Okazaki fragments (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Okazaki fragments" in English language version.

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doi.org

Balakrishnan L, Bambara RA (February 2013). "Okazaki fragment metabolism". Cold Spring Harbor Perspectives in Biology. 5 (2): a010173. doi:10.1101/cshperspect.a010173. PMC 3552508. PMID 23378587.
Okazaki T (2017-05-11). "Days weaving the lagging strand synthesis of DNA - A personal recollection of the discovery of Okazaki fragments and studies on discontinuous replication mechanism". Proceedings of the Japan Academy. Series B, Physical and Biological Sciences. 93 (5): 322–338. Bibcode:2017PJAB...93..322O. doi:10.2183/pjab.93.020. PMC 5489436. PMID 28496054.
MacNeill SA (October 2001). "DNA replication: partners in the Okazaki two-step". Current Biology. 11 (20): R842 – R844. doi:10.1016/s0960-9822(01)00500-0. PMID 11676941. S2CID 15853820.
Ogawa T, Okazaki T (1980). "Discontinuous DNA replication". Annual Review of Biochemistry. 49: 421–457. doi:10.1146/annurev.bi.49.070180.002225. PMID 6250445.
Okazaki R, Okazaki T, Sakabe K, Sugimoto K, Sugino A (February 1968). "Mechanism of DNA chain growth. I. Possible discontinuity and unusual secondary structure of newly synthesized chains". Proceedings of the National Academy of Sciences of the United States of America. 59 (2): 598–605. Bibcode:1968PNAS...59..598O. doi:10.1073/pnas.59.2.598. PMC 224714. PMID 4967086.
Sugimoto K, Okazaki T, Okazaki R (August 1968). "Mechanism of DNA chain growth, II. Accumulation of newly synthesized short chains in E. coli infected with ligase-defective T4 phages". Proceedings of the National Academy of Sciences of the United States of America. 60 (4): 1356–1362. Bibcode:1968PNAS...60.1356S. doi:10.1073/pnas.60.4.1356. PMC 224926. PMID 4299945.
Tsutakawa, Susan (27 June 2017). "Phosphate steering by Flap Endonuclease 1 promotes 5′-flap specificity and incision to prevent genome instability". Nature Communications (8): 15. doi:10.1038/ncomms15855. PMC 5490271. Retrieved 5 November 2024.
Pike JE, Henry RA, Burgers PM, Campbell JL, Bambara RA (December 2010). "An alternative pathway for Okazaki fragment processing: resolution of fold-back flaps by Pif1 helicase". The Journal of Biological Chemistry. 285 (53): 41712–41723. doi:10.1074/jbc.M110.146894. PMC 3009898. PMID 20959454.
Lee JB, Hite RK, Hamdan SM, Xie XS, Richardson CC, van Oijen AM (February 2006). "DNA primase acts as a molecular brake in DNA replication" (PDF). Nature. 439 (7076): 621–624. Bibcode:2006Natur.439..621L. doi:10.1038/nature04317. PMID 16452983. S2CID 3099842.
Soza S, Leva V, Vago R, Ferrari G, Mazzini G, Biamonti G, Montecucco A (April 2009). "DNA ligase I deficiency leads to replication-dependent DNA damage and impacts cell morphology without blocking cell cycle progression". Molecular and Cellular Biology. 29 (8): 2032–2041. doi:10.1128/MCB.01730-08. PMC 2663296. PMID 19223467.
Jin YH, Ayyagari R, Resnick MA, Gordenin DA, Burgers PM (January 2003). "Okazaki fragment maturation in yeast. II. Cooperation between the polymerase and 3'-5'-exonuclease activities of Pol delta in the creation of a ligatable nick". The Journal of Biological Chemistry. 278 (3): 1626–1633. doi:10.1074/jbc.M209803200. PMID 12424237.
