List of sequenced plant genomes (English Wikipedia)

Krishnan NM, Pattnaik S, Deepak SA, Hariharan AK, Gaur P, Chaudhary R, et al. (25 December 2011). "De novo sequencing and assembly ofAzadirachta indica fruit transcriptome" (PDF). Current Science. 101 (12): 1553–61.

doe.gov

"Phytozome v13". phytozome-next.jgi.doe.gov. Retrieved 2021-10-15.

"Phytozome". phytozome.jgi.doe.gov. Retrieved 2017-06-21.

doi.org

erysimum.org

"Erysimum Genome Site". www.erysimum.org. September 17, 2019.

escholarship.org

gbif.org

"Chloranthus spicatus (Thunb.) Makino". www.gbif.org. Retrieved 2022-07-07.

gigabytejournal.com

Bruccoleri RE, Oakeley EJ, Faust AM, Altorfer M, Dessus-Babus S, Burckhardt D, et al. (2023-10-05). "Genome assembly of the bearded iris, Iris pallida Lam". Gigabyte. 2023: 1–10. doi:10.46471/gigabyte.94. ISSN 2709-4715. PMC 10565908. PMID 37829656.

gigadb.org

Chang Y, Liu H, Liu M, Liao X, Sahu SK, Fu Y, et al. (2018). "Genomic data of the Apple-Ring Acacia (Faidherbia albida)". GigaDB Dataset. GigaScience Database. doi:10.5524/101054. Retrieved 2019-06-19.
Chang Y, Liu H, Liu M, Liao X, Sahu SK, Fu Y, et al. (2018). "Genomic data of the Bambara Groundnut (Vigna subterranea)". GigaDB Dataset. GigaScience Database. doi:10.5524/101055. Retrieved 2019-06-19.

gramene.org

"Four Rosaceae Genomes Released". Gramene: A Resource for Comparative Plant Genomics. 11 June 2013.

handle.net

harvard.edu

iastate.edu

icrisat.org

inra.fr

Chalhoub B, Denoeud F, Liu S, Parkin IA, Tang H, Wang X, et al. (August 2014). "Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome". Science. 345 (6199): 950–3. Bibcode:2014Sci...345..950C. doi:10.1126/science.1253435. PMID 25146293. S2CID 206556986.
- "Oilseed rape genome sequenced". L'Institut national de la recherche agronomique (Press release). Archived from the original on 2017-07-19.

jgi-psf.org

"Phytozome". JGI MycoCosm.

maizesequence.org

msu.edu

"Spud DB". solanaceae.plantbiology.msu.edu. Retrieved 2019-03-20.

nih.gov

okayama-u.ac.jp

osti.gov

Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, et al. (September 2006). "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" (PDF). Science. 313 (5793): 1596–604. Bibcode:2006Sci...313.1596T. doi:10.1126/science.1128691. OSTI 901819. PMID 16973872. S2CID 7717980.

petuniaplatform.net

"The Petunia Platform". Archived from the original on 9 January 2011.

phytozome.net

"Aquilegia caerulea". Phytozome v9.1. Archived from the original on 2015-02-20. Retrieved 2013-07-10.
"Capsella rubella". Phytozome v9.1. Archived from the original on 2015-04-26. Retrieved 2013-07-09.
"Phaseolus vulgaris v1.0". Phytozome v9.1. Archived from the original on 2015-04-15. Retrieved 2013-07-09.
"Gossypium raimondii v2.1". Phytozome v9.1. Archived from the original on 2015-02-18. Retrieved 2013-07-10.
"Citrus clementina". Phytozome v9.1. Archived from the original on 2015-02-19. Retrieved 2013-07-10.
"Mimulus guttatus". Phytozome v9.1. Archived from the original on 16 February 2015.
"Panicum virgatum". Phytozome v9.1. Archived from the original on 2015-02-19. Retrieved 2013-07-10.

semanticscholar.org

Rensing SA, Lang D, Zimmer AD, Terry A, Salamov A, Shapiro H, et al. (January 2008). "The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants". Science. 319 (5859): 64–9. Bibcode:2008Sci...319...64R. doi:10.1126/science.1150646. hdl:11858/00-001M-0000-0012-3787-A. PMID 18079367. S2CID 11115152.
Qiao X, Zhang S, Paterson AH (2022). "Pervasive genome duplications across the plant tree of life and their links to major evolutionary innovations and transitions". Computational and Structural Biotechnology Journal. 20. Elsevier BV: 3248–3256. doi:10.1016/j.csbj.2022.06.026. PMC 9237934. PMID 35782740. S2CID 249722160.

