishchuk OP, Aerts A, LaButti K, et al. (July 2012). "The genome of wine yeast Dekkera bruxellensis provides a tool to explore its food-related properties". International Journal of Food Microbiology. 157 (2): 202–9. doi:10.1016/j.ijfoodmicro.2012.05.008. PMID 22663979. S2CID 5098170.
Souciet JL, Dujon B, Gaillardin C, Johnston M, Baret PV, Cliften P, et al. (October 2009). "Comparative genomics of protoploid Saccharomycetaceae". Genome Research. 19 (10): 1696–709. doi:10.1101/gr.091546.109. PMC 2765284. PMID 19525356.
Cliften P, Sudarsanam P, Desikan A, Fulton L, Fulton B, Majors J, et al. (July 2003). "Finding functional features in Saccharomyces genomes by phylogenetic footprinting". Science. 301 (5629): 71–6. Bibcode:2003Sci...301...71C. doi:10.1126/science.1084337. PMID 12775844. S2CID 1305166.
Gordon JL, Armisén D, Proux-Wéra E, ÓhÉigeartaigh SS, Byrne KP, Wolfe KH (December 2011). "Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents". Proceedings of the National Academy of Sciences of the United States of America. 108 (50): 20024–9. Bibcode:2011PNAS..10820024G. doi:10.1073/pnas.1112808108. PMC 3250169. PMID 22123960.
Kellis M, Patterson N, Endrizzi M, Birren B, Lander ES (May 2003). "Sequencing and comparison of yeast species to identify genes and regulatory elements". Nature. 423 (6937): 241–54. Bibcode:2003Natur.423..241K. doi:10.1038/nature01644. PMID 12748633. S2CID 1530261.
Scannell DR, Zill OA, Rokas A, Payen C, Dunham MJ, Eisen MB, et al. (June 2011). "The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for the Saccharomyces sensu stricto Genus". G3. 1 (1): 11–25. doi:10.1534/g3.111.000273. PMC 3276118. PMID 22384314.
Liti G, Nguyen Ba AN, Blythe M, Müller CA, Bergström A, Cubillos FA, et al. (January 2013). "High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome". BMC Genomics. 14 (1): 69. doi:10.1186/1471-2164-14-69. PMC 3599269. PMID 23368932.
Argueso JL, Carazzolle MF, Mieczkowski PA, Duarte FM, Netto OV, Missawa SK, et al. (December 2009). "Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production". Genome Research. 19 (12): 2258–70. doi:10.1101/gr.091777.109. PMC 2792172. PMID 19812109.
Goffeau A, Barrell BG, Bussey H, Davis RW, Dujon B, Feldmann H, et al. (October 1996). "Life with 6000 genes". Science. 274 (5287): 546, 563–7. Bibcode:1996Sci...274..546G. doi:10.1126/science.274.5287.546. PMID 8849441. S2CID 16763139.
Dowell RD, Ryan O, Jansen A, Cheung D, Agarwala S, Danford T, et al. (April 2010). "Genotype to phenotype: a complex problem". Science. 328 (5977): 469. Bibcode:2010Sci...328..469D. doi:10.1126/science.1189015. PMC 4412269. PMID 20413493.
Liti G, Carter DM, Moses AM, Warringer J, Parts L, James SA, et al. (March 2009). "Population genomics of domestic and wild yeasts". Nature. 458 (7236): 337–41. Bibcode:2009Natur.458..337L. doi:10.1038/nature07743. PMC 2659681. PMID 19212322.
Nakao Y, Kanamori T, Itoh T, Kodama Y, Rainieri S, Nakamura N, et al. (April 2009). "Genome sequence of the lager brewing yeast, an interspecies hybrid". DNA Research. 16 (2): 115–29. doi:10.1093/dnares/dsp003. PMC 2673734. PMID 19261625.
Jeffries TW, Grigoriev IV, Grimwood J, Laplaza JM, Aerts A, Salamov A, et al. (March 2007). "Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis". Nature Biotechnology. 25 (3): 319–26. doi:10.1038/nbt1290. PMID 17334359.
Scannell DR, Frank AC, Conant GC, Byrne KP, Woolfit M, Wolfe KH (May 2007). "Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication". Proceedings of the National Academy of Sciences of the United States of America. 104 (20): 8397–402. Bibcode:2007PNAS..104.8397S. doi:10.1073/pnas.0608218104. PMC 1895961. PMID 17494770.
Rhind N, Chen Z, Yassour M, Thompson DA, Haas BJ, Habib N, et al. (May 2011). "Comparative functional genomics of the fission yeasts". Science. 332 (6032): 930–6. Bibcode:2011Sci...332..930R. doi:10.1126/science.1203357. PMC 3131103. PMID 21511999.
Wood V, Gwilliam R, Rajandream MA, Lyne M, Lyne R, Stewart A, et al. (February 2002). "The genome sequence of Schizosaccharomyces pombe". Nature. 415 (6874): 871–80. Bibcode:2002Natur.415..871W. doi:10.1038/nature724. PMID 11859360.
O'Connell RJ, Thon MR, Hacquard S, Amyotte SG, Kleemann J, Torres MF, et al. (September 2012). "Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses". Nature Genetics. 44 (9): 1060–5. doi:10.1038/ng.2372. PMC 9754331. PMID 22885923.
Zámocký M, Tafer H, Chovanová K, Lopandic K, Kamlárová A, Obinger C (September 2016). "Genome sequence of the filamentous soil fungus Chaetomium cochliodes reveals abundance of genes for heme enzymes from all peroxidase and catalase superfamilies". BMC Genomics. 17 (1): 763. doi:10.1186/s12864-016-3111-6. PMC 5041501. PMID 27681232.
