Methylated DNA immunoprecipitation (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Methylated DNA immunoprecipitation" in English language version.

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1biotechniques.com

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1kangchen.com.cn

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454.com

"DNA Sequencing, Screening, and Analysis: Instrumentation & Services - 454 Life Sciences™". Archived from the original on 2008-03-18. Retrieved 2008-03-18.

aacrjournals.org

cancerres.aacrjournals.org

Novak P, Jensen T, Oshiro MM, et al. (November 2006). "Epigenetic inactivation of the HOXA gene cluster in breast cancer". Cancer Res. 66 (22): 10664–70. doi:10.1158/0008-5472.CAN-06-2761. PMID 17090521.

biotechniques.com

Jacinto FV, Ballestar E, Esteller M (January 2008). "Methyl-DNA immunoprecipitation (MeDIP): hunting down the DNA methylome". BioTechniques. 44 (1): 35–43. doi:10.2144/000112708. PMID 18254377.

doi.org

Weber M, Davies JJ, Wittig D, et al. (August 2005). "Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells". Nat. Genet. 37 (8): 853–62. doi:10.1038/ng1598. PMID 16007088. S2CID 14505320.
Bird A (January 2002). "DNA methylation patterns and epigenetic memory". Genes Dev. 16 (1): 6–21. doi:10.1101/gad.947102. PMID 11782440.
Gardiner-Garden M, Frommer M (July 1987). "CpG islands in vertebrate genomes". J. Mol. Biol. 196 (2): 261–82. doi:10.1016/0022-2836(87)90689-9. PMID 3656447.
Clark SJ, Harrison J, Frommer M (May 1995). "CpNpG methylation in mammalian cells". Nat. Genet. 10 (1): 20–7. doi:10.1038/ng0595-20. PMID 7647784. S2CID 8857760.
Jaenisch R, Bird A (March 2003). "Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals". Nat. Genet. 33 (Suppl): 245–54. doi:10.1038/ng1089. PMID 12610534. S2CID 17270515.
Robertson KD, Wolffe AP (October 2000). "DNA methylation in health and disease". Nat. Rev. Genet. 1 (1): 11–9. doi:10.1038/35049533. PMID 11262868. S2CID 1915808.
Baylin SB, Herman JG (2000). "DNA hypermethylation in tumorigenesis: epigenetics joins genetics". Trends Genet. 16 (4): 268–274. doi:10.1016/S0168-9525(99)01971-X. PMID 10729832.
Jones PA, Laird PW (February 1999). "Cancer epigenetics comes of age". Nat. Genet. 21 (2): 163–7. doi:10.1038/5947. PMID 9988266. S2CID 10328397.
Jones PA, Baylin SB (June 2002). "The fundamental role of epigenetic events in cancer". Nat. Rev. Genet. 3 (6): 415–28. doi:10.1038/nrg816. PMID 12042769. S2CID 2122000.
Costello JF, Frühwald MC, Smiraglia DJ, et al. (February 2000). "Aberrant CpG-island methylation has non-random and tumour-type-specific patterns". Nat. Genet. 24 (2): 132–8. doi:10.1038/72785. PMID 10655057. S2CID 6273676.
Zardo G, Tiirikainen MI, Hong C, et al. (November 2002). "Integrated genomic and epigenomic analyses pinpoint biallelic gene inactivation in tumors". Nat. Genet. 32 (3): 453–8. doi:10.1038/ng1007. PMID 12355068. S2CID 23645606.
Yu L, Liu C, Vandeusen J, et al. (March 2005). "Global assessment of promoter methylation in a mouse model of cancer identifies ID4 as a putative tumor-suppressor gene in human leukemia". Nat. Genet. 37 (3): 265–74. doi:10.1038/ng1521. PMID 15723065. S2CID 515916.
Hatada I, Hayashizaki Y, Hirotsune S, Komatsubara H, Mukai T (November 1991). "A genomic scanning method for higher organisms using restriction sites as landmarks". Proc. Natl. Acad. Sci. U.S.A. 88 (21): 9523–7. Bibcode:1991PNAS...88.9523H. doi:10.1073/pnas.88.21.9523. PMC 52750. PMID 1946366.
