Neighbor joining (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Neighbor joining" in English language version.

refsWebsite

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8doi.org

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8nih.gov

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2worldcat.org

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2atgc-montpellier.fr

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2au.dk

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1books.google.com

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1oup.com

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1arxiv.org

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1semanticscholar.org

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1wheelerlab.org

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1web.archive.org

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1lanl.gov

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1microbesonline.org

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arxiv.org

Mihaescu R, Levy D, Pachter L (2009). "Why neighbor-joining works". Algorithmica. 54 (1): 1–24. arXiv:cs/0602041. doi:10.1007/s00453-007-9116-4. S2CID 2462145.{{cite journal}}: CS1 maint: multiple names: authors list (link)

atgc-montpellier.fr

"ATGC: BioNJ". www.atgc-montpellier.fr.
"ATGC: FastME". www.atgc-montpellier.fr.

au.dk

birc.au.dk

"RapidNJ". birc.au.dk.

users-birc.au.dk

Simonsen, Martin; Mailund, Thomas; Pedersen, Christian N. S. (2008). "Rapid Neighbour-Joining" (PDF). Algorithms in Bioinformatics. Lecture Notes in Computer Science. Vol. 5251. pp. 113–122. doi:10.1007/978-3-540-87361-7_10. ISBN 978-3-540-87360-0.

books.google.com

Xavier Didelot (2010). "Sequence-Based Analysis of Bacterial Population Structures". In D. Ashley Robinson; Daniel Falush; Edward J. Feil (eds.). Bacterial Population Genetics in Infectious Disease. John Wiley and Sons. pp. 46–47. ISBN 978-0-470-42474-2.

cnrs.fr

hal-lirmm.ccsd.cnrs.fr

Gascuel O, Steel M (2006). "Neighbor-joining revealed". Mol Biol Evol. 23 (11): 1997–2000. doi:10.1093/molbev/msl072. PMID 16877499.

doi.org

Saitou, N.; Nei, M. (1 July 1987). "The neighbor-joining method: a new method for reconstructing phylogenetic trees". Molecular Biology and Evolution. 4 (4): 406–425. doi:10.1093/oxfordjournals.molbev.a040454. PMID 3447015.
Studier, J. A.; Keppler, K. J. (November 1988). "A note on the neighbor-joining algorithm of Saitou and Nei". Molecular Biology and Evolution. 5 (6): 729–31. doi:10.1093/oxfordjournals.molbev.a040527. ISSN 1537-1719. PMID 3221794.
Mailund, Thomas; Brodal, GerthS; Fagerberg, Rolf; Pedersen, ChristianNS; Phillips, Derek (2006). "Recrafting the neighbor-joining method". BMC Bioinformatics. 7 (1): 29. doi:10.1186/1471-2105-7-29. PMC 3271233. PMID 16423304.
Gascuel O, Steel M (2006). "Neighbor-joining revealed". Mol Biol Evol. 23 (11): 1997–2000. doi:10.1093/molbev/msl072. PMID 16877499.
Kuhner, M. K.; Felsenstein, J. (1994-05-01). "A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates". Molecular Biology and Evolution. 11 (3): 459–468. doi:10.1093/oxfordjournals.molbev.a040126. ISSN 0737-4038. PMID 8015439.
Mihaescu R, Levy D, Pachter L (2009). "Why neighbor-joining works". Algorithmica. 54 (1): 1–24. arXiv:cs/0602041. doi:10.1007/s00453-007-9116-4. S2CID 2462145.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Criscuolo, Alexis; Gascuel, Olivier (December 2008). "Fast NJ-like algorithms to deal with incomplete distance matrices". BMC Bioinformatics. 9 (1): 166. doi:10.1186/1471-2105-9-166. PMC 2335114. PMID 18366787.
Simonsen, Martin; Mailund, Thomas; Pedersen, Christian N. S. (2008). "Rapid Neighbour-Joining" (PDF). Algorithms in Bioinformatics. Lecture Notes in Computer Science. Vol. 5251. pp. 113–122. doi:10.1007/978-3-540-87361-7_10. ISBN 978-3-540-87360-0.

