Neutral network (evolution) (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Neutral network (evolution)" in English language version.

refsWebsite

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46nih.gov

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39doi.org

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9harvard.edu

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8semanticscholar.org

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4arxiv.org

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2jstor.org

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2worldcat.org

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1handle.net

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1univie.ac.at

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arxiv.org

van Nimwegen, E; Crutchfield, JP; Huynen, M (Aug 17, 1999). "Neutral evolution of mutational robustness". Proceedings of the National Academy of Sciences of the United States of America. 96 (17): 9716–20. arXiv:adap-org/9903006. Bibcode:1999PNAS...96.9716V. doi:10.1073/pnas.96.17.9716. PMC 22276. PMID 10449760.
Shakhnovich, BE; Deeds, E; Delisi, C; Shakhnovich, E (Mar 2005). "Protein structure and evolutionary history determine sequence space topology". Genome Research. 15 (3): 385–92. arXiv:q-bio/0404040. doi:10.1101/gr.3133605. PMC 551565. PMID 15741509.
van Nimwegen E.; Crutchfield J. P.; Huynen M. (1999). "Neutral evolution of mutational robustness". PNAS. 96 (17): 9716–9720. arXiv:adap-org/9903006. Bibcode:1999PNAS...96.9716V. doi:10.1073/pnas.96.17.9716. PMC 22276. PMID 10449760.
Bloom, JD; Lu, Z; Chen, D; Raval, A; Venturelli, OS; Arnold, FH (Jul 17, 2007). "Evolution favors protein mutational robustness in sufficiently large populations". BMC Biology. 5: 29. arXiv:0704.1885. doi:10.1186/1741-7007-5-29. PMC 1995189. PMID 17640347.

