Non-coding DNA (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Non-coding DNA" in English language version.

refsWebsite

Global rank English rank

77nih.gov

4^th place

46doi.org

2^nd place

15semanticscholar.org

11^th place

8^th place

5harvard.edu

18^th place

17^th place

2worldcat.org

5^th place

2handle.net

102^nd place

76^th place

1nytimes.com

7^th place

1arizona.edu

1,592^nd place

1,119^th place

1ensembl.org

1,626^th place

1,007^th place

1unige.ch

6,897^th place

6,705^th place

1archives-ouvertes.fr

1,031^st place

879^th place

archives-ouvertes.fr

hal.archives-ouvertes.fr

Morange, Michel (2014). "Genome as a Multipurpose Structure Built by Evolution" (PDF). Perspectives in Biology and Medicine. 57 (1): 162–171. doi:10.1353/pbm.2014.0008. PMID 25345709. S2CID 27613442.

arizona.edu

news.arizona.edu

Hsu C, and Stolte D (May 13, 2013). "Carnivorous Plant Throws Out 'Junk' DNA" (Press release). Tucson, AZ, USA: University of Arizona. Retrieved May 29, 2022.

doi.org

Kirchberger PC, Schmidt ML, and Ochman H (2020). "The ingenuity of bacterial genomes". Annual Review of Microbiology. 74: 815–834. doi:10.1146/annurev-micro-020518-115822. PMID 32692614. S2CID 220699395.
Piovesan A, Antonaros F, Vitale L, Strippoli P, Pelleri MC, Caracausi M (2019). "Human protein-coding genes and gene feature statistics in 2019". BMC Research Notes. 12 (1): 315. doi:10.1186/s13104-019-4343-8. PMC 6549324. PMID 31164174.
Omenn GS (2021). "Reflections on the HUPO Human Proteome Project, the Flagship Project of the Human Proteome Organization, at 10 Years". Molecular & Cellular Proteomics. 20: 100062. doi:10.1016/j.mcpro.2021.100062. PMC 8058560. PMID 33640492.
Thomas CA (1971). "The genetic organization of chromosomes". Annual Review of Genetics. 5: 237–256. doi:10.1146/annurev.ge.05.120171.001321. PMID 16097657.
Elliott TA, Gregory TR (2015). "What's in a genome? The C-value enigma and the evolution of eukaryotic genome content". Phil. Trans. R. Soc. B. 370 (1678): 20140331. doi:10.1098/rstb.2014.0331. PMC 4571570. PMID 26323762. S2CID 12095046.
Hahn MW, Wray GA (2002). "The g-value paradox". Evolution and Development. 4 (2): 73–75. doi:10.1046/j.1525-142X.2002.01069.x. PMID 12004964. S2CID 2810069.
Gregory TR, Hebert PD (April 1999). "The modulation of DNA content: proximate causes and ultimate consequences". Genome Research. 9 (4): 317–324. doi:10.1101/gr.9.4.317. PMID 10207154. S2CID 16791399.
Aparicio S, Chapman J, Stupka E, Putnam N, Chia JM, Dehal P, Christoffels A, Rash S, Hoon S, Smit A (2002). "Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes". Science. 297 (5585): 1301–1310. Bibcode:2002Sci...297.1301A. doi:10.1126/science.1072104. PMID 12142439. S2CID 10310355.
Ibarra-Laclette E, Lyons E, Hernández-Guzmán G, Pérez-Torres CA, Carretero-Paulet L, Chang TH, Lan T, Welch AJ, Juárez MJ, Simpson J, et al. (2013). "Architecture and evolution of a minute plant genome". Nature. 498 (7452): 94–98. Bibcode:2013Natur.498...94I. doi:10.1038/nature12132. PMC 4972453. PMID 23665961. S2CID 18219754.
Lan T, Renner T, Ibarra-Laclette E, Farr KM, Chang TH, Cervantes-Pérez SA, Zheng C, Sankoff D, Tang H, and Purbojati RW (2017). "Long-read sequencing uncovers the adaptive topography of a carnivorous plant genome". Proceedings of the National Academy of Sciences. 114 (22): E4435 – E4441. Bibcode:2017PNAS..114E4435L. doi:10.1073/pnas.1702072114. PMC 5465930. PMID 28507139.
Cech TR, Steitz JA (2014). "The Noncoding RNA Revolution - Trashing Old Rules to Forge New Ones". Cell. 157 (1): 77–94. doi:10.1016/j.cell.2014.03.008. PMID 24679528. S2CID 14852160.
Rogozin IB, Makarova KS, Natale DA, Spiridonov AN, Tatusov RL, Wolf YI, et al. (October 2002). "Congruent evolution of different classes of non-coding DNA in prokaryotic genomes". Nucleic Acids Research. 30 (19): 4264–4271. doi:10.1093/nar/gkf549. PMC 140549. PMID 12364605.
Bielawski JP, Jones C (2016). "Adaptive Molecular Evolution: Detection Methods". Encyclopedia of Evolutionary Biology. pp. 16–25. doi:10.1016/B978-0-12-800049-6.00171-2. ISBN 978-0-12-800426-5.
Ponting CP, and Haerty W (2022). "Genome-Wide Analysis of Human Long Noncoding RNAs: A Provocative Review". Annual Review of Genomics and Human Genetics. 23: 153–172. doi:10.1146/annurev-genom-112921-123710. hdl:20.500.11820/ede40d70-b99c-42b0-a378-3b9b7b256a1b. PMID 35395170. S2CID 248049706.
Compe E, Egly JM (2021). "The Long Road to Understanding RNAPII Transcription Initiation and Related Syndromes". Annual Review of Biochemistry. 90: 193–219. doi:10.1146/annurev-biochem-090220-112253. PMID 34153211. S2CID 235595550.
Visel A, Rubin EM, Pennacchio LA (September 2009). "Genomic views of distant-acting enhancers". Nature. 461 (7261): 199–205. Bibcode:2009Natur.461..199V. doi:10.1038/nature08451. PMC 2923221. PMID 19741700.
Harrow J, Frankish A, Gonzalez JM, Tapanari E, Diekhans M, Kokocinski F, Aken BL, Barrell D, Zadissa A, Searle S (2012). "GENCODE: the reference human genome annotation for The ENCODE Project". Genome Research. 22 (9): 1760–1774. doi:10.1101/gr.135350.111. PMC 3431492. PMID 22955987.
Leonard AC, Méchali M (2013). "DNA replication origins". Cold Spring Harbor Perspectives in Biology. 5 (10): a010116. doi:10.1101/cshperspect.a010116. PMC 3783049. PMID 23838439.
Urban JM, Foulk MS, Casella C, Gerbi SA (2015). "The hunt for origins of DNA replication in multicellular eukaryotes". F1000Prime Reports. 7: 30. doi:10.12703/P7-30. PMC 4371235. PMID 25926981.
Prioleau M, MacAlpine DM (2016). "DNA replication origins—where do we begin?". Genes & Development. 30 (15): 1683–1697. doi:10.1101/gad.285114.116. PMC 5002974. PMID 27542827.
