Neuronal tracing (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Neuronal tracing" in English language version.

refsWebsite

Global rank English rank

48nih.gov

4^th place

32doi.org

2^nd place

16worldcat.org

5^th place

8semanticscholar.org

11^th place

8^th place

4harvard.edu

18^th place

17^th place

2psu.edu

207^th place

136^th place

2biorxiv.org

5,061^st place

5,698^th place

1springer.com

274^th place

309^th place

1mit.edu

415^th place

327^th place

1simonsfoundation.org

low place

1cshl.edu

low place

1archives-ouvertes.fr

1,031^st place

879^th place

1web.archive.org

1^st place

1mssm.edu

low place

1nature.com

234^th place

397^th place

archives-ouvertes.fr

hal.archives-ouvertes.fr

Helmstaedter M, Briggman KL, Denk W (2011). "High-accuracy neurite reconstruction for high-throughput neuroanatomy". Nat Neurosci. 14 (8): 1081–1088. doi:10.1038/nn.2868. PMID 21743472. S2CID 17795934.

biorxiv.org

Macrina, Thomas; Lee, Kisuk; Lu, Ran; Turner, Nicholas L.; Wu, Jingpeng; Popovych, Sergiy; Silversmith, William; Kemnitz, Nico; Bae, J. Alexander (5 August 2021), Petascale neural circuit reconstruction: automated methods, doi:10.1101/2021.08.04.455162, retrieved 30 May 2025
Verasztó, Csaba; Jasek, Sanja; Gühmann, Martin; Shahidi, Réza; Ueda, Nobuo; Beard, James David; Mendes, Sara; Heinz, Konrad; Bezares-Calderón, Luis Alberto (22 August 2022), Whole-animal connectome and cell-type complement of the three-segmented Platynereis dumerilii larva, doi:10.1101/2020.08.21.260984, retrieved 30 May 2025

cshl.edu

Michalowski, Jennifer (2020-09-28). "AI learns to trace neuronal pathways". Cold Spring Harbor Laboratory. Retrieved 2025-05-30.

