Mathematical and theoretical biology (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Mathematical and theoretical biology" in English language version.

refsWebsite

Global rank English rank

20web.archive.org

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15doi.org

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14nih.gov

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5semanticscholar.org

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4harvard.edu

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4books.google.com

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4planetphysics.org

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4ox.ac.uk

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3cogprints.org

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3gla.ac.uk

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2utoronto.ca

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2hw.ac.uk

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2vt.edu

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1bath.ac.uk

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1mcmaster.ca

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1ens.fr

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1arxiv.org

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1worldcat.org

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1acube.org

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1archives-ouvertes.fr

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879^th place

1princeton.edu

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1bjcancer.org

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1cern.ch

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1pagesperso-orange.fr

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1wolfram.com

513^th place

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1theorylab.org

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1polito.it

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1archive.org

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1ubc.ca

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1jstor.org

26^th place

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1bme.hu

low place

acube.org

Jungck JR (May 1997). "Ten equations that changed biology: mathematics in problem-solving biology curricula" (PDF). Bioscene. 23 (1): 11–36. Archived from the original (PDF) on 2009-03-26.

archive.org

Trappenberg TP (2002). Fundamentals of Computational Neuroscience. United States: Oxford University Press Inc. pp. 1. ISBN 978-0-19-851582-1.

archives-ouvertes.fr

hal.archives-ouvertes.fr

Montévil M, Mossio M (May 2015). "Biological organisation as closure of constraints" (PDF). Journal of Theoretical Biology. 372: 179–91. Bibcode:2015JThBi.372..179M. doi:10.1016/j.jtbi.2015.02.029. PMID 25752259. S2CID 4654439.

arxiv.org

Montévil M, Speroni L, Sonnenschein C, Soto AM (October 2016). "Modeling mammary organogenesis from biological first principles: Cells and their physical constraints". Progress in Biophysics and Molecular Biology. From the Century of the Genome to the Century of the Organism: New Theoretical Approaches. 122 (1): 58–69. arXiv:1702.03337. doi:10.1016/j.pbiomolbio.2016.08.004. PMC 5563449. PMID 27544910.

bath.ac.uk

"What is mathematical biology | Centre for Mathematical Biology | University of Bath". www.bath.ac.uk. Archived from the original on 2018-09-23. Retrieved 2018-06-07.

bjcancer.org

library.bjcancer.org

Preziosi L (2003). Cancer Modelling and Simulation (PDF). Chapman Hall/CRC Press. ISBN 1-58488-361-8. Archived from the original (PDF) on March 10, 2012.

bme.hu

cellcycle.mkt.bme.hu

"The Molecular Network Dynamics Research Group". Budapest University of Technology and Economics. Archived from the original on 2012-02-10.

books.google.com

Keller EF (2002). Making Sense of Life: Explaining Biological Development with Models, Metaphors and Machines. Harvard University Press. ISBN 978-0674012509.
Preston K, Duff MJ (1985-02-28). Modern Cellular Automata. Springer. ISBN 9780306417375.
Churchland PS, Koch C, Sejnowski TJ (March 1994). "What Is Computational Neuroscience?". In Gutfreund H, Toulouse G (eds.). Biology And Computation: A Physicist's Choice. Vol. 3. World Scientific. pp. 25–34. ISBN 9789814504140.
Semple C (2003). SAC Phylogenetics. Oxford University Press. ISBN 978-0-19-850942-4.

cern.ch

cdsweb.cern.ch

Witten M, ed. (1986). "Computer Models and Automata Theory in Biology and Medicine" (PDF). Mathematical Modeling : Mathematical Models in Medicine. Vol. 7. New York: Pergamon Press. pp. 1513–1577.

cogprints.org

Baianu IC (2004). "Łukasiewicz-Topos Models of Neural Networks, Cell Genome and Interactome Nonlinear Dynamic Models" (PDF). Archived from the original on 2007-07-13. Retrieved 2011-08-07.
Baianu IC (1987). "Computer Models and Automata Theory in Biology and Medicine". In Witten M (ed.). Mathematical Models in Medicine. Vol. 7. New York: Pergamon Press. pp. 1513–1577.
"Natural Transformations Models in Molecular Biology". SIAM and Society of Mathematical Biology, National Meeting. N/A. Bethesda, MD: 230–232. 1983.