Amlacher S, Sarges P, Flemming D, van Noort V, Kunze R, Devos DP, et al. (July 2011). "Insight into structure and assembly of the nuclear pore complex by utilizing the genome of a eukaryotic thermophile". Cell. 146 (2): 277–89. doi:10.1016/j.cell.2011.06.039. PMID 21784248.
Ma LJ, van der Does HC, Borkovich KA, Coleman JJ, Daboussi MJ, Di Pietro A, et al. (March 2010). "Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium". Nature. 464 (7287): 367–73. Bibcode:2010Natur.464..367M. doi:10.1038/nature08850. PMC 3048781. PMID 20237561.
Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, Orbach MJ, et al. (April 2005). "The genome sequence of the rice blast fungus Magnaporthe grisea". Nature. 434 (7036): 980–6. Bibcode:2005Natur.434..980D. doi:10.1038/nature03449. PMID 15846337.
Gao Q, Jin K, Ying SH, Zhang Y, Xiao G, Shang Y, et al. (January 2011). "Genome sequencing and comparative transcriptomics of the model entomopathogenic fungi Metarhizium anisopliae and M. acridum". PLOS Genetics. 7 (1): e1001264. doi:10.1371/journal.pgen.1001264. PMC 3017113. PMID 21253567.
Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, Jaffe D, et al. (April 2003). "The genome sequence of the filamentous fungus Neurospora crassa". Nature. 422 (6934): 859–68. Bibcode:2003Natur.422..859G. doi:10.1038/nature01554. PMID 12712197.
Coleman JJ, Rounsley SD, Rodriguez-Carres M, Kuo A, Wasmann CC, Grimwood J, et al. (August 2009). "The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion". PLOS Genetics. 5 (8): e1000618. doi:10.1371/journal.pgen.1000618. PMC 2725324. PMID 19714214.
Espagne E, Lespinet O, Malagnac F, Da Silva C, Jaillon O, Porcel BM, et al. (2008). "The genome sequence of the model ascomycete fungus Podospora anserina". Genome Biology. 9 (5): R77. doi:10.1186/gb-2008-9-5-r77. PMC 2441463. PMID 18460219.
Martinez D, Berka RM, Henrissat B, Saloheimo M, Arvas M, Baker SE, et al. (May 2008). "Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)". Nature Biotechnology. 26 (5): 553–60. doi:10.1038/nbt1403. PMID 18454138.
Gupta DK, Rühl M, Mishra B, Kleofas V, Hofrichter M, Herzog R, et al. (January 2018). "The genome sequence of the commercially cultivated mushroom Agrocybe aegerita reveals a conserved repertoire of fruiting-related genes and a versatile suite of biopolymer-degrading enzymes". BMC Genomics. 19 (1): 48. doi:10.1186/s12864-017-4430-y. PMC 5769442. PMID 29334897.
Floudas D, Binder M, Riley R, Barry K, Blanchette RA, Henrissat B, et al. (June 2012). "The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes". Science. 336 (6089): 1715–9. Bibcode:2012Sci...336.1715F. doi:10.1126/science.1221748. hdl:10261/60626. OSTI 1165864. PMID 22745431. S2CID 37121590.
Yuan Y, Wu F, Si J, Zhao YF, Dai YC (January 2019). "Whole genome sequence of Auricularia heimuer (Basidiomycota, Fungi), the third most important cultivated mushroom worldwide". Genomics. 111 (1): 50–58. doi:10.1016/j.ygeno.2017.12.013. PMID 29288711.
Stajich JE, Wilke SK, Ahrén D, Au CH, Birren BW, Borodovsky M, et al. (June 2010). "Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)". Proceedings of the National Academy of Sciences of the United States of America. 107 (26): 11889–94. Bibcode:2010PNAS..10711889S. doi:10.1073/pnas.1003391107. PMC 2900686. PMID 20547848.
Tang JD, Perkins AD, Sonstegard TS, Schroeder SG, Burgess SC, Diehl SV (April 2012). "Short-read sequencing for genomic analysis of the brown rot fungus Fibroporia radiculosa". Applied and Environmental Microbiology. 78 (7): 2272–81. Bibcode:2012ApEnM..78.2272T. doi:10.1128/AEM.06745-11. PMC 3302605. PMID 22247176.
Martin F, Aerts A, Ahrén D, Brun A, Danchin EG, Duchaussoy F, et al. (March 2008). "The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis". Nature. 452 (7183): 88–92. Bibcode:2008Natur.452...88M. doi:10.1038/nature06556. PMID 18322534.
Shim D, Park SG, Kim K, Bae W, Lee GW, Ha BS, et al. (April 2016). "Whole genome de novo sequencing and genome annotation of the world popular cultivated edible mushroom, Lentinula edodes". Journal of Biotechnology. 223: 24–5. doi:10.1016/j.jbiotec.2016.02.032. PMID 26924240.
Mondego JM, Carazzolle MF, Costa GG, Formighieri EF, Parizzi LP, Rincones J, et al. (November 2008). "A genome survey of Moniliophthora perniciosa gives new insights into Witches' Broom Disease of cacao". BMC Genomics. 9: 548. doi:10.1186/1471-2164-9-548. PMC 2644716. PMID 19019209.
