Metatranscriptomics (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Metatranscriptomics" in English language version.

refsWebsite

Global rank English rank

56nih.gov

4^th place

36doi.org

2^nd place

6harvard.edu

18^th place

17^th place

5semanticscholar.org

11^th place

8^th place

3handle.net

102^nd place

76^th place

1uni-wuerzburg.de

9,726^th place

low place

doi.org (Global: 2^nd place; English: 2^nd place)

Filiatrault MJ (October 2011). "Progress in prokaryotic transcriptomics". Current Opinion in Microbiology. 14 (5): 579–86. doi:10.1016/j.mib.2011.07.023. PMID 21839669.
Bashiardes S, Zilberman-Schapira G, Elinav E (2016). "Use of Metatranscriptomics in Microbiome Research". Bioinformatics and Biology Insights. 10: 19–25. doi:10.4137/BBI.S34610. PMC 4839964. PMID 27127406.
Moran MA (2009). "Metatranscriptomics: eavesdropping on complex microbial communities". Microbe Magazine. 4 (7): 329–34. doi:10.1128/microbe.4.329.1.
Apirion D, Miczak A (February 1993). "RNA processing in prokaryotic cells". BioEssays. 15 (2): 113–20. doi:10.1002/bies.950150207. PMID 7682412. S2CID 42365781.
Dumont MG, Pommerenke B, Casper P (October 2013). "Using stable isotope probing to obtain a targeted metatranscriptome of aerobic methanotrophs in lake sediment". Environmental Microbiology Reports. 5 (5): 757–64. doi:10.1111/1758-2229.12078. PMID 24115627.
Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, et al. (May 2011). "Full-length transcriptome assembly from RNA-Seq data without a reference genome". Nature Biotechnology. 29 (7): 644–52. doi:10.1038/nbt.1883. PMC 3571712. PMID 21572440.
Li B, Dewey CN (2011). "Rsem: accurate transcript quantification from RNA-seq data with or without a reference genome". BMC Bioinformatics. 12 (1): 323. doi:10.1186/1471-2105-12-323. PMC 3163565. PMID 21816040.
Haas BJ, Papanicolaou A, Yassour M, Grabherr M, Blood PD, Bowden J, Couger MB, Eccles D, Li B, Lieber M, MacManes MD, Ott M, Orvis J, Pochet N, Strozzi F, Weeks N, Westerman R, William T, Dewey CN, Henschel R, LeDuc RD, Friedman N, Regev A (August 2013). "De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis". Nature Protocols. 8 (8): 1494–512. doi:10.1038/nprot.2013.084. PMC 3875132. PMID 23845962.
De Bona F, Ossowski S, Schneeberger K, Rätsch G (August 2008). "Optimal spliced alignments of short sequence reads". Bioinformatics. 24 (16): i174–80. doi:10.1093/bioinformatics/btn300. PMID 18689821.
Leimena MM, Ramiro-Garcia J, Davids M, van den Bogert B, Smidt H, Smid EJ, Boekhorst J, Zoetendal EG, Schaap PJ, Kleerebezem M (2013). "A comprehensive metatranscriptome analysis pipeline and its validation using human small intestine microbiota datasets". BMC Genomics. 14 (1): 530. doi:10.1186/1471-2164-14-530. PMC 3750648. PMID 23915218.
Yost S, Duran-Pinedo AE, Teles R, Krishnan K, Frias-Lopez J (December 2015). "Functional signatures of oral dysbiosis during periodontitis progression revealed by microbial metatranscriptome analysis". Genome Medicine. 7 (1): 27. doi:10.1186/s13073-015-0153-3. PMC 4410737. PMID 25918553.
