Optogenetics (English Wikipedia)
Analysis of information sources in references of the Wikipedia article "Optogenetics" in English language version.
refsWebsite
Global rank
English rank
18th place
17th place
11th place
8th place
5th place
5th place
9th place
13th place
896th place
674th place
383rd place
320th place
1st place
1st place
234th place
397th place
low place
low place
8,771st place
5,253rd place
2,869th place
4,557th place
102nd place
76th place
1,523rd place
976th place
22nd place
19th place
low place
low place
7th place
7th place
low place
low place
149th place
178th place
low place
low place
low place
low place
low place
low place
low place
low place
low place
low place
low place
low place
3,464th place
2,377th place
low place
low place
low place
low place
amacad.org (Global: 3,464th place; English: 2,377th place)
- "Rumford Prize Awarded for the Invention and Refinement of Optogenetics". American Academy of Arts & Sciences. 30 January 2019. Retrieved 2019-03-12.
arxiv.org (Global: 69th place; English: 59th place)
- Baratta MV, Nakamura S, Dobelis P, Pomrenze MB, Dolzani SD, Cooper DC (2 April 2012). "Optogenetic control of genetically-targeted pyramidal neuron activity in prefrontal cortex" (PDF). Nature Precedings. arXiv:1204.0710. Bibcode:2012arXiv1204.0710B. doi:10.1038/npre.2012.7102.1. S2CID 31641314.
atlasofscience.org (Global: low place; English: low place)
- "Engineering long-wavelength light-driven ion channels to hear the light. Atlas of Science". Retrieved 7 November 2019.
beckurts-stiftung.de (Global: low place; English: low place)
- "Karl Heinz Beckurts-Preis 2010". Karl Heinz Beckurts Foundation.
doi.org (Global: 2nd place; English: 2nd place)
- Tsien JZ (2016). "Cre-Lox Neurogenetics: 20 Years of Versatile Applications in Brain Research and Counting…". Frontiers in Genetics. 7: 19. doi:10.3389/fgene.2016.00019. PMC 4759636. PMID 26925095.
- Tsien JZ, Chen DF, Gerber D, Tom C, Mercer EH, Anderson DJ, et al. (December 1996). "Subregion- and cell type-restricted gene knockout in mouse brain". Cell. 87 (7): 1317–26. doi:10.1016/s0092-8674(00)81826-7. PMID 8980237.
- Shimizu-Sato S, Huq E, Tepperman JM, Quail PH (October 2002). "A light-switchable gene promoter system". Nature Biotechnology. 20 (10): 1041–1044. doi:10.1038/nbt734. PMID 12219076. S2CID 24914960.
- Guo ZV, Li N, Huber D, Ophir E, Gutnisky D, Ting JT, et al. (January 2014). "Flow of cortical activity underlying a tactile decision in mice". Neuron. 81 (1): 179–194. doi:10.1016/j.neuron.2013.10.020. PMC 3984938. PMID 24361077.
- Lak A, Okun M, Moss MM, Gurnani H, Farrell K, Wells MJ, et al. (February 2020). "Dopaminergic and Prefrontal Basis of Learning from Sensory Confidence and Reward Value". Neuron. 105 (4): 700–711.e6. doi:10.1016/j.neuron.2019.11.018. PMC 7031700. PMID 31859030.
- Liu X, Ramirez S, Pang PT, Puryear CB, Govindarajan A, Deisseroth K, Tonegawa S (March 2012). "Optogenetic stimulation of a hippocampal engram activates fear memory recall". Nature. 484 (7394): 381–385. Bibcode:2012Natur.484..381L. doi:10.1038/nature11028. PMC 3331914. PMID 22441246.
- Tanaka R, Higuchi T, Kohatsu S, Sato K, Yamamoto D (November 2017). "Optogenetic Activation of the fruitless-Labeled Circuitry in Drosophila subobscura Males Induces Mating Motor Acts". The Journal of Neuroscience. 37 (48): 11662–11674. doi:10.1523/JNEUROSCI.1943-17.2017. PMC 6705751. PMID 29109241.