doi.org

van Nimwegen, E; Crutchfield, JP; Huynen, M (Aug 17, 1999). "Neutral evolution of mutational robustness". Proceedings of the National Academy of Sciences of the United States of America. 96 (17): 9716–20. arXiv:adap-org/9903006. Bibcode:1999PNAS...96.9716V. doi:10.1073/pnas.96.17.9716. PMC 22276. PMID 10449760.
Taverna, DM; Goldstein, RA (Jan 18, 2002). "Why are proteins so robust to site mutations?". Journal of Molecular Biology. 315 (3): 479–84. doi:10.1006/jmbi.2001.5226. PMID 11786027.
Tokuriki, N; Tawfik, DS (Oct 2009). "Stability effects of mutations and protein evolvability". Current Opinion in Structural Biology. 19 (5): 596–604. doi:10.1016/j.sbi.2009.08.003. PMID 19765975.
Meyerguz, L; Kleinberg, J; Elber, R (Jul 10, 2007). "The network of sequence flow between protein structures". Proceedings of the National Academy of Sciences of the United States of America. 104 (28): 11627–32. Bibcode:2007PNAS..10411627M. doi:10.1073/pnas.0701393104. PMC 1913895. PMID 17596339.
Karplus, M (Jun 17, 2011). "Behind the folding funnel diagram". Nature Chemical Biology. 7 (7): 401–4. doi:10.1038/nchembio.565. PMID 21685880.
Tokuriki, N; Stricher, F; Schymkowitz, J; Serrano, L; Tawfik, DS (Jun 22, 2007). "The stability effects of protein mutations appear to be universally distributed". Journal of Molecular Biology. 369 (5): 1318–32. doi:10.1016/j.jmb.2007.03.069. PMID 17482644. S2CID 24638570.
Shakhnovich, BE; Deeds, E; Delisi, C; Shakhnovich, E (Mar 2005). "Protein structure and evolutionary history determine sequence space topology". Genome Research. 15 (3): 385–92. arXiv:q-bio/0404040. doi:10.1101/gr.3133605. PMC 551565. PMID 15741509.
Monsellier, E; Chiti, F (Aug 2007). "Prevention of amyloid-like aggregation as a driving force of protein evolution". EMBO Reports. 8 (8): 737–42. doi:10.1038/sj.embor.7401034. PMC 1978086. PMID 17668004.
Fink, AL (1998). "Protein aggregation: folding aggregates, inclusion bodies and amyloid". Folding & Design. 3 (1): R9-23. doi:10.1016/s1359-0278(98)00002-9. PMID 9502314.
Richardson, JS; Richardson, DC (Mar 5, 2002). "Natural beta-sheet proteins use negative design to avoid edge-to-edge aggregation". Proceedings of the National Academy of Sciences of the United States of America. 99 (5): 2754–9. Bibcode:2002PNAS...99.2754R. doi:10.1073/pnas.052706099. PMC 122420. PMID 11880627.
Müller, MM; Allison, JR; Hongdilokkul, N; Gaillon, L; Kast, P; van Gunsteren, WF; Marlière, P; Hilvert, D (2013). "Directed evolution of a model primordial enzyme provides insights into the development of the genetic code". PLOS Genetics. 9 (1): e1003187. doi:10.1371/journal.pgen.1003187. PMC 3536711. PMID 23300488.
Firnberg, E; Ostermeier, M (Aug 2013). "The genetic code constrains yet facilitates Darwinian evolution". Nucleic Acids Research. 41 (15): 7420–8. doi:10.1093/nar/gkt536. PMC 3753648. PMID 23754851.
Hietpas, RT; Jensen, JD; Bolon, DN (May 10, 2011). "Experimental illumination of a fitness landscape". Proceedings of the National Academy of Sciences of the United States of America. 108 (19): 7896–901. Bibcode:2011PNAS..108.7896H. doi:10.1073/pnas.1016024108. PMC 3093508. PMID 21464309.
Kimura, M. (1968). "Evolutionary Rate at the Molecular Level". Nature. 217 (5129): 624–6. Bibcode:1968Natur.217..624K. doi:10.1038/217624a0. PMID 5637732. S2CID 4161261.
Proulx, SR; Adler, FR (Jul 2010). "The standard of neutrality: still flapping in the breeze?". Journal of Evolutionary Biology. 23 (7): 1339–50. doi:10.1111/j.1420-9101.2010.02006.x. PMID 20492093. S2CID 7774510.
van Nimwegen E.; Crutchfield J. P.; Huynen M. (1999). "Neutral evolution of mutational robustness". PNAS. 96 (17): 9716–9720. arXiv:adap-org/9903006. Bibcode:1999PNAS...96.9716V. doi:10.1073/pnas.96.17.9716. PMC 22276. PMID 10449760.
Bloom, JD; Lu, Z; Chen, D; Raval, A; Venturelli, OS; Arnold, FH (Jul 17, 2007). "Evolution favors protein mutational robustness in sufficiently large populations". BMC Biology. 5: 29. arXiv:0704.1885. doi:10.1186/1741-7007-5-29. PMC 1995189. PMID 17640347.
Bershtein, Shimon; Goldin, Korina; Tawfik, Dan S. (June 2008). "Intense Neutral Drifts Yield Robust and Evolvable Consensus Proteins". Journal of Molecular Biology. 379 (5): 1029–1044. doi:10.1016/j.jmb.2008.04.024. PMID 18495157.