Yost S, Duran-Pinedo AE, Teles R, Krishnan K, Frias-Lopez J (2015). "Functional signatures of oral dysbiosis during periodontitis progression revealed by microbial metatranscriptome analysis". Genome Medicine. 7 (1): 27. doi:10.1186/s13073-015-0153-3. PMC 4410737. PMID 25918553.
Duran-Pinedo AE, Chen T, Teles R, Starr JR, Wang X, Krishnan K, Frias-Lopez J (August 2014). "Community-wide transcriptome of the oral microbiome in subjects with and without periodontitis". The ISME Journal. 8 (8): 1659–72. doi:10.1038/ismej.2014.23. PMC 4817619. PMID 24599074.
Jorth P, Turner KH, Gumus P, Nizam N, Buduneli N, Whiteley M (April 2014). "Metatranscriptomics of the human oral microbiome during health and disease". mBio. 5 (2): e01012–14. doi:10.1128/mBio.01012-14. PMC 3977359. PMID 24692635.
Xiong X, Frank DN, Robertson CE, Hung SS, Markle J, Canty AJ, McCoy KD, Macpherson AJ, Poussier P, Danska JS, Parkinson J (2012). "Generation and analysis of a mouse intestinal metatranscriptome through Illumina based RNA-sequencing". PLOS ONE. 7 (4) e36009. Bibcode:2012PLoSO...736009X. doi:10.1371/journal.pone.0036009. PMC 3338770. PMID 22558305.
Niu SY, Yang J, McDermaid A, Zhao J, Kang Y, Ma Q (November 2018). "Bioinformatics tools for quantitative and functional metagenome and metatranscriptome data analysis in microbes". Briefings in Bioinformatics. 19 (6): 1415–1429. doi:10.1093/bib/bbx051. PMID 28481971.
Franzosa EA, McIver LJ, Rahnavard G, Thompson LR, Schirmer M, Weingart G, Lipson KS, Knight R, Caporaso JG, Segata N, Huttenhower C (November 2018). "Species-level functional profiling of metagenomes and metatranscriptomes". Nature Methods. 15 (11): 962–968. doi:10.1038/s41592-018-0176-y. PMC 6235447. PMID 30377376.
Martinez X, Pozuelo M, Pascal V, Campos D, Gut I, Gut M, Azpiroz F, Guarner F, Manichanh C (May 2016). "MetaTrans: an open-source pipeline for metatranscriptomics". Scientific Reports. 6 26447. Bibcode:2016NatSR...626447M. doi:10.1038/srep26447. PMC 4876386. PMID 27211518.
Westreich ST, Korf I, Mills DA, Lemay DG (September 2016). "SAMSA: a comprehensive metatranscriptome analysis pipeline". BMC Bioinformatics. 17 (1): 399. doi:10.1186/s12859-016-1270-8. PMC 5041328. PMID 27687690.
Milanese, et al. (2019). "Microbial abundance, activity and population genomic profiling with mOTUs2". Nature Communications. 10 (1): 1014. Bibcode:2019NatCo..10.1014M. doi:10.1038/s41467-019-08844-4. PMC 6399450. PMID 30833550.
Karasov WH, Martínez del Rio C, Caviedes-Vidal E (2011). "Ecological physiology of diet and digestive systems". Annual Review of Physiology. 73: 69–93. doi:10.1146/annurev-physiol-012110-142152. hdl:11336/14704. PMID 21314432.
LeBlanc JG, Milani C, de Giori GS, Sesma F, van Sinderen D, Ventura M (April 2013). "Bacteria as vitamin suppliers to their host: a gut microbiota perspective". Current Opinion in Biotechnology. 24 (2): 160–8. doi:10.1016/j.copbio.2012.08.005. hdl:11336/2561. PMID 22940212.
Claus SP, Guillou H, Ellero-Simatos S (2016). "The gut microbiota: a major player in the toxicity of environmental pollutants?". npj Biofilms and Microbiomes. 2: 16003. doi:10.1038/npjbiofilms.2016.3. PMC 5515271. PMID 28721242.
Kamada N, Seo SU, Chen GY, Núñez G (May 2013). "Role of the gut microbiota in immunity and inflammatory disease". Nature Reviews. Immunology. 13 (5): 321–35. doi:10.1038/nri3430. PMID 23618829. S2CID 205491968.