- Stamatakis AM, Stuber GD (November 2012). "Optogenetic strategies to dissect the neural circuits that underlie reward and addiction". Cold Spring Harbor Perspectives in Medicine. 2 (11) a011924. doi:10.1101/cshperspect.a011924. PMC 3543095. PMID 23043156.
- Musso, Pierre-Yves; Junca, Pierre; Jelen, Meghan; Feldman-Kiss, Damian; Zhang, Han; Chan, Rachel CW; Gordon, Michael D (2019-07-19). Ramaswami, Mani; Dulac, Catherine (eds.). "Closed-loop optogenetic activation of peripheral or central neurons modulates feeding in freely moving Drosophila". eLife. 8 e45636. doi:10.7554/eLife.45636. ISSN 2050-084X. PMC 6668987. PMID 31322499.
- Feng, Kai; Sen, Rajyashree; Minegishi, Ryo; Dübbert, Michael; Bockemühl, Till; Büschges, Ansgar; Dickson, Barry J. (2020-12-02). "Distributed control of motor circuits for backward walking in Drosophila". Nature Communications. 11 (1): 6166. Bibcode:2020NatCo..11.6166F. doi:10.1038/s41467-020-19936-x. ISSN 2041-1723. PMC 7710706. PMID 33268800. S2CID 227255627.
- Sahel JA, Boulanger-Scemama E, Pagot C, Arleo A, Galluppi F, Martel JN, et al. (July 2021). "Partial recovery of visual function in a blind patient after optogenetic therapy". Nature Medicine. 27 (7): 1223–1229. doi:10.1038/s41591-021-01351-4. PMID 34031601.
- Lim, Diana; LeDue, Jeffrey; Mohajerani, Majid; Vanni, Matthieu; Murphy, Timothy (2013). "Optogenetic approaches for functional mouse brain mapping". Frontiers in Neuroscience. 7: 54. doi:10.3389/fnins.2013.00054. ISSN 1662-453X. PMC 3622058. PMID 23596383.
- Lee, Candice; Lavoie, Andreanne; Liu, Jiashu; Chen, Simon X.; Liu, Bao-hua (2020). "Light Up the Brain: The Application of Optogenetics in Cell-Type Specific Dissection of Mouse Brain Circuits". Frontiers in Neural Circuits. 14 18. doi:10.3389/fncir.2020.00018. ISSN 1662-5110. PMC 7193678. PMID 32390806.
- Franconville, Romain; Beron, Celia; Jayaraman, Vivek (2018-08-20). VijayRaghavan, K; Scott, Kristin; Heinze, Stanley (eds.). "Building a functional connectome of the Drosophila central complex". eLife. 7 e37017. doi:10.7554/eLife.37017. ISSN 2050-084X. PMC 6150698. PMID 30124430.
- Chen, Chenghao; Agrawal, Sweta; Mark, Brandon; Mamiya, Akira; Sustar, Anne; Phelps, Jasper S.; Lee, Wei-Chung Allen; Dickson, Barry J.; Card, Gwyneth M.; Tuthill, John C. (2021-12-06). "Functional architecture of neural circuits for leg proprioception in Drosophila". Current Biology. 31 (23): 5163–5175.e7. Bibcode:2021CBio...31E5163C. doi:10.1016/j.cub.2021.09.035. ISSN 0960-9822. PMC 8665017. PMID 34637749.
- Primer on Optogenetics: Pastrana E (2010). "Optogenetics: Controlling cell function with light". Nature Methods. 8 (1): 24–25. doi:10.1038/nmeth.f.323. S2CID 5808517.
Editorial: "Method of the Year 2010". Nature Methods. 8 (1): 1. 2010. doi:10.1038/nmeth.f.321.
Commentary: Deisseroth K (January 2011). "Optogenetics". Nature Methods. 8 (1): 26–29. doi:10.1038/nmeth.f.324. PMC 6814250. PMID 21191368. - News Staff (December 2010). "Insights of the decade. Stepping away from the trees for a look at the forest. Introduction". Science. 330 (6011): 1612–1613. Bibcode:2010Sci...330.1612.. doi:10.1126/science.330.6011.1612. PMID 21163985. S2CID 206593135.