doi.org

Saleeba, Christine; Dempsey, Bowen; Le, Sheng; Goodchild, Ann; McMullan, Simon (27 Aug 2019). "A Student's Guide to Neural Circuit Tracing". Frontiers in Neuroscience. 13: 897. doi:10.3389/fnins.2019.00897. ISSN 1662-4548. PMC 6718611. PMID 31507369.
Peng, Hanchuan; Roysam, Badri; Ascoli, Giorgio (2013). "Automated image computing reshapes computational neuroscience". BMC Bioinformatics. 14: 293. doi:10.1186/1471-2105-14-293. PMC 3853071. PMID 24090217.
Meijering, Erik (2010). "Neuron Tracing in Perspective". Cytometry Part A. 77 (7): 693–704. CiteSeerX 10.1.1.623.3000. doi:10.1002/cyto.a.20895. PMID 20583273. S2CID 14047936.
Peng, H., Long, F., Zhao, T., and Myers, E.W. (2011). "Proof-editing is the bottleneck of 3D neuron reconstruction: the problem and solutions". Neuroinformatics. 9 (2–3): 103–105. doi:10.1007/s12021-010-9090-x. PMID 21170608. S2CID 4995280.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Peng, H., Tang, J., Xiao, H., Bria, A.; et al. (2014). "Virtual finger boosts three-dimensional imaging and microsurgery as well as terabyte volume image visualization and analysis". Nature Communications. 5: 4342. Bibcode:2014NatCo...5.4342P. doi:10.1038/ncomms5342. PMC 4104457. PMID 25014658.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Svara, Fabian; Förster, Dominique; Kubo, Fumi; Januszewski, Michał; dal Maschio, Marco; Schubert, Philipp J.; Kornfeld, Jörgen; Wanner, Adrian A.; Laurell, Eva; Denk, Winfried; Baier, Herwig (24 October 2022). "Automated synapse-level reconstruction of neural circuits in the larval zebrafish brain". Nature Methods. 19 (11): 1357–1366. doi:10.1038/s41592-022-01621-0. ISSN 1548-7091. PMC 9636024. PMID 36280717.
Dorkenwald, Sven; Matsliah, Arie; Sterling, Amy R.; Schlegel, Philipp; Yu, Szi-chieh; McKellar, Claire E.; Lin, Albert; Costa, Marta; Eichler, Katharina; Yin, Yijie; Silversmith, Will; Schneider-Mizell, Casey; Jordan, Chris S.; Brittain, Derrick; Halageri, Akhilesh (3 October 2024). "Neuronal wiring diagram of an adult brain". Nature. 634 (8032): 124–138. doi:10.1038/s41586-024-07558-y. ISSN 0028-0836. PMC 11446842. PMID 39358518.
Glaser, E. M.; Vanderloos, H. (1965-01-01). "A Semi-Automatic Computer-Microscope for the Analysis of Neuronal Morphology". IEEE Transactions on Biomedical Engineering. 12: 22–31. doi:10.1109/TBME.1965.4502337. ISSN 0018-9294. PMID 14291539.
Zheng, Zhihao; Lauritzen, J. Scott; Perlman, Eric; Robinson, Camenzind G.; Nichols, Matthew; Milkie, Daniel; Torrens, Omar; Price, John; Fisher, Corey B.; Sharifi, Nadiya; Calle-Schuler, Steven A.; Kmecova, Lucia; Ali, Iqbal J.; Karsh, Bill; Trautman, Eric T. (26 July 2018). "A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster". Cell. 174 (3): 730–743.e22. doi:10.1016/j.cell.2018.06.019. ISSN 0092-8674. PMC 6063995. PMID 30033368.
Randel, Nadine; Shahidi, Réza; Verasztó, Csaba; Bezares-Calderón, Luis A; Schmidt, Steffen; Jékely, Gáspár (10 June 2015). Marder, Eve (ed.). "Inter-individual stereotypy of the Platynereis larval visual connectome". eLife. 4: e08069. doi:10.7554/eLife.08069. ISSN 2050-084X. PMC 4477197. PMID 26061864.