Abreu MT (February 2010). "Toll-like receptor signalling in the intestinal epithelium: how bacterial recognition shapes intestinal function". Nature Reviews. Immunology. 10 (2): 131–44. doi:10.1038/nri2707. PMID 20098461. S2CID 21789611.
Sommer F, Bäckhed F (April 2013). "The gut microbiota--masters of host development and physiology". Nature Reviews. Microbiology. 11 (4): 227–38. doi:10.1038/nrmicro2974. PMID 23435359. S2CID 22798964.
Hooper LV, Littman DR, Macpherson AJ (June 2012). "Interactions between the microbiota and the immune system". Science. 336 (6086): 1268–73. Bibcode:2012Sci...336.1268H. doi:10.1126/science.1223490. PMC 4420145. PMID 22674334.
Gosalbes MJ, Durbán A, Pignatelli M, Abellan JJ, Jiménez-Hernández N, Pérez-Cobas AE, Latorre A, Moya A (March 2011). "Metatranscriptomic approach to analyze the functional human gut microbiota". PLOS ONE. 6 (3) e17447. Bibcode:2011PLoSO...617447G. doi:10.1371/journal.pone.0017447. PMC 3050895. PMID 21408168.
Franzosa EA, Morgan XC, Segata N, Waldron L, Reyes J, Earl AM, Giannoukos G, Boylan MR, Ciulla D, Gevers D, Izard J, Garrett WS, Chan AT, Huttenhower C (June 2014). "Relating the metatranscriptome and metagenome of the human gut". Proceedings of the National Academy of Sciences of the United States of America. 111 (22): E2329–38. Bibcode:2014PNAS..111E2329F. doi:10.1073/pnas.1319284111. PMC 4050606. PMID 24843156.
Burisch J, Jess T, Martinato M, Lakatos PL (May 2013). "The burden of inflammatory bowel disease in Europe". Journal of Crohn's & Colitis. 7 (4): 322–37. doi:10.1016/j.crohns.2013.01.010. PMID 23395397.
Halfvarson J, Brislawn CJ, Lamendella R, Vázquez-Baeza Y, Walters WA, Bramer LM, D'Amato M, Bonfiglio F, McDonald D, Gonzalez A, McClure EE, Dunklebarger MF, Knight R, Jansson JK (February 2017). "Dynamics of the human gut microbiome in inflammatory bowel disease". Nature Microbiology. 2 (5): 17004. doi:10.1038/nmicrobiol.2017.4. PMC 5319707. PMID 28191884.
Lewis JD, Chen EZ, Baldassano RN, Otley AR, Griffiths AM, Lee D, et al. (October 2015). "Inflammation, Antibiotics, and Diet as Environmental Stressors of the Gut Microbiome in Pediatric Crohn's Disease". Cell Host & Microbe. 18 (4): 489–500. doi:10.1016/j.chom.2015.09.008. PMC 4633303. PMID 26468751.
Rehman A, Lepage P, Nolte A, Hellmig S, Schreiber S, Ott SJ (September 2010). "Transcriptional activity of the dominant gut mucosal microbiota in chronic inflammatory bowel disease patients". Journal of Medical Microbiology. 59 (Pt 9): 1114–22. doi:10.1099/jmm.0.021170-0. PMID 20522625.
Naughton J, Duggan G, Bourke B, Clyne M (2014). "Interaction of microbes with mucus and mucins: recent developments". Gut Microbes. 5 (1): 48–52. doi:10.4161/gmic.26680. PMC 4049936. PMID 24149677.
Westermann AJ, Gorski SA, Vogel J (September 2012). "Dual RNA-seq of pathogen and host". Nature Reviews Microbiology. 10 (9): 618–630. doi:10.1038/nrmicro2852. PMID 22890146. S2CID 205498287.
Saliba AE, C Santos S, Vogel J (February 2017). "New RNA-seq approaches for the study of bacterial pathogens". Current Opinion in Microbiology. 35: 78–87. doi:10.1016/j.mib.2017.01.001. hdl:10033/621506. PMID 28214646.