Coyne, JA; Barton NH; Turelli M (1997). "Perspective: a critique of Sewall Wright's shifting balance theory of evolution". Evolution. 51 (3): 643–671. doi:10.2307/2411143. JSTOR 2411143. PMID 28568586.
Davies, E. K. (10 September 1999). "High Frequency of Cryptic Deleterious Mutations in Caenorhabditis elegans". Science. 285 (5434): 1748–1751. doi:10.1126/science.285.5434.1748. PMID 10481013.
Masel, J (Mar 2006). "Cryptic genetic variation is enriched for potential adaptations". Genetics. 172 (3): 1985–91. doi:10.1534/genetics.105.051649. PMC 1456269. PMID 16387877.
Hayden, EJ; Ferrada, E; Wagner, A (Jun 2, 2011). "Cryptic genetic variation promotes rapid evolutionary adaptation in an RNA enzyme" (PDF). Nature. 474 (7349): 92–5. doi:10.1038/nature10083. PMID 21637259. S2CID 4390213.
Bornberg-Bauer, E; Huylmans, AK; Sikosek, T (Jun 2010). "How do new proteins arise?". Current Opinion in Structural Biology. 20 (3): 390–6. doi:10.1016/j.sbi.2010.02.005. PMID 20347587.
Kimura, M (1968). "Evolutionary Rate at the Molecular Level". Nature. 217 (5129): 624–6. Bibcode:1968Natur.217..624K. doi:10.1038/217624a0. PMID 5637732. S2CID 4161261.
King, JL; Jukes, TH (1969). "Non-Darwinian Evolution". Science. 164 (3881): 788–97. Bibcode:1969Sci...164..788L. doi:10.1126/science.164.3881.788. PMID 5767777.
Crick, FH (1968). "The origin of the genetic code". Journal of Molecular Biology. 38 (3): 367–79. doi:10.1016/0022-2836(68)90392-6. PMID 4887876.
Robertson, MP; Joyce, GF (2012). "The origins of the RNA world". Cold Spring Harbor Perspectives in Biology. 4 (5): a003608. doi:10.1101/cshperspect.a003608. PMC 3331698. PMID 20739415.
Stein, P.R.; Waterman, M.S. (1978). "On some new sequences generalizing the Catalan and Motzkin numbers". Discrete Math. 26 (3): 261–272. doi:10.1016/0012-365x(79)90033-5.
Smith, Temple F.; Waterman, Michael S. (1981). "Identification of common molecular subsequences". Journal of Molecular Biology. 147 (1): 195–197. doi:10.1016/0022-2836(81)90087-5. PMID 7265238.
Nussiniv; et al. (1978). "Algorithms for Loop Matchings". SIAM Journal on Applied Mathematics. 35 (1): 68–82. doi:10.1137/0135006. JSTOR 2101031.
Howell, J.A.; Smith, T.F.; Waterman, M.S. (1980). "Computation of generating functions for biological molecules". SIAM J. Appl. Math. 39: 119133. doi:10.1137/0139010.
Sankoff, David (October 1985). "Simultaneous Solution of the RNA Folding, Alignment and Protosequence Problems". SIAM Journal on Applied Mathematics. 45 (5): 810–825. doi:10.1137/0145048.
Waterman, M.S.; Smith, T.F. (1986). "Rapid dynamic programming algorithms for RNA secondary structure". Adv. Appl. Math. 7 (4): 455–464. doi:10.1016/0196-8858(86)90025-4.
McCaskill, John (1990). "The Equilibrium Partition Function and Base Pair Binding Probabilities for RNA Secondary Structure". Biopolymers. 29 (6–7): 1105–19. doi:10.1002/bip.360290621. hdl:11858/00-001M-0000-0013-0DE3-9. PMID 1695107. S2CID 12629688.
Zuker, Michael; Stiegler, Patrick (1981). "Optimal Computer Folding of Large RNA Sequences Using Thermodynamics". Nucleic Acids Research. 9 (1): 133–148. doi:10.1093/nar/9.1.133. PMC 326673. PMID 6163133.
Studnicka, Gary M.; Rahn, Georgia M.; Cummings, Ian W.; Salser, Winston A. (1978-09-01). "Computer method for predicting the secondary structure of single-stranded RNA". Nucleic Acids Research. 5 (9): 3365–3388. doi:10.1093/nar/5.9.3365. ISSN 0305-1048. PMC 342256. PMID 100768.
Hofacker, I.L.; Fontana, W.; Stadler, P.F.; et al. (1994). "Fast folding and comparison of RNA secondary structures". Monatsh Chem. 125 (2): 167. doi:10.1007/BF00818163. S2CID 19344304.
Schuster, Peter; Fontana, Walter; Stadler, Peter F.; Hofacker, Ivo L. (1994-03-22). "From Sequences to Shapes and Back: A Case Study in RNA Secondary Structures". Proceedings of the Royal Society of London B: Biological Sciences. 255 (1344): 279–284. Bibcode:1994RSPSB.255..279S. doi:10.1098/rspb.1994.0040. ISSN 0962-8452. PMID 7517565. S2CID 12021473.
Hofacker, Ivo L.; Schuster, Peter; Stadler, Peter F. (1998). "Combinatorics of RNA secondary structures". Discrete Applied Mathematics. 88 (1–3): 207–237. doi:10.1016/s0166-218x(98)00073-0.