Macrina, Thomas; Lee, Kisuk; Lu, Ran; Turner, Nicholas L.; Wu, Jingpeng; Popovych, Sergiy; Silversmith, William; Kemnitz, Nico; Bae, J. Alexander (5 August 2021), Petascale neural circuit reconstruction: automated methods, doi:10.1101/2021.08.04.455162, retrieved 30 May 2025
Shapson-Coe, Alexander; Januszewski, Michał; Berger, Daniel R.; Pope, Art; Wu, Yuelong; Blakely, Tim; Schalek, Richard L.; Li, Peter H.; Wang, Shuohong; Maitin-Shepard, Jeremy; Karlupia, Neha; Dorkenwald, Sven; Sjostedt, Evelina; Leavitt, Laramie; Lee, Dongil (10 May 2024). "A petavoxel fragment of human cerebral cortex reconstructed at nanoscale resolution". Science. 384 (6696): eadk4858. Bibcode:2024Sci...384k4858S. doi:10.1126/science.adk4858. ISSN 0036-8075. PMC 11718559. PMID 38723085.
Al-Kofahi, K.A.; et al. (2002). "Rapid automated three-dimensional tracing of neurons from confocal image stacks". IEEE Trans. Inf. Technol. Biomed. 6 (2): 171–187. CiteSeerX 10.1.1.57.9339. doi:10.1109/titb.2002.1006304. PMID 12075671. S2CID 12413677.
Peng, H.; et al. (2011). "Automatic 3D neuron tracing using all-path pruning". Bioinformatics. 27 (13): i239 – i247. doi:10.1093/bioinformatics/btr237. PMC 3117353. PMID 21685076.
Rodriguez, A.; et al. (2009). "Three-dimensional neuron tracing by voxel scooping". J. Neurosci. Methods. 184 (1): 169–175. doi:10.1016/j.jneumeth.2009.07.021. PMC 2753723. PMID 19632273.
Xiao, H; et al. (2013). "APP2: automatic tracing of 3D neuron morphology based on hierarchical pruning of gray-weighted image distance-trees". Bioinformatics. 29 (11): 1448–1454. doi:10.1093/bioinformatics/btt170. PMC 3661058. PMID 23603332.
Schlegel, Philipp; Yin, Yijie; Bates, Alexander S.; Dorkenwald, Sven; Eichler, Katharina; Brooks, Paul; Han, Daniel S.; Gkantia, Marina; dos Santos, Marcia; Munnelly, Eva J.; Badalamente, Griffin; Serratosa Capdevila, Laia; Sane, Varun A.; Fragniere, Alexandra M. C.; Kiassat, Ladann (3 October 2024). "Whole-brain annotation and multi-connectome cell typing of Drosophila". Nature. 634 (8032): 139–152. doi:10.1038/s41586-024-07686-5. ISSN 0028-0836. PMC 11446831. PMID 39358521.
Liu, Y (2011). "The DIADEM and beyond". Neuroinformatics. 9 (2–3): 99–102. doi:10.1007/s12021-011-9102-5. PMID 21431331.
Helmstaedter M, Briggman KL, Denk W (2011). "High-accuracy neurite reconstruction for high-throughput neuroanatomy". Nat Neurosci. 14 (8): 1081–1088. doi:10.1038/nn.2868. PMID 21743472. S2CID 17795934.
Kim; et al. (2014). "Space–time wiring specificity supports direction selectivity in the retina". Nature. 509 (7500): 331–336. Bibcode:2014Natur.509..331.. doi:10.1038/nature13240. PMC 4074887. PMID 24805243.
Halavi, Maryam; Hamilton, Kelly A.; Parekh, Ruchi; Ascoli, Giorgio A. (2012-01-01). "Digital reconstructions of neuronal morphology: three decades of research trends". Frontiers in Neuroscience. 6: 49. doi:10.3389/fnins.2012.00049. ISSN 1662-453X. PMC 3332236. PMID 22536169.
Aguiar, Paulo; Sousa, Mafalda; Szucs, Peter (2013-06-14). "Versatile Morphometric Analysis and Visualization of the Three-Dimensional Structure of Neurons". Neuroinformatics. 11 (4): 393–403. doi:10.1007/s12021-013-9188-z. ISSN 1539-2791. PMID 23765606. S2CID 16591493.