Martinez D, Larrondo LF, Putnam N, Gelpke MD, Huang K, Chapman J, et al. (June 2004). "Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78". Nature Biotechnology. 22 (6): 695–700. doi:10.1038/nbt967. PMID 15122302.
Zuccaro A, Lahrmann U, Güldener U, Langen G, Pfiffi S, Biedenkopf D, et al. (October 2011). "Endophytic life strategies decoded by genome and transcriptome analyses of the mutualistic root symbiont Piriformospora indica". PLOS Pathogens. 7 (10): e1002290. doi:10.1371/journal.ppat.1002290. PMC 3192844. PMID 22022265.
Lam KL, Si K, Wu X, Tang S, Sun X, Kwan HS, Cheung PC (October 2018). "The diploid genome of the only sclerotia-forming wild-type species in the genus Pleurotus -Pleurotus tuber-regium - provides insights into the mechanism of its biomass conversion from lignocellulose substrates". Journal of Biotechnology. 283: 22–27. doi:10.1016/j.jbiotec.2018.07.009. PMID 30003974. S2CID 51617675.
Ohm RA, de Jong JF, Lugones LG, Aerts A, Kothe E, Stajich JE, et al. (September 2010). "Genome sequence of the model mushroom Schizophyllum commune". Nature Biotechnology. 28 (9): 957–63. doi:10.1038/nbt.1643. PMID 20622885.
Eastwood DC, Floudas D, Binder M, Majcherczyk A, Schneider P, Aerts A, et al. (August 2011). "The plant cell wall-decomposing machinery underlies the functional diversity of forest fungi". Science (Submitted manuscript). 333 (6043): 762–5. Bibcode:2011Sci...333..762E. doi:10.1126/science.1205411. PMID 21764756. S2CID 11022844.
Duplessis S, Cuomo CA, Lin YC, Aerts A, Tisserant E, Veneault-Fourrey C, et al. (May 2011). "Obligate biotrophy features unraveled by the genomic analysis of rust fungi". Proceedings of the National Academy of Sciences of the United States of America. 108 (22): 9166–71. Bibcode:2011PNAS..108.9166D. doi:10.1073/pnas.1019315108. PMC 3107277. PMID 21536894.
Lewis CM, Persoons A, Bebber DP, Kigathi RN, Maintz J, Findlay K, et al. (2018-02-08). "Potential for re-emergence of wheat stem rust in the United Kingdom". Communications Biology. 1 (1): 13. doi:10.1038/s42003-018-0013-y. PMC 6053080. PMID 30271900.
Loftus BJ, Fung E, Roncaglia P, Rowley D, Amedeo P, Bruno D, et al. (February 2005). "The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans". Science. 307 (5713): 1321–4. Bibcode:2005Sci...307.1321L. doi:10.1126/science.1103773. PMC 3520129. PMID 15653466.
Xu J, Saunders CW, Hu P, Grant RA, Boekhout T, Kuramae EE, et al. (November 2007). "Dandruff-associated Malassezia genomes reveal convergent and divergent virulence traits shared with plant and human fungal pathogens". Proceedings of the National Academy of Sciences of the United States of America. 104 (47): 18730–5. Bibcode:2007PNAS..10418730X. doi:10.1073/pnas.0706756104. PMC 2141845. PMID 18000048.
Schirawski J, Mannhaupt G, Münch K, Brefort T, Schipper K, Doehlemann G, et al. (December 2010). "Pathogenicity determinants in smut fungi revealed by genome comparison". Science. 330 (6010): 1546–8. Bibcode:2010Sci...330.1546S. doi:10.1126/science.1195330. PMID 21148393. S2CID 19689043.
Kämper J, Kahmann R, Bölker M, Ma LJ, Brefort T, Saville BJ, et al. (November 2006). "Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis". Nature. 444 (7115): 97–101. Bibcode:2006Natur.444...97K. doi:10.1038/nature05248. hdl:10261/339644. PMID 17080091.
Zajc J, Liu Y, Dai W, Yang Z, Hu J, Gostinčar C, Gunde-Cimerman N (September 2013). "Genome and transcriptome sequencing of the halophilic fungus Wallemia ichthyophaga: haloadaptations present and absent". BMC Genomics. 14: 617. doi:10.1186/1471-2164-14-617. PMC 3849046. PMID 24034603.
Padamsee M, Kumar TK, Riley R, Binder M, Boyd A, Calvo AM, et al. (March 2012). "The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction". Fungal Genetics and Biology (Submitted manuscript). 49 (3): 217–26. doi:10.1016/j.fgb.2012.01.007. PMID 22326418.
Katinka MD, Duprat S, Cornillot E, Méténier G, Thomarat F, Prensier G, et al. (November 2001). "Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi". Nature. 414 (6862): 450–3. Bibcode:2001Natur.414..450K. doi:10.1038/35106579. PMID 11719806.
Corradi N, Pombert JF, Farinelli L, Didier ES, Keeling PJ (September 2010). "The complete sequence of the smallest known nuclear genome from the microsporidian Encephalitozoon intestinalis". Nature Communications. 1 (6): 77. Bibcode:2010NatCo...1...77C. doi:10.1038/ncomms1082. PMC 4355639. PMID 20865802.
Akiyoshi DE, Morrison HG, Lei S, Feng X, Zhang Q, Corradi N, et al. (January 2009). "Genomic survey of the non-cultivatable opportunistic human pathogen, Enterocytozoon bieneusi". PLOS Pathogens. 5 (1): e1000261. doi:10.1371/journal.ppat.1000261. PMC 2607024. PMID 19132089.