doi.org

Longo G, Soto AM (October 2016). "Why do we need theories?" (PDF). Progress in Biophysics and Molecular Biology. From the Century of the Genome to the Century of the Organism: New Theoretical Approaches. 122 (1): 4–10. doi:10.1016/j.pbiomolbio.2016.06.005. PMC 5501401. PMID 27390105.
Montévil M, Speroni L, Sonnenschein C, Soto AM (October 2016). "Modeling mammary organogenesis from biological first principles: Cells and their physical constraints". Progress in Biophysics and Molecular Biology. From the Century of the Genome to the Century of the Organism: New Theoretical Approaches. 122 (1): 58–69. arXiv:1702.03337. doi:10.1016/j.pbiomolbio.2016.08.004. PMC 5563449. PMID 27544910.
Robeva R, Davies R, Hodge T, Enyedi A (Fall 2010). "Mathematical biology modules based on modern molecular biology and modern discrete mathematics". CBE: Life Sciences Education. 9 (3). The American Society for Cell Biology: 227–40. doi:10.1187/cbe.10-03-0019. PMC 2931670. PMID 20810955.
Mallet J (July 2001). "Mimicry: an interface between psychology and evolution". Proceedings of the National Academy of Sciences of the United States of America. 98 (16): 8928–30. Bibcode:2001PNAS...98.8928M. doi:10.1073/pnas.171326298. PMC 55348. PMID 11481461.
Reed M (November 2015). "Mathematical Biology is Good for Mathematics". Notices of the AMS. 62 (10): 1172–1176. doi:10.1090/noti1288.
Baianu IC, Brown R, Georgescu G, Glazebrook JF (2006). "Complex Non-linear Biodynamics in Categories, Higher Dimensional Algebra and Łukasiewicz–Moisil Topos: Transformations of Neuronal, Genetic and Neoplastic Networks". Axiomathes. 16 (1–2): 65–122. doi:10.1007/s10516-005-3973-8. S2CID 9907900.
Baianu I, Prisecaru V (April 2012). "Complex Systems Analysis of Arrested Neural Cell Differentiation during Development and Analogous Cell Cycling Models in Carcinogenesis". Nature Precedings. doi:10.1038/npre.2012.7101.1.
Montévil M, Mossio M (May 2015). "Biological organisation as closure of constraints" (PDF). Journal of Theoretical Biology. 372: 179–91. Bibcode:2015JThBi.372..179M. doi:10.1016/j.jtbi.2015.02.029. PMID 25752259. S2CID 4654439.
Wang Y, Brodin E, Nishii K, Frieboes HB, Mumenthaler SM, Sparks JL, Macklin P (January 2021). "Impact of tumor-parenchyma biomechanics on liver metastatic progression: a multi-model approach". Scientific Reports. 11 (1): 1710. Bibcode:2021NatSR..11.1710W. doi:10.1038/s41598-020-78780-7. PMC 7813881. PMID 33462259.
Oprisan SA, Oprisan A (2006). "A Computational Model of Oncogenesis using the Systemic Approach". Axiomathes. 16 (1–2): 155–163. doi:10.1007/s10516-005-4943-x. S2CID 119637285.
Kuznetsov AV, Avramenko AA (April 2009). "A macroscopic model of traffic jams in axons". Mathematical Biosciences. 218 (2): 142–52. doi:10.1016/j.mbs.2009.01.005. PMID 19563741.
Wolkenhauer O, Ullah M, Kolch W, Cho KH (September 2004). "Modeling and simulation of intracellular dynamics: choosing an appropriate framework". IEEE Transactions on NanoBioscience. 3 (3): 200–7. doi:10.1109/TNB.2004.833694. PMID 15473072. S2CID 1829220.
Fussenegger M, Bailey JE, Varner J (July 2000). "A mathematical model of caspase function in apoptosis". Nature Biotechnology. 18 (2): 768–74. doi:10.1038/77589. PMID 10888847. S2CID 52802267.
Noè U, Chen WW, Filippone M, Hill N, Husmeier D (2017). "Inference in a Partial Differential Equations Model of Pulmonary Arterial and Venous Blood Circulation using Statistical Emulation" (PDF). 13th International Conference on Computational Intelligence Methods for Bioinformatics and Biostatistics, Stirling, UK, 1–3 Sep 2016. Lecture Notes in Computer Science. Vol. 10477. pp. 184–198. doi:10.1007/978-3-319-67834-4_15. ISBN 9783319678337.
Hurlbert SH (1990). "Spatial Distribution of the Montane Unicorn". Oikos. 58 (3): 257–271. Bibcode:1990Oikos..58..257H. doi:10.2307/3545216. JSTOR 3545216.