Rakyan VK, Hildmann T, Novik KL, et al. (December 2004). "DNA Methylation Profiling of the Human Major Histocompatibility Complex: A Pilot Study for the Human Epigenome Project". PLOS Biol. 2 (12): e405. doi:10.1371/journal.pbio.0020405. PMC 529316. PMID 15550986.
Gitan RS, Shi H, Chen CM, Yan PS, Huang TH (January 2002). "Methylation-Specific Oligonucleotide Microarray: A New Potential for High-Throughput Methylation Analysis". Genome Res. 12 (1): 158–64. doi:10.1101/gr.202801. PMC 155260. PMID 11779841.
Meissner A, Gnirke A, Bell GW, Ramsahoye B, Lander ES, Jaenisch R (2005). "Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis". Nucleic Acids Res. 33 (18): 5868–77. doi:10.1093/nar/gki901. PMC 1258174. PMID 16224102.
Adorján P, Distler J, Lipscher E, et al. (March 2002). "Tumour class prediction and discovery by microarray-based DNA methylation analysis". Nucleic Acids Res. 30 (5): 21e–21. doi:10.1093/nar/30.5.e21. PMC 101257. PMID 11861926.
Dai Z, Weichenhan D, Wu YZ, et al. (October 2002). "An AscI Boundary Library for the Studies of Genetic and Epigenetic Alterations in CpG Islands". Genome Res. 12 (10): 1591–8. doi:10.1101/gr.197402. PMC 187524. PMID 12368252.
Pomraning KR, Smith KM, Freitag M (March 2009). "Genome-wide high throughput analysis of DNA methylation in eukaryotes". Methods. 47 (3): 142–50. doi:10.1016/j.ymeth.2008.09.022. PMID 18950712.
Down TA, Rakyan VK, Turner DJ, et al. (July 2008). "A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis". Nat. Biotechnol. 26 (7): 779–85. doi:10.1038/nbt1414. PMC 2644410. PMID 18612301.
Jacinto FV, Ballestar E, Esteller M (January 2008). "Methyl-DNA immunoprecipitation (MeDIP): hunting down the DNA methylome". BioTechniques. 44 (1): 35–43. doi:10.2144/000112708. PMID 18254377.
Meehan RR, Lewis JD, Bird AP (October 1992). "Characterization of MeCP2, a vertebrate DNA binding protein with affinity for methylated DNA". Nucleic Acids Res. 20 (19): 5085–92. doi:10.1093/nar/20.19.5085. PMC 334288. PMID 1408825.
Wilson IM, et al. (2005). "Epigenomics: Mapping the Methylome". Cell Cycle. 5 (2): 155–8. doi:10.4161/cc.5.2.2367. PMID 16397413.
Zhang X, Yazaki J, Sundaresan A, et al. (September 2006). "Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis". Cell. 126 (6): 1189–201. doi:10.1016/j.cell.2006.08.003. PMID 16949657.
Li H, Ruan J, Durbin R (November 2008). "Mapping short DNA sequencing reads and calling variants using mapping quality scores". Genome Res. 18 (11): 1851–8. doi:10.1101/gr.078212.108. PMC 2577856. PMID 18714091.
Esteller M (April 2007). "Epigenetic gene silencing in cancer: the DNA hypermethylome". Hum. Mol. Genet. 16 (Spec No 1): R50–9. doi:10.1093/hmg/ddm018. PMID 17613547.
Geeleher P, Hartnett L, Egan LJ, Golden A, Raja Ali RA, Seoighe C (June 2013). "Gene-Set Analysis is Severely Biased When Applied to Genome-wide Methylation Data". Bioinformatics. 29 (15): 1851–7. doi:10.1093/bioinformatics/btt311. PMID 23732277.
Keshet I, Schlesinger Y, Farkash S, et al. (February 2006). "Evidence for an instructive mechanism of de novo methylation in cancer cells". Nat. Genet. 38 (2): 149–53. doi:10.1038/ng1719. PMID 16444255. S2CID 14405389.
Novak P, Jensen T, Oshiro MM, et al. (November 2006). "Epigenetic inactivation of the HOXA gene cluster in breast cancer". Cancer Res. 66 (22): 10664–70. doi:10.1158/0008-5472.CAN-06-2761. PMID 17090521.

harvard.edu

ui.adsabs.harvard.edu

Hatada I, Hayashizaki Y, Hirotsune S, Komatsubara H, Mukai T (November 1991). "A genomic scanning method for higher organisms using restriction sites as landmarks". Proc. Natl. Acad. Sci. U.S.A. 88 (21): 9523–7. Bibcode:1991PNAS...88.9523H. doi:10.1073/pnas.88.21.9523. PMC 52750. PMID 1946366.

