Nucleic acid design (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Nucleic acid design" in English language version.

refsWebsite

Global rank English rank

20nih.gov

4^th place

15doi.org

2^nd place

4harvard.edu

18^th place

17^th place

3worldcat.org

5^th place

2semanticscholar.org

11^th place

8^th place

1psu.edu

207^th place

136^th place

1caltech.edu

887^th place

714^th place

1nanoengineer-1.net

low place

caltech.edu

authors.library.caltech.edu

Zadeh, Joseph N.; Wolfe, Brian R.; Pierce, Niles A. (2011). "Nucleic acid sequence design via efficient ensemble defect optimization" (PDF). Journal of Computational Chemistry. 32 (3): 439–452. doi:10.1002/jcc.21633. PMID 20717905. S2CID 1803200.

doi.org

Mao, Chengde (December 2004). "The Emergence of Complexity: Lessons from DNA". PLOS Biology. 2 (12): 2036–2038. doi:10.1371/journal.pbio.0020431. ISSN 1544-9173. PMC 535573. PMID 15597116.
Dirks, Robert M.; Lin, Milo; Winfree, Erik; Pierce, Niles A. (2004). "Paradigms for computational nucleic acid design". Nucleic Acids Research. 32 (4): 1392–1403. doi:10.1093/nar/gkh291. PMC 390280. PMID 14990744.
Seeman, N (1982). "Nucleic acid junctions and lattices". Journal of Theoretical Biology. 99 (2): 237–47. Bibcode:1982JThBi..99..237S. doi:10.1016/0022-5193(82)90002-9. PMID 6188926.
Sherman, W; Seeman, N (2006). "Design of Minimally Strained Nucleic Acid Nanotubes". Biophysical Journal. 90 (12): 4546–57. Bibcode:2006BpJ....90.4546S. doi:10.1529/biophysj.105.080390. PMC 1471877. PMID 16581842.
Brenneman, Arwen; Condon, Anne (2002). "Strand design for biomolecular computation". Theoretical Computer Science. 287: 39–58. doi:10.1016/S0304-3975(02)00135-4.
Dirks, Robert M.; Bois, Justin S.; Schaeffer, Joseph M.; Winfree, Erik; Pierce, Niles A. (2007). "Thermodynamic Analysis of Interacting Nucleic Acid Strands". SIAM Review. 49 (1): 65–88. Bibcode:2007SIAMR..49...65D. CiteSeerX 10.1.1.523.4764. doi:10.1137/060651100.
Zadeh, Joseph N.; Wolfe, Brian R.; Pierce, Niles A. (2011). "Nucleic acid sequence design via efficient ensemble defect optimization" (PDF). Journal of Computational Chemistry. 32 (3): 439–452. doi:10.1002/jcc.21633. PMID 20717905. S2CID 1803200.
Zuker, M. (2003). "Mfold web server for nucleic acid folding and hybridization prediction". Nucleic Acids Research. 31 (13): 3406–15. doi:10.1093/nar/gkg595. PMC 169194. PMID 12824337.
Gruber AR, Lorenz R, Bernhart SH, Neuböck R, Hofacker IL (2008). "The Vienna RNA websuite". Nucleic Acids Res. 36 (Web Server issue): W70–4. doi:10.1093/nar/gkn188. PMC 2447809. PMID 18424795.
Goodman, R.P.; Schaap, I.A.T.; Tardin, C.F.; Erben, C.M.; Berry, R.M.; Schmidt, C.F.; Turberfield, A.J. (9 December 2005). "Rapid chiral assembly of rigid DNA building blocks for molecular nanofabrication". Science. 310 (5754): 1661–1665. Bibcode:2005Sci...310.1661G. doi:10.1126/science.1120367. ISSN 0036-8075. PMID 16339440. S2CID 13678773.
Birac, Jeffrey J.; Sherman, William B.; Kopatsch, Jens; Constantinou, Pamela E.; Seeman, Nadrian C. (2006). "Architecture with GIDEON, a program for design in structural DNA nanotechnology". Journal of Molecular Graphics and Modelling. 25 (4): 470–80. doi:10.1016/j.jmgm.2006.03.005. PMC 3465968. PMID 16630733.
Williams, Sean; Lund, Kyle; Lin, Chenxiang; Wonka, Peter; Lindsay, Stuart; Yan, Hao (2009). "Tiamat: A Three-Dimensional Editing Tool for Complex DNA Structures". DNA Computing. Lecture Notes in Computer Science. Vol. 5347. Springer Berlin / Heidelberg. pp. 90–101. doi:10.1007/978-3-642-03076-5_8. ISBN 978-3-642-03075-8. ISSN 0302-9743.
Zhu, J.; Wei, B.; Yuan, Y.; Mi, Y. (2009). "UNIQUIMER 3D, a software system for structural DNA nanotechnology design, analysis and evaluation". Nucleic Acids Research. 37 (7): 2164–75. doi:10.1093/nar/gkp005. PMC 2673411. PMID 19228709.
Douglas, S. M.; Marblestone, A. H.; Teerapittayanon, S.; Vazquez, A.; Church, G. M.; Shih, W. M. (2009). "Rapid prototyping of 3D DNA-origami shapes with caDNAno". Nucleic Acids Research. 37 (15): 5001–6. doi:10.1093/nar/gkp436. PMC 2731887. PMID 19531737.
Andersen, Ebbe S.; Dong, Mingdong; Nielsen, Morten M.; Jahn, Kasper; Lind-Thomsen, Allan; Mamdouh, Wael; Gothelf, Kurt V.; Besenbacher, Flemming; Kjems, JøRgen (2008). "DNA Origami Design of Dolphin-Shaped Structures with Flexible Tails". ACS Nano. 2 (6): 1213–8. doi:10.1021/nn800215j. PMID 19206339.