ens.fr

di.ens.fr

Longo G, Soto AM (October 2016). "Why do we need theories?" (PDF). Progress in Biophysics and Molecular Biology. From the Century of the Genome to the Century of the Organism: New Theoretical Approaches. 122 (1): 4–10. doi:10.1016/j.pbiomolbio.2016.06.005. PMC 5501401. PMID 27390105.

gla.ac.uk

maths.gla.ac.uk

"Research in Mathematical Biology". Maths.gla.ac.uk. Retrieved 2008-09-10.
Ogden R (2004-07-02). "rwo_research_details". Maths.gla.ac.uk. Archived from the original on 2009-02-02. Retrieved 2010-03-17.

eprints.gla.ac.uk

Noè U, Chen WW, Filippone M, Hill N, Husmeier D (2017). "Inference in a Partial Differential Equations Model of Pulmonary Arterial and Venous Blood Circulation using Statistical Emulation" (PDF). 13th International Conference on Computational Intelligence Methods for Bioinformatics and Biostatistics, Stirling, UK, 1–3 Sep 2016. Lecture Notes in Computer Science. Vol. 10477. pp. 184–198. doi:10.1007/978-3-319-67834-4_15. ISBN 9783319678337.

harvard.edu

ui.adsabs.harvard.edu

Mallet J (July 2001). "Mimicry: an interface between psychology and evolution". Proceedings of the National Academy of Sciences of the United States of America. 98 (16): 8928–30. Bibcode:2001PNAS...98.8928M. doi:10.1073/pnas.171326298. PMC 55348. PMID 11481461.
Montévil M, Mossio M (May 2015). "Biological organisation as closure of constraints" (PDF). Journal of Theoretical Biology. 372: 179–91. Bibcode:2015JThBi.372..179M. doi:10.1016/j.jtbi.2015.02.029. PMID 25752259. S2CID 4654439.
Wang Y, Brodin E, Nishii K, Frieboes HB, Mumenthaler SM, Sparks JL, Macklin P (January 2021). "Impact of tumor-parenchyma biomechanics on liver metastatic progression: a multi-model approach". Scientific Reports. 11 (1): 1710. Bibcode:2021NatSR..11.1710W. doi:10.1038/s41598-020-78780-7. PMC 7813881. PMID 33462259.
Hurlbert SH (1990). "Spatial Distribution of the Montane Unicorn". Oikos. 58 (3): 257–271. Bibcode:1990Oikos..58..257H. doi:10.2307/3545216. JSTOR 3545216.

hw.ac.uk

ma.hw.ac.uk

"Jonathan Sherratt's Research Interests". Ma.hw.ac.uk. Retrieved 2010-03-17.
"Jonathan Sherratt's Research: Scar Formation". Ma.hw.ac.uk. Retrieved 2010-03-17.

jstor.org

Hurlbert SH (1990). "Spatial Distribution of the Montane Unicorn". Oikos. 58 (3): 257–271. Bibcode:1990Oikos..58..257H. doi:10.2307/3545216. JSTOR 3545216.