- Crick F (December 1999). "The impact of molecular biology on neuroscience". Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 354 (1392): 2021–2025. doi:10.1098/rstb.1999.0541. PMC 1692710. PMID 10670022.
- Hoffmann A, Hildebrandt V, Heberle J, Büldt G (September 1994). "Photoactive mitochondria: in vivo transfer of a light-driven proton pump into the inner mitochondrial membrane of Schizosaccharomyces pombe". Proceedings of the National Academy of Sciences of the United States of America. 91 (20): 9367–9371. Bibcode:1994PNAS...91.9367H. doi:10.1073/pnas.91.20.9367. PMC 44813. PMID 7937771.
- Nagel, G.; Möckel, B.; Büldt, G.; Bamberg, E. (1995-12-18). "Functional expression of bacteriorhodopsin in oocytes allows direct measurement of voltage dependence of light induced H+ pumping". FEBS Letters. 377 (2): 263–266. doi:10.1016/0014-5793(95)01356-3. ISSN 0014-5793. PMID 8543064.
- Zemelman BV, Lee GA, Ng M, Miesenböck G (January 2002). "Selective photostimulation of genetically chARGed neurons". Neuron. 33 (1): 15–22. doi:10.1016/S0896-6273(01)00574-8. PMID 11779476. S2CID 16391269.
- Zemelman BV, Nesnas N, Lee GA, Miesenbock G (February 2003). "Photochemical gating of heterologous ion channels: remote control over genetically designated populations of neurons". Proceedings of the National Academy of Sciences of the United States of America. 100 (3): 1352–1357. Bibcode:2003PNAS..100.1352Z. doi:10.1073/pnas.242738899. PMC 298776. PMID 12540832.
- Banghart M, Borges K, Isacoff E, Trauner D, Kramer RH (December 2004). "Light-activated ion channels for remote control of neuronal firing". Nature Neuroscience. 7 (12): 1381–1386. doi:10.1038/nn1356. PMC 1447674. PMID 15558062.
- Volgraf M, Gorostiza P, Numano R, Kramer RH, Isacoff EY, Trauner D (January 2006). "Allosteric control of an ionotropic glutamate receptor with an optical switch". Nature Chemical Biology. 2 (1): 47–52. doi:10.1038/nchembio756. PMC 1447676. PMID 16408092.
- Arenkiel BR, Klein ME, Davison IG, Katz LC, Ehlers MD (April 2008). "Genetic control of neuronal activity in mice conditionally expressing TRPV1". Nature Methods. 5 (4): 299–302. doi:10.1038/nmeth.1190. PMC 3127246. PMID 18327266.
- Güler AD, Rainwater A, Parker JG, Jones GL, Argilli E, Arenkiel BR, et al. (March 2012). "Transient activation of specific neurons in mice by selective expression of the capsaicin receptor". Nature Communications. 3 746. Bibcode:2012NatCo...3..746G. doi:10.1038/ncomms1749. PMC 3592340. PMID 22434189.
- Wang M, Perova Z, Arenkiel BR, Li B (May 2014). "Synaptic modifications in the medial prefrontal cortex in susceptibility and resilience to stress". The Journal of Neuroscience. 34 (22): 7485–7492. doi:10.1523/JNEUROSCI.5294-13.2014. PMC 4035514. PMID 24872553.
- Nagel G, Szellas T, Huhn W, Kateriya S, Adeishvili N, Berthold P, et al. (November 2003). "Channelrhodopsin-2, a directly light-gated cation-selective membrane channel". Proceedings of the National Academy of Sciences of the United States of America. 100 (24): 13940–13945. Bibcode:2003PNAS..10013940N. doi:10.1073/pnas.1936192100. PMC 283525. PMID 14615590.
- Harz H, Hegemann P (1991-06-06). "Rhodopsin-regulated calcium currents in Chlamydomonas". Nature. 351 (6326): 489–491. Bibcode:1991Natur.351..489H. doi:10.1038/351489a0. S2CID 4309593.