handle.net (Global: 102^nd place; English: 76^th place)

hdl.handle.net

Karasov WH, Martínez del Rio C, Caviedes-Vidal E (2011). "Ecological physiology of diet and digestive systems". Annual Review of Physiology. 73: 69–93. doi:10.1146/annurev-physiol-012110-142152. hdl:11336/14704. PMID 21314432.
LeBlanc JG, Milani C, de Giori GS, Sesma F, van Sinderen D, Ventura M (April 2013). "Bacteria as vitamin suppliers to their host: a gut microbiota perspective". Current Opinion in Biotechnology. 24 (2): 160–8. doi:10.1016/j.copbio.2012.08.005. hdl:11336/2561. PMID 22940212.
Saliba AE, C Santos S, Vogel J (February 2017). "New RNA-seq approaches for the study of bacterial pathogens". Current Opinion in Microbiology. 35: 78–87. doi:10.1016/j.mib.2017.01.001. hdl:10033/621506. PMID 28214646.

harvard.edu (Global: 18^th place; English: 17^th place)

ui.adsabs.harvard.edu

Xiong X, Frank DN, Robertson CE, Hung SS, Markle J, Canty AJ, McCoy KD, Macpherson AJ, Poussier P, Danska JS, Parkinson J (2012). "Generation and analysis of a mouse intestinal metatranscriptome through Illumina based RNA-sequencing". PLOS ONE. 7 (4) e36009. Bibcode:2012PLoSO...736009X. doi:10.1371/journal.pone.0036009. PMC 3338770. PMID 22558305.
Martinez X, Pozuelo M, Pascal V, Campos D, Gut I, Gut M, Azpiroz F, Guarner F, Manichanh C (May 2016). "MetaTrans: an open-source pipeline for metatranscriptomics". Scientific Reports. 6 26447. Bibcode:2016NatSR...626447M. doi:10.1038/srep26447. PMC 4876386. PMID 27211518.
Milanese, et al. (2019). "Microbial abundance, activity and population genomic profiling with mOTUs2". Nature Communications. 10 (1): 1014. Bibcode:2019NatCo..10.1014M. doi:10.1038/s41467-019-08844-4. PMC 6399450. PMID 30833550.
Hooper LV, Littman DR, Macpherson AJ (June 2012). "Interactions between the microbiota and the immune system". Science. 336 (6086): 1268–73. Bibcode:2012Sci...336.1268H. doi:10.1126/science.1223490. PMC 4420145. PMID 22674334.
Gosalbes MJ, Durbán A, Pignatelli M, Abellan JJ, Jiménez-Hernández N, Pérez-Cobas AE, Latorre A, Moya A (March 2011). "Metatranscriptomic approach to analyze the functional human gut microbiota". PLOS ONE. 6 (3) e17447. Bibcode:2011PLoSO...617447G. doi:10.1371/journal.pone.0017447. PMC 3050895. PMID 21408168.
Franzosa EA, Morgan XC, Segata N, Waldron L, Reyes J, Earl AM, Giannoukos G, Boylan MR, Ciulla D, Gevers D, Izard J, Garrett WS, Chan AT, Huttenhower C (June 2014). "Relating the metatranscriptome and metagenome of the human gut". Proceedings of the National Academy of Sciences of the United States of America. 111 (22): E2329–38. Bibcode:2014PNAS..111E2329F. doi:10.1073/pnas.1319284111. PMC 4050606. PMID 24843156.

nih.gov (Global: 4^th place; English: 4^th place)