Levin DS, Bai W, Yao N, O'Donnell M, Tomkinson AE (November 1997). "An interaction between DNA ligase I and proliferating cell nuclear antigen: implications for Okazaki fragment synthesis and joining". Proceedings of the National Academy of Sciences of the United States of America. 94 (24): 12863–12868. Bibcode:1997PNAS...9412863L. doi:10.1073/pnas.94.24.12863. PMC 24229. PMID 9371766.
Levin DS, McKenna AE, Motycka TA, Matsumoto Y, Tomkinson AE (2000). "Interaction between PCNA and DNA ligase I is critical for joining of Okazaki fragments and long-patch base-excision repair". Current Biology. 10 (15): 919–922. doi:10.1016/S0960-9822(00)00619-9. PMID 10959839. S2CID 14089939.
Jin YH, Obert R, Burgers PM, Kunkel TA, Resnick MA, Gordenin DA (April 2001). "The 3'→5' exonuclease of DNA polymerase delta can substitute for the 5' flap endonuclease Rad27/Fen1 in processing Okazaki fragments and preventing genome instability". Proceedings of the National Academy of Sciences of the United States of America. 98 (9): 5122–5127. doi:10.1073/pnas.091095198. PMC 33174. PMID 11309502.
Liu Y, Kao HI, Bambara RA (2004). "Flap endonuclease 1: a central component of DNA metabolism". Annual Review of Biochemistry. 73: 589–615. doi:10.1146/annurev.biochem.73.012803.092453. PMID 15189154.
Bae SH, Kim DW, Kim J, Kim JH, Kim DH, Kim HD, et al. (July 2002). "Coupling of DNA helicase and endonuclease activities of yeast Dna2 facilitates Okazaki fragment processing". The Journal of Biological Chemistry. 277 (29): 26632–26641. doi:10.1074/jbc.M111026200. PMID 12004053.
Bae SH, Seo YS (December 2000). "Characterization of the enzymatic properties of the yeast dna2 Helicase/endonuclease suggests a new model for Okazaki fragment processing". The Journal of Biological Chemistry. 275 (48): 38022–38031. doi:10.1074/jbc.M006513200. PMID 10984490.
Kang YH, Lee CH, Seo YS (April 2010). "Dna2 on the road to Okazaki fragment processing and genome stability in eukaryotes". Critical Reviews in Biochemistry and Molecular Biology. 45 (2): 71–96. doi:10.3109/10409230903578593. PMID 20131965. S2CID 23897130.
Stewart JA, Campbell JL, Bambara RA (March 2009). "Significance of the dissociation of Dna2 by flap endonuclease 1 to Okazaki fragment processing in Saccharomyces cerevisiae". The Journal of Biological Chemistry. 284 (13): 8283–8291. doi:10.1074/jbc.M809189200. PMC 2659186. PMID 19179330.
Duxin JP, Moore HR, Sidorova J, Karanja K, Honaker Y, Dao B, et al. (June 2012). "Okazaki fragment processing-independent role for human Dna2 enzyme during DNA replication". The Journal of Biological Chemistry. 287 (26): 21980–21991. doi:10.1074/jbc.M112.359018. PMC 3381158. PMID 22570476.
Ayyagari R, Gomes XV, Gordenin DA, Burgers PM (January 2003). "Okazaki fragment maturation in yeast. I. Distribution of functions between FEN1 AND DNA2". The Journal of Biological Chemistry. 278 (3): 1618–1625. doi:10.1074/jbc.M209801200. PMID 12424238.
Matsunaga F, Norais C, Forterre P, Myllykallio H (February 2003). "Identification of short 'eukaryotic' Okazaki fragments synthesized from a prokaryotic replication origin". EMBO Reports. 4 (2): 154–158. doi:10.1038/sj.embor.embor732. PMC 1315830. PMID 12612604.
Zheng L, Shen B (February 2011). "Okazaki fragment maturation: nucleases take centre stage". Journal of Molecular Cell Biology. 3 (1): 23–30. doi:10.1093/jmcb/mjq048. PMC 3030970. PMID 21278448.