Romiguier J, Roux C (2017). "Analytical Biases Associated with GC-Content in Molecular Evolution". Frontiers in Genetics. 8: 16. doi:10.3389/fgene.2017.00016. PMC 5309256. PMID 28261263.
Altemose N, Logsdon GA, Bzikadze AV, Sidhwani P, Langley SA, Caldas GV, et al. (2021). "Complete genomic and epigenetic maps of human centromeres". Science. 376 (6588): 56. doi:10.1126/science.abl4178. PMC 9233505. PMID 35357911. S2CID 247853627.
Miga KH (2019). "Centromeric satellite DNAs: hidden sequence variation in the human population". Genes. 10 (5): 353. doi:10.3390/genes10050352. PMC 6562703. PMID 31072070.
Cusanelli E, Chartrand P (May 2014). "Telomeric noncoding RNA: telomeric repeat-containing RNA in telomere biology". Wiley Interdisciplinary Reviews. RNA. 5 (3): 407–419. doi:10.1002/wrna.1220. PMID 24523222. S2CID 36918311.
Mistreli T (2020). "The self-organizing genome: Principles of genome architecture and function". Cell. 183 (1): 28–45. doi:10.1016/j.cell.2020.09.014. PMC 7541718. PMID 32976797.
Xu J, Zhang J (2015). "Are human translated pseudogenes functional?". Molecular Biology and Evolution. 33 (3): 755–760. doi:10.1093/molbev/msv268. PMC 5009996. PMID 26589994.
Wen YZ, Zheng LL, Qu LH, Ayala FJ, Lun ZR (2012). "Pseudogenes are not pseudo any more". RNA Biology. 9 (1): 27–32. doi:10.4161/rna.9.1.18277. PMID 22258143. S2CID 13161678.
Ponicsan SL, Kugel JF, Goodrich JA (April 2010). "Genomic gems: SINE RNAs regulate mRNA production". Current Opinion in Genetics & Development. 20 (2): 149–155. doi:10.1016/j.gde.2010.01.004. PMC 2859989. PMID 20176473.
Häsler J, Samuelsson T, Strub K (July 2007). "Useful 'junk': Alu RNAs in the human transcriptome". Cellular and Molecular Life Sciences (Submitted manuscript). 64 (14): 1793–1800. doi:10.1007/s00018-007-7084-0. PMC 11136058. PMID 17514354. S2CID 5938630.
Walters RD, Kugel JF, Goodrich JA (August 2009). "InvAluable junk: the cellular impact and function of Alu and B2 RNAs". IUBMB Life. 61 (8): 831–837. doi:10.1002/iub.227. PMC 4049031. PMID 19621349.
Nelson PN, Hooley P, Roden D, Davari Ejtehadi H, Rylance P, Warren P, et al. (October 2004). "Human endogenous retroviruses: transposable elements with potential?". Clinical and Experimental Immunology. 138 (1): 1–9. doi:10.1111/j.1365-2249.2004.02592.x. PMC 1809191. PMID 15373898.
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, et al. (February 2001). "Initial sequencing and analysis of the human genome". Nature. 409 (6822): 860–921. Bibcode:2001Natur.409..860L. doi:10.1038/35057062. hdl:2027.42/62798. PMID 11237011.
Piegu B, Guyot R, Picault N, Roulin A, Sanyal A, Saniyal A, et al. (October 2006). "Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice". Genome Research. 16 (10): 1262–1269. doi:10.1101/gr.5290206. PMC 1581435. PMID 16963705.
Hawkins JS, Kim H, Nason JD, Wing RA, Wendel JF (October 2006). "Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium". Genome Research. 16 (10): 1252–1261. doi:10.1101/gr.5282906. PMC 1581434. PMID 16954538.
Gymrek M, Willems T, Guilmatre A, Zeng H, Markus B, Georgiev S, Daly MJ, Price AL, Pritchard JK, Sharp AJ, Erlich Y (2016). "Abundant contribution of short tandem repeats to gene expression variation in humans". Nature Genetics. 48 (1): 22–29. doi:10.1038/ng.3461. PMC 4909355. PMID 26642241.
Kronenberg ZN, Fiddes IT, Gordon D, Murali S, Cantsilieris S, Meyerson OS, Underwood JG, Nelson BJ, Chaisson MJ, Dougherty ML (2018). "High-resolution comparative analysis of great ape genomes". Science. 360 (6393): 1085. doi:10.1126/science.aar6343. PMC 6178954. PMID 29880660.
Gil R, and Latorre A (2012). "Factors behind junk DNA in bacteria". Genes. 3 (4): 634–650. doi:10.3390/genes3040634. PMC 3899985. PMID 24705080.
Brandes, Nadav; Linial, Michal (2016). "Gene overlapping and size constraints in the viral world". Biology Direct. 11 (1): 26. doi:10.1186/s13062-016-0128-3. ISSN 1745-6150. PMC 4875738. PMID 27209091.
Palazzo AF, Gregory TR (May 2014). "The case for junk DNA". PLOS Genetics. 10 (5): e1004351. doi:10.1371/journal.pgen.1004351. PMC 4014423. PMID 24809441.
Morange, Michel (2014). "Genome as a Multipurpose Structure Built by Evolution" (PDF). Perspectives in Biology and Medicine. 57 (1): 162–171. doi:10.1353/pbm.2014.0008. PMID 25345709. S2CID 27613442.
Haerty W, and Ponting CP (2014). "No Gene in the Genome Makes Sense Except in the Light of Evolution". Annual Review of Genomics and Human Genetics. 25: 71–92. doi:10.1146/annurev-genom-090413-025621. PMID 24773316.
Korte A, Farlwo A (2013). "The advantages and limitations of trait analysis with GWAS: a review". Plant Methods. 9: 29. doi:10.1186/1746-4811-9-29. PMC 3750305. PMID 23876160. S2CID 206976469.
Manolio TA (July 2010). "Genomewide association studies and assessment of the risk of disease". The New England Journal of Medicine. 363 (2): 166–76. doi:10.1056/NEJMra0905980. PMID 20647212.
Visscher PV, Wray NR, Zhang Q, Sklar P, McCarthy MI, Brown MA, Yang J (2017). "10 Years of GWAS Discovery: Biology, Function, and Translation". American Journal of Human Genetics. 101 (1): 5–22. doi:10.1016/j.ajhg.2017.06.005. PMC 5501872. PMID 28686856.
Gallagher MD, Chen-Plotkin, AS (2018). "The Post-GWAS Era: From Association to Function". American Journal of Human Genetics. 102 (5): 717–730. doi:10.1016/j.ajhg.2018.04.002. PMC 5986732. PMID 29727686.
Marigorta UM, Rodríguez JA, Gibson G, Navarro A (2018). "Replicability and Prediction: Lessons and Challenges from GWAS". Trends in Genetics. 34 (7): 504–517. doi:10.1016/j.tig.2018.03.005. PMC 6003860. PMID 29716745.