Peng, Hanchuan; Hawrylycz, Michael; Roskams, Jane (2015-07-15). "BigNeuron: Large-Scale 3D Neuron Reconstruction from Optical Microscopy Images". Neuron. 87 (2): 252–256. doi:10.1016/j.neuron.2015.06.036. PMC 4725298. PMID 26182412.
Peng, Hanchuan; Zhou, Zhi; Meijering, Erik (2016). "Automatic Tracing of Ultra-Volume of Neuronal Images". bioRxiv 10.1101/087726.
Boergens, Kevin M.; Berning, Manuel; Bocklisch, Tom; Bräunlein, Dominic; Drawitsch, Florian; Frohnhofen, Johannes; Herold, Tom; Otto, Philipp; Rzepka, Norman; Werkmeister, Thomas; Werner, Daniel; Wiese, Georg; Wissler, Heiko; Helmstaedter, Moritz (July 2017). "webKnossos: efficient online 3D data annotation for connectomics". Nature Methods. 14 (7): 691–694. doi:10.1038/nmeth.4331. ISSN 1548-7105. PMID 28604722. S2CID 30609228.
Bianchi, Serena; Stimpson, Cheryl D.; Bauernfeind, Amy L.; Schapiro, Steven J.; Baze, Wallace B.; McArthur, Mark J.; Bronson, Ellen; Hopkins, William D.; Semendeferi, Katerina (2013-10-01). "Dendritic Morphology of Pyramidal Neurons in the Chimpanzee Neocortex: Regional Specializations and Comparison to Humans". Cerebral Cortex. 23 (10): 2429–2436. doi:10.1093/cercor/bhs239. ISSN 1047-3211. PMC 3767963. PMID 22875862.
Silberberg, Gilad; Markram, Henry (2007-03-01). "Disynaptic Inhibition between Neocortical Pyramidal Cells Mediated by Martinotti Cells". Neuron. 53 (5): 735–746. doi:10.1016/j.neuron.2007.02.012. ISSN 0896-6273. PMID 17329212. S2CID 15624023.
Bianchi, Serena; Bauernfeind, Amy L.; Gupta, Kanika; Stimpson, Cheryl D.; Spocter, Muhammad A.; Bonar, Christopher J.; Manger, Paul R.; Hof, Patrick R.; Jacobs, Bob (2011-04-01). "Neocortical neuron morphology in Afrotheria: comparing the rock hyrax with the African elephant". Annals of the New York Academy of Sciences. 1225 (1): 37–46. Bibcode:2011NYASA1225...37B. doi:10.1111/j.1749-6632.2011.05991.x. ISSN 1749-6632. PMID 21534991. S2CID 18281955.
Ascoli GA, Donohue DE, Halavi M (2007). "NeuroMorpho.Org - A central resource for neuronal morphologies". J Neurosci. 27 (35): 9247–9251. doi:10.1523/jneurosci.2055-07.2007. PMC 6673130. PMID 17728438.
Svara, Fabian; Förster, Dominique; Kubo, Fumi; Januszewski, Michał; dal Maschio, Marco; Schubert, Philipp J.; Kornfeld, Jörgen; Wanner, Adrian A.; Laurell, Eva; Denk, Winfried; Baier, Herwig (24 October 2022). "Automated synapse-level reconstruction of neural circuits in the larval zebrafish brain". Nature Methods. 19 (11): 1357–1366. doi:10.1038/s41592-022-01621-0. ISSN 1548-7091. PMC 9636024. PMID 36280717.
Verasztó, Csaba; Jasek, Sanja; Gühmann, Martin; Shahidi, Réza; Ueda, Nobuo; Beard, James David; Mendes, Sara; Heinz, Konrad; Bezares-Calderón, Luis Alberto (22 August 2022), Whole-animal connectome and cell-type complement of the three-segmented Platynereis dumerilii larva, doi:10.1101/2020.08.21.260984, retrieved 30 May 2025
Dorkenwald, Sven; Matsliah, Arie; Sterling, Amy R.; Schlegel, Philipp; Yu, Szi-chieh; McKellar, Claire E.; Lin, Albert; Costa, Marta; Eichler, Katharina; Yin, Yijie; Silversmith, Will; Schneider-Mizell, Casey; Jordan, Chris S.; Brittain, Derrick; Halageri, Akhilesh (3 October 2024). "Neuronal wiring diagram of an adult brain". Nature. 634 (8032): 124–138. doi:10.1038/s41586-024-07558-y. ISSN 0028-0836. PMC 11446842. PMID 39358518.