illumina.com

"Illumina | Sequencing and array-based solutions for genetic research".

kangchen.com.cn

DNA methylation microarray

nih.gov

pubmed.ncbi.nlm.nih.gov

Weber M, Davies JJ, Wittig D, et al. (August 2005). "Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells". Nat. Genet. 37 (8): 853–62. doi:10.1038/ng1598. PMID 16007088. S2CID 14505320.
Bird A (January 2002). "DNA methylation patterns and epigenetic memory". Genes Dev. 16 (1): 6–21. doi:10.1101/gad.947102. PMID 11782440.
Gardiner-Garden M, Frommer M (July 1987). "CpG islands in vertebrate genomes". J. Mol. Biol. 196 (2): 261–82. doi:10.1016/0022-2836(87)90689-9. PMID 3656447.
Clark SJ, Harrison J, Frommer M (May 1995). "CpNpG methylation in mammalian cells". Nat. Genet. 10 (1): 20–7. doi:10.1038/ng0595-20. PMID 7647784. S2CID 8857760.
Jaenisch R, Bird A (March 2003). "Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals". Nat. Genet. 33 (Suppl): 245–54. doi:10.1038/ng1089. PMID 12610534. S2CID 17270515.
Robertson KD, Wolffe AP (October 2000). "DNA methylation in health and disease". Nat. Rev. Genet. 1 (1): 11–9. doi:10.1038/35049533. PMID 11262868. S2CID 1915808.
Baylin SB, Herman JG (2000). "DNA hypermethylation in tumorigenesis: epigenetics joins genetics". Trends Genet. 16 (4): 268–274. doi:10.1016/S0168-9525(99)01971-X. PMID 10729832.
Jones PA, Laird PW (February 1999). "Cancer epigenetics comes of age". Nat. Genet. 21 (2): 163–7. doi:10.1038/5947. PMID 9988266. S2CID 10328397.
Jones PA, Baylin SB (June 2002). "The fundamental role of epigenetic events in cancer". Nat. Rev. Genet. 3 (6): 415–28. doi:10.1038/nrg816. PMID 12042769. S2CID 2122000.
Costello JF, Frühwald MC, Smiraglia DJ, et al. (February 2000). "Aberrant CpG-island methylation has non-random and tumour-type-specific patterns". Nat. Genet. 24 (2): 132–8. doi:10.1038/72785. PMID 10655057. S2CID 6273676.
Zardo G, Tiirikainen MI, Hong C, et al. (November 2002). "Integrated genomic and epigenomic analyses pinpoint biallelic gene inactivation in tumors". Nat. Genet. 32 (3): 453–8. doi:10.1038/ng1007. PMID 12355068. S2CID 23645606.
Yu L, Liu C, Vandeusen J, et al. (March 2005). "Global assessment of promoter methylation in a mouse model of cancer identifies ID4 as a putative tumor-suppressor gene in human leukemia". Nat. Genet. 37 (3): 265–74. doi:10.1038/ng1521. PMID 15723065. S2CID 515916.
Hatada I, Hayashizaki Y, Hirotsune S, Komatsubara H, Mukai T (November 1991). "A genomic scanning method for higher organisms using restriction sites as landmarks". Proc. Natl. Acad. Sci. U.S.A. 88 (21): 9523–7. Bibcode:1991PNAS...88.9523H. doi:10.1073/pnas.88.21.9523. PMC 52750. PMID 1946366.
Rakyan VK, Hildmann T, Novik KL, et al. (December 2004). "DNA Methylation Profiling of the Human Major Histocompatibility Complex: A Pilot Study for the Human Epigenome Project". PLOS Biol. 2 (12): e405. doi:10.1371/journal.pbio.0020405. PMC 529316. PMID 15550986.