- Nagel G, Ollig D, Fuhrmann M, Kateriya S, Musti AM, Bamberg E, Hegemann P (June 2002). "Channelrhodopsin-1: a light-gated proton channel in green algae". Science. 296 (5577): 2395–2398. Bibcode:2002Sci...296.2395N. doi:10.1126/science.1072068. PMID 12089443. S2CID 206506942.
- Deisseroth K (September 2015). "Optogenetics: 10 years of microbial opsins in neuroscience". Nature Neuroscience. 18 (9): 1213–1225. doi:10.1038/nn.4091. PMC 4790845. PMID 26308982.
- Boyden ES, Zhang F, Bamberg E, Nagel G, Deisseroth K (September 2005). "Millisecond-timescale, genetically targeted optical control of neural activity". Nature Neuroscience. 8 (9): 1263–1268. doi:10.1038/nn1525. PMID 16116447. S2CID 6809511.
- Deisseroth, Karl (26 August 2015). "Optogenetics: 10 years of microbial opsins in neuroscience". Nature Neuroscience. 18 (9): 1213–1225. doi:10.1038/nn.4091. PMC 4790845. PMID 26308982.
- Bi A, Cui J, Ma YP, Olshevskaya E, Pu M, Dizhoor AM, Pan ZH (April 2006). "Ectopic expression of a microbial-type rhodopsin restores visual responses in mice with photoreceptor degeneration". Neuron. 50 (1): 23–33. doi:10.1016/j.neuron.2006.02.026. PMC 1459045. PMID 16600853.
- Lima SQ, Miesenböck G (April 2005). "Remote control of behavior through genetically targeted photostimulation of neurons". Cell. 121 (1): 141–152. doi:10.1016/j.cell.2005.02.004. PMID 15820685. S2CID 14608546.
- Li X, Gutierrez DV, Hanson MG, Han J, Mark MD, Chiel H, et al. (December 2005). "Fast noninvasive activation and inhibition of neural and network activity by vertebrate rhodopsin and green algae channelrhodopsin". Proceedings of the National Academy of Sciences of the United States of America. 102 (49): 17816–17821. Bibcode:2005PNAS..10217816L. doi:10.1073/pnas.0509030102. PMC 1292990. PMID 16306259.
- Nagel G, Brauner M, Liewald JF, Adeishvili N, Bamberg E, Gottschalk A (December 2005). "Light activation of channelrhodopsin-2 in excitable cells of Caenorhabditis elegans triggers rapid behavioral responses". Current Biology. 15 (24): 2279–2284. Bibcode:2005CBio...15.2279N. doi:10.1016/j.cub.2005.11.032. PMID 16360690. S2CID 7036529.
- Tsien JZ, Chen DF, Gerber D, Tom C, Mercer EH, Anderson DJ, et al. (December 1996). "Subregion- and cell type-restricted gene knockout in mouse brain". Cell. 87 (7): 1317–1326. doi:10.1016/S0092-8674(00)81826-7. PMID 8980237. S2CID 863399.
- Tsien JZ (2016). "Cre-Lox Neurogenetics: 20 Years of Versatile Applications in Brain Research and Counting..." Frontiers in Genetics. 7: 19. doi:10.3389/fgene.2016.00019. PMC 4759636. PMID 26925095.
- Han X, Boyden ES (March 2007). "Multiple-color optical activation, silencing, and desynchronization of neural activity, with single-spike temporal resolution". PLOS ONE. 2 (3) e299. Public Library of Science. Bibcode:2007PLoSO...2..299H. doi:10.1371/journal.pone.0000299. OCLC 678618519. PMC 1808431. PMID 17375185.
- Zhang F, Wang LP, Brauner M, Liewald JF, Kay K, Watzke N, et al. (April 2007). "Multimodal fast optical interrogation of neural circuitry". Nature. 446 (7136): 633–639. Bibcode:2007Natur.446..633Z. doi:10.1038/nature05744. PMID 17410168. S2CID 4415339.