harvard.edu

ui.adsabs.harvard.edu

Seeman, N (1982). "Nucleic acid junctions and lattices". Journal of Theoretical Biology. 99 (2): 237–47. Bibcode:1982JThBi..99..237S. doi:10.1016/0022-5193(82)90002-9. PMID 6188926.
Sherman, W; Seeman, N (2006). "Design of Minimally Strained Nucleic Acid Nanotubes". Biophysical Journal. 90 (12): 4546–57. Bibcode:2006BpJ....90.4546S. doi:10.1529/biophysj.105.080390. PMC 1471877. PMID 16581842.
Dirks, Robert M.; Bois, Justin S.; Schaeffer, Joseph M.; Winfree, Erik; Pierce, Niles A. (2007). "Thermodynamic Analysis of Interacting Nucleic Acid Strands". SIAM Review. 49 (1): 65–88. Bibcode:2007SIAMR..49...65D. CiteSeerX 10.1.1.523.4764. doi:10.1137/060651100.
Goodman, R.P.; Schaap, I.A.T.; Tardin, C.F.; Erben, C.M.; Berry, R.M.; Schmidt, C.F.; Turberfield, A.J. (9 December 2005). "Rapid chiral assembly of rigid DNA building blocks for molecular nanofabrication". Science. 310 (5754): 1661–1665. Bibcode:2005Sci...310.1661G. doi:10.1126/science.1120367. ISSN 0036-8075. PMID 16339440. S2CID 13678773.

nanoengineer-1.net

"PAM3 and PAM5 Model Descriptions". Nanoengineer-1 documentation wiki. Nanorex. Retrieved 2010-04-15.