ensembl.org

useast.ensembl.org

"Ensemble Human reference genome GRCh38.p13".

handle.net

hdl.handle.net

Ponting CP, and Haerty W (2022). "Genome-Wide Analysis of Human Long Noncoding RNAs: A Provocative Review". Annual Review of Genomics and Human Genetics. 23: 153–172. doi:10.1146/annurev-genom-112921-123710. hdl:20.500.11820/ede40d70-b99c-42b0-a378-3b9b7b256a1b. PMID 35395170. S2CID 248049706.
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, et al. (February 2001). "Initial sequencing and analysis of the human genome". Nature. 409 (6822): 860–921. Bibcode:2001Natur.409..860L. doi:10.1038/35057062. hdl:2027.42/62798. PMID 11237011.

harvard.edu

ui.adsabs.harvard.edu

Aparicio S, Chapman J, Stupka E, Putnam N, Chia JM, Dehal P, Christoffels A, Rash S, Hoon S, Smit A (2002). "Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes". Science. 297 (5585): 1301–1310. Bibcode:2002Sci...297.1301A. doi:10.1126/science.1072104. PMID 12142439. S2CID 10310355.
Ibarra-Laclette E, Lyons E, Hernández-Guzmán G, Pérez-Torres CA, Carretero-Paulet L, Chang TH, Lan T, Welch AJ, Juárez MJ, Simpson J, et al. (2013). "Architecture and evolution of a minute plant genome". Nature. 498 (7452): 94–98. Bibcode:2013Natur.498...94I. doi:10.1038/nature12132. PMC 4972453. PMID 23665961. S2CID 18219754.
Lan T, Renner T, Ibarra-Laclette E, Farr KM, Chang TH, Cervantes-Pérez SA, Zheng C, Sankoff D, Tang H, and Purbojati RW (2017). "Long-read sequencing uncovers the adaptive topography of a carnivorous plant genome". Proceedings of the National Academy of Sciences. 114 (22): E4435 – E4441. Bibcode:2017PNAS..114E4435L. doi:10.1073/pnas.1702072114. PMC 5465930. PMID 28507139.
Visel A, Rubin EM, Pennacchio LA (September 2009). "Genomic views of distant-acting enhancers". Nature. 461 (7261): 199–205. Bibcode:2009Natur.461..199V. doi:10.1038/nature08451. PMC 2923221. PMID 19741700.
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, et al. (February 2001). "Initial sequencing and analysis of the human genome". Nature. 409 (6822): 860–921. Bibcode:2001Natur.409..860L. doi:10.1038/35057062. hdl:2027.42/62798. PMID 11237011.