handle.net

hdl.handle.net

McCaskill, John (1990). "The Equilibrium Partition Function and Base Pair Binding Probabilities for RNA Secondary Structure". Biopolymers. 29 (6–7): 1105–19. doi:10.1002/bip.360290621. hdl:11858/00-001M-0000-0013-0DE3-9. PMID 1695107. S2CID 12629688.

harvard.edu

ui.adsabs.harvard.edu

van Nimwegen, E; Crutchfield, JP; Huynen, M (Aug 17, 1999). "Neutral evolution of mutational robustness". Proceedings of the National Academy of Sciences of the United States of America. 96 (17): 9716–20. arXiv:adap-org/9903006. Bibcode:1999PNAS...96.9716V. doi:10.1073/pnas.96.17.9716. PMC 22276. PMID 10449760.
Meyerguz, L; Kleinberg, J; Elber, R (Jul 10, 2007). "The network of sequence flow between protein structures". Proceedings of the National Academy of Sciences of the United States of America. 104 (28): 11627–32. Bibcode:2007PNAS..10411627M. doi:10.1073/pnas.0701393104. PMC 1913895. PMID 17596339.
Richardson, JS; Richardson, DC (Mar 5, 2002). "Natural beta-sheet proteins use negative design to avoid edge-to-edge aggregation". Proceedings of the National Academy of Sciences of the United States of America. 99 (5): 2754–9. Bibcode:2002PNAS...99.2754R. doi:10.1073/pnas.052706099. PMC 122420. PMID 11880627.
Hietpas, RT; Jensen, JD; Bolon, DN (May 10, 2011). "Experimental illumination of a fitness landscape". Proceedings of the National Academy of Sciences of the United States of America. 108 (19): 7896–901. Bibcode:2011PNAS..108.7896H. doi:10.1073/pnas.1016024108. PMC 3093508. PMID 21464309.
Kimura, M. (1968). "Evolutionary Rate at the Molecular Level". Nature. 217 (5129): 624–6. Bibcode:1968Natur.217..624K. doi:10.1038/217624a0. PMID 5637732. S2CID 4161261.
van Nimwegen E.; Crutchfield J. P.; Huynen M. (1999). "Neutral evolution of mutational robustness". PNAS. 96 (17): 9716–9720. arXiv:adap-org/9903006. Bibcode:1999PNAS...96.9716V. doi:10.1073/pnas.96.17.9716. PMC 22276. PMID 10449760.
Kimura, M (1968). "Evolutionary Rate at the Molecular Level". Nature. 217 (5129): 624–6. Bibcode:1968Natur.217..624K. doi:10.1038/217624a0. PMID 5637732. S2CID 4161261.
King, JL; Jukes, TH (1969). "Non-Darwinian Evolution". Science. 164 (3881): 788–97. Bibcode:1969Sci...164..788L. doi:10.1126/science.164.3881.788. PMID 5767777.
Schuster, Peter; Fontana, Walter; Stadler, Peter F.; Hofacker, Ivo L. (1994-03-22). "From Sequences to Shapes and Back: A Case Study in RNA Secondary Structures". Proceedings of the Royal Society of London B: Biological Sciences. 255 (1344): 279–284. Bibcode:1994RSPSB.255..279S. doi:10.1098/rspb.1994.0040. ISSN 0962-8452. PMID 7517565. S2CID 12021473.

jstor.org

Coyne, JA; Barton NH; Turelli M (1997). "Perspective: a critique of Sewall Wright's shifting balance theory of evolution". Evolution. 51 (3): 643–671. doi:10.2307/2411143. JSTOR 2411143. PMID 28568586.
Nussiniv; et al. (1978). "Algorithms for Loop Matchings". SIAM Journal on Applied Mathematics. 35 (1): 68–82. doi:10.1137/0135006. JSTOR 2101031.