nih.gov

pubmed.ncbi.nlm.nih.gov

Mao, Chengde (December 2004). "The Emergence of Complexity: Lessons from DNA". PLOS Biology. 2 (12): 2036–2038. doi:10.1371/journal.pbio.0020431. ISSN 1544-9173. PMC 535573. PMID 15597116.
Dirks, Robert M.; Lin, Milo; Winfree, Erik; Pierce, Niles A. (2004). "Paradigms for computational nucleic acid design". Nucleic Acids Research. 32 (4): 1392–1403. doi:10.1093/nar/gkh291. PMC 390280. PMID 14990744.
Seeman, N (1982). "Nucleic acid junctions and lattices". Journal of Theoretical Biology. 99 (2): 237–47. Bibcode:1982JThBi..99..237S. doi:10.1016/0022-5193(82)90002-9. PMID 6188926.
Sherman, W; Seeman, N (2006). "Design of Minimally Strained Nucleic Acid Nanotubes". Biophysical Journal. 90 (12): 4546–57. Bibcode:2006BpJ....90.4546S. doi:10.1529/biophysj.105.080390. PMC 1471877. PMID 16581842.
Zadeh, Joseph N.; Wolfe, Brian R.; Pierce, Niles A. (2011). "Nucleic acid sequence design via efficient ensemble defect optimization" (PDF). Journal of Computational Chemistry. 32 (3): 439–452. doi:10.1002/jcc.21633. PMID 20717905. S2CID 1803200.
Zuker, M. (2003). "Mfold web server for nucleic acid folding and hybridization prediction". Nucleic Acids Research. 31 (13): 3406–15. doi:10.1093/nar/gkg595. PMC 169194. PMID 12824337.
Gruber AR, Lorenz R, Bernhart SH, Neuböck R, Hofacker IL (2008). "The Vienna RNA websuite". Nucleic Acids Res. 36 (Web Server issue): W70–4. doi:10.1093/nar/gkn188. PMC 2447809. PMID 18424795.
Goodman, R.P.; Schaap, I.A.T.; Tardin, C.F.; Erben, C.M.; Berry, R.M.; Schmidt, C.F.; Turberfield, A.J. (9 December 2005). "Rapid chiral assembly of rigid DNA building blocks for molecular nanofabrication". Science. 310 (5754): 1661–1665. Bibcode:2005Sci...310.1661G. doi:10.1126/science.1120367. ISSN 0036-8075. PMID 16339440. S2CID 13678773.
Birac, Jeffrey J.; Sherman, William B.; Kopatsch, Jens; Constantinou, Pamela E.; Seeman, Nadrian C. (2006). "Architecture with GIDEON, a program for design in structural DNA nanotechnology". Journal of Molecular Graphics and Modelling. 25 (4): 470–80. doi:10.1016/j.jmgm.2006.03.005. PMC 3465968. PMID 16630733.
Zhu, J.; Wei, B.; Yuan, Y.; Mi, Y. (2009). "UNIQUIMER 3D, a software system for structural DNA nanotechnology design, analysis and evaluation". Nucleic Acids Research. 37 (7): 2164–75. doi:10.1093/nar/gkp005. PMC 2673411. PMID 19228709.
Douglas, S. M.; Marblestone, A. H.; Teerapittayanon, S.; Vazquez, A.; Church, G. M.; Shih, W. M. (2009). "Rapid prototyping of 3D DNA-origami shapes with caDNAno". Nucleic Acids Research. 37 (15): 5001–6. doi:10.1093/nar/gkp436. PMC 2731887. PMID 19531737.
Andersen, Ebbe S.; Dong, Mingdong; Nielsen, Morten M.; Jahn, Kasper; Lind-Thomsen, Allan; Mamdouh, Wael; Gothelf, Kurt V.; Besenbacher, Flemming; Kjems, JøRgen (2008). "DNA Origami Design of Dolphin-Shaped Structures with Flexible Tails". ACS Nano. 2 (6): 1213–8. doi:10.1021/nn800215j. PMID 19206339.