harvard.edu

ui.adsabs.harvard.edu

Okazaki T (2017-05-11). "Days weaving the lagging strand synthesis of DNA - A personal recollection of the discovery of Okazaki fragments and studies on discontinuous replication mechanism". Proceedings of the Japan Academy. Series B, Physical and Biological Sciences. 93 (5): 322–338. Bibcode:2017PJAB...93..322O. doi:10.2183/pjab.93.020. PMC 5489436. PMID 28496054.
Okazaki R, Okazaki T, Sakabe K, Sugimoto K, Sugino A (February 1968). "Mechanism of DNA chain growth. I. Possible discontinuity and unusual secondary structure of newly synthesized chains". Proceedings of the National Academy of Sciences of the United States of America. 59 (2): 598–605. Bibcode:1968PNAS...59..598O. doi:10.1073/pnas.59.2.598. PMC 224714. PMID 4967086.
Sugimoto K, Okazaki T, Okazaki R (August 1968). "Mechanism of DNA chain growth, II. Accumulation of newly synthesized short chains in E. coli infected with ligase-defective T4 phages". Proceedings of the National Academy of Sciences of the United States of America. 60 (4): 1356–1362. Bibcode:1968PNAS...60.1356S. doi:10.1073/pnas.60.4.1356. PMC 224926. PMID 4299945.
Lee JB, Hite RK, Hamdan SM, Xie XS, Richardson CC, van Oijen AM (February 2006). "DNA primase acts as a molecular brake in DNA replication" (PDF). Nature. 439 (7076): 621–624. Bibcode:2006Natur.439..621L. doi:10.1038/nature04317. PMID 16452983. S2CID 3099842.
Levin DS, Bai W, Yao N, O'Donnell M, Tomkinson AE (November 1997). "An interaction between DNA ligase I and proliferating cell nuclear antigen: implications for Okazaki fragment synthesis and joining". Proceedings of the National Academy of Sciences of the United States of America. 94 (24): 12863–12868. Bibcode:1997PNAS...9412863L. doi:10.1073/pnas.94.24.12863. PMC 24229. PMID 9371766.

illinois.edu

life.illinois.edu

Murray S, Mehrtens B. "Are Okazaki fragments unique to eukaryotes? Or is it universal, so it's present in bacterial DNA replication as well?". MCB 150 Frequently Asked Questions. School of Molecular and Cellular Biology, University of Illinois at Urbana-Champaign. Archived from the original on 3 August 2014.

molecular-plant-biotechnology.info

"Eukaryotic DNA Replication". Molecular-Plant-Biotechnology. multilab.biz. 29 March 2011. Archived from the original on 22 August 2011.

nature.com

Tsutakawa, Susan (27 June 2017). "Phosphate steering by Flap Endonuclease 1 promotes 5′-flap specificity and incision to prevent genome instability". Nature Communications (8): 15. doi:10.1038/ncomms15855. PMC 5490271. Retrieved 5 November 2024.