Keeling PJ, Corradi N, Morrison HG, Haag KL, Ebert D, Weiss LM, et al. (July 2010). "The reduced genome of the parasitic microsporidian Enterocytozoon bieneusi lacks genes for core carbon metabolism". Genome Biology and Evolution. 2: 304–9. doi:10.1093/gbe/evq022. PMC 2942035. PMID 20624735.
Cornman RS, Chen YP, Schatz MC, Street C, Zhao Y, Desany B, et al. (June 2009). "Genomic analyses of the microsporidian Nosema ceranae, an emergent pathogen of honey bees". PLOS Pathogens. 5 (6): e1000466. doi:10.1371/journal.ppat.1000466. PMC 2685015. PMID 19503607.
Corradi N, Haag KL, Pombert JF, Ebert D, Keeling PJ (2009). "Draft genome sequence of the Daphnia pathogen Octosporea bayeri: insights into the gene content of a large microsporidian genome and a model for host-parasite interactions". Genome Biology. 10 (10): R106. doi:10.1186/gb-2009-10-10-r106. PMC 2784321. PMID 19807911.
Ma LJ, Ibrahim AS, Skory C, Grabherr MG, Burger G, Butler M, et al. (July 2009). "Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole-genome duplication". PLOS Genetics. 5 (7): e1000549. doi:10.1371/journal.pgen.1000549. PMC 2699053. PMID 19578406.
Wang L, Chen W, Feng Y, Ren Y, Gu Z, Chen H, et al. (2011). "Genome characterization of the oleaginous fungus Mortierella alpina". PLOS ONE. 6 (12): e28319. Bibcode:2011PLoSO...628319W. doi:10.1371/journal.pone.0028319. PMC 3234268. PMID 22174787.
Stajich, Jason E.; Lovett, Brian; Ettinger, Cassandra L.; Carter-House, Derreck A.; Kurbessoian, Tania; Kasson, Matt T. (2022-08-29). Rokas, Antonis (ed.). "An Improved 1.5-Gigabase Draft Assembly of Massospora cicadina (Zoopagomycota), an Obligate Fungal Parasite of 13- and 17-Year Cicadas". Microbiology Resource Announcements. 11 (10): e00367–22. doi:10.1128/mra.00367-22. ISSN 2576-098X. PMC 9584336. PMID 36036589.

ncbi.nlm.nih.gov

Gostinčar C, Ohm RA, Kogej T, Sonjak S, Turk M, Zajc J, et al. (July 2014). "Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species". BMC Genomics. 15 (1): 549. doi:10.1186/1471-2164-15-549. PMC 4227064. PMID 24984952.
Lenassi M, Gostinčar C, Jackman S, Turk M, Sadowski I, Nislow C, et al. (2013). "Whole genome duplication and enrichment of metal cation transporters revealed by de novo genome sequencing of extremely halotolerant black yeast Hortaea werneckii". PLOS ONE. 8 (8): e71328. Bibcode:2013PLoSO...871328L. doi:10.1371/journal.pone.0071328. PMC 3744574. PMID 23977017.
Nislow, Corey; Stajich, Jason E.; Gostinčar, Cene; Lenassi, Metka; Cimerman, Nina Gunde; Plemenitaš, Ana; Formby, Sean; Neira, Mauricio; Flibotte, Stephane (2017-07-01). "Insight into the Recent Genome Duplication of the Halophilic Yeast Hortaea werneckii: Combining an Improved Genome with Gene Expression and Chromatin Structure". G3: Genes, Genomes, Genetics. 7 (7): 2015–2022. doi:10.1534/g3.117.040691. ISSN 2160-1836. PMC 5499112. PMID 28500048.
Rouxel T, Grandaubert J, Hane JK, Hoede C, van de Wouw AP, Couloux A, et al. (February 2011). "Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations". Nature Communications. 2 (2): 202. Bibcode:2011NatCo...2..202R. doi:10.1038/ncomms1189. PMC 3105345. PMID 21326234.
Islam MS, Haque MS, Islam MM, Emdad EM, Halim A, Hossen QM, et al. (September 2012). "Tools to kill: genome of one of the most destructive plant pathogenic fungi Macrophomina phaseolina". BMC Genomics. 13 (1): 493. doi:10.1186/1471-2164-13-493. PMC 3477038. PMID 22992219.
Goodwin SB, M'barek SB, Dhillon B, Wittenberg AH, Crane CF, Hane JK, et al. (June 2011). "Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis". PLOS Genetics. 7 (6): e1002070. doi:10.1371/journal.pgen.1002070. PMC 3111534. PMID 21695235.
Hane JK, Lowe RG, Solomon PS, Tan KC, Schoch CL, Spatafora JW, et al. (November 2007). "Dothideomycete plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum". The Plant Cell. 19 (11): 3347–68. doi:10.1105/tpc.107.052829. PMC 2174895. PMID 18024570.
Martinez DA, Oliver BG, Gräser Y, Goldberg JM, Li W, Martinez-Rossi NM, et al. (2012). "Comparative genome analysis of Trichophyton rubrum and related dermatophytes reveals candidate genes involved in infection". mBio. 3 (5): e00259-12. doi:10.1128/mBio.00259-12. PMC 3445971. PMID 22951933.
Fedorova ND, Khaldi N, Joardar VS, Maiti R, Amedeo P, Anderson MJ, et al. (April 2008). "Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus". PLOS Genetics. 4 (4): e1000046. doi:10.1371/journal.pgen.1000046. PMC 2289846. PMID 18404212.