mcmaster.ca

life.biology.mcmaster.ca

"There is a subtle difference between mathematical biologists and theoretical biologists. Mathematical biologists tend to be employed in mathematical departments and to be a bit more interested in math inspired by biology than in the biological problems themselves, and vice versa." Careers in theoretical biology Archived 2019-09-14 at the Wayback Machine

nih.gov

pubmed.ncbi.nlm.nih.gov

Longo G, Soto AM (October 2016). "Why do we need theories?" (PDF). Progress in Biophysics and Molecular Biology. From the Century of the Genome to the Century of the Organism: New Theoretical Approaches. 122 (1): 4–10. doi:10.1016/j.pbiomolbio.2016.06.005. PMC 5501401. PMID 27390105.
Montévil M, Speroni L, Sonnenschein C, Soto AM (October 2016). "Modeling mammary organogenesis from biological first principles: Cells and their physical constraints". Progress in Biophysics and Molecular Biology. From the Century of the Genome to the Century of the Organism: New Theoretical Approaches. 122 (1): 58–69. arXiv:1702.03337. doi:10.1016/j.pbiomolbio.2016.08.004. PMC 5563449. PMID 27544910.
Robeva R, Davies R, Hodge T, Enyedi A (Fall 2010). "Mathematical biology modules based on modern molecular biology and modern discrete mathematics". CBE: Life Sciences Education. 9 (3). The American Society for Cell Biology: 227–40. doi:10.1187/cbe.10-03-0019. PMC 2931670. PMID 20810955.
Mallet J (July 2001). "Mimicry: an interface between psychology and evolution". Proceedings of the National Academy of Sciences of the United States of America. 98 (16): 8928–30. Bibcode:2001PNAS...98.8928M. doi:10.1073/pnas.171326298. PMC 55348. PMID 11481461.
Montévil M, Mossio M (May 2015). "Biological organisation as closure of constraints" (PDF). Journal of Theoretical Biology. 372: 179–91. Bibcode:2015JThBi.372..179M. doi:10.1016/j.jtbi.2015.02.029. PMID 25752259. S2CID 4654439.
Wang Y, Brodin E, Nishii K, Frieboes HB, Mumenthaler SM, Sparks JL, Macklin P (January 2021). "Impact of tumor-parenchyma biomechanics on liver metastatic progression: a multi-model approach". Scientific Reports. 11 (1): 1710. Bibcode:2021NatSR..11.1710W. doi:10.1038/s41598-020-78780-7. PMC 7813881. PMID 33462259.
Kuznetsov AV, Avramenko AA (April 2009). "A macroscopic model of traffic jams in axons". Mathematical Biosciences. 218 (2): 142–52. doi:10.1016/j.mbs.2009.01.005. PMID 19563741.
Wolkenhauer O, Ullah M, Kolch W, Cho KH (September 2004). "Modeling and simulation of intracellular dynamics: choosing an appropriate framework". IEEE Transactions on NanoBioscience. 3 (3): 200–7. doi:10.1109/TNB.2004.833694. PMID 15473072. S2CID 1829220.
Fussenegger M, Bailey JE, Varner J (July 2000). "A mathematical model of caspase function in apoptosis". Nature Biotechnology. 18 (2): 768–74. doi:10.1038/77589. PMID 10888847. S2CID 52802267.

ncbi.nlm.nih.gov

Longo G, Soto AM (October 2016). "Why do we need theories?" (PDF). Progress in Biophysics and Molecular Biology. From the Century of the Genome to the Century of the Organism: New Theoretical Approaches. 122 (1): 4–10. doi:10.1016/j.pbiomolbio.2016.06.005. PMC 5501401. PMID 27390105.
Montévil M, Speroni L, Sonnenschein C, Soto AM (October 2016). "Modeling mammary organogenesis from biological first principles: Cells and their physical constraints". Progress in Biophysics and Molecular Biology. From the Century of the Genome to the Century of the Organism: New Theoretical Approaches. 122 (1): 58–69. arXiv:1702.03337. doi:10.1016/j.pbiomolbio.2016.08.004. PMC 5563449. PMID 27544910.
Robeva R, Davies R, Hodge T, Enyedi A (Fall 2010). "Mathematical biology modules based on modern molecular biology and modern discrete mathematics". CBE: Life Sciences Education. 9 (3). The American Society for Cell Biology: 227–40. doi:10.1187/cbe.10-03-0019. PMC 2931670. PMID 20810955.
Mallet J (July 2001). "Mimicry: an interface between psychology and evolution". Proceedings of the National Academy of Sciences of the United States of America. 98 (16): 8928–30. Bibcode:2001PNAS...98.8928M. doi:10.1073/pnas.171326298. PMC 55348. PMID 11481461.
Wang Y, Brodin E, Nishii K, Frieboes HB, Mumenthaler SM, Sparks JL, Macklin P (January 2021). "Impact of tumor-parenchyma biomechanics on liver metastatic progression: a multi-model approach". Scientific Reports. 11 (1): 1710. Bibcode:2021NatSR..11.1710W. doi:10.1038/s41598-020-78780-7. PMC 7813881. PMID 33462259.