nih.gov

pubmed.ncbi.nlm.nih.gov

Balakrishnan L, Bambara RA (February 2013). "Okazaki fragment metabolism". Cold Spring Harbor Perspectives in Biology. 5 (2): a010173. doi:10.1101/cshperspect.a010173. PMC 3552508. PMID 23378587.
Okazaki T (2017-05-11). "Days weaving the lagging strand synthesis of DNA - A personal recollection of the discovery of Okazaki fragments and studies on discontinuous replication mechanism". Proceedings of the Japan Academy. Series B, Physical and Biological Sciences. 93 (5): 322–338. Bibcode:2017PJAB...93..322O. doi:10.2183/pjab.93.020. PMC 5489436. PMID 28496054.
MacNeill SA (October 2001). "DNA replication: partners in the Okazaki two-step". Current Biology. 11 (20): R842 – R844. doi:10.1016/s0960-9822(01)00500-0. PMID 11676941. S2CID 15853820.
Ogawa T, Okazaki T (1980). "Discontinuous DNA replication". Annual Review of Biochemistry. 49: 421–457. doi:10.1146/annurev.bi.49.070180.002225. PMID 6250445.
Okazaki R, Okazaki T, Sakabe K, Sugimoto K, Sugino A (February 1968). "Mechanism of DNA chain growth. I. Possible discontinuity and unusual secondary structure of newly synthesized chains". Proceedings of the National Academy of Sciences of the United States of America. 59 (2): 598–605. Bibcode:1968PNAS...59..598O. doi:10.1073/pnas.59.2.598. PMC 224714. PMID 4967086.
Sugimoto K, Okazaki T, Okazaki R (August 1968). "Mechanism of DNA chain growth, II. Accumulation of newly synthesized short chains in E. coli infected with ligase-defective T4 phages". Proceedings of the National Academy of Sciences of the United States of America. 60 (4): 1356–1362. Bibcode:1968PNAS...60.1356S. doi:10.1073/pnas.60.4.1356. PMC 224926. PMID 4299945.
Pike JE, Henry RA, Burgers PM, Campbell JL, Bambara RA (December 2010). "An alternative pathway for Okazaki fragment processing: resolution of fold-back flaps by Pif1 helicase". The Journal of Biological Chemistry. 285 (53): 41712–41723. doi:10.1074/jbc.M110.146894. PMC 3009898. PMID 20959454.
Lee JB, Hite RK, Hamdan SM, Xie XS, Richardson CC, van Oijen AM (February 2006). "DNA primase acts as a molecular brake in DNA replication" (PDF). Nature. 439 (7076): 621–624. Bibcode:2006Natur.439..621L. doi:10.1038/nature04317. PMID 16452983. S2CID 3099842.
Soza S, Leva V, Vago R, Ferrari G, Mazzini G, Biamonti G, Montecucco A (April 2009). "DNA ligase I deficiency leads to replication-dependent DNA damage and impacts cell morphology without blocking cell cycle progression". Molecular and Cellular Biology. 29 (8): 2032–2041. doi:10.1128/MCB.01730-08. PMC 2663296. PMID 19223467.
Jin YH, Ayyagari R, Resnick MA, Gordenin DA, Burgers PM (January 2003). "Okazaki fragment maturation in yeast. II. Cooperation between the polymerase and 3'-5'-exonuclease activities of Pol delta in the creation of a ligatable nick". The Journal of Biological Chemistry. 278 (3): 1626–1633. doi:10.1074/jbc.M209803200. PMID 12424237.
Levin DS, Bai W, Yao N, O'Donnell M, Tomkinson AE (November 1997). "An interaction between DNA ligase I and proliferating cell nuclear antigen: implications for Okazaki fragment synthesis and joining". Proceedings of the National Academy of Sciences of the United States of America. 94 (24): 12863–12868. Bibcode:1997PNAS...9412863L. doi:10.1073/pnas.94.24.12863. PMC 24229. PMID 9371766.
Levin DS, McKenna AE, Motycka TA, Matsumoto Y, Tomkinson AE (2000). "Interaction between PCNA and DNA ligase I is critical for joining of Okazaki fragments and long-patch base-excision repair". Current Biology. 10 (15): 919–922. doi:10.1016/S0960-9822(00)00619-9. PMID 10959839. S2CID 14089939.
Jin YH, Obert R, Burgers PM, Kunkel TA, Resnick MA, Gordenin DA (April 2001). "The 3'→5' exonuclease of DNA polymerase delta can substitute for the 5' flap endonuclease Rad27/Fen1 in processing Okazaki fragments and preventing genome instability". Proceedings of the National Academy of Sciences of the United States of America. 98 (9): 5122–5127. doi:10.1073/pnas.091095198. PMC 33174. PMID 11309502.
Liu Y, Kao HI, Bambara RA (2004). "Flap endonuclease 1: a central component of DNA metabolism". Annual Review of Biochemistry. 73: 589–615. doi:10.1146/annurev.biochem.73.012803.092453. PMID 15189154.
Bae SH, Kim DW, Kim J, Kim JH, Kim DH, Kim HD, et al. (July 2002). "Coupling of DNA helicase and endonuclease activities of yeast Dna2 facilitates Okazaki fragment processing". The Journal of Biological Chemistry. 277 (29): 26632–26641. doi:10.1074/jbc.M111026200. PMID 12004053.
Bae SH, Seo YS (December 2000). "Characterization of the enzymatic properties of the yeast dna2 Helicase/endonuclease suggests a new model for Okazaki fragment processing". The Journal of Biological Chemistry. 275 (48): 38022–38031. doi:10.1074/jbc.M006513200. PMID 10984490.
Kang YH, Lee CH, Seo YS (April 2010). "Dna2 on the road to Okazaki fragment processing and genome stability in eukaryotes". Critical Reviews in Biochemistry and Molecular Biology. 45 (2): 71–96. doi:10.3109/10409230903578593. PMID 20131965. S2CID 23897130.
Stewart JA, Campbell JL, Bambara RA (March 2009). "Significance of the dissociation of Dna2 by flap endonuclease 1 to Okazaki fragment processing in Saccharomyces cerevisiae". The Journal of Biological Chemistry. 284 (13): 8283–8291. doi:10.1074/jbc.M809189200. PMC 2659186. PMID 19179330.
Duxin JP, Moore HR, Sidorova J, Karanja K, Honaker Y, Dao B, et al. (June 2012). "Okazaki fragment processing-independent role for human Dna2 enzyme during DNA replication". The Journal of Biological Chemistry. 287 (26): 21980–21991. doi:10.1074/jbc.M112.359018. PMC 3381158. PMID 22570476.
Ayyagari R, Gomes XV, Gordenin DA, Burgers PM (January 2003). "Okazaki fragment maturation in yeast. I. Distribution of functions between FEN1 AND DNA2". The Journal of Biological Chemistry. 278 (3): 1618–1625. doi:10.1074/jbc.M209801200. PMID 12424238.
Matsunaga F, Norais C, Forterre P, Myllykallio H (February 2003). "Identification of short 'eukaryotic' Okazaki fragments synthesized from a prokaryotic replication origin". EMBO Reports. 4 (2): 154–158. doi:10.1038/sj.embor.embor732. PMC 1315830. PMID 12612604.
Zheng L, Shen B (February 2011). "Okazaki fragment maturation: nucleases take centre stage". Journal of Molecular Cell Biology. 3 (1): 23–30. doi:10.1093/jmcb/mjq048. PMC 3030970. PMID 21278448.