pubmed.ncbi.nlm.nih.gov

Filiatrault MJ (October 2011). "Progress in prokaryotic transcriptomics". Current Opinion in Microbiology. 14 (5): 579–86. doi:10.1016/j.mib.2011.07.023. PMID 21839669.
Bashiardes S, Zilberman-Schapira G, Elinav E (2016). "Use of Metatranscriptomics in Microbiome Research". Bioinformatics and Biology Insights. 10: 19–25. doi:10.4137/BBI.S34610. PMC 4839964. PMID 27127406.
Apirion D, Miczak A (February 1993). "RNA processing in prokaryotic cells". BioEssays. 15 (2): 113–20. doi:10.1002/bies.950150207. PMID 7682412. S2CID 42365781.
Dumont MG, Pommerenke B, Casper P (October 2013). "Using stable isotope probing to obtain a targeted metatranscriptome of aerobic methanotrophs in lake sediment". Environmental Microbiology Reports. 5 (5): 757–64. doi:10.1111/1758-2229.12078. PMID 24115627.
Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, et al. (May 2011). "Full-length transcriptome assembly from RNA-Seq data without a reference genome". Nature Biotechnology. 29 (7): 644–52. doi:10.1038/nbt.1883. PMC 3571712. PMID 21572440.
Li B, Dewey CN (2011). "Rsem: accurate transcript quantification from RNA-seq data with or without a reference genome". BMC Bioinformatics. 12 (1): 323. doi:10.1186/1471-2105-12-323. PMC 3163565. PMID 21816040.
Haas BJ, Papanicolaou A, Yassour M, Grabherr M, Blood PD, Bowden J, Couger MB, Eccles D, Li B, Lieber M, MacManes MD, Ott M, Orvis J, Pochet N, Strozzi F, Weeks N, Westerman R, William T, Dewey CN, Henschel R, LeDuc RD, Friedman N, Regev A (August 2013). "De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis". Nature Protocols. 8 (8): 1494–512. doi:10.1038/nprot.2013.084. PMC 3875132. PMID 23845962.
De Bona F, Ossowski S, Schneeberger K, Rätsch G (August 2008). "Optimal spliced alignments of short sequence reads". Bioinformatics. 24 (16): i174–80. doi:10.1093/bioinformatics/btn300. PMID 18689821.
Leimena MM, Ramiro-Garcia J, Davids M, van den Bogert B, Smidt H, Smid EJ, Boekhorst J, Zoetendal EG, Schaap PJ, Kleerebezem M (2013). "A comprehensive metatranscriptome analysis pipeline and its validation using human small intestine microbiota datasets". BMC Genomics. 14 (1): 530. doi:10.1186/1471-2164-14-530. PMC 3750648. PMID 23915218.
Yost S, Duran-Pinedo AE, Teles R, Krishnan K, Frias-Lopez J (December 2015). "Functional signatures of oral dysbiosis during periodontitis progression revealed by microbial metatranscriptome analysis". Genome Medicine. 7 (1): 27. doi:10.1186/s13073-015-0153-3. PMC 4410737. PMID 25918553.
Yost S, Duran-Pinedo AE, Teles R, Krishnan K, Frias-Lopez J (2015). "Functional signatures of oral dysbiosis during periodontitis progression revealed by microbial metatranscriptome analysis". Genome Medicine. 7 (1): 27. doi:10.1186/s13073-015-0153-3. PMC 4410737. PMID 25918553.
Duran-Pinedo AE, Chen T, Teles R, Starr JR, Wang X, Krishnan K, Frias-Lopez J (August 2014). "Community-wide transcriptome of the oral microbiome in subjects with and without periodontitis". The ISME Journal. 8 (8): 1659–72. doi:10.1038/ismej.2014.23. PMC 4817619. PMID 24599074.
Jorth P, Turner KH, Gumus P, Nizam N, Buduneli N, Whiteley M (April 2014). "Metatranscriptomics of the human oral microbiome during health and disease". mBio. 5 (2): e01012–14. doi:10.1128/mBio.01012-14. PMC 3977359. PMID 24692635.
Xiong X, Frank DN, Robertson CE, Hung SS, Markle J, Canty AJ, McCoy KD, Macpherson AJ, Poussier P, Danska JS, Parkinson J (2012). "Generation and analysis of a mouse intestinal metatranscriptome through Illumina based RNA-sequencing". PLOS ONE. 7 (4) e36009. Bibcode:2012PLoSO...736009X. doi:10.1371/journal.pone.0036009. PMC 3338770. PMID 22558305.
Niu SY, Yang J, McDermaid A, Zhao J, Kang Y, Ma Q (November 2018). "Bioinformatics tools for quantitative and functional metagenome and metatranscriptome data analysis in microbes". Briefings in Bioinformatics. 19 (6): 1415–1429. doi:10.1093/bib/bbx051. PMID 28481971.
Franzosa EA, McIver LJ, Rahnavard G, Thompson LR, Schirmer M, Weingart G, Lipson KS, Knight R, Caporaso JG, Segata N, Huttenhower C (November 2018). "Species-level functional profiling of metagenomes and metatranscriptomes". Nature Methods. 15 (11): 962–968. doi:10.1038/s41592-018-0176-y. PMC 6235447. PMID 30377376.
Martinez X, Pozuelo M, Pascal V, Campos D, Gut I, Gut M, Azpiroz F, Guarner F, Manichanh C (May 2016). "MetaTrans: an open-source pipeline for metatranscriptomics". Scientific Reports. 6 26447. Bibcode:2016NatSR...626447M. doi:10.1038/srep26447. PMC 4876386. PMID 27211518.