Futagami T, Mori K, Yamashita A, Wada S, Kajiwara Y, Takashita H, et al. (November 2011). "Genome sequence of the white koji mold Aspergillus kawachii IFO 4308, used for brewing the Japanese distilled spirit shochu". Eukaryotic Cell. 10 (11): 1586–7. doi:10.1128/EC.05224-11. PMC 3209066. PMID 22045919.
Sharpton TJ, Stajich JE, Rounsley SD, Gardner MJ, Wortman JR, Jordar VS, et al. (October 2009). "Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives". Genome Research. 19 (10): 1722–31. doi:10.1101/gr.087551.108. PMC 2765278. PMID 19717792.
Desjardins CA, Champion MD, Holder JW, Muszewska A, Goldberg J, Bailão AM, et al. (October 2011). "Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis". PLOS Genetics. 7 (10): e1002345. doi:10.1371/journal.pgen.1002345. PMC 3203195. PMID 22046142.
Marcet-Houben M, Ballester AR, de la Fuente B, Harries E, Marcos JF, González-Candelas L, Gabaldón T (November 2012). "Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus". BMC Genomics. 13: 646. doi:10.1186/1471-2164-13-646. PMC 3532085. PMID 23171342.
Woo PC, Lau SK, Liu B, Cai JJ, Chong KT, Tse H, et al. (December 2011). "Draft genome sequence of Penicillium marneffei strain PM1". Eukaryotic Cell. 10 (12): 1740–1. doi:10.1128/EC.05255-11. PMC 3232717. PMID 22131218.
Amselem J, Cuomo CA, van Kan JA, Viaud M, Benito EP, Couloux A, et al. (August 2011). "Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea". PLOS Genetics. 7 (8): e1002230. doi:10.1371/journal.pgen.1002230. PMC 3158057. PMID 21876677.
Youssar L, Grüning BA, Erxleben A, Günther S, Hüttel W (February 2012). "Genome sequence of the fungus Glarea lozoyensis: the first genome sequence of a species from the Helotiaceae family". Eukaryotic Cell. 11 (2): 250. doi:10.1128/EC.05302-11. PMC 3272893. PMID 22302591.
Gianoulis TA, Griffin MA, Spakowicz DJ, Dunican BF, Alpha CJ, Sboner A, et al. (2012). "Genomic analysis of the hydrocarbon-producing, cellulolytic, endophytic fungus Ascocoryne sarcoides". PLOS Genetics. 8 (3): e1002558. doi:10.1371/journal.pgen.1002558. PMC 3291568. PMID 22396667.
Sossah FL, Liu Z, Yang C, Okorley BA, Sun L, Fu Y, Li Y (February 2019). "Cladobotryum protrusum Provides Insights into the Evolution and Pathogenic Mechanisms of the Cobweb Disease Pathogen on Cultivated Mushroom". Genes. 10 (2): 124. doi:10.3390/genes10020124. PMC 6409746. PMID 30744046.
Jones T, Federspiel NA, Chibana H, Dungan J, Kalman S, Magee BB, et al. (May 2004). "The diploid genome sequence of Candida albicans". Proceedings of the National Academy of Sciences of the United States of America. 101 (19): 7329–34. Bibcode:2004PNAS..101.7329J. doi:10.1073/pnas.0401648101. PMC 409918. PMID 15123810.
Butler G, Rasmussen MD, Lin MF, Santos MA, Sakthikumar S, Munro CA, et al. (June 2009). "Evolution of pathogenicity and sexual reproduction in eight Candida genomes". Nature. 459 (7247): 657–62. Bibcode:2009Natur.459..657B. doi:10.1038/nature08064. PMC 2834264. PMID 19465905.
Riccombeni A, Vidanes G, Proux-Wéra E, Wolfe KH, Butler G (2012). "Sequence and analysis of the genome of the pathogenic yeast Candida orthopsilosis". PLOS ONE. 7 (4): e35750. Bibcode:2012PLoSO...735750R. doi:10.1371/journal.pone.0035750. PMC 3338533. PMID 22563396.
Kumar S, Randhawa A, Ganesan K, Raghava GP, Mondal AK (July 2012). "Draft genome sequence of salt-tolerant yeast Debaryomyces hansenii var. hansenii MTCC 234". Eukaryotic Cell. 11 (7): 961–2. doi:10.1128/EC.00137-12. PMC 3416502. PMID 22744717.
Souciet JL, Dujon B, Gaillardin C, Johnston M, Baret PV, Cliften P, et al. (October 2009). "Comparative genomics of protoploid Saccharomycetaceae". Genome Research. 19 (10): 1696–709. doi:10.1101/gr.091546.109. PMC 2765284. PMID 19525356.
Gordon JL, Armisén D, Proux-Wéra E, ÓhÉigeartaigh SS, Byrne KP, Wolfe KH (December 2011). "Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents". Proceedings of the National Academy of Sciences of the United States of America. 108 (50): 20024–9. Bibcode:2011PNAS..10820024G. doi:10.1073/pnas.1112808108. PMC 3250169. PMID 22123960.
Scannell DR, Zill OA, Rokas A, Payen C, Dunham MJ, Eisen MB, et al. (June 2011). "The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for the Saccharomyces sensu stricto Genus". G3. 1 (1): 11–25. doi:10.1534/g3.111.000273. PMC 3276118. PMID 22384314.
Liti G, Nguyen Ba AN, Blythe M, Müller CA, Bergström A, Cubillos FA, et al. (January 2013). "High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome". BMC Genomics. 14 (1): 69. doi:10.1186/1471-2164-14-69. PMC 3599269. PMID 23368932.