ncbi.nlm.nih.gov

Balakrishnan L, Bambara RA (February 2013). "Okazaki fragment metabolism". Cold Spring Harbor Perspectives in Biology. 5 (2): a010173. doi:10.1101/cshperspect.a010173. PMC 3552508. PMID 23378587.
Okazaki T (2017-05-11). "Days weaving the lagging strand synthesis of DNA - A personal recollection of the discovery of Okazaki fragments and studies on discontinuous replication mechanism". Proceedings of the Japan Academy. Series B, Physical and Biological Sciences. 93 (5): 322–338. Bibcode:2017PJAB...93..322O. doi:10.2183/pjab.93.020. PMC 5489436. PMID 28496054.
Cooper GM (2000). "DNA Replication". The Cell: A Molecular Approach (2nd ed.). Sunderland (MA): Sinauer Associates.
Okazaki R, Okazaki T, Sakabe K, Sugimoto K, Sugino A (February 1968). "Mechanism of DNA chain growth. I. Possible discontinuity and unusual secondary structure of newly synthesized chains". Proceedings of the National Academy of Sciences of the United States of America. 59 (2): 598–605. Bibcode:1968PNAS...59..598O. doi:10.1073/pnas.59.2.598. PMC 224714. PMID 4967086.
Sugimoto K, Okazaki T, Okazaki R (August 1968). "Mechanism of DNA chain growth, II. Accumulation of newly synthesized short chains in E. coli infected with ligase-defective T4 phages". Proceedings of the National Academy of Sciences of the United States of America. 60 (4): 1356–1362. Bibcode:1968PNAS...60.1356S. doi:10.1073/pnas.60.4.1356. PMC 224926. PMID 4299945.
Tsutakawa, Susan (27 June 2017). "Phosphate steering by Flap Endonuclease 1 promotes 5′-flap specificity and incision to prevent genome instability". Nature Communications (8): 15. doi:10.1038/ncomms15855. PMC 5490271. Retrieved 5 November 2024.
Pike JE, Henry RA, Burgers PM, Campbell JL, Bambara RA (December 2010). "An alternative pathway for Okazaki fragment processing: resolution of fold-back flaps by Pif1 helicase". The Journal of Biological Chemistry. 285 (53): 41712–41723. doi:10.1074/jbc.M110.146894. PMC 3009898. PMID 20959454.
Soza S, Leva V, Vago R, Ferrari G, Mazzini G, Biamonti G, Montecucco A (April 2009). "DNA ligase I deficiency leads to replication-dependent DNA damage and impacts cell morphology without blocking cell cycle progression". Molecular and Cellular Biology. 29 (8): 2032–2041. doi:10.1128/MCB.01730-08. PMC 2663296. PMID 19223467.
Levin DS, Bai W, Yao N, O'Donnell M, Tomkinson AE (November 1997). "An interaction between DNA ligase I and proliferating cell nuclear antigen: implications for Okazaki fragment synthesis and joining". Proceedings of the National Academy of Sciences of the United States of America. 94 (24): 12863–12868. Bibcode:1997PNAS...9412863L. doi:10.1073/pnas.94.24.12863. PMC 24229. PMID 9371766.
Jin YH, Obert R, Burgers PM, Kunkel TA, Resnick MA, Gordenin DA (April 2001). "The 3'→5' exonuclease of DNA polymerase delta can substitute for the 5' flap endonuclease Rad27/Fen1 in processing Okazaki fragments and preventing genome instability". Proceedings of the National Academy of Sciences of the United States of America. 98 (9): 5122–5127. doi:10.1073/pnas.091095198. PMC 33174. PMID 11309502.
Stewart JA, Campbell JL, Bambara RA (March 2009). "Significance of the dissociation of Dna2 by flap endonuclease 1 to Okazaki fragment processing in Saccharomyces cerevisiae". The Journal of Biological Chemistry. 284 (13): 8283–8291. doi:10.1074/jbc.M809189200. PMC 2659186. PMID 19179330.
Duxin JP, Moore HR, Sidorova J, Karanja K, Honaker Y, Dao B, et al. (June 2012). "Okazaki fragment processing-independent role for human Dna2 enzyme during DNA replication". The Journal of Biological Chemistry. 287 (26): 21980–21991. doi:10.1074/jbc.M112.359018. PMC 3381158. PMID 22570476.
Matsunaga F, Norais C, Forterre P, Myllykallio H (February 2003). "Identification of short 'eukaryotic' Okazaki fragments synthesized from a prokaryotic replication origin". EMBO Reports. 4 (2): 154–158. doi:10.1038/sj.embor.embor732. PMC 1315830. PMID 12612604.
Zheng L, Shen B (February 2011). "Okazaki fragment maturation: nucleases take centre stage". Journal of Molecular Cell Biology. 3 (1): 23–30. doi:10.1093/jmcb/mjq048. PMC 3030970. PMID 21278448.