nih.gov

pubmed.ncbi.nlm.nih.gov

van Nimwegen, E; Crutchfield, JP; Huynen, M (Aug 17, 1999). "Neutral evolution of mutational robustness". Proceedings of the National Academy of Sciences of the United States of America. 96 (17): 9716–20. arXiv:adap-org/9903006. Bibcode:1999PNAS...96.9716V. doi:10.1073/pnas.96.17.9716. PMC 22276. PMID 10449760.
Taverna, DM; Goldstein, RA (Jan 18, 2002). "Why are proteins so robust to site mutations?". Journal of Molecular Biology. 315 (3): 479–84. doi:10.1006/jmbi.2001.5226. PMID 11786027.
Tokuriki, N; Tawfik, DS (Oct 2009). "Stability effects of mutations and protein evolvability". Current Opinion in Structural Biology. 19 (5): 596–604. doi:10.1016/j.sbi.2009.08.003. PMID 19765975.
Meyerguz, L; Kleinberg, J; Elber, R (Jul 10, 2007). "The network of sequence flow between protein structures". Proceedings of the National Academy of Sciences of the United States of America. 104 (28): 11627–32. Bibcode:2007PNAS..10411627M. doi:10.1073/pnas.0701393104. PMC 1913895. PMID 17596339.
Karplus, M (Jun 17, 2011). "Behind the folding funnel diagram". Nature Chemical Biology. 7 (7): 401–4. doi:10.1038/nchembio.565. PMID 21685880.
Tokuriki, N; Stricher, F; Schymkowitz, J; Serrano, L; Tawfik, DS (Jun 22, 2007). "The stability effects of protein mutations appear to be universally distributed". Journal of Molecular Biology. 369 (5): 1318–32. doi:10.1016/j.jmb.2007.03.069. PMID 17482644. S2CID 24638570.
Shakhnovich, BE; Deeds, E; Delisi, C; Shakhnovich, E (Mar 2005). "Protein structure and evolutionary history determine sequence space topology". Genome Research. 15 (3): 385–92. arXiv:q-bio/0404040. doi:10.1101/gr.3133605. PMC 551565. PMID 15741509.
Monsellier, E; Chiti, F (Aug 2007). "Prevention of amyloid-like aggregation as a driving force of protein evolution". EMBO Reports. 8 (8): 737–42. doi:10.1038/sj.embor.7401034. PMC 1978086. PMID 17668004.
Fink, AL (1998). "Protein aggregation: folding aggregates, inclusion bodies and amyloid". Folding & Design. 3 (1): R9-23. doi:10.1016/s1359-0278(98)00002-9. PMID 9502314.
Richardson, JS; Richardson, DC (Mar 5, 2002). "Natural beta-sheet proteins use negative design to avoid edge-to-edge aggregation". Proceedings of the National Academy of Sciences of the United States of America. 99 (5): 2754–9. Bibcode:2002PNAS...99.2754R. doi:10.1073/pnas.052706099. PMC 122420. PMID 11880627.
Müller, MM; Allison, JR; Hongdilokkul, N; Gaillon, L; Kast, P; van Gunsteren, WF; Marlière, P; Hilvert, D (2013). "Directed evolution of a model primordial enzyme provides insights into the development of the genetic code". PLOS Genetics. 9 (1): e1003187. doi:10.1371/journal.pgen.1003187. PMC 3536711. PMID 23300488.
Firnberg, E; Ostermeier, M (Aug 2013). "The genetic code constrains yet facilitates Darwinian evolution". Nucleic Acids Research. 41 (15): 7420–8. doi:10.1093/nar/gkt536. PMC 3753648. PMID 23754851.
Hietpas, RT; Jensen, JD; Bolon, DN (May 10, 2011). "Experimental illumination of a fitness landscape". Proceedings of the National Academy of Sciences of the United States of America. 108 (19): 7896–901. Bibcode:2011PNAS..108.7896H. doi:10.1073/pnas.1016024108. PMC 3093508. PMID 21464309.
Kimura, M. (1968). "Evolutionary Rate at the Molecular Level". Nature. 217 (5129): 624–6. Bibcode:1968Natur.217..624K. doi:10.1038/217624a0. PMID 5637732. S2CID 4161261.
Proulx, SR; Adler, FR (Jul 2010). "The standard of neutrality: still flapping in the breeze?". Journal of Evolutionary Biology. 23 (7): 1339–50. doi:10.1111/j.1420-9101.2010.02006.x. PMID 20492093. S2CID 7774510.