ncbi.nlm.nih.gov

Mao, Chengde (December 2004). "The Emergence of Complexity: Lessons from DNA". PLOS Biology. 2 (12): 2036–2038. doi:10.1371/journal.pbio.0020431. ISSN 1544-9173. PMC 535573. PMID 15597116.
Dirks, Robert M.; Lin, Milo; Winfree, Erik; Pierce, Niles A. (2004). "Paradigms for computational nucleic acid design". Nucleic Acids Research. 32 (4): 1392–1403. doi:10.1093/nar/gkh291. PMC 390280. PMID 14990744.
Sherman, W; Seeman, N (2006). "Design of Minimally Strained Nucleic Acid Nanotubes". Biophysical Journal. 90 (12): 4546–57. Bibcode:2006BpJ....90.4546S. doi:10.1529/biophysj.105.080390. PMC 1471877. PMID 16581842.
Zuker, M. (2003). "Mfold web server for nucleic acid folding and hybridization prediction". Nucleic Acids Research. 31 (13): 3406–15. doi:10.1093/nar/gkg595. PMC 169194. PMID 12824337.
Gruber AR, Lorenz R, Bernhart SH, Neuböck R, Hofacker IL (2008). "The Vienna RNA websuite". Nucleic Acids Res. 36 (Web Server issue): W70–4. doi:10.1093/nar/gkn188. PMC 2447809. PMID 18424795.
Birac, Jeffrey J.; Sherman, William B.; Kopatsch, Jens; Constantinou, Pamela E.; Seeman, Nadrian C. (2006). "Architecture with GIDEON, a program for design in structural DNA nanotechnology". Journal of Molecular Graphics and Modelling. 25 (4): 470–80. doi:10.1016/j.jmgm.2006.03.005. PMC 3465968. PMID 16630733.
Zhu, J.; Wei, B.; Yuan, Y.; Mi, Y. (2009). "UNIQUIMER 3D, a software system for structural DNA nanotechnology design, analysis and evaluation". Nucleic Acids Research. 37 (7): 2164–75. doi:10.1093/nar/gkp005. PMC 2673411. PMID 19228709.
Douglas, S. M.; Marblestone, A. H.; Teerapittayanon, S.; Vazquez, A.; Church, G. M.; Shih, W. M. (2009). "Rapid prototyping of 3D DNA-origami shapes with caDNAno". Nucleic Acids Research. 37 (15): 5001–6. doi:10.1093/nar/gkp436. PMC 2731887. PMID 19531737.

psu.edu

citeseerx.ist.psu.edu

Dirks, Robert M.; Bois, Justin S.; Schaeffer, Joseph M.; Winfree, Erik; Pierce, Niles A. (2007). "Thermodynamic Analysis of Interacting Nucleic Acid Strands". SIAM Review. 49 (1): 65–88. Bibcode:2007SIAMR..49...65D. CiteSeerX 10.1.1.523.4764. doi:10.1137/060651100.

semanticscholar.org

api.semanticscholar.org

Zadeh, Joseph N.; Wolfe, Brian R.; Pierce, Niles A. (2011). "Nucleic acid sequence design via efficient ensemble defect optimization" (PDF). Journal of Computational Chemistry. 32 (3): 439–452. doi:10.1002/jcc.21633. PMID 20717905. S2CID 1803200.
Goodman, R.P.; Schaap, I.A.T.; Tardin, C.F.; Erben, C.M.; Berry, R.M.; Schmidt, C.F.; Turberfield, A.J. (9 December 2005). "Rapid chiral assembly of rigid DNA building blocks for molecular nanofabrication". Science. 310 (5754): 1661–1665. Bibcode:2005Sci...310.1661G. doi:10.1126/science.1120367. ISSN 0036-8075. PMID 16339440. S2CID 13678773.

worldcat.org

search.worldcat.org

Mao, Chengde (December 2004). "The Emergence of Complexity: Lessons from DNA". PLOS Biology. 2 (12): 2036–2038. doi:10.1371/journal.pbio.0020431. ISSN 1544-9173. PMC 535573. PMID 15597116.
Goodman, R.P.; Schaap, I.A.T.; Tardin, C.F.; Erben, C.M.; Berry, R.M.; Schmidt, C.F.; Turberfield, A.J. (9 December 2005). "Rapid chiral assembly of rigid DNA building blocks for molecular nanofabrication". Science. 310 (5754): 1661–1665. Bibcode:2005Sci...310.1661G. doi:10.1126/science.1120367. ISSN 0036-8075. PMID 16339440. S2CID 13678773.
Williams, Sean; Lund, Kyle; Lin, Chenxiang; Wonka, Peter; Lindsay, Stuart; Yan, Hao (2009). "Tiamat: A Three-Dimensional Editing Tool for Complex DNA Structures". DNA Computing. Lecture Notes in Computer Science. Vol. 5347. Springer Berlin / Heidelberg. pp. 90–101. doi:10.1007/978-3-642-03076-5_8. ISBN 978-3-642-03075-8. ISSN 0302-9743.