harvard.edu

ui.adsabs.harvard.edu

Peng, H., Tang, J., Xiao, H., Bria, A.; et al. (2014). "Virtual finger boosts three-dimensional imaging and microsurgery as well as terabyte volume image visualization and analysis". Nature Communications. 5: 4342. Bibcode:2014NatCo...5.4342P. doi:10.1038/ncomms5342. PMC 4104457. PMID 25014658.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Shapson-Coe, Alexander; Januszewski, Michał; Berger, Daniel R.; Pope, Art; Wu, Yuelong; Blakely, Tim; Schalek, Richard L.; Li, Peter H.; Wang, Shuohong; Maitin-Shepard, Jeremy; Karlupia, Neha; Dorkenwald, Sven; Sjostedt, Evelina; Leavitt, Laramie; Lee, Dongil (10 May 2024). "A petavoxel fragment of human cerebral cortex reconstructed at nanoscale resolution". Science. 384 (6696): eadk4858. Bibcode:2024Sci...384k4858S. doi:10.1126/science.adk4858. ISSN 0036-8075. PMC 11718559. PMID 38723085.
Kim; et al. (2014). "Space–time wiring specificity supports direction selectivity in the retina". Nature. 509 (7500): 331–336. Bibcode:2014Natur.509..331.. doi:10.1038/nature13240. PMC 4074887. PMID 24805243.
Bianchi, Serena; Bauernfeind, Amy L.; Gupta, Kanika; Stimpson, Cheryl D.; Spocter, Muhammad A.; Bonar, Christopher J.; Manger, Paul R.; Hof, Patrick R.; Jacobs, Bob (2011-04-01). "Neocortical neuron morphology in Afrotheria: comparing the rock hyrax with the African elephant". Annals of the New York Academy of Sciences. 1225 (1): 37–46. Bibcode:2011NYASA1225...37B. doi:10.1111/j.1749-6632.2011.05991.x. ISSN 1749-6632. PMID 21534991. S2CID 18281955.

mit.edu

news.mit.edu

"Using AI to optimize for rapid neural imaging". MIT News | Massachusetts Institute of Technology. 2023-11-06. Retrieved 2025-05-30.