Gitan RS, Shi H, Chen CM, Yan PS, Huang TH (January 2002). "Methylation-Specific Oligonucleotide Microarray: A New Potential for High-Throughput Methylation Analysis". Genome Res. 12 (1): 158–64. doi:10.1101/gr.202801. PMC 155260. PMID 11779841.
Meissner A, Gnirke A, Bell GW, Ramsahoye B, Lander ES, Jaenisch R (2005). "Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis". Nucleic Acids Res. 33 (18): 5868–77. doi:10.1093/nar/gki901. PMC 1258174. PMID 16224102.
Adorján P, Distler J, Lipscher E, et al. (March 2002). "Tumour class prediction and discovery by microarray-based DNA methylation analysis". Nucleic Acids Res. 30 (5): 21e–21. doi:10.1093/nar/30.5.e21. PMC 101257. PMID 11861926.
Dai Z, Weichenhan D, Wu YZ, et al. (October 2002). "An AscI Boundary Library for the Studies of Genetic and Epigenetic Alterations in CpG Islands". Genome Res. 12 (10): 1591–8. doi:10.1101/gr.197402. PMC 187524. PMID 12368252.
Pomraning KR, Smith KM, Freitag M (March 2009). "Genome-wide high throughput analysis of DNA methylation in eukaryotes". Methods. 47 (3): 142–50. doi:10.1016/j.ymeth.2008.09.022. PMID 18950712.
Down TA, Rakyan VK, Turner DJ, et al. (July 2008). "A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis". Nat. Biotechnol. 26 (7): 779–85. doi:10.1038/nbt1414. PMC 2644410. PMID 18612301.
Jacinto FV, Ballestar E, Esteller M (January 2008). "Methyl-DNA immunoprecipitation (MeDIP): hunting down the DNA methylome". BioTechniques. 44 (1): 35–43. doi:10.2144/000112708. PMID 18254377.
Meehan RR, Lewis JD, Bird AP (October 1992). "Characterization of MeCP2, a vertebrate DNA binding protein with affinity for methylated DNA". Nucleic Acids Res. 20 (19): 5085–92. doi:10.1093/nar/20.19.5085. PMC 334288. PMID 1408825.
Wilson IM, et al. (2005). "Epigenomics: Mapping the Methylome". Cell Cycle. 5 (2): 155–8. doi:10.4161/cc.5.2.2367. PMID 16397413.
Zhang X, Yazaki J, Sundaresan A, et al. (September 2006). "Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis". Cell. 126 (6): 1189–201. doi:10.1016/j.cell.2006.08.003. PMID 16949657.
Li H, Ruan J, Durbin R (November 2008). "Mapping short DNA sequencing reads and calling variants using mapping quality scores". Genome Res. 18 (11): 1851–8. doi:10.1101/gr.078212.108. PMC 2577856. PMID 18714091.
Esteller M (April 2007). "Epigenetic gene silencing in cancer: the DNA hypermethylome". Hum. Mol. Genet. 16 (Spec No 1): R50–9. doi:10.1093/hmg/ddm018. PMID 17613547.
Geeleher P, Hartnett L, Egan LJ, Golden A, Raja Ali RA, Seoighe C (June 2013). "Gene-Set Analysis is Severely Biased When Applied to Genome-wide Methylation Data". Bioinformatics. 29 (15): 1851–7. doi:10.1093/bioinformatics/btt311. PMID 23732277.
Keshet I, Schlesinger Y, Farkash S, et al. (February 2006). "Evidence for an instructive mechanism of de novo methylation in cancer cells". Nat. Genet. 38 (2): 149–53. doi:10.1038/ng1719. PMID 16444255. S2CID 14405389.
Novak P, Jensen T, Oshiro MM, et al. (November 2006). "Epigenetic inactivation of the HOXA gene cluster in breast cancer". Cancer Res. 66 (22): 10664–70. doi:10.1158/0008-5472.CAN-06-2761. PMID 17090521.