lanl.gov

t6.lanl.gov

"WEIGHBOR Homepage". 5 March 2015. Archived from the original on 2015-03-05.

microbesonline.org

"FastTree 2.1: Approximately-Maximum-Likelihood Trees for Large Alignments". www.microbesonline.org.

nih.gov

pubmed.ncbi.nlm.nih.gov

Saitou, N.; Nei, M. (1 July 1987). "The neighbor-joining method: a new method for reconstructing phylogenetic trees". Molecular Biology and Evolution. 4 (4): 406–425. doi:10.1093/oxfordjournals.molbev.a040454. PMID 3447015.
Studier, J. A.; Keppler, K. J. (November 1988). "A note on the neighbor-joining algorithm of Saitou and Nei". Molecular Biology and Evolution. 5 (6): 729–31. doi:10.1093/oxfordjournals.molbev.a040527. ISSN 1537-1719. PMID 3221794.
Mailund, Thomas; Brodal, GerthS; Fagerberg, Rolf; Pedersen, ChristianNS; Phillips, Derek (2006). "Recrafting the neighbor-joining method". BMC Bioinformatics. 7 (1): 29. doi:10.1186/1471-2105-7-29. PMC 3271233. PMID 16423304.
Gascuel O, Steel M (2006). "Neighbor-joining revealed". Mol Biol Evol. 23 (11): 1997–2000. doi:10.1093/molbev/msl072. PMID 16877499.
Kuhner, M. K.; Felsenstein, J. (1994-05-01). "A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates". Molecular Biology and Evolution. 11 (3): 459–468. doi:10.1093/oxfordjournals.molbev.a040126. ISSN 0737-4038. PMID 8015439.
Criscuolo, Alexis; Gascuel, Olivier (December 2008). "Fast NJ-like algorithms to deal with incomplete distance matrices". BMC Bioinformatics. 9 (1): 166. doi:10.1186/1471-2105-9-166. PMC 2335114. PMID 18366787.

ncbi.nlm.nih.gov

Mailund, Thomas; Brodal, GerthS; Fagerberg, Rolf; Pedersen, ChristianNS; Phillips, Derek (2006). "Recrafting the neighbor-joining method". BMC Bioinformatics. 7 (1): 29. doi:10.1186/1471-2105-7-29. PMC 3271233. PMID 16423304.
Criscuolo, Alexis; Gascuel, Olivier (December 2008). "Fast NJ-like algorithms to deal with incomplete distance matrices". BMC Bioinformatics. 9 (1): 166. doi:10.1186/1471-2105-9-166. PMC 2335114. PMID 18366787.

oup.com

academic.oup.com

Studier, J. A.; Keppler, K. J. (November 1988). "A note on the neighbor-joining algorithm of Saitou and Nei". Molecular Biology and Evolution. 5 (6): 729–31. doi:10.1093/oxfordjournals.molbev.a040527. ISSN 1537-1719. PMID 3221794.

semanticscholar.org

api.semanticscholar.org

Mihaescu R, Levy D, Pachter L (2009). "Why neighbor-joining works". Algorithmica. 54 (1): 1–24. arXiv:cs/0602041. doi:10.1007/s00453-007-9116-4. S2CID 2462145.{{cite journal}}: CS1 maint: multiple names: authors list (link)

web.archive.org

"WEIGHBOR Homepage". 5 March 2015. Archived from the original on 2015-03-05.

wheelerlab.org

"NINJA: a tool for large-scale neighbor-joining phylogeny inference - Home". wheelerlab.org.

worldcat.org

search.worldcat.org

Studier, J. A.; Keppler, K. J. (November 1988). "A note on the neighbor-joining algorithm of Saitou and Nei". Molecular Biology and Evolution. 5 (6): 729–31. doi:10.1093/oxfordjournals.molbev.a040527. ISSN 1537-1719. PMID 3221794.
Kuhner, M. K.; Felsenstein, J. (1994-05-01). "A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates". Molecular Biology and Evolution. 11 (3): 459–468. doi:10.1093/oxfordjournals.molbev.a040126. ISSN 0737-4038. PMID 8015439.