mssm.edu

research.mssm.edu

Rodriguez, Alfredo (2010-02-18). "Tools: NeuronStudio (Beta) Version 0.9.92, last updated on November 19, 2009". CNIC, Mount Sinai School of Medicine. Archived from the original on 2018-09-16.

nature.com

Boergens, Kevin M.; Berning, Manuel; Bocklisch, Tom; Bräunlein, Dominic; Drawitsch, Florian; Frohnhofen, Johannes; Herold, Tom; Otto, Philipp; Rzepka, Norman; Werkmeister, Thomas; Werner, Daniel; Wiese, Georg; Wissler, Heiko; Helmstaedter, Moritz (July 2017). "webKnossos: efficient online 3D data annotation for connectomics". Nature Methods. 14 (7): 691–694. doi:10.1038/nmeth.4331. ISSN 1548-7105. PMID 28604722. S2CID 30609228.

nih.gov

pubmed.ncbi.nlm.nih.gov

Saleeba, Christine; Dempsey, Bowen; Le, Sheng; Goodchild, Ann; McMullan, Simon (27 Aug 2019). "A Student's Guide to Neural Circuit Tracing". Frontiers in Neuroscience. 13: 897. doi:10.3389/fnins.2019.00897. ISSN 1662-4548. PMC 6718611. PMID 31507369.
Peng, Hanchuan; Roysam, Badri; Ascoli, Giorgio (2013). "Automated image computing reshapes computational neuroscience". BMC Bioinformatics. 14: 293. doi:10.1186/1471-2105-14-293. PMC 3853071. PMID 24090217.
Meijering, Erik (2010). "Neuron Tracing in Perspective". Cytometry Part A. 77 (7): 693–704. CiteSeerX 10.1.1.623.3000. doi:10.1002/cyto.a.20895. PMID 20583273. S2CID 14047936.
Peng, H., Long, F., Zhao, T., and Myers, E.W. (2011). "Proof-editing is the bottleneck of 3D neuron reconstruction: the problem and solutions". Neuroinformatics. 9 (2–3): 103–105. doi:10.1007/s12021-010-9090-x. PMID 21170608. S2CID 4995280.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Peng, H., Tang, J., Xiao, H., Bria, A.; et al. (2014). "Virtual finger boosts three-dimensional imaging and microsurgery as well as terabyte volume image visualization and analysis". Nature Communications. 5: 4342. Bibcode:2014NatCo...5.4342P. doi:10.1038/ncomms5342. PMC 4104457. PMID 25014658.{{cite journal}}: CS1 maint: multiple names: authors list (link)
Svara, Fabian; Förster, Dominique; Kubo, Fumi; Januszewski, Michał; dal Maschio, Marco; Schubert, Philipp J.; Kornfeld, Jörgen; Wanner, Adrian A.; Laurell, Eva; Denk, Winfried; Baier, Herwig (24 October 2022). "Automated synapse-level reconstruction of neural circuits in the larval zebrafish brain". Nature Methods. 19 (11): 1357–1366. doi:10.1038/s41592-022-01621-0. ISSN 1548-7091. PMC 9636024. PMID 36280717.
Dorkenwald, Sven; Matsliah, Arie; Sterling, Amy R.; Schlegel, Philipp; Yu, Szi-chieh; McKellar, Claire E.; Lin, Albert; Costa, Marta; Eichler, Katharina; Yin, Yijie; Silversmith, Will; Schneider-Mizell, Casey; Jordan, Chris S.; Brittain, Derrick; Halageri, Akhilesh (3 October 2024). "Neuronal wiring diagram of an adult brain". Nature. 634 (8032): 124–138. doi:10.1038/s41586-024-07558-y. ISSN 0028-0836. PMC 11446842. PMID 39358518.
Glaser, E. M.; Vanderloos, H. (1965-01-01). "A Semi-Automatic Computer-Microscope for the Analysis of Neuronal Morphology". IEEE Transactions on Biomedical Engineering. 12: 22–31. doi:10.1109/TBME.1965.4502337. ISSN 0018-9294. PMID 14291539.
Zheng, Zhihao; Lauritzen, J. Scott; Perlman, Eric; Robinson, Camenzind G.; Nichols, Matthew; Milkie, Daniel; Torrens, Omar; Price, John; Fisher, Corey B.; Sharifi, Nadiya; Calle-Schuler, Steven A.; Kmecova, Lucia; Ali, Iqbal J.; Karsh, Bill; Trautman, Eric T. (26 July 2018). "A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster". Cell. 174 (3): 730–743.e22. doi:10.1016/j.cell.2018.06.019. ISSN 0092-8674. PMC 6063995. PMID 30033368.
Randel, Nadine; Shahidi, Réza; Verasztó, Csaba; Bezares-Calderón, Luis A; Schmidt, Steffen; Jékely, Gáspár (10 June 2015). Marder, Eve (ed.). "Inter-individual stereotypy of the Platynereis larval visual connectome". eLife. 4: e08069. doi:10.7554/eLife.08069. ISSN 2050-084X. PMC 4477197. PMID 26061864.
Shapson-Coe, Alexander; Januszewski, Michał; Berger, Daniel R.; Pope, Art; Wu, Yuelong; Blakely, Tim; Schalek, Richard L.; Li, Peter H.; Wang, Shuohong; Maitin-Shepard, Jeremy; Karlupia, Neha; Dorkenwald, Sven; Sjostedt, Evelina; Leavitt, Laramie; Lee, Dongil (10 May 2024). "A petavoxel fragment of human cerebral cortex reconstructed at nanoscale resolution". Science. 384 (6696): eadk4858. Bibcode:2024Sci...384k4858S. doi:10.1126/science.adk4858. ISSN 0036-8075. PMC 11718559. PMID 38723085.
Al-Kofahi, K.A.; et al. (2002). "Rapid automated three-dimensional tracing of neurons from confocal image stacks". IEEE Trans. Inf. Technol. Biomed. 6 (2): 171–187. CiteSeerX 10.1.1.57.9339. doi:10.1109/titb.2002.1006304. PMID 12075671. S2CID 12413677.