ox.ac.uk

maths.ox.ac.uk

"Travelling waves in a wound". Maths.ox.ac.uk. Archived from the original on 2008-06-06. Retrieved 2010-03-17.
"The mechanochemical theory of morphogenesis". Maths.ox.ac.uk. Archived from the original on 2008-06-06. Retrieved 2010-03-17.
"Biological pattern formation". Maths.ox.ac.uk. Archived from the original on 2004-11-12. Retrieved 2010-03-17.

integrativebiology.ox.ac.uk

"Integrative Biology – Heart Modelling". Integrativebiology.ox.ac.uk. Archived from the original on 2009-01-13. Retrieved 2010-03-17.

pagesperso-orange.fr

vbm-ehr.pagesperso-orange.fr

Kainen PC (2005). "Category Theory and Living Systems" (PDF). In Ehresmann A (ed.). Charles Ehresmann's Centennial Conference Proceedings. University of Amiens, France, October 7–9th, 2005. pp. 1–5.{{cite book}}: CS1 maint: location (link) CS1 maint: location missing publisher (link)

planetphysics.org

"bibliography for category theory/algebraic topology applications in physics". PlanetPhysics. Archived from the original on 2016-01-07. Retrieved 2010-03-17.
"bibliography for mathematical biophysics and mathematical medicine". PlanetPhysics. 2009-01-24. Archived from the original on 2016-01-07. Retrieved 2010-03-17.
"molecular set category". PlanetPhysics. Archived from the original on 2016-01-07. Retrieved 2010-03-17.
"Abstract Relational Biology (ARB)". Archived from the original on 2016-01-07.

polito.it

calvino.polito.it

"MCRTN – About tumour modelling project". Calvino.polito.it. Retrieved 2010-03-17.

princeton.edu

Barnett MP (2006). "Symbolic calculation in the life sciences: trends and prospects" (PDF). In Anai H, Horimoto K (eds.). Algebraic Biology 2005. Computer Algebra in Biology. Tokyo: Universal Academy Press. Archived from the original (PDF) on 2006-06-16.

semanticscholar.org

api.semanticscholar.org

Baianu IC, Brown R, Georgescu G, Glazebrook JF (2006). "Complex Non-linear Biodynamics in Categories, Higher Dimensional Algebra and Łukasiewicz–Moisil Topos: Transformations of Neuronal, Genetic and Neoplastic Networks". Axiomathes. 16 (1–2): 65–122. doi:10.1007/s10516-005-3973-8. S2CID 9907900.
Montévil M, Mossio M (May 2015). "Biological organisation as closure of constraints" (PDF). Journal of Theoretical Biology. 372: 179–91. Bibcode:2015JThBi.372..179M. doi:10.1016/j.jtbi.2015.02.029. PMID 25752259. S2CID 4654439.
Oprisan SA, Oprisan A (2006). "A Computational Model of Oncogenesis using the Systemic Approach". Axiomathes. 16 (1–2): 155–163. doi:10.1007/s10516-005-4943-x. S2CID 119637285.
Wolkenhauer O, Ullah M, Kolch W, Cho KH (September 2004). "Modeling and simulation of intracellular dynamics: choosing an appropriate framework". IEEE Transactions on NanoBioscience. 3 (3): 200–7. doi:10.1109/TNB.2004.833694. PMID 15473072. S2CID 1829220.
Fussenegger M, Bailey JE, Varner J (July 2000). "A mathematical model of caspase function in apoptosis". Nature Biotechnology. 18 (2): 768–74. doi:10.1038/77589. PMID 10888847. S2CID 52802267.

theorylab.org

"Computer models and automata theory in biology and medicine | KLI Theory Lab". Theorylab.org. 2009-05-26. Archived from the original on 2011-07-28. Retrieved 2010-03-17.

ubc.ca

math.ubc.ca

"Leah Edelstein-Keshet: Research Interests f". Archived from the original on 2007-06-12. Retrieved 2005-02-26.