- Schröder-Lang S, Schwärzel M, Seifert R, Strünker T, Kateriya S, Looser J, et al. (January 2007). "Fast manipulation of cellular cAMP level by light in vivo". Nature Methods. 4 (1): 39–42. doi:10.1038/nmeth975. PMID 17128267. S2CID 10616442.
- Gao S, Nagpal J, Schneider MW, Kozjak-Pavlovic V, Nagel G, Gottschalk A (September 2015). "Optogenetic manipulation of cGMP in cells and animals by the tightly light-regulated guanylyl-cyclase opsin CyclOp". Nature Communications. 6 (1) 8046. Bibcode:2015NatCo...6.8046G. doi:10.1038/ncomms9046. PMC 4569695. PMID 26345128.
- Baratta MV, Nakamura S, Dobelis P, Pomrenze MB, Dolzani SD, Cooper DC (2 April 2012). "Optogenetic control of genetically-targeted pyramidal neuron activity in prefrontal cortex" (PDF). Nature Precedings. arXiv:1204.0710. Bibcode:2012arXiv1204.0710B. doi:10.1038/npre.2012.7102.1. S2CID 31641314.
- Husson SJ, Liewald JF, Schultheis C, Stirman JN, Lu H, Gottschalk A (2012). Samuel A (ed.). "Microbial light-activatable proton pumps as neuronal inhibitors to functionally dissect neuronal networks in C. elegans". PLOS ONE. 7 (7) e40937. Bibcode:2012PLoSO...740937H. doi:10.1371/journal.pone.0040937. PMC 3397962. PMID 22815873.
- Liu Y, LeBeouf B, Guo X, Correa PA, Gualberto DG, Lints R, Garcia LR (March 2011). Goodman MB (ed.). "A cholinergic-regulated circuit coordinates the maintenance and bi-stable states of a sensory-motor behavior during Caenorhabditis elegans male copulation". PLOS Genetics. 7 (3) e1001326. doi:10.1371/journal.pgen.1001326. PMC 3053324. PMID 21423722.
- Beck S, Yu-Strzelczyk J, Pauls D, Constantin OM, Gee CE, Ehmann N, et al. (2018). "Synthetic Light-Activated Ion Channels for Optogenetic Activation and Inhibition". Frontiers in Neuroscience. 12 643. doi:10.3389/fnins.2018.00643. PMC 6176052. PMID 30333716.
- Sierra YA, Rost B, Oldani S, Schneider-Warme F, Seifert R, Schmitz D, Hegemann P (November 2018). "Potassium channel-based two component optogenetic tool for silencing of excitable cells". Biophysical Journal. 114 (3): 668a. Bibcode:2018BpJ...114..668A. doi:10.1016/j.bpj.2017.11.3607. hdl:21.11116/0000-0003-4AEF-E.
- Zhao S, Cunha C, Zhang F, Liu Q, Gloss B, Deisseroth K, et al. (August 2008). "Improved expression of halorhodopsin for light-induced silencing of neuronal activity". Brain Cell Biology. 36 (1–4): 141–154. doi:10.1007/s11068-008-9034-7. PMC 3057022. PMID 18931914.
- Gradinaru V, Thompson KR, Deisseroth K (August 2008). "eNpHR: a Natronomonas halorhodopsin enhanced for optogenetic applications". Brain Cell Biology. 36 (1–4): 129–139. doi:10.1007/s11068-008-9027-6. PMC 2588488. PMID 18677566.
- Witten IB, Lin SC, Brodsky M, Prakash R, Diester I, Anikeeva P, et al. (December 2010). "Cholinergic interneurons control local circuit activity and cocaine conditioning". Science. 330 (6011): 1677–1681. Bibcode:2010Sci...330.1677W. doi:10.1126/science.1193771. PMC 3142356. PMID 21164015.
- Kim JM, Hwa J, Garriga P, Reeves PJ, RajBhandary UL, Khorana HG (February 2005). "Light-driven activation of beta 2-adrenergic receptor signaling by a chimeric rhodopsin containing the beta 2-adrenergic receptor cytoplasmic loops". Biochemistry. 44 (7): 2284–2292. doi:10.1021/bi048328i. PMID 15709741.