Peng, H.; et al. (2011). "Automatic 3D neuron tracing using all-path pruning". Bioinformatics. 27 (13): i239 – i247. doi:10.1093/bioinformatics/btr237. PMC 3117353. PMID 21685076.
Rodriguez, A.; et al. (2009). "Three-dimensional neuron tracing by voxel scooping". J. Neurosci. Methods. 184 (1): 169–175. doi:10.1016/j.jneumeth.2009.07.021. PMC 2753723. PMID 19632273.
Xiao, H; et al. (2013). "APP2: automatic tracing of 3D neuron morphology based on hierarchical pruning of gray-weighted image distance-trees". Bioinformatics. 29 (11): 1448–1454. doi:10.1093/bioinformatics/btt170. PMC 3661058. PMID 23603332.
Schlegel, Philipp; Yin, Yijie; Bates, Alexander S.; Dorkenwald, Sven; Eichler, Katharina; Brooks, Paul; Han, Daniel S.; Gkantia, Marina; dos Santos, Marcia; Munnelly, Eva J.; Badalamente, Griffin; Serratosa Capdevila, Laia; Sane, Varun A.; Fragniere, Alexandra M. C.; Kiassat, Ladann (3 October 2024). "Whole-brain annotation and multi-connectome cell typing of Drosophila". Nature. 634 (8032): 139–152. doi:10.1038/s41586-024-07686-5. ISSN 0028-0836. PMC 11446831. PMID 39358521.
Liu, Y (2011). "The DIADEM and beyond". Neuroinformatics. 9 (2–3): 99–102. doi:10.1007/s12021-011-9102-5. PMID 21431331.
Helmstaedter M, Briggman KL, Denk W (2011). "High-accuracy neurite reconstruction for high-throughput neuroanatomy". Nat Neurosci. 14 (8): 1081–1088. doi:10.1038/nn.2868. PMID 21743472. S2CID 17795934.
Kim; et al. (2014). "Space–time wiring specificity supports direction selectivity in the retina". Nature. 509 (7500): 331–336. Bibcode:2014Natur.509..331.. doi:10.1038/nature13240. PMC 4074887. PMID 24805243.
Halavi, Maryam; Hamilton, Kelly A.; Parekh, Ruchi; Ascoli, Giorgio A. (2012-01-01). "Digital reconstructions of neuronal morphology: three decades of research trends". Frontiers in Neuroscience. 6: 49. doi:10.3389/fnins.2012.00049. ISSN 1662-453X. PMC 3332236. PMID 22536169.
Aguiar, Paulo; Sousa, Mafalda; Szucs, Peter (2013-06-14). "Versatile Morphometric Analysis and Visualization of the Three-Dimensional Structure of Neurons". Neuroinformatics. 11 (4): 393–403. doi:10.1007/s12021-013-9188-z. ISSN 1539-2791. PMID 23765606. S2CID 16591493.
Peng, Hanchuan; Hawrylycz, Michael; Roskams, Jane (2015-07-15). "BigNeuron: Large-Scale 3D Neuron Reconstruction from Optical Microscopy Images". Neuron. 87 (2): 252–256. doi:10.1016/j.neuron.2015.06.036. PMC 4725298. PMID 26182412.
Boergens, Kevin M.; Berning, Manuel; Bocklisch, Tom; Bräunlein, Dominic; Drawitsch, Florian; Frohnhofen, Johannes; Herold, Tom; Otto, Philipp; Rzepka, Norman; Werkmeister, Thomas; Werner, Daniel; Wiese, Georg; Wissler, Heiko; Helmstaedter, Moritz (July 2017). "webKnossos: efficient online 3D data annotation for connectomics". Nature Methods. 14 (7): 691–694. doi:10.1038/nmeth.4331. ISSN 1548-7105. PMID 28604722. S2CID 30609228.
Bianchi, Serena; Stimpson, Cheryl D.; Bauernfeind, Amy L.; Schapiro, Steven J.; Baze, Wallace B.; McArthur, Mark J.; Bronson, Ellen; Hopkins, William D.; Semendeferi, Katerina (2013-10-01). "Dendritic Morphology of Pyramidal Neurons in the Chimpanzee Neocortex: Regional Specializations and Comparison to Humans". Cerebral Cortex. 23 (10): 2429–2436. doi:10.1093/cercor/bhs239. ISSN 1047-3211. PMC 3767963. PMID 22875862.
Silberberg, Gilad; Markram, Henry (2007-03-01). "Disynaptic Inhibition between Neocortical Pyramidal Cells Mediated by Martinotti Cells". Neuron. 53 (5): 735–746. doi:10.1016/j.neuron.2007.02.012. ISSN 0896-6273. PMID 17329212. S2CID 15624023.
Bianchi, Serena; Bauernfeind, Amy L.; Gupta, Kanika; Stimpson, Cheryl D.; Spocter, Muhammad A.; Bonar, Christopher J.; Manger, Paul R.; Hof, Patrick R.; Jacobs, Bob (2011-04-01). "Neocortical neuron morphology in Afrotheria: comparing the rock hyrax with the African elephant". Annals of the New York Academy of Sciences. 1225 (1): 37–46. Bibcode:2011NYASA1225...37B. doi:10.1111/j.1749-6632.2011.05991.x. ISSN 1749-6632. PMID 21534991. S2CID 18281955.
Ascoli GA, Donohue DE, Halavi M (2007). "NeuroMorpho.Org - A central resource for neuronal morphologies". J Neurosci. 27 (35): 9247–9251. doi:10.1523/jneurosci.2055-07.2007. PMC 6673130. PMID 17728438.
Svara, Fabian; Förster, Dominique; Kubo, Fumi; Januszewski, Michał; dal Maschio, Marco; Schubert, Philipp J.; Kornfeld, Jörgen; Wanner, Adrian A.; Laurell, Eva; Denk, Winfried; Baier, Herwig (24 October 2022). "Automated synapse-level reconstruction of neural circuits in the larval zebrafish brain". Nature Methods. 19 (11): 1357–1366. doi:10.1038/s41592-022-01621-0. ISSN 1548-7091. PMC 9636024. PMID 36280717.
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ncbi.nlm.nih.gov