utoronto.ca

tspace.library.utoronto.ca

Lin HC (2004). "Computer Simulations and the Question of Computability of Biological Systems" (PDF).
Baianu IC (2004). "Quantum Interactomics and Cancer Mechanisms" (PDF). Research Report Communicated to the Institute of Genomic Biology, University of Illinois at Urbana.

vt.edu

mpf.biol.vt.edu

"Tyson Lab". Archived from the original on July 28, 2007.
"The JJ Tyson Lab". Virginia Tech. Archived from the original on 2007-07-28. Retrieved 2008-09-10.

web.archive.org

"What is mathematical biology | Centre for Mathematical Biology | University of Bath". www.bath.ac.uk. Archived from the original on 2018-09-23. Retrieved 2018-06-07.
"There is a subtle difference between mathematical biologists and theoretical biologists. Mathematical biologists tend to be employed in mathematical departments and to be a bit more interested in math inspired by biology than in the biological problems themselves, and vice versa." Careers in theoretical biology Archived 2019-09-14 at the Wayback Machine
Baianu IC (2004). "Łukasiewicz-Topos Models of Neural Networks, Cell Genome and Interactome Nonlinear Dynamic Models" (PDF). Archived from the original on 2007-07-13. Retrieved 2011-08-07.
Jungck JR (May 1997). "Ten equations that changed biology: mathematics in problem-solving biology curricula" (PDF). Bioscene. 23 (1): 11–36. Archived from the original (PDF) on 2009-03-26.
Barnett MP (2006). "Symbolic calculation in the life sciences: trends and prospects" (PDF). In Anai H, Horimoto K (eds.). Algebraic Biology 2005. Computer Algebra in Biology. Tokyo: Universal Academy Press. Archived from the original (PDF) on 2006-06-16.
Preziosi L (2003). Cancer Modelling and Simulation (PDF). Chapman Hall/CRC Press. ISBN 1-58488-361-8. Archived from the original (PDF) on March 10, 2012.
"bibliography for category theory/algebraic topology applications in physics". PlanetPhysics. Archived from the original on 2016-01-07. Retrieved 2010-03-17.
"bibliography for mathematical biophysics and mathematical medicine". PlanetPhysics. 2009-01-24. Archived from the original on 2016-01-07. Retrieved 2010-03-17.
"Computer models and automata theory in biology and medicine | KLI Theory Lab". Theorylab.org. 2009-05-26. Archived from the original on 2011-07-28. Retrieved 2010-03-17.
Ogden R (2004-07-02). "rwo_research_details". Maths.gla.ac.uk. Archived from the original on 2009-02-02. Retrieved 2010-03-17.
"Tyson Lab". Archived from the original on July 28, 2007.
"Integrative Biology – Heart Modelling". Integrativebiology.ox.ac.uk. Archived from the original on 2009-01-13. Retrieved 2010-03-17.
"Travelling waves in a wound". Maths.ox.ac.uk. Archived from the original on 2008-06-06. Retrieved 2010-03-17.
"Leah Edelstein-Keshet: Research Interests f". Archived from the original on 2007-06-12. Retrieved 2005-02-26.
"The mechanochemical theory of morphogenesis". Maths.ox.ac.uk. Archived from the original on 2008-06-06. Retrieved 2010-03-17.
"Biological pattern formation". Maths.ox.ac.uk. Archived from the original on 2004-11-12. Retrieved 2010-03-17.
"molecular set category". PlanetPhysics. Archived from the original on 2016-01-07. Retrieved 2010-03-17.
"Abstract Relational Biology (ARB)". Archived from the original on 2016-01-07.
"The JJ Tyson Lab". Virginia Tech. Archived from the original on 2007-07-28. Retrieved 2008-09-10.
"The Molecular Network Dynamics Research Group". Budapest University of Technology and Economics. Archived from the original on 2012-02-10.

wolfram.com

mathworld.wolfram.com

"Dual Tessellation – from Wolfram MathWorld". Mathworld.wolfram.com. 2010-03-03. Retrieved 2010-03-17.

worldcat.org

Ian Stewart (1998), Life's Other Secret: The New Mathematics of the Living World, New York: John Wiley, ISBN 978-0471158455