nih.gov

pubmed.ncbi.nlm.nih.gov

Kirchberger PC, Schmidt ML, and Ochman H (2020). "The ingenuity of bacterial genomes". Annual Review of Microbiology. 74: 815–834. doi:10.1146/annurev-micro-020518-115822. PMID 32692614. S2CID 220699395.
Piovesan A, Antonaros F, Vitale L, Strippoli P, Pelleri MC, Caracausi M (2019). "Human protein-coding genes and gene feature statistics in 2019". BMC Research Notes. 12 (1): 315. doi:10.1186/s13104-019-4343-8. PMC 6549324. PMID 31164174.
Omenn GS (2021). "Reflections on the HUPO Human Proteome Project, the Flagship Project of the Human Proteome Organization, at 10 Years". Molecular & Cellular Proteomics. 20: 100062. doi:10.1016/j.mcpro.2021.100062. PMC 8058560. PMID 33640492.
Thomas CA (1971). "The genetic organization of chromosomes". Annual Review of Genetics. 5: 237–256. doi:10.1146/annurev.ge.05.120171.001321. PMID 16097657.
Elliott TA, Gregory TR (2015). "What's in a genome? The C-value enigma and the evolution of eukaryotic genome content". Phil. Trans. R. Soc. B. 370 (1678): 20140331. doi:10.1098/rstb.2014.0331. PMC 4571570. PMID 26323762. S2CID 12095046.
Hahn MW, Wray GA (2002). "The g-value paradox". Evolution and Development. 4 (2): 73–75. doi:10.1046/j.1525-142X.2002.01069.x. PMID 12004964. S2CID 2810069.
Gregory TR, Hebert PD (April 1999). "The modulation of DNA content: proximate causes and ultimate consequences". Genome Research. 9 (4): 317–324. doi:10.1101/gr.9.4.317. PMID 10207154. S2CID 16791399.
Aparicio S, Chapman J, Stupka E, Putnam N, Chia JM, Dehal P, Christoffels A, Rash S, Hoon S, Smit A (2002). "Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes". Science. 297 (5585): 1301–1310. Bibcode:2002Sci...297.1301A. doi:10.1126/science.1072104. PMID 12142439. S2CID 10310355.
Ohno S (1972). "So much "junk" DNA in our genome". Brookhaven Symposia in Biology. 23: 366–370. OCLC 101819442. PMID 5065367.
Ibarra-Laclette E, Lyons E, Hernández-Guzmán G, Pérez-Torres CA, Carretero-Paulet L, Chang TH, Lan T, Welch AJ, Juárez MJ, Simpson J, et al. (2013). "Architecture and evolution of a minute plant genome". Nature. 498 (7452): 94–98. Bibcode:2013Natur.498...94I. doi:10.1038/nature12132. PMC 4972453. PMID 23665961. S2CID 18219754.
Lan T, Renner T, Ibarra-Laclette E, Farr KM, Chang TH, Cervantes-Pérez SA, Zheng C, Sankoff D, Tang H, and Purbojati RW (2017). "Long-read sequencing uncovers the adaptive topography of a carnivorous plant genome". Proceedings of the National Academy of Sciences. 114 (22): E4435 – E4441. Bibcode:2017PNAS..114E4435L. doi:10.1073/pnas.1702072114. PMC 5465930. PMID 28507139.
Cech TR, Steitz JA (2014). "The Noncoding RNA Revolution - Trashing Old Rules to Forge New Ones". Cell. 157 (1): 77–94. doi:10.1016/j.cell.2014.03.008. PMID 24679528. S2CID 14852160.
Rogozin IB, Makarova KS, Natale DA, Spiridonov AN, Tatusov RL, Wolf YI, et al. (October 2002). "Congruent evolution of different classes of non-coding DNA in prokaryotic genomes". Nucleic Acids Research. 30 (19): 4264–4271. doi:10.1093/nar/gkf549. PMC 140549. PMID 12364605.
Ponting CP, and Haerty W (2022). "Genome-Wide Analysis of Human Long Noncoding RNAs: A Provocative Review". Annual Review of Genomics and Human Genetics. 23: 153–172. doi:10.1146/annurev-genom-112921-123710. hdl:20.500.11820/ede40d70-b99c-42b0-a378-3b9b7b256a1b. PMID 35395170. S2CID 248049706.
Compe E, Egly JM (2021). "The Long Road to Understanding RNAPII Transcription Initiation and Related Syndromes". Annual Review of Biochemistry. 90: 193–219. doi:10.1146/annurev-biochem-090220-112253. PMID 34153211. S2CID 235595550.
Visel A, Rubin EM, Pennacchio LA (September 2009). "Genomic views of distant-acting enhancers". Nature. 461 (7261): 199–205. Bibcode:2009Natur.461..199V. doi:10.1038/nature08451. PMC 2923221. PMID 19741700.
Harrow J, Frankish A, Gonzalez JM, Tapanari E, Diekhans M, Kokocinski F, Aken BL, Barrell D, Zadissa A, Searle S (2012). "GENCODE: the reference human genome annotation for The ENCODE Project". Genome Research. 22 (9): 1760–1774. doi:10.1101/gr.135350.111. PMC 3431492. PMID 22955987.
Leonard AC, Méchali M (2013). "DNA replication origins". Cold Spring Harbor Perspectives in Biology. 5 (10): a010116. doi:10.1101/cshperspect.a010116. PMC 3783049. PMID 23838439.
Urban JM, Foulk MS, Casella C, Gerbi SA (2015). "The hunt for origins of DNA replication in multicellular eukaryotes". F1000Prime Reports. 7: 30. doi:10.12703/P7-30. PMC 4371235. PMID 25926981.
Prioleau M, MacAlpine DM (2016). "DNA replication origins—where do we begin?". Genes & Development. 30 (15): 1683–1697. doi:10.1101/gad.285114.116. PMC 5002974. PMID 27542827.
Romiguier J, Roux C (2017). "Analytical Biases Associated with GC-Content in Molecular Evolution". Frontiers in Genetics. 8: 16. doi:10.3389/fgene.2017.00016. PMC 5309256. PMID 28261263.
Altemose N, Logsdon GA, Bzikadze AV, Sidhwani P, Langley SA, Caldas GV, et al. (2021). "Complete genomic and epigenetic maps of human centromeres". Science. 376 (6588): 56. doi:10.1126/science.abl4178. PMC 9233505. PMID 35357911. S2CID 247853627.