Stull GW, Pham KK, Soltis PS, Soltis DE (May 2023). "Deep reticulation: the long legacy of hybridization in vascular plant evolution". The Plant Journal. 114 (4). John Wiley & Sons Ltd: 743–766. doi:10.1111/tpj.16142. PMID 36775995. S2CID 253124732.

These reviews cite this research.

Huang X, Wang W, Gong T, Wickell D, Kuo LY, Zhang X, et al. (May 2022). "The flying spider-monkey tree fern genome provides insights into fern evolution and arborescence". Nature Plants. 8 (5): 500–512. Bibcode:2022NatPl...8..500H. doi:10.1038/s41477-022-01146-6. PMC 9122828. PMID 35534720. S2CID 248668428.
Liu Y, Wang S, Li L, Yang T, Dong S, Wei T, et al. (April 2022). "The Cycas genome and the early evolution of seed plants". Nature Plants. 8 (4): 389–401. Bibcode:2022NatPl...8..389L. doi:10.1038/s41477-022-01129-7. PMC 9023351. PMID 35437001. S2CID 248241496.
Warren RL, Keeling CI, Yuen MM, Raymond A, Taylor GA, Vandervalk BP, et al. (July 2015). "Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism". The Plant Journal. 83 (2): 189–212. doi:10.1111/tpj.12886. PMID 26017574. S2CID 2642832.
Amborella Genome Project (December 2013). "The Amborella genome and the evolution of flowering plants". Science. 342 (6165): 1241089. doi:10.1126/science.1241089. PMID 24357323. S2CID 202600898.
Wang N, Thomson M, Bodles WJ, Crawford RM, Hunt HV, Featherstone AW, et al. (June 2013). "Genome sequence of dwarf birch (Betula nana) and cross-species RAD markers". Molecular Ecology. 22 (11): 3098–111. Bibcode:2013MolEc..22.3098W. doi:10.1111/mec.12131. PMID 23167599. S2CID 206179485.
Wang X, Wang H, Wang J, Sun R, Wu J, Liu S, et al. (August 2011). "The genome of the mesopolyploid crop species Brassica rapa". Nature Genetics. 43 (10): 1035–9. doi:10.1038/ng.919. PMID 21873998. S2CID 205358099.
Chalhoub B, Denoeud F, Liu S, Parkin IA, Tang H, Wang X, et al. (August 2014). "Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome". Science. 345 (6199): 950–3. Bibcode:2014Sci...345..950C. doi:10.1126/science.1253435. PMID 25146293. S2CID 206556986.
- "Oilseed rape genome sequenced". L'Institut national de la recherche agronomique (Press release). Archived from the original on 2017-07-19.
- Wu Z, Chen H, Pan Y, Feng H, Fang D, Yang J, et al. (July 2022). "Genome of Hippophae rhamnoides provides insights into a conserved molecular mechanism in actinorhizal and rhizobial symbioses". The New Phytologist. 235 (1): 276–291. doi:10.1111/nph.18017. PMID 35118662. S2CID 246529299.
- Lu J, Pan C, Fan W, Liu W, Zhao H, Li D, et al. (July 2021). "A Chromosome-level Assembly of A Wild Castor Genome Provides New Insights into the Adaptive Evolution in A Tropical Desert". Genomics Proteomics Bioinformatics. S1672-0229 (21): 00162–5. doi:10.1016/j.gpb.2021.04.003. PMC 9510866. PMID 34339842. S2CID 236885144.
- Varshney RK, Song C, Saxena RK, Azam S, Yu S, Sharpe AG, et al. (March 2013). "Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement" (PDF). Nature Biotechnology. 31 (3): 240–6. doi:10.1038/nbt.2491. PMID 23354103. S2CID 6649873.
- Ugalde JM, Straube H (August 2023). "New genes on the block: Neofunctionalization of tandem duplicate genes with putative new functions in Arabidopsis". Plant Physiology. 192 (4). Oxford University Press: 2574–2576. doi:10.1093/plphys/kiad271. PMC 10400027. PMID 37158166. S2CID 258566187.
  
  This review cites this research.
  