Westreich ST, Korf I, Mills DA, Lemay DG (September 2016). "SAMSA: a comprehensive metatranscriptome analysis pipeline". BMC Bioinformatics. 17 (1): 399. doi:10.1186/s12859-016-1270-8. PMC 5041328. PMID 27687690.
Milanese, et al. (2019). "Microbial abundance, activity and population genomic profiling with mOTUs2". Nature Communications. 10 (1): 1014. Bibcode:2019NatCo..10.1014M. doi:10.1038/s41467-019-08844-4. PMC 6399450. PMID 30833550.
Karasov WH, Martínez del Rio C, Caviedes-Vidal E (2011). "Ecological physiology of diet and digestive systems". Annual Review of Physiology. 73: 69–93. doi:10.1146/annurev-physiol-012110-142152. hdl:11336/14704. PMID 21314432.
LeBlanc JG, Milani C, de Giori GS, Sesma F, van Sinderen D, Ventura M (April 2013). "Bacteria as vitamin suppliers to their host: a gut microbiota perspective". Current Opinion in Biotechnology. 24 (2): 160–8. doi:10.1016/j.copbio.2012.08.005. hdl:11336/2561. PMID 22940212.
Claus SP, Guillou H, Ellero-Simatos S (2016). "The gut microbiota: a major player in the toxicity of environmental pollutants?". npj Biofilms and Microbiomes. 2: 16003. doi:10.1038/npjbiofilms.2016.3. PMC 5515271. PMID 28721242.
Kamada N, Seo SU, Chen GY, Núñez G (May 2013). "Role of the gut microbiota in immunity and inflammatory disease". Nature Reviews. Immunology. 13 (5): 321–35. doi:10.1038/nri3430. PMID 23618829. S2CID 205491968.
Abreu MT (February 2010). "Toll-like receptor signalling in the intestinal epithelium: how bacterial recognition shapes intestinal function". Nature Reviews. Immunology. 10 (2): 131–44. doi:10.1038/nri2707. PMID 20098461. S2CID 21789611.
Sommer F, Bäckhed F (April 2013). "The gut microbiota--masters of host development and physiology". Nature Reviews. Microbiology. 11 (4): 227–38. doi:10.1038/nrmicro2974. PMID 23435359. S2CID 22798964.
Hooper LV, Littman DR, Macpherson AJ (June 2012). "Interactions between the microbiota and the immune system". Science. 336 (6086): 1268–73. Bibcode:2012Sci...336.1268H. doi:10.1126/science.1223490. PMC 4420145. PMID 22674334.
Gosalbes MJ, Durbán A, Pignatelli M, Abellan JJ, Jiménez-Hernández N, Pérez-Cobas AE, Latorre A, Moya A (March 2011). "Metatranscriptomic approach to analyze the functional human gut microbiota". PLOS ONE. 6 (3) e17447. Bibcode:2011PLoSO...617447G. doi:10.1371/journal.pone.0017447. PMC 3050895. PMID 21408168.
Franzosa EA, Morgan XC, Segata N, Waldron L, Reyes J, Earl AM, Giannoukos G, Boylan MR, Ciulla D, Gevers D, Izard J, Garrett WS, Chan AT, Huttenhower C (June 2014). "Relating the metatranscriptome and metagenome of the human gut". Proceedings of the National Academy of Sciences of the United States of America. 111 (22): E2329–38. Bibcode:2014PNAS..111E2329F. doi:10.1073/pnas.1319284111. PMC 4050606. PMID 24843156.
Burisch J, Jess T, Martinato M, Lakatos PL (May 2013). "The burden of inflammatory bowel disease in Europe". Journal of Crohn's & Colitis. 7 (4): 322–37. doi:10.1016/j.crohns.2013.01.010. PMID 23395397.
Halfvarson J, Brislawn CJ, Lamendella R, Vázquez-Baeza Y, Walters WA, Bramer LM, D'Amato M, Bonfiglio F, McDonald D, Gonzalez A, McClure EE, Dunklebarger MF, Knight R, Jansson JK (February 2017). "Dynamics of the human gut microbiome in inflammatory bowel disease". Nature Microbiology. 2 (5): 17004. doi:10.1038/nmicrobiol.2017.4. PMC 5319707. PMID 28191884.
Lewis JD, Chen EZ, Baldassano RN, Otley AR, Griffiths AM, Lee D, et al. (October 2015). "Inflammation, Antibiotics, and Diet as Environmental Stressors of the Gut Microbiome in Pediatric Crohn's Disease". Cell Host & Microbe. 18 (4): 489–500. doi:10.1016/j.chom.2015.09.008. PMC 4633303. PMID 26468751.
Rehman A, Lepage P, Nolte A, Hellmig S, Schreiber S, Ott SJ (September 2010). "Transcriptional activity of the dominant gut mucosal microbiota in chronic inflammatory bowel disease patients". Journal of Medical Microbiology. 59 (Pt 9): 1114–22. doi:10.1099/jmm.0.021170-0. PMID 20522625.
Naughton J, Duggan G, Bourke B, Clyne M (2014). "Interaction of microbes with mucus and mucins: recent developments". Gut Microbes. 5 (1): 48–52. doi:10.4161/gmic.26680. PMC 4049936. PMID 24149677.
Westermann AJ, Gorski SA, Vogel J (September 2012). "Dual RNA-seq of pathogen and host". Nature Reviews Microbiology. 10 (9): 618–630. doi:10.1038/nrmicro2852. PMID 22890146. S2CID 205498287.
Saliba AE, C Santos S, Vogel J (February 2017). "New RNA-seq approaches for the study of bacterial pathogens". Current Opinion in Microbiology. 35: 78–87. doi:10.1016/j.mib.2017.01.001. hdl:10033/621506. PMID 28214646.