Miga KH (2019). "Centromeric satellite DNAs: hidden sequence variation in the human population". Genes. 10 (5): 353. doi:10.3390/genes10050352. PMC 6562703. PMID 31072070.
Cusanelli E, Chartrand P (May 2014). "Telomeric noncoding RNA: telomeric repeat-containing RNA in telomere biology". Wiley Interdisciplinary Reviews. RNA. 5 (3): 407–419. doi:10.1002/wrna.1220. PMID 24523222. S2CID 36918311.
Mistreli T (2020). "The self-organizing genome: Principles of genome architecture and function". Cell. 183 (1): 28–45. doi:10.1016/j.cell.2020.09.014. PMC 7541718. PMID 32976797.
Xu J, Zhang J (2015). "Are human translated pseudogenes functional?". Molecular Biology and Evolution. 33 (3): 755–760. doi:10.1093/molbev/msv268. PMC 5009996. PMID 26589994.
Wen YZ, Zheng LL, Qu LH, Ayala FJ, Lun ZR (2012). "Pseudogenes are not pseudo any more". RNA Biology. 9 (1): 27–32. doi:10.4161/rna.9.1.18277. PMID 22258143. S2CID 13161678.
Ponicsan SL, Kugel JF, Goodrich JA (April 2010). "Genomic gems: SINE RNAs regulate mRNA production". Current Opinion in Genetics & Development. 20 (2): 149–155. doi:10.1016/j.gde.2010.01.004. PMC 2859989. PMID 20176473.
Häsler J, Samuelsson T, Strub K (July 2007). "Useful 'junk': Alu RNAs in the human transcriptome". Cellular and Molecular Life Sciences (Submitted manuscript). 64 (14): 1793–1800. doi:10.1007/s00018-007-7084-0. PMC 11136058. PMID 17514354. S2CID 5938630.
Walters RD, Kugel JF, Goodrich JA (August 2009). "InvAluable junk: the cellular impact and function of Alu and B2 RNAs". IUBMB Life. 61 (8): 831–837. doi:10.1002/iub.227. PMC 4049031. PMID 19621349.
Nelson PN, Hooley P, Roden D, Davari Ejtehadi H, Rylance P, Warren P, et al. (October 2004). "Human endogenous retroviruses: transposable elements with potential?". Clinical and Experimental Immunology. 138 (1): 1–9. doi:10.1111/j.1365-2249.2004.02592.x. PMC 1809191. PMID 15373898.
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, et al. (February 2001). "Initial sequencing and analysis of the human genome". Nature. 409 (6822): 860–921. Bibcode:2001Natur.409..860L. doi:10.1038/35057062. hdl:2027.42/62798. PMID 11237011.
Piegu B, Guyot R, Picault N, Roulin A, Sanyal A, Saniyal A, et al. (October 2006). "Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice". Genome Research. 16 (10): 1262–1269. doi:10.1101/gr.5290206. PMC 1581435. PMID 16963705.
Hawkins JS, Kim H, Nason JD, Wing RA, Wendel JF (October 2006). "Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium". Genome Research. 16 (10): 1252–1261. doi:10.1101/gr.5282906. PMC 1581434. PMID 16954538.
Gymrek M, Willems T, Guilmatre A, Zeng H, Markus B, Georgiev S, Daly MJ, Price AL, Pritchard JK, Sharp AJ, Erlich Y (2016). "Abundant contribution of short tandem repeats to gene expression variation in humans". Nature Genetics. 48 (1): 22–29. doi:10.1038/ng.3461. PMC 4909355. PMID 26642241.
Kronenberg ZN, Fiddes IT, Gordon D, Murali S, Cantsilieris S, Meyerson OS, Underwood JG, Nelson BJ, Chaisson MJ, Dougherty ML (2018). "High-resolution comparative analysis of great ape genomes". Science. 360 (6393): 1085. doi:10.1126/science.aar6343. PMC 6178954. PMID 29880660.
Gil R, and Latorre A (2012). "Factors behind junk DNA in bacteria". Genes. 3 (4): 634–650. doi:10.3390/genes3040634. PMC 3899985. PMID 24705080.
Brandes, Nadav; Linial, Michal (2016). "Gene overlapping and size constraints in the viral world". Biology Direct. 11 (1): 26. doi:10.1186/s13062-016-0128-3. ISSN 1745-6150. PMC 4875738. PMID 27209091.
Palazzo AF, Gregory TR (May 2014). "The case for junk DNA". PLOS Genetics. 10 (5): e1004351. doi:10.1371/journal.pgen.1004351. PMC 4014423. PMID 24809441.
Morange, Michel (2014). "Genome as a Multipurpose Structure Built by Evolution" (PDF). Perspectives in Biology and Medicine. 57 (1): 162–171. doi:10.1353/pbm.2014.0008. PMID 25345709. S2CID 27613442.
Haerty W, and Ponting CP (2014). "No Gene in the Genome Makes Sense Except in the Light of Evolution". Annual Review of Genomics and Human Genetics. 25: 71–92. doi:10.1146/annurev-genom-090413-025621. PMID 24773316.
Korte A, Farlwo A (2013). "The advantages and limitations of trait analysis with GWAS: a review". Plant Methods. 9: 29. doi:10.1186/1746-4811-9-29. PMC 3750305. PMID 23876160. S2CID 206976469.
Manolio TA (July 2010). "Genomewide association studies and assessment of the risk of disease". The New England Journal of Medicine. 363 (2): 166–76. doi:10.1056/NEJMra0905980. PMID 20647212.
Visscher PV, Wray NR, Zhang Q, Sklar P, McCarthy MI, Brown MA, Yang J (2017). "10 Years of GWAS Discovery: Biology, Function, and Translation". American Journal of Human Genetics. 101 (1): 5–22. doi:10.1016/j.ajhg.2017.06.005. PMC 5501872. PMID 28686856.
Gallagher MD, Chen-Plotkin, AS (2018). "The Post-GWAS Era: From Association to Function". American Journal of Human Genetics. 102 (5): 717–730. doi:10.1016/j.ajhg.2018.04.002. PMC 5986732. PMID 29727686.
Marigorta UM, Rodríguez JA, Gibson G, Navarro A (2018). "Replicability and Prediction: Lessons and Challenges from GWAS". Trends in Genetics. 34 (7): 504–517. doi:10.1016/j.tig.2018.03.005. PMC 6003860. PMID 29716745.