  Jayakodi M, Golicz AA, Kreplak J, Fechete LI, Angra D, Bednář P, et al. (March 2023). "The giant diploid faba genome unlocks variation in a global protein crop". Nature. 615 (7953): 652–659. Bibcode:2023Natur.615..652J. doi:10.1038/s41586-023-05791-5. PMC 10033403. PMID 36890232.
- Bickhart DM, Koch LM, Smith TP, Riday H, Sullivan ML (2022-02-18). "Chromosome-scale assembly of the highly heterozygous genome of red clover (Trifolium pratense L.), an allogamous forage crop species". Gigabyte. 2022: 1–13. doi:10.46471/gigabyte.42. PMC 9650271. PMID 36824517. S2CID 246987248.
- Xi H, Nguyen V, Ward C, Liu Z, Searle IR (2022-01-31). "Chromosome-level assembly of the common vetch (Vicia sativa) reference genome". Gigabyte. 2022: 1–20. doi:10.46471/gigabyte.38. PMC 9650280. PMID 36824524. S2CID 246453086.
- Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, et al. (February 2011). "The genome of Theobroma cacao". Nature Genetics. 43 (2): 101–8. doi:10.1038/ng.736. PMID 21186351. S2CID 4685532.
- Voelker J, Shepherd M, Mauleon R (2021). "A high-quality draft genome for Melaleuca alternifolia (tea tree): a new platform for evolutionary genomics of myrtaceous terpene-rich species". Gigabyte. 1: 1–15. doi:10.46471/gigabyte.28. PMC 9650293. PMID 36824337. S2CID 238720658.
- Zong D, Liu H, Gan P, Ma S, Liang H, Yu J, et al. (February 2024). "Chromosomal-scale genomes of two Rosa species provide insights into genome evolution and ascorbate accumulation". The Plant Journal. 117 (4): 1264–1280. doi:10.1111/tpj.16543. PMID 37964640. S2CID 265210737.
- Zong D, Liu H, Gan P, Ma S, Liang H, Yu J, et al. (February 2024). "Chromosomal-scale genomes of two Rosa species provide insights into genome evolution and ascorbate accumulation". The Plant Journal. 117 (4): 1264–1280. doi:10.1111/tpj.16543. PMID 37964640. S2CID 265210737.
- Fan Y, Sahu SK, Yang T, Mu W, Wei J, Cheng L, et al. (November 2021). "The Clausena lansium (Wampee) genome reveal new insights into the carbazole alkaloids biosynthesis pathway". Genomics. 113 (6): 3696–3704. doi:10.1016/j.ygeno.2021.09.007. PMID 34520805. S2CID 237515315.
- Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, et al. (September 2006). "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" (PDF). Science. 313 (5793): 1596–604. Bibcode:2006Sci...313.1596T. doi:10.1126/science.1128691. OSTI 901819. PMID 16973872. S2CID 7717980.
- Chen Y, Ma T, Zhang L, Kang M, Zhang Z, Zheng Z, et al. (January 2020). "Genomic analyses of a "living fossil": The endangered dove-tree". Molecular Ecology Resources. 20 (3): 756–769. doi:10.1111/1755-0998.13138. PMID 31970919. S2CID 210865226.
- Canales NA, Pérez-Escobar OA, Powell RF, Töpel M, Kidner C, Nesbitt M, et al. (2022-10-06). "A highly contiguous, scaffold-level nuclear genome assembly for the fever tree (Cinchona pubescens Vahl) as a novel resource for Rubiaceae research". Gigabyte. 2022: 1–16. doi:10.46471/gigabyte.71. PMC 10027117. PMID 36950143. S2CID 252810685.
- Mayer KF, Waugh R, Brown JW, Schulman A, Langridge P, Platzer M, et al. (November 2012). "A physical, genetic and functional sequence assembly of the barley genome" (PDF). Nature. 491 (7426): 711–6. Bibcode:2012Natur.491..711T. doi:10.1038/nature11543. hdl:2440/76951. PMID 23075845. S2CID 10170672.
- Hurwitz BL, Kudrna D, Yu Y, Sebastian A, Zuccolo A, Jackson SA, et al. (September 2010). "Rice structural variation: a comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza". The Plant Journal. 63 (6): 990–1003. doi:10.1111/j.1365-313X.2010.04293.x. PMID 20626650. S2CID 8637330.
- Yu J, Hu S, Wang J, Wong GK, Li S, Liu B, et al. (April 2002). "A draft sequence of the rice genome (Oryza sativa L. ssp. indica)". Science. 296 (5565): 79–92. Bibcode:2002Sci...296...79Y. doi:10.1126/science.1068037. PMID 11935017. S2CID 208529258.
- Goff SA, Ricke D, Lan TH, Presting G, Wang R, Dunn M, et al. (April 2002). "A draft sequence of the rice genome (Oryza sativa L. ssp. japonica)". Science. 296 (5565): 92–100. Bibcode:2002Sci...296...92G. doi:10.1126/science.1068275. PMID 11935018. S2CID 2960202.
- Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, et al. (January 2009). "The Sorghum bicolor genome and the diversification of grasses". Nature. 457 (7229): 551–6. Bibcode:2009Natur.457..551P. doi:10.1038/nature07723. PMID 19189423. S2CID 4382410.
- Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, et al. (November 2009). "The B73 maize genome: complexity, diversity, and dynamics". Science. 326 (5956): 1112–5. Bibcode:2009Sci...326.1112S. doi:10.1126/science.1178534. PMID 19965430. S2CID 21433160.