ncbi.nlm.nih.gov

Hatada I, Hayashizaki Y, Hirotsune S, Komatsubara H, Mukai T (November 1991). "A genomic scanning method for higher organisms using restriction sites as landmarks". Proc. Natl. Acad. Sci. U.S.A. 88 (21): 9523–7. Bibcode:1991PNAS...88.9523H. doi:10.1073/pnas.88.21.9523. PMC 52750. PMID 1946366.
Rakyan VK, Hildmann T, Novik KL, et al. (December 2004). "DNA Methylation Profiling of the Human Major Histocompatibility Complex: A Pilot Study for the Human Epigenome Project". PLOS Biol. 2 (12): e405. doi:10.1371/journal.pbio.0020405. PMC 529316. PMID 15550986.
Gitan RS, Shi H, Chen CM, Yan PS, Huang TH (January 2002). "Methylation-Specific Oligonucleotide Microarray: A New Potential for High-Throughput Methylation Analysis". Genome Res. 12 (1): 158–64. doi:10.1101/gr.202801. PMC 155260. PMID 11779841.
Meissner A, Gnirke A, Bell GW, Ramsahoye B, Lander ES, Jaenisch R (2005). "Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis". Nucleic Acids Res. 33 (18): 5868–77. doi:10.1093/nar/gki901. PMC 1258174. PMID 16224102.
Adorján P, Distler J, Lipscher E, et al. (March 2002). "Tumour class prediction and discovery by microarray-based DNA methylation analysis". Nucleic Acids Res. 30 (5): 21e–21. doi:10.1093/nar/30.5.e21. PMC 101257. PMID 11861926.
Dai Z, Weichenhan D, Wu YZ, et al. (October 2002). "An AscI Boundary Library for the Studies of Genetic and Epigenetic Alterations in CpG Islands". Genome Res. 12 (10): 1591–8. doi:10.1101/gr.197402. PMC 187524. PMID 12368252.
Down TA, Rakyan VK, Turner DJ, et al. (July 2008). "A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis". Nat. Biotechnol. 26 (7): 779–85. doi:10.1038/nbt1414. PMC 2644410. PMID 18612301.
Meehan RR, Lewis JD, Bird AP (October 1992). "Characterization of MeCP2, a vertebrate DNA binding protein with affinity for methylated DNA". Nucleic Acids Res. 20 (19): 5085–92. doi:10.1093/nar/20.19.5085. PMC 334288. PMID 1408825.
Li H, Ruan J, Durbin R (November 2008). "Mapping short DNA sequencing reads and calling variants using mapping quality scores". Genome Res. 18 (11): 1851–8. doi:10.1101/gr.078212.108. PMC 2577856. PMID 18714091.

semanticscholar.org

api.semanticscholar.org

Weber M, Davies JJ, Wittig D, et al. (August 2005). "Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells". Nat. Genet. 37 (8): 853–62. doi:10.1038/ng1598. PMID 16007088. S2CID 14505320.
Clark SJ, Harrison J, Frommer M (May 1995). "CpNpG methylation in mammalian cells". Nat. Genet. 10 (1): 20–7. doi:10.1038/ng0595-20. PMID 7647784. S2CID 8857760.
Jaenisch R, Bird A (March 2003). "Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals". Nat. Genet. 33 (Suppl): 245–54. doi:10.1038/ng1089. PMID 12610534. S2CID 17270515.
Robertson KD, Wolffe AP (October 2000). "DNA methylation in health and disease". Nat. Rev. Genet. 1 (1): 11–9. doi:10.1038/35049533. PMID 11262868. S2CID 1915808.
Jones PA, Laird PW (February 1999). "Cancer epigenetics comes of age". Nat. Genet. 21 (2): 163–7. doi:10.1038/5947. PMID 9988266. S2CID 10328397.
Jones PA, Baylin SB (June 2002). "The fundamental role of epigenetic events in cancer". Nat. Rev. Genet. 3 (6): 415–28. doi:10.1038/nrg816. PMID 12042769. S2CID 2122000.
Costello JF, Frühwald MC, Smiraglia DJ, et al. (February 2000). "Aberrant CpG-island methylation has non-random and tumour-type-specific patterns". Nat. Genet. 24 (2): 132–8. doi:10.1038/72785. PMID 10655057. S2CID 6273676.
Zardo G, Tiirikainen MI, Hong C, et al. (November 2002). "Integrated genomic and epigenomic analyses pinpoint biallelic gene inactivation in tumors". Nat. Genet. 32 (3): 453–8. doi:10.1038/ng1007. PMID 12355068. S2CID 23645606.
Yu L, Liu C, Vandeusen J, et al. (March 2005). "Global assessment of promoter methylation in a mouse model of cancer identifies ID4 as a putative tumor-suppressor gene in human leukemia". Nat. Genet. 37 (3): 265–74. doi:10.1038/ng1521. PMID 15723065. S2CID 515916.
Keshet I, Schlesinger Y, Farkash S, et al. (February 2006). "Evidence for an instructive mechanism of de novo methylation in cancer cells". Nat. Genet. 38 (2): 149–53. doi:10.1038/ng1719. PMID 16444255. S2CID 14405389.

web.archive.org

"DNA Sequencing, Screening, and Analysis: Instrumentation & Services - 454 Life Sciences™". Archived from the original on 2008-03-18. Retrieved 2008-03-18.