ncbi.nlm.nih.gov

Piovesan A, Antonaros F, Vitale L, Strippoli P, Pelleri MC, Caracausi M (2019). "Human protein-coding genes and gene feature statistics in 2019". BMC Research Notes. 12 (1): 315. doi:10.1186/s13104-019-4343-8. PMC 6549324. PMID 31164174.
Omenn GS (2021). "Reflections on the HUPO Human Proteome Project, the Flagship Project of the Human Proteome Organization, at 10 Years". Molecular & Cellular Proteomics. 20: 100062. doi:10.1016/j.mcpro.2021.100062. PMC 8058560. PMID 33640492.
Elliott TA, Gregory TR (2015). "What's in a genome? The C-value enigma and the evolution of eukaryotic genome content". Phil. Trans. R. Soc. B. 370 (1678): 20140331. doi:10.1098/rstb.2014.0331. PMC 4571570. PMID 26323762. S2CID 12095046.
Ibarra-Laclette E, Lyons E, Hernández-Guzmán G, Pérez-Torres CA, Carretero-Paulet L, Chang TH, Lan T, Welch AJ, Juárez MJ, Simpson J, et al. (2013). "Architecture and evolution of a minute plant genome". Nature. 498 (7452): 94–98. Bibcode:2013Natur.498...94I. doi:10.1038/nature12132. PMC 4972453. PMID 23665961. S2CID 18219754.
Lan T, Renner T, Ibarra-Laclette E, Farr KM, Chang TH, Cervantes-Pérez SA, Zheng C, Sankoff D, Tang H, and Purbojati RW (2017). "Long-read sequencing uncovers the adaptive topography of a carnivorous plant genome". Proceedings of the National Academy of Sciences. 114 (22): E4435 – E4441. Bibcode:2017PNAS..114E4435L. doi:10.1073/pnas.1702072114. PMC 5465930. PMID 28507139.
Rogozin IB, Makarova KS, Natale DA, Spiridonov AN, Tatusov RL, Wolf YI, et al. (October 2002). "Congruent evolution of different classes of non-coding DNA in prokaryotic genomes". Nucleic Acids Research. 30 (19): 4264–4271. doi:10.1093/nar/gkf549. PMC 140549. PMID 12364605.
Visel A, Rubin EM, Pennacchio LA (September 2009). "Genomic views of distant-acting enhancers". Nature. 461 (7261): 199–205. Bibcode:2009Natur.461..199V. doi:10.1038/nature08451. PMC 2923221. PMID 19741700.
Harrow J, Frankish A, Gonzalez JM, Tapanari E, Diekhans M, Kokocinski F, Aken BL, Barrell D, Zadissa A, Searle S (2012). "GENCODE: the reference human genome annotation for The ENCODE Project". Genome Research. 22 (9): 1760–1774. doi:10.1101/gr.135350.111. PMC 3431492. PMID 22955987.
Leonard AC, Méchali M (2013). "DNA replication origins". Cold Spring Harbor Perspectives in Biology. 5 (10): a010116. doi:10.1101/cshperspect.a010116. PMC 3783049. PMID 23838439.
Urban JM, Foulk MS, Casella C, Gerbi SA (2015). "The hunt for origins of DNA replication in multicellular eukaryotes". F1000Prime Reports. 7: 30. doi:10.12703/P7-30. PMC 4371235. PMID 25926981.
Prioleau M, MacAlpine DM (2016). "DNA replication origins—where do we begin?". Genes & Development. 30 (15): 1683–1697. doi:10.1101/gad.285114.116. PMC 5002974. PMID 27542827.
Romiguier J, Roux C (2017). "Analytical Biases Associated with GC-Content in Molecular Evolution". Frontiers in Genetics. 8: 16. doi:10.3389/fgene.2017.00016. PMC 5309256. PMID 28261263.
Altemose N, Logsdon GA, Bzikadze AV, Sidhwani P, Langley SA, Caldas GV, et al. (2021). "Complete genomic and epigenetic maps of human centromeres". Science. 376 (6588): 56. doi:10.1126/science.abl4178. PMC 9233505. PMID 35357911. S2CID 247853627.
Miga KH (2019). "Centromeric satellite DNAs: hidden sequence variation in the human population". Genes. 10 (5): 353. doi:10.3390/genes10050352. PMC 6562703. PMID 31072070.
Mistreli T (2020). "The self-organizing genome: Principles of genome architecture and function". Cell. 183 (1): 28–45. doi:10.1016/j.cell.2020.09.014. PMC 7541718. PMID 32976797.