Argueso JL, Carazzolle MF, Mieczkowski PA, Duarte FM, Netto OV, Missawa SK, et al. (December 2009). "Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production". Genome Research. 19 (12): 2258–70. doi:10.1101/gr.091777.109. PMC 2792172. PMID 19812109.
Dowell RD, Ryan O, Jansen A, Cheung D, Agarwala S, Danford T, et al. (April 2010). "Genotype to phenotype: a complex problem". Science. 328 (5977): 469. Bibcode:2010Sci...328..469D. doi:10.1126/science.1189015. PMC 4412269. PMID 20413493.
Liti G, Carter DM, Moses AM, Warringer J, Parts L, James SA, et al. (March 2009). "Population genomics of domestic and wild yeasts". Nature. 458 (7236): 337–41. Bibcode:2009Natur.458..337L. doi:10.1038/nature07743. PMC 2659681. PMID 19212322.
Nakao Y, Kanamori T, Itoh T, Kodama Y, Rainieri S, Nakamura N, et al. (April 2009). "Genome sequence of the lager brewing yeast, an interspecies hybrid". DNA Research. 16 (2): 115–29. doi:10.1093/dnares/dsp003. PMC 2673734. PMID 19261625.
Scannell DR, Frank AC, Conant GC, Byrne KP, Woolfit M, Wolfe KH (May 2007). "Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication". Proceedings of the National Academy of Sciences of the United States of America. 104 (20): 8397–402. Bibcode:2007PNAS..104.8397S. doi:10.1073/pnas.0608218104. PMC 1895961. PMID 17494770.
Rhind N, Chen Z, Yassour M, Thompson DA, Haas BJ, Habib N, et al. (May 2011). "Comparative functional genomics of the fission yeasts". Science. 332 (6032): 930–6. Bibcode:2011Sci...332..930R. doi:10.1126/science.1203357. PMC 3131103. PMID 21511999.
O'Connell RJ, Thon MR, Hacquard S, Amyotte SG, Kleemann J, Torres MF, et al. (September 2012). "Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses". Nature Genetics. 44 (9): 1060–5. doi:10.1038/ng.2372. PMC 9754331. PMID 22885923.
Zámocký M, Tafer H, Chovanová K, Lopandic K, Kamlárová A, Obinger C (September 2016). "Genome sequence of the filamentous soil fungus Chaetomium cochliodes reveals abundance of genes for heme enzymes from all peroxidase and catalase superfamilies". BMC Genomics. 17 (1): 763. doi:10.1186/s12864-016-3111-6. PMC 5041501. PMID 27681232.
Ma LJ, van der Does HC, Borkovich KA, Coleman JJ, Daboussi MJ, Di Pietro A, et al. (March 2010). "Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium". Nature. 464 (7287): 367–73. Bibcode:2010Natur.464..367M. doi:10.1038/nature08850. PMC 3048781. PMID 20237561.
Gao Q, Jin K, Ying SH, Zhang Y, Xiao G, Shang Y, et al. (January 2011). "Genome sequencing and comparative transcriptomics of the model entomopathogenic fungi Metarhizium anisopliae and M. acridum". PLOS Genetics. 7 (1): e1001264. doi:10.1371/journal.pgen.1001264. PMC 3017113. PMID 21253567.
Coleman JJ, Rounsley SD, Rodriguez-Carres M, Kuo A, Wasmann CC, Grimwood J, et al. (August 2009). "The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion". PLOS Genetics. 5 (8): e1000618. doi:10.1371/journal.pgen.1000618. PMC 2725324. PMID 19714214.
Espagne E, Lespinet O, Malagnac F, Da Silva C, Jaillon O, Porcel BM, et al. (2008). "The genome sequence of the model ascomycete fungus Podospora anserina". Genome Biology. 9 (5): R77. doi:10.1186/gb-2008-9-5-r77. PMC 2441463. PMID 18460219.
Gupta DK, Rühl M, Mishra B, Kleofas V, Hofrichter M, Herzog R, et al. (January 2018). "The genome sequence of the commercially cultivated mushroom Agrocybe aegerita reveals a conserved repertoire of fruiting-related genes and a versatile suite of biopolymer-degrading enzymes". BMC Genomics. 19 (1): 48. doi:10.1186/s12864-017-4430-y. PMC 5769442. PMID 29334897.
Stajich JE, Wilke SK, Ahrén D, Au CH, Birren BW, Borodovsky M, et al. (June 2010). "Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)". Proceedings of the National Academy of Sciences of the United States of America. 107 (26): 11889–94. Bibcode:2010PNAS..10711889S. doi:10.1073/pnas.1003391107. PMC 2900686. PMID 20547848.
Tang JD, Perkins AD, Sonstegard TS, Schroeder SG, Burgess SC, Diehl SV (April 2012). "Short-read sequencing for genomic analysis of the brown rot fungus Fibroporia radiculosa". Applied and Environmental Microbiology. 78 (7): 2272–81. Bibcode:2012ApEnM..78.2272T. doi:10.1128/AEM.06745-11. PMC 3302605. PMID 22247176.
Mondego JM, Carazzolle MF, Costa GG, Formighieri EF, Parizzi LP, Rincones J, et al. (November 2008). "A genome survey of Moniliophthora perniciosa gives new insights into Witches' Broom Disease of cacao". BMC Genomics. 9: 548. doi:10.1186/1471-2164-9-548. PMC 2644716. PMID 19019209.