- Airan RD, Thompson KR, Fenno LE, Bernstein H, Deisseroth K (April 2009). "Temporally precise in vivo control of intracellular signalling". Nature. 458 (7241): 1025–1029. Bibcode:2009Natur.458.1025A. doi:10.1038/nature07926. PMID 19295515. S2CID 4401796.
- Levskaya A, Weiner OD, Lim WA, Voigt CA (October 2009). "Spatiotemporal control of cell signalling using a light-switchable protein interaction". Nature. 461 (7266): 997–1001. Bibcode:2009Natur.461..997L. doi:10.1038/nature08446. PMC 2989900. PMID 19749742.
- Wu YI, Frey D, Lungu OI, Jaehrig A, Schlichting I, Kuhlman B, Hahn KM (September 2009). "A genetically encoded photoactivatable Rac controls the motility of living cells". Nature. 461 (7260): 104–108. Bibcode:2009Natur.461..104W. doi:10.1038/nature08241. PMC 2766670. PMID 19693014.
- Yazawa M, Sadaghiani AM, Hsueh B, Dolmetsch RE (October 2009). "Induction of protein-protein interactions in live cells using light". Nature Biotechnology. 27 (10): 941–945. doi:10.1038/nbt.1569. PMID 19801976. S2CID 205274357.
- Stierl M, Stumpf P, Udwari D, Gueta R, Hagedorn R, Losi A, et al. (January 2011). "Light modulation of cellular cAMP by a small bacterial photoactivated adenylyl cyclase, bPAC, of the soil bacterium Beggiatoa". The Journal of Biological Chemistry. 286 (2): 1181–1188. doi:10.1074/jbc.M110.185496. PMC 3020725. PMID 21030594.
- Ryu MH, Moskvin OV, Siltberg-Liberles J, Gomelsky M (December 2010). "Natural and engineered photoactivated nucleotidyl cyclases for optogenetic applications". The Journal of Biological Chemistry. 285 (53): 41501–41508. doi:10.1074/jbc.M110.177600. PMC 3009876. PMID 21030591.
- Mahn, Mathias; Saraf-Sinik, Inbar; Patil, Pritish; Pulin, Mauro; Bitton, Eyal; Karalis, Nikolaos; Bruentgens, Felicitas; Palgi, Shaked; Gat, Asaf; Dine, Julien; Wietek, Jonas; Davidi, Ido; Levy, Rivka; Litvin, Anna; Zhou, Fangmin (May 2021). "Efficient optogenetic silencing of neurotransmitter release with a mosquito rhodopsin". Neuron. 109 (10): 1621–1635.e8. doi:10.1016/j.neuron.2021.03.013. PMC 7611984. PMID 33979634.
- Wietek, Jonas; Nozownik, Adrianna; Pulin, Mauro; Saraf-Sinik, Inbar; Matosevich, Noa; Malan, Daniela; Brown, Bobbie J.; Dine, Julien; Levy, Rivka (2023-07-02). "A bistable inhibitory OptoGPCR for multiplexed optogenetic control of neural circuits". doi.org. doi:10.1101/2023.07.01.547328. Retrieved 2026-01-04.
- Lerner TN, Ye L, Deisseroth K (March 2016). "Communication in Neural Circuits: Tools, Opportunities, and Challenges". Cell. 164 (6): 1136–1150. doi:10.1016/j.cell.2016.02.027. PMC 5725393. PMID 26967281.
- Aravanis AM, Wang LP, Zhang F, Meltzer LA, Mogri MZ, Schneider MB, Deisseroth K (September 2007). "An optical neural interface: in vivo control of rodent motor cortex with integrated fiberoptic and optogenetic technology". Journal of Neural Engineering. 4 (3): S143 – S156. Bibcode:2007JNEng...4S.143A. doi:10.1088/1741-2560/4/3/S02. PMID 17873414. S2CID 1488394.
- Adamantidis AR, Zhang F, Aravanis AM, Deisseroth K, de Lecea L (November 2007). "Neural substrates of awakening probed with optogenetic control of hypocretin neurons". Nature. 450 (7168): 420–424. Bibcode:2007Natur.450..420A. doi:10.1038/nature06310. PMC 6744371. PMID 17943086.