Xu J, Zhang J (2015). "Are human translated pseudogenes functional?". Molecular Biology and Evolution. 33 (3): 755–760. doi:10.1093/molbev/msv268. PMC 5009996. PMID 26589994.
Ponicsan SL, Kugel JF, Goodrich JA (April 2010). "Genomic gems: SINE RNAs regulate mRNA production". Current Opinion in Genetics & Development. 20 (2): 149–155. doi:10.1016/j.gde.2010.01.004. PMC 2859989. PMID 20176473.
Häsler J, Samuelsson T, Strub K (July 2007). "Useful 'junk': Alu RNAs in the human transcriptome". Cellular and Molecular Life Sciences (Submitted manuscript). 64 (14): 1793–1800. doi:10.1007/s00018-007-7084-0. PMC 11136058. PMID 17514354. S2CID 5938630.
Walters RD, Kugel JF, Goodrich JA (August 2009). "InvAluable junk: the cellular impact and function of Alu and B2 RNAs". IUBMB Life. 61 (8): 831–837. doi:10.1002/iub.227. PMC 4049031. PMID 19621349.
Nelson PN, Hooley P, Roden D, Davari Ejtehadi H, Rylance P, Warren P, et al. (October 2004). "Human endogenous retroviruses: transposable elements with potential?". Clinical and Experimental Immunology. 138 (1): 1–9. doi:10.1111/j.1365-2249.2004.02592.x. PMC 1809191. PMID 15373898.
Piegu B, Guyot R, Picault N, Roulin A, Sanyal A, Saniyal A, et al. (October 2006). "Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice". Genome Research. 16 (10): 1262–1269. doi:10.1101/gr.5290206. PMC 1581435. PMID 16963705.
Hawkins JS, Kim H, Nason JD, Wing RA, Wendel JF (October 2006). "Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium". Genome Research. 16 (10): 1252–1261. doi:10.1101/gr.5282906. PMC 1581434. PMID 16954538.
Gymrek M, Willems T, Guilmatre A, Zeng H, Markus B, Georgiev S, Daly MJ, Price AL, Pritchard JK, Sharp AJ, Erlich Y (2016). "Abundant contribution of short tandem repeats to gene expression variation in humans". Nature Genetics. 48 (1): 22–29. doi:10.1038/ng.3461. PMC 4909355. PMID 26642241.
Kronenberg ZN, Fiddes IT, Gordon D, Murali S, Cantsilieris S, Meyerson OS, Underwood JG, Nelson BJ, Chaisson MJ, Dougherty ML (2018). "High-resolution comparative analysis of great ape genomes". Science. 360 (6393): 1085. doi:10.1126/science.aar6343. PMC 6178954. PMID 29880660.
Gil R, and Latorre A (2012). "Factors behind junk DNA in bacteria". Genes. 3 (4): 634–650. doi:10.3390/genes3040634. PMC 3899985. PMID 24705080.
Brandes, Nadav; Linial, Michal (2016). "Gene overlapping and size constraints in the viral world". Biology Direct. 11 (1): 26. doi:10.1186/s13062-016-0128-3. ISSN 1745-6150. PMC 4875738. PMID 27209091.
Palazzo AF, Gregory TR (May 2014). "The case for junk DNA". PLOS Genetics. 10 (5): e1004351. doi:10.1371/journal.pgen.1004351. PMC 4014423. PMID 24809441.
Korte A, Farlwo A (2013). "The advantages and limitations of trait analysis with GWAS: a review". Plant Methods. 9: 29. doi:10.1186/1746-4811-9-29. PMC 3750305. PMID 23876160. S2CID 206976469.
Visscher PV, Wray NR, Zhang Q, Sklar P, McCarthy MI, Brown MA, Yang J (2017). "10 Years of GWAS Discovery: Biology, Function, and Translation". American Journal of Human Genetics. 101 (1): 5–22. doi:10.1016/j.ajhg.2017.06.005. PMC 5501872. PMID 28686856.
Gallagher MD, Chen-Plotkin, AS (2018). "The Post-GWAS Era: From Association to Function". American Journal of Human Genetics. 102 (5): 717–730. doi:10.1016/j.ajhg.2018.04.002. PMC 5986732. PMID 29727686.
Marigorta UM, Rodríguez JA, Gibson G, Navarro A (2018). "Replicability and Prediction: Lessons and Challenges from GWAS". Trends in Genetics. 34 (7): 504–517. doi:10.1016/j.tig.2018.03.005. PMC 6003860. PMID 29716745.