ncbi.nlm.nih.gov

Bashiardes S, Zilberman-Schapira G, Elinav E (2016). "Use of Metatranscriptomics in Microbiome Research". Bioinformatics and Biology Insights. 10: 19–25. doi:10.4137/BBI.S34610. PMC 4839964. PMID 27127406.
Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, et al. (May 2011). "Full-length transcriptome assembly from RNA-Seq data without a reference genome". Nature Biotechnology. 29 (7): 644–52. doi:10.1038/nbt.1883. PMC 3571712. PMID 21572440.
Li B, Dewey CN (2011). "Rsem: accurate transcript quantification from RNA-seq data with or without a reference genome". BMC Bioinformatics. 12 (1): 323. doi:10.1186/1471-2105-12-323. PMC 3163565. PMID 21816040.
Haas BJ, Papanicolaou A, Yassour M, Grabherr M, Blood PD, Bowden J, Couger MB, Eccles D, Li B, Lieber M, MacManes MD, Ott M, Orvis J, Pochet N, Strozzi F, Weeks N, Westerman R, William T, Dewey CN, Henschel R, LeDuc RD, Friedman N, Regev A (August 2013). "De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis". Nature Protocols. 8 (8): 1494–512. doi:10.1038/nprot.2013.084. PMC 3875132. PMID 23845962.
Leimena MM, Ramiro-Garcia J, Davids M, van den Bogert B, Smidt H, Smid EJ, Boekhorst J, Zoetendal EG, Schaap PJ, Kleerebezem M (2013). "A comprehensive metatranscriptome analysis pipeline and its validation using human small intestine microbiota datasets". BMC Genomics. 14 (1): 530. doi:10.1186/1471-2164-14-530. PMC 3750648. PMID 23915218.
Yost S, Duran-Pinedo AE, Teles R, Krishnan K, Frias-Lopez J (December 2015). "Functional signatures of oral dysbiosis during periodontitis progression revealed by microbial metatranscriptome analysis". Genome Medicine. 7 (1): 27. doi:10.1186/s13073-015-0153-3. PMC 4410737. PMID 25918553.
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uni-wuerzburg.de (Global: 9,726^th place; English: low place)

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Metatranscriptomics (English Wikipedia)

doi.org (Global: 2nd place; English: 2nd place)

handle.net (Global: 102nd place; English: 76th place)