solgenomics.net

sunflowergenome.org

unl.edu

Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, et al. (January 2010). "Genome sequence of the palaeopolyploid soybean". Nature. 463 (7278): 178–83. Bibcode:2010Natur.463..178S. doi:10.1038/nature08670. PMID 20075913.

uwa.edu.au

Appels R, Eversole K, Feuillet C, Keller B, Rogers J, Stein N, et al. (International Wheat Genome Sequencing Consortium) (August 2018). "Shifting the limits in wheat research and breeding using a fully annotated reference genome". Science. 361 (6403): 705. doi:10.1126/science.aar7191. hdl:10261/169166. PMID 30115783.

web.archive.org

"Amborella Genome Database". Penn State University. Archived from the original on 2013-06-28.
"Aquilegia caerulea". Phytozome v9.1. Archived from the original on 2015-02-20. Retrieved 2013-07-10.
"Updated Col-0 Genome Annotation (Araport11 Official Release) Updated Jun 2016 | Araport". www.araport.org. Archived from the original on 2019-07-19. Retrieved 2019-03-18.
Chalhoub B, Denoeud F, Liu S, Parkin IA, Tang H, Wang X, et al. (August 2014). "Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome". Science. 345 (6199): 950–3. Bibcode:2014Sci...345..950C. doi:10.1126/science.1253435. PMID 25146293. S2CID 206556986.
- "Oilseed rape genome sequenced". L'Institut national de la recherche agronomique (Press release). Archived from the original on 2017-07-19.
- "Capsella rubella". Phytozome v9.1. Archived from the original on 2015-04-26. Retrieved 2013-07-09.
- "Phaseolus vulgaris v1.0". Phytozome v9.1. Archived from the original on 2015-04-15. Retrieved 2013-07-09.
- "Gossypium raimondii v2.1". Phytozome v9.1. Archived from the original on 2015-02-18. Retrieved 2013-07-10.
- "Citrus clementina". Phytozome v9.1. Archived from the original on 2015-02-19. Retrieved 2013-07-10.
- "Mimulus guttatus". Phytozome v9.1. Archived from the original on 16 February 2015.
- "The Petunia Platform". Archived from the original on 9 January 2011.
- "Panicum virgatum". Phytozome v9.1. Archived from the original on 2015-02-19. Retrieved 2013-07-10.

worldcat.org

zenodo.org

List of sequenced plant genomes (English Wikipedia)

amborella.org

araport.org

ashgenome.org

bbc.co.uk

canada.ca

nrc-publications.canada.ca

currentscience.ac.in

doe.gov

phytozome-next.jgi.doe.gov

phytozome.jgi.doe.gov

doi.org

doi.org

dx.doi.org

erysimum.org

escholarship.org

gbif.org

gigabytejournal.com

gigadb.org

gramene.org

news.gramene.org

handle.net

hdl.handle.net

harvard.edu

ui.adsabs.harvard.edu

iastate.edu

dr.lib.iastate.edu

icrisat.org

oar.icrisat.org

inra.fr

presse.inra.fr

jgi-psf.org

genome.jgi-psf.org

maizesequence.org

msu.edu

solanaceae.plantbiology.msu.edu

nih.gov

pubmed.ncbi.nlm.nih.gov

ncbi.nlm.nih.gov

okayama-u.ac.jp

ousar.lib.okayama-u.ac.jp

osti.gov

petuniaplatform.net

phytozome.net

semanticscholar.org

api.semanticscholar.org

solgenomics.net

sunflowergenome.org

unl.edu

digitalcommons.unl.edu

uwa.edu.au

research-repository.uwa.edu.au

web.archive.org

worldcat.org

search.worldcat.org

zenodo.org