nytimes.com

Klein J (19 May 2017). "Genetic Tidying Up Made Humped Bladderworts Into Carnivorous Plants". New York Times. Retrieved May 30, 2022.

semanticscholar.org

api.semanticscholar.org

Kirchberger PC, Schmidt ML, and Ochman H (2020). "The ingenuity of bacterial genomes". Annual Review of Microbiology. 74: 815–834. doi:10.1146/annurev-micro-020518-115822. PMID 32692614. S2CID 220699395.
Elliott TA, Gregory TR (2015). "What's in a genome? The C-value enigma and the evolution of eukaryotic genome content". Phil. Trans. R. Soc. B. 370 (1678): 20140331. doi:10.1098/rstb.2014.0331. PMC 4571570. PMID 26323762. S2CID 12095046.
Hahn MW, Wray GA (2002). "The g-value paradox". Evolution and Development. 4 (2): 73–75. doi:10.1046/j.1525-142X.2002.01069.x. PMID 12004964. S2CID 2810069.
Gregory TR, Hebert PD (April 1999). "The modulation of DNA content: proximate causes and ultimate consequences". Genome Research. 9 (4): 317–324. doi:10.1101/gr.9.4.317. PMID 10207154. S2CID 16791399.
Aparicio S, Chapman J, Stupka E, Putnam N, Chia JM, Dehal P, Christoffels A, Rash S, Hoon S, Smit A (2002). "Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes". Science. 297 (5585): 1301–1310. Bibcode:2002Sci...297.1301A. doi:10.1126/science.1072104. PMID 12142439. S2CID 10310355.
Ibarra-Laclette E, Lyons E, Hernández-Guzmán G, Pérez-Torres CA, Carretero-Paulet L, Chang TH, Lan T, Welch AJ, Juárez MJ, Simpson J, et al. (2013). "Architecture and evolution of a minute plant genome". Nature. 498 (7452): 94–98. Bibcode:2013Natur.498...94I. doi:10.1038/nature12132. PMC 4972453. PMID 23665961. S2CID 18219754.
Cech TR, Steitz JA (2014). "The Noncoding RNA Revolution - Trashing Old Rules to Forge New Ones". Cell. 157 (1): 77–94. doi:10.1016/j.cell.2014.03.008. PMID 24679528. S2CID 14852160.
Ponting CP, and Haerty W (2022). "Genome-Wide Analysis of Human Long Noncoding RNAs: A Provocative Review". Annual Review of Genomics and Human Genetics. 23: 153–172. doi:10.1146/annurev-genom-112921-123710. hdl:20.500.11820/ede40d70-b99c-42b0-a378-3b9b7b256a1b. PMID 35395170. S2CID 248049706.
Compe E, Egly JM (2021). "The Long Road to Understanding RNAPII Transcription Initiation and Related Syndromes". Annual Review of Biochemistry. 90: 193–219. doi:10.1146/annurev-biochem-090220-112253. PMID 34153211. S2CID 235595550.
Altemose N, Logsdon GA, Bzikadze AV, Sidhwani P, Langley SA, Caldas GV, et al. (2021). "Complete genomic and epigenetic maps of human centromeres". Science. 376 (6588): 56. doi:10.1126/science.abl4178. PMC 9233505. PMID 35357911. S2CID 247853627.
Cusanelli E, Chartrand P (May 2014). "Telomeric noncoding RNA: telomeric repeat-containing RNA in telomere biology". Wiley Interdisciplinary Reviews. RNA. 5 (3): 407–419. doi:10.1002/wrna.1220. PMID 24523222. S2CID 36918311.
Wen YZ, Zheng LL, Qu LH, Ayala FJ, Lun ZR (2012). "Pseudogenes are not pseudo any more". RNA Biology. 9 (1): 27–32. doi:10.4161/rna.9.1.18277. PMID 22258143. S2CID 13161678.
Häsler J, Samuelsson T, Strub K (July 2007). "Useful 'junk': Alu RNAs in the human transcriptome". Cellular and Molecular Life Sciences (Submitted manuscript). 64 (14): 1793–1800. doi:10.1007/s00018-007-7084-0. PMC 11136058. PMID 17514354. S2CID 5938630.
Morange, Michel (2014). "Genome as a Multipurpose Structure Built by Evolution" (PDF). Perspectives in Biology and Medicine. 57 (1): 162–171. doi:10.1353/pbm.2014.0008. PMID 25345709. S2CID 27613442.
Korte A, Farlwo A (2013). "The advantages and limitations of trait analysis with GWAS: a review". Plant Methods. 9: 29. doi:10.1186/1746-4811-9-29. PMC 3750305. PMID 23876160. S2CID 206976469.

unige.ch

archive-ouverte.unige.ch

Häsler J, Samuelsson T, Strub K (July 2007). "Useful 'junk': Alu RNAs in the human transcriptome". Cellular and Molecular Life Sciences (Submitted manuscript). 64 (14): 1793–1800. doi:10.1007/s00018-007-7084-0. PMC 11136058. PMID 17514354. S2CID 5938630.

worldcat.org

search.worldcat.org

Ohno S (1972). "So much "junk" DNA in our genome". Brookhaven Symposia in Biology. 23: 366–370. OCLC 101819442. PMID 5065367.
Brandes, Nadav; Linial, Michal (2016). "Gene overlapping and size constraints in the viral world". Biology Direct. 11 (1): 26. doi:10.1186/s13062-016-0128-3. ISSN 1745-6150. PMC 4875738. PMID 27209091.