Zuccaro A, Lahrmann U, Güldener U, Langen G, Pfiffi S, Biedenkopf D, et al. (October 2011). "Endophytic life strategies decoded by genome and transcriptome analyses of the mutualistic root symbiont Piriformospora indica". PLOS Pathogens. 7 (10): e1002290. doi:10.1371/journal.ppat.1002290. PMC 3192844. PMID 22022265.
Duplessis S, Cuomo CA, Lin YC, Aerts A, Tisserant E, Veneault-Fourrey C, et al. (May 2011). "Obligate biotrophy features unraveled by the genomic analysis of rust fungi". Proceedings of the National Academy of Sciences of the United States of America. 108 (22): 9166–71. Bibcode:2011PNAS..108.9166D. doi:10.1073/pnas.1019315108. PMC 3107277. PMID 21536894.
Lewis CM, Persoons A, Bebber DP, Kigathi RN, Maintz J, Findlay K, et al. (2018-02-08). "Potential for re-emergence of wheat stem rust in the United Kingdom". Communications Biology. 1 (1): 13. doi:10.1038/s42003-018-0013-y. PMC 6053080. PMID 30271900.
Loftus BJ, Fung E, Roncaglia P, Rowley D, Amedeo P, Bruno D, et al. (February 2005). "The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans". Science. 307 (5713): 1321–4. Bibcode:2005Sci...307.1321L. doi:10.1126/science.1103773. PMC 3520129. PMID 15653466.
Xu J, Saunders CW, Hu P, Grant RA, Boekhout T, Kuramae EE, et al. (November 2007). "Dandruff-associated Malassezia genomes reveal convergent and divergent virulence traits shared with plant and human fungal pathogens". Proceedings of the National Academy of Sciences of the United States of America. 104 (47): 18730–5. Bibcode:2007PNAS..10418730X. doi:10.1073/pnas.0706756104. PMC 2141845. PMID 18000048.
Zajc J, Liu Y, Dai W, Yang Z, Hu J, Gostinčar C, Gunde-Cimerman N (September 2013). "Genome and transcriptome sequencing of the halophilic fungus Wallemia ichthyophaga: haloadaptations present and absent". BMC Genomics. 14: 617. doi:10.1186/1471-2164-14-617. PMC 3849046. PMID 24034603.
Corradi N, Pombert JF, Farinelli L, Didier ES, Keeling PJ (September 2010). "The complete sequence of the smallest known nuclear genome from the microsporidian Encephalitozoon intestinalis". Nature Communications. 1 (6): 77. Bibcode:2010NatCo...1...77C. doi:10.1038/ncomms1082. PMC 4355639. PMID 20865802.
Akiyoshi DE, Morrison HG, Lei S, Feng X, Zhang Q, Corradi N, et al. (January 2009). "Genomic survey of the non-cultivatable opportunistic human pathogen, Enterocytozoon bieneusi". PLOS Pathogens. 5 (1): e1000261. doi:10.1371/journal.ppat.1000261. PMC 2607024. PMID 19132089.
Keeling PJ, Corradi N, Morrison HG, Haag KL, Ebert D, Weiss LM, et al. (July 2010). "The reduced genome of the parasitic microsporidian Enterocytozoon bieneusi lacks genes for core carbon metabolism". Genome Biology and Evolution. 2: 304–9. doi:10.1093/gbe/evq022. PMC 2942035. PMID 20624735.
Cornman RS, Chen YP, Schatz MC, Street C, Zhao Y, Desany B, et al. (June 2009). "Genomic analyses of the microsporidian Nosema ceranae, an emergent pathogen of honey bees". PLOS Pathogens. 5 (6): e1000466. doi:10.1371/journal.ppat.1000466. PMC 2685015. PMID 19503607.
Corradi N, Haag KL, Pombert JF, Ebert D, Keeling PJ (2009). "Draft genome sequence of the Daphnia pathogen Octosporea bayeri: insights into the gene content of a large microsporidian genome and a model for host-parasite interactions". Genome Biology. 10 (10): R106. doi:10.1186/gb-2009-10-10-r106. PMC 2784321. PMID 19807911.
Ma LJ, Ibrahim AS, Skory C, Grabherr MG, Burger G, Butler M, et al. (July 2009). "Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole-genome duplication". PLOS Genetics. 5 (7): e1000549. doi:10.1371/journal.pgen.1000549. PMC 2699053. PMID 19578406.
Wang L, Chen W, Feng Y, Ren Y, Gu Z, Chen H, et al. (2011). "Genome characterization of the oleaginous fungus Mortierella alpina". PLOS ONE. 6 (12): e28319. Bibcode:2011PLoSO...628319W. doi:10.1371/journal.pone.0028319. PMC 3234268. PMID 22174787.
Stajich, Jason E.; Lovett, Brian; Ettinger, Cassandra L.; Carter-House, Derreck A.; Kurbessoian, Tania; Kasson, Matt T. (2022-08-29). Rokas, Antonis (ed.). "An Improved 1.5-Gigabase Draft Assembly of Massospora cicadina (Zoopagomycota), an Obligate Fungal Parasite of 13- and 17-Year Cicadas". Microbiology Resource Announcements. 11 (10): e00367–22. doi:10.1128/mra.00367-22. ISSN 2576-098X. PMC 9584336. PMID 36036589.