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worldcat.org

search.worldcat.org

Saleeba, Christine; Dempsey, Bowen; Le, Sheng; Goodchild, Ann; McMullan, Simon (27 Aug 2019). "A Student's Guide to Neural Circuit Tracing". Frontiers in Neuroscience. 13: 897. doi:10.3389/fnins.2019.00897. ISSN 1662-4548. PMC 6718611. PMID 31507369.
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Randel, Nadine; Shahidi, Réza; Verasztó, Csaba; Bezares-Calderón, Luis A; Schmidt, Steffen; Jékely, Gáspár (10 June 2015). Marder, Eve (ed.). "Inter-individual stereotypy of the Platynereis larval visual connectome". eLife. 4: e08069. doi:10.7554/eLife.08069. ISSN 2050-084X. PMC 4477197. PMID 26061864.
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Schlegel, Philipp; Yin, Yijie; Bates, Alexander S.; Dorkenwald, Sven; Eichler, Katharina; Brooks, Paul; Han, Daniel S.; Gkantia, Marina; dos Santos, Marcia; Munnelly, Eva J.; Badalamente, Griffin; Serratosa Capdevila, Laia; Sane, Varun A.; Fragniere, Alexandra M. C.; Kiassat, Ladann (3 October 2024). "Whole-brain annotation and multi-connectome cell typing of Drosophila". Nature. 634 (8032): 139–152. doi:10.1038/s41586-024-07686-5. ISSN 0028-0836. PMC 11446831. PMID 39358521.
Halavi, Maryam; Hamilton, Kelly A.; Parekh, Ruchi; Ascoli, Giorgio A. (2012-01-01). "Digital reconstructions of neuronal morphology: three decades of research trends". Frontiers in Neuroscience. 6: 49. doi:10.3389/fnins.2012.00049. ISSN 1662-453X. PMC 3332236. PMID 22536169.
Aguiar, Paulo; Sousa, Mafalda; Szucs, Peter (2013-06-14). "Versatile Morphometric Analysis and Visualization of the Three-Dimensional Structure of Neurons". Neuroinformatics. 11 (4): 393–403. doi:10.1007/s12021-013-9188-z. ISSN 1539-2791. PMID 23765606. S2CID 16591493.
Boergens, Kevin M.; Berning, Manuel; Bocklisch, Tom; Bräunlein, Dominic; Drawitsch, Florian; Frohnhofen, Johannes; Herold, Tom; Otto, Philipp; Rzepka, Norman; Werkmeister, Thomas; Werner, Daniel; Wiese, Georg; Wissler, Heiko; Helmstaedter, Moritz (July 2017). "webKnossos: efficient online 3D data annotation for connectomics". Nature Methods. 14 (7): 691–694. doi:10.1038/nmeth.4331. ISSN 1548-7105. PMID 28604722. S2CID 30609228.
Bianchi, Serena; Stimpson, Cheryl D.; Bauernfeind, Amy L.; Schapiro, Steven J.; Baze, Wallace B.; McArthur, Mark J.; Bronson, Ellen; Hopkins, William D.; Semendeferi, Katerina (2013-10-01). "Dendritic Morphology of Pyramidal Neurons in the Chimpanzee Neocortex: Regional Specializations and Comparison to Humans". Cerebral Cortex. 23 (10): 2429–2436. doi:10.1093/cercor/bhs239. ISSN 1047-3211. PMC 3767963. PMID 22875862.
Silberberg, Gilad; Markram, Henry (2007-03-01). "Disynaptic Inhibition between Neocortical Pyramidal Cells Mediated by Martinotti Cells". Neuron. 53 (5): 735–746. doi:10.1016/j.neuron.2007.02.012. ISSN 0896-6273. PMID 17329212. S2CID 15624023.
Bianchi, Serena; Bauernfeind, Amy L.; Gupta, Kanika; Stimpson, Cheryl D.; Spocter, Muhammad A.; Bonar, Christopher J.; Manger, Paul R.; Hof, Patrick R.; Jacobs, Bob (2011-04-01). "Neocortical neuron morphology in Afrotheria: comparing the rock hyrax with the African elephant". Annals of the New York Academy of Sciences. 1225 (1): 37–46. Bibcode:2011NYASA1225...37B. doi:10.1111/j.1749-6632.2011.05991.x. ISSN 1749-6632. PMID 21534991. S2CID 18281955.
Svara, Fabian; Förster, Dominique; Kubo, Fumi; Januszewski, Michał; dal Maschio, Marco; Schubert, Philipp J.; Kornfeld, Jörgen; Wanner, Adrian A.; Laurell, Eva; Denk, Winfried; Baier, Herwig (24 October 2022). "Automated synapse-level reconstruction of neural circuits in the larval zebrafish brain". Nature Methods. 19 (11): 1357–1366. doi:10.1038/s41592-022-01621-0. ISSN 1548-7091. PMC 9636024. PMID 36280717.
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