rug.nl

pure.rug.nl

Lee JB, Hite RK, Hamdan SM, Xie XS, Richardson CC, van Oijen AM (February 2006). "DNA primase acts as a molecular brake in DNA replication" (PDF). Nature. 439 (7076): 621–624. Bibcode:2006Natur.439..621L. doi:10.1038/nature04317. PMID 16452983. S2CID 3099842.

semanticscholar.org

api.semanticscholar.org

MacNeill SA (October 2001). "DNA replication: partners in the Okazaki two-step". Current Biology. 11 (20): R842 – R844. doi:10.1016/s0960-9822(01)00500-0. PMID 11676941. S2CID 15853820.
Lee JB, Hite RK, Hamdan SM, Xie XS, Richardson CC, van Oijen AM (February 2006). "DNA primase acts as a molecular brake in DNA replication" (PDF). Nature. 439 (7076): 621–624. Bibcode:2006Natur.439..621L. doi:10.1038/nature04317. PMID 16452983. S2CID 3099842.
Levin DS, McKenna AE, Motycka TA, Matsumoto Y, Tomkinson AE (2000). "Interaction between PCNA and DNA ligase I is critical for joining of Okazaki fragments and long-patch base-excision repair". Current Biology. 10 (15): 919–922. doi:10.1016/S0960-9822(00)00619-9. PMID 10959839. S2CID 14089939.
Kang YH, Lee CH, Seo YS (April 2010). "Dna2 on the road to Okazaki fragment processing and genome stability in eukaryotes". Critical Reviews in Biochemistry and Molecular Biology. 45 (2): 71–96. doi:10.3109/10409230903578593. PMID 20131965. S2CID 23897130.

web.archive.org

Murray S, Mehrtens B. "Are Okazaki fragments unique to eukaryotes? Or is it universal, so it's present in bacterial DNA replication as well?". MCB 150 Frequently Asked Questions. School of Molecular and Cellular Biology, University of Illinois at Urbana-Champaign. Archived from the original on 3 August 2014.
"Eukaryotic DNA Replication". Molecular-Plant-Biotechnology. multilab.biz. 29 March 2011. Archived from the original on 22 August 2011.