osti.gov

Floudas D, Binder M, Riley R, Barry K, Blanchette RA, Henrissat B, et al. (June 2012). "The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes". Science. 336 (6089): 1715–9. Bibcode:2012Sci...336.1715F. doi:10.1126/science.1221748. hdl:10261/60626. OSTI 1165864. PMID 22745431. S2CID 37121590.

rug.nl

van den Berg MA, Albang R, Albermann K, Badger JH, Daran JM, Driessen AJ, et al. (October 2008). "Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum" (PDF). Nature Biotechnology. 26 (10): 1161–8. doi:10.1038/nbt.1498. PMID 18820685.

semanticscholar.org

api.semanticscholar.org

Dietrich FS, Voegeli S, Brachat S, Lerch A, Gates K, Steiner S, et al. (April 2004). "The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome". Science. 304 (5668): 304–7. Bibcode:2004Sci...304..304D. doi:10.1126/science.1095781. PMID 15001715. S2CID 26130646.
Dujon B, Sherman D, Fischer G, Durrens P, Casaregola S, Lafontaine I, et al. (July 2004). "Genome evolution in yeasts". Nature. 430 (6995): 35–44. Bibcode:2004Natur.430...35D. doi:10.1038/nature02579. PMID 15229592. S2CID 4399964.
Piškur J, Ling Z, Marcet-Houben M, Ishchuk OP, Aerts A, LaButti K, et al. (July 2012). "The genome of wine yeast Dekkera bruxellensis provides a tool to explore its food-related properties". International Journal of Food Microbiology. 157 (2): 202–9. doi:10.1016/j.ijfoodmicro.2012.05.008. PMID 22663979. S2CID 5098170.
Cliften P, Sudarsanam P, Desikan A, Fulton L, Fulton B, Majors J, et al. (July 2003). "Finding functional features in Saccharomyces genomes by phylogenetic footprinting". Science. 301 (5629): 71–6. Bibcode:2003Sci...301...71C. doi:10.1126/science.1084337. PMID 12775844. S2CID 1305166.
Kellis M, Patterson N, Endrizzi M, Birren B, Lander ES (May 2003). "Sequencing and comparison of yeast species to identify genes and regulatory elements". Nature. 423 (6937): 241–54. Bibcode:2003Natur.423..241K. doi:10.1038/nature01644. PMID 12748633. S2CID 1530261.
Goffeau A, Barrell BG, Bussey H, Davis RW, Dujon B, Feldmann H, et al. (October 1996). "Life with 6000 genes". Science. 274 (5287): 546, 563–7. Bibcode:1996Sci...274..546G. doi:10.1126/science.274.5287.546. PMID 8849441. S2CID 16763139.
Floudas D, Binder M, Riley R, Barry K, Blanchette RA, Henrissat B, et al. (June 2012). "The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes". Science. 336 (6089): 1715–9. Bibcode:2012Sci...336.1715F. doi:10.1126/science.1221748. hdl:10261/60626. OSTI 1165864. PMID 22745431. S2CID 37121590.
Lam KL, Si K, Wu X, Tang S, Sun X, Kwan HS, Cheung PC (October 2018). "The diploid genome of the only sclerotia-forming wild-type species in the genus Pleurotus -Pleurotus tuber-regium - provides insights into the mechanism of its biomass conversion from lignocellulose substrates". Journal of Biotechnology. 283: 22–27. doi:10.1016/j.jbiotec.2018.07.009. PMID 30003974. S2CID 51617675.
Eastwood DC, Floudas D, Binder M, Majcherczyk A, Schneider P, Aerts A, et al. (August 2011). "The plant cell wall-decomposing machinery underlies the functional diversity of forest fungi". Science (Submitted manuscript). 333 (6043): 762–5. Bibcode:2011Sci...333..762E. doi:10.1126/science.1205411. PMID 21764756. S2CID 11022844.
Schirawski J, Mannhaupt G, Münch K, Brefort T, Schipper K, Doehlemann G, et al. (December 2010). "Pathogenicity determinants in smut fungi revealed by genome comparison". Science. 330 (6010): 1546–8. Bibcode:2010Sci...330.1546S. doi:10.1126/science.1195330. PMID 21148393. S2CID 19689043.

ubc.ca

publicaffairs.ubc.ca

"Genome of blue stain fungus evolved to bypass tree defense in mountain pine beetle epidemic: UBC research". ubc.ca. 24 January 2011. Retrieved 24 November 2018.

worldcat.org

Nislow, Corey; Stajich, Jason E.; Gostinčar, Cene; Lenassi, Metka; Cimerman, Nina Gunde; Plemenitaš, Ana; Formby, Sean; Neira, Mauricio; Flibotte, Stephane (2017-07-01). "Insight into the Recent Genome Duplication of the Halophilic Yeast Hortaea werneckii: Combining an Improved Genome with Gene Expression and Chromatin Structure". G3: Genes, Genomes, Genetics. 7 (7): 2015–2022. doi:10.1534/g3.117.040691. ISSN 2160-1836. PMC 5499112. PMID 28500048.
Stajich, Jason E.; Lovett, Brian; Ettinger, Cassandra L.; Carter-House, Derreck A.; Kurbessoian, Tania; Kasson, Matt T. (2022-08-29). Rokas, Antonis (ed.). "An Improved 1.5-Gigabase Draft Assembly of Massospora cicadina (Zoopagomycota), an Obligate Fungal Parasite of 13- and 17-Year Cicadas". Microbiology Resource Announcements. 11 (10): e00367–22. doi:10.1128/mra.00367-22. ISSN 2576-098X. PMC 9584336. PMID 36036589.