- Gradinaru V, Thompson KR, Zhang F, Mogri M, Kay K, Schneider MB, Deisseroth K (December 2007). "Targeting and readout strategies for fast optical neural control in vitro and in vivo". The Journal of Neuroscience. 27 (52): 14231–14238. doi:10.1523/JNEUROSCI.3578-07.2007. PMC 6673457. PMID 18160630.
- Damestani Y, Reynolds CL, Szu J, Hsu MS, Kodera Y, Binder DK, et al. (November 2013). "Transparent nanocrystalline yttria-stabilized-zirconia calvarium prosthesis". Nanomedicine. 9 (8): 1135–1138. doi:10.1016/j.nano.2013.08.002. PMID 23969102. S2CID 14212180. • Explained by Mohan G (September 4, 2013). "A window to the brain? It's here, says UC Riverside team". Los Angeles Times.
- Legaria AA, Matikainen-Ankney BA, Yang B, Ahanonu B, Licholai JA, Parker JG, Kravitz AV (August 30, 2022). "Fiber photometry in striatum reflects primarily nonsomatic changes in calcium". Nature Neuroscience. 25 (9): 1124–1128. doi:10.1038/s41593-022-01152-z. PMC 10152879. PMID 36042311.
- Wentz CT, Bernstein JG, Monahan P, Guerra A, Rodriguez A, Boyden ES (August 2011). "A wirelessly powered and controlled device for optical neural control of freely-behaving animals". Journal of Neural Engineering. 8 (4) 046021. Bibcode:2011JNEng...8d6021W. doi:10.1088/1741-2560/8/4/046021. PMC 3151576. PMID 21701058.
- Pama EA, Colzato LS, Hommel B (2013-01-01). "Optogenetics as a neuromodulation tool in cognitive neuroscience". Frontiers in Psychology. 4: 610. doi:10.3389/fpsyg.2013.00610. PMC 3764402. PMID 24046763.
- Vierock, Johannes; Rodriguez-Rozada, Silvia; Dieter, Alexander; Pieper, Florian; Sims, Ruth; Tenedini, Federico; Bergs, Amelie C. F.; Bendifallah, Imane; Zhou, Fangmin; Zeitzschel, Nadja; Ahlbeck, Joachim (2021-07-26). "BiPOLES is an optogenetic tool developed for bidirectional dual-color control of neurons". Nature Communications. 12 (1): 4527. Bibcode:2021NatCo..12.4527V. doi:10.1038/s41467-021-24759-5. ISSN 2041-1723. PMC 8313717. PMID 34312384.
- Zhang F, Gradinaru V, Adamantidis AR, Durand R, Airan RD, de Lecea L, Deisseroth K (March 2010). "Optogenetic interrogation of neural circuits: technology for probing mammalian brain structures". Nature Protocols. 5 (3): 439–456. doi:10.1038/nprot.2009.226. PMC 4503465. PMID 20203662.
- Zeng H, Madisen L (2012-09-05). "Mouse transgenic approaches in optogenetics". Optogenetics: Tools for Controlling and Monitoring Neuronal Activity. Progress in Brain Research. Vol. 196. pp. 193–213. doi:10.1016/B978-0-444-59426-6.00010-0. ISBN 978-0-444-59426-6. PMC 3433654. PMID 22341327.
- Warden MR, Cardin JA, Deisseroth K (July 2014). "Optical neural interfaces". Annual Review of Biomedical Engineering. 16: 103–129. doi:10.1146/annurev-bioeng-071813-104733. PMC 4163158. PMID 25014785.
- Guru A, Post RJ, Ho YY, Warden MR (July 2015). "Making Sense of Optogenetics". The International Journal of Neuropsychopharmacology. 18 (11) pyv079. doi:10.1093/ijnp/pyv079. PMC 4756725. PMID 26209858.