van Nimwegen E.; Crutchfield J. P.; Huynen M. (1999). "Neutral evolution of mutational robustness". PNAS. 96 (17): 9716–9720. arXiv:adap-org/9903006. Bibcode:1999PNAS...96.9716V. doi:10.1073/pnas.96.17.9716. PMC 22276. PMID 10449760.
Bloom, JD; Lu, Z; Chen, D; Raval, A; Venturelli, OS; Arnold, FH (Jul 17, 2007). "Evolution favors protein mutational robustness in sufficiently large populations". BMC Biology. 5: 29. arXiv:0704.1885. doi:10.1186/1741-7007-5-29. PMC 1995189. PMID 17640347.
Bershtein, Shimon; Goldin, Korina; Tawfik, Dan S. (June 2008). "Intense Neutral Drifts Yield Robust and Evolvable Consensus Proteins". Journal of Molecular Biology. 379 (5): 1029–1044. doi:10.1016/j.jmb.2008.04.024. PMID 18495157.
Coyne, JA; Barton NH; Turelli M (1997). "Perspective: a critique of Sewall Wright's shifting balance theory of evolution". Evolution. 51 (3): 643–671. doi:10.2307/2411143. JSTOR 2411143. PMID 28568586.
Davies, E. K. (10 September 1999). "High Frequency of Cryptic Deleterious Mutations in Caenorhabditis elegans". Science. 285 (5434): 1748–1751. doi:10.1126/science.285.5434.1748. PMID 10481013.
Masel, J (Mar 2006). "Cryptic genetic variation is enriched for potential adaptations". Genetics. 172 (3): 1985–91. doi:10.1534/genetics.105.051649. PMC 1456269. PMID 16387877.
Hayden, EJ; Ferrada, E; Wagner, A (Jun 2, 2011). "Cryptic genetic variation promotes rapid evolutionary adaptation in an RNA enzyme" (PDF). Nature. 474 (7349): 92–5. doi:10.1038/nature10083. PMID 21637259. S2CID 4390213.
Bornberg-Bauer, E; Huylmans, AK; Sikosek, T (Jun 2010). "How do new proteins arise?". Current Opinion in Structural Biology. 20 (3): 390–6. doi:10.1016/j.sbi.2010.02.005. PMID 20347587.
Kimura, M (1968). "Evolutionary Rate at the Molecular Level". Nature. 217 (5129): 624–6. Bibcode:1968Natur.217..624K. doi:10.1038/217624a0. PMID 5637732. S2CID 4161261.
King, JL; Jukes, TH (1969). "Non-Darwinian Evolution". Science. 164 (3881): 788–97. Bibcode:1969Sci...164..788L. doi:10.1126/science.164.3881.788. PMID 5767777.
Crick, FH (1968). "The origin of the genetic code". Journal of Molecular Biology. 38 (3): 367–79. doi:10.1016/0022-2836(68)90392-6. PMID 4887876.
Robertson, MP; Joyce, GF (2012). "The origins of the RNA world". Cold Spring Harbor Perspectives in Biology. 4 (5): a003608. doi:10.1101/cshperspect.a003608. PMC 3331698. PMID 20739415.
Smith, Temple F.; Waterman, Michael S. (1981). "Identification of common molecular subsequences". Journal of Molecular Biology. 147 (1): 195–197. doi:10.1016/0022-2836(81)90087-5. PMID 7265238.
McCaskill, John (1990). "The Equilibrium Partition Function and Base Pair Binding Probabilities for RNA Secondary Structure". Biopolymers. 29 (6–7): 1105–19. doi:10.1002/bip.360290621. hdl:11858/00-001M-0000-0013-0DE3-9. PMID 1695107. S2CID 12629688.
Zuker, Michael; Stiegler, Patrick (1981). "Optimal Computer Folding of Large RNA Sequences Using Thermodynamics". Nucleic Acids Research. 9 (1): 133–148. doi:10.1093/nar/9.1.133. PMC 326673. PMID 6163133.
Studnicka, Gary M.; Rahn, Georgia M.; Cummings, Ian W.; Salser, Winston A. (1978-09-01). "Computer method for predicting the secondary structure of single-stranded RNA". Nucleic Acids Research. 5 (9): 3365–3388. doi:10.1093/nar/5.9.3365. ISSN 0305-1048. PMC 342256. PMID 100768.
Schuster, Peter; Fontana, Walter; Stadler, Peter F.; Hofacker, Ivo L. (1994-03-22). "From Sequences to Shapes and Back: A Case Study in RNA Secondary Structures". Proceedings of the Royal Society of London B: Biological Sciences. 255 (1344): 279–284. Bibcode:1994RSPSB.255..279S. doi:10.1098/rspb.1994.0040. ISSN 0962-8452. PMID 7517565. S2CID 12021473.

ncbi.nlm.nih.gov

van Nimwegen, E; Crutchfield, JP; Huynen, M (Aug 17, 1999). "Neutral evolution of mutational robustness". Proceedings of the National Academy of Sciences of the United States of America. 96 (17): 9716–20. arXiv:adap-org/9903006. Bibcode:1999PNAS...96.9716V. doi:10.1073/pnas.96.17.9716. PMC 22276. PMID 10449760.
Meyerguz, L; Kleinberg, J; Elber, R (Jul 10, 2007). "The network of sequence flow between protein structures". Proceedings of the National Academy of Sciences of the United States of America. 104 (28): 11627–32. Bibcode:2007PNAS..10411627M. doi:10.1073/pnas.0701393104. PMC 1913895. PMID 17596339.
Shakhnovich, BE; Deeds, E; Delisi, C; Shakhnovich, E (Mar 2005). "Protein structure and evolutionary history determine sequence space topology". Genome Research. 15 (3): 385–92. arXiv:q-bio/0404040. doi:10.1101/gr.3133605. PMC 551565. PMID 15741509.
Monsellier, E; Chiti, F (Aug 2007). "Prevention of amyloid-like aggregation as a driving force of protein evolution". EMBO Reports. 8 (8): 737–42. doi:10.1038/sj.embor.7401034. PMC 1978086. PMID 17668004.
Richardson, JS; Richardson, DC (Mar 5, 2002). "Natural beta-sheet proteins use negative design to avoid edge-to-edge aggregation". Proceedings of the National Academy of Sciences of the United States of America. 99 (5): 2754–9. Bibcode:2002PNAS...99.2754R. doi:10.1073/pnas.052706099. PMC 122420. PMID 11880627.
Müller, MM; Allison, JR; Hongdilokkul, N; Gaillon, L; Kast, P; van Gunsteren, WF; Marlière, P; Hilvert, D (2013). "Directed evolution of a model primordial enzyme provides insights into the development of the genetic code". PLOS Genetics. 9 (1): e1003187. doi:10.1371/journal.pgen.1003187. PMC 3536711. PMID 23300488.
Firnberg, E; Ostermeier, M (Aug 2013). "The genetic code constrains yet facilitates Darwinian evolution". Nucleic Acids Research. 41 (15): 7420–8. doi:10.1093/nar/gkt536. PMC 3753648. PMID 23754851.
Hietpas, RT; Jensen, JD; Bolon, DN (May 10, 2011). "Experimental illumination of a fitness landscape". Proceedings of the National Academy of Sciences of the United States of America. 108 (19): 7896–901. Bibcode:2011PNAS..108.7896H. doi:10.1073/pnas.1016024108. PMC 3093508. PMID 21464309.
van Nimwegen E.; Crutchfield J. P.; Huynen M. (1999). "Neutral evolution of mutational robustness". PNAS. 96 (17): 9716–9720. arXiv:adap-org/9903006. Bibcode:1999PNAS...96.9716V. doi:10.1073/pnas.96.17.9716. PMC 22276. PMID 10449760.
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Studnicka, Gary M.; Rahn, Georgia M.; Cummings, Ian W.; Salser, Winston A. (1978-09-01). "Computer method for predicting the secondary structure of single-stranded RNA". Nucleic Acids Research. 5 (9): 3365–3388. doi:10.1093/nar/5.9.3365. ISSN 0305-1048. PMC 342256. PMID 100768.
Schuster, Peter; Fontana, Walter; Stadler, Peter F.; Hofacker, Ivo L. (1994-03-22). "From Sequences to Shapes and Back: A Case Study in RNA Secondary Structures". Proceedings of the Royal Society of London B: Biological Sciences. 255 (1344): 279–284. Bibcode:1994RSPSB.255..279S. doi:10.1098/rspb.1994.0040. ISSN 0962-8452. PMID 7517565. S2CID 12021473.