- Kim CK, Yang SJ, Pichamoorthy N, Young NP, Kauvar I, Jennings JH, Lerner TN, Berndt A, Lee SY, Ramakrishnan C, Davidson TJ, Inoue M, Bito H, Deisseroth K (2016). "Simultaneous fast measurement of circuit dynamics at multiple sites across the mammalian brain". Nat Methods. 13 (4): 325–8. doi:10.1038/nmeth.3770. PMC 5717315. PMID 26878381.
- Cui G, Jun SB, Jin X, Luo G, Pham MD, Lovinger DM, et al. (June 2014). "Deep brain optical measurements of cell type-specific neural activity in behaving mice". Nature Protocols. 9 (6): 1213–1228. doi:10.1038/nprot.2014.080. PMC 4100551. PMID 24784819.
- Heitmann S, Rule M, Truccolo W, Ermentrout B (January 2017). "Optogenetic Stimulation Shifts the Excitability of Cerebral Cortex from Type I to Type II: Oscillation Onset and Wave Propagation". PLOS Computational Biology. 13 (1) e1005349. Bibcode:2017PLSCB..13E5349H. doi:10.1371/journal.pcbi.1005349. PMC 5295702. PMID 28118355.
- Zhang, Yan-Ping; Oertner, Thomas G (2007). "Optical induction of synaptic plasticity using a light-sensitive channel". Nature Methods. 4 (2): 139–141. doi:10.1038/nmeth988. ISSN 1548-7091. PMID 17195846. S2CID 17721823.
- Leergaard TB, Hilgetag CC, Sporns O (2012-05-01). "Mapping the connectome: multi-level analysis of brain connectivity". Frontiers in Neuroinformatics. 6: 14. doi:10.3389/fninf.2012.00014. PMC 3340894. PMID 22557964.
- Luboeinski J, Tchumatchenko T (September 2020). "Nonlinear response characteristics of neural networks and single neurons undergoing optogenetic excitation". Network Neuroscience. 4 (3): 852–870. doi:10.1162/netn_a_00154. PMC 7888483. PMID 33615093.
- Azees, Ajmal (December 2023). "Spread of activation and interaction between channels with multi-channel optogenetic stimulation in the mouse cochlea". Hearing Research. 440 108911. doi:10.1016/j.heares.2023.108911. PMID 37977051.
- Kravitz AV, Freeze BS, Parker PR, Kay K, Thwin MT, Deisseroth K, Kreitzer AC (July 2010). "Regulation of parkinsonian motor behaviours by optogenetic control of basal ganglia circuitry". Nature. 466 (7306): 622–626. Bibcode:2010Natur.466..622K. doi:10.1038/nature09159. PMC 3552484. PMID 20613723.
- Gradinaru V, Mogri M, Thompson KR, Henderson JM, Deisseroth K (April 2009). "Optical deconstruction of parkinsonian neural circuitry". Science. 324 (5925): 354–359. Bibcode:2009Sci...324..354G. CiteSeerX 10.1.1.368.668. doi:10.1126/science.1167093. PMC 6744370. PMID 19299587.
- Cardin JA, Carlén M, Meletis K, Knoblich U, Zhang F, Deisseroth K, et al. (June 2009). "Driving fast-spiking cells induces gamma rhythm and controls sensory responses". Nature. 459 (7247): 663–667. Bibcode:2009Natur.459..663C. doi:10.1038/nature08002. PMC 3655711. PMID 19396156.
- Sohal VS, Zhang F, Yizhar O, Deisseroth K (June 2009). "Parvalbumin neurons and gamma rhythms enhance cortical circuit performance". Nature. 459 (7247): 698–702. Bibcode:2009Natur.459..698S. doi:10.1038/nature07991. PMC 3969859. PMID 19396159.
- Tsai HC, Zhang F, Adamantidis A, Stuber GD, Bonci A, de Lecea L, Deisseroth K (May 2009). "Phasic firing in dopaminergic neurons is sufficient for behavioral conditioning". Science. 324 (5930): 1080–1084. Bibcode:2009Sci...324.1080T. doi:10.1126/science.1168878. PMC 5262197. PMID 19389999.
- Haubensak W, Kunwar PS, Cai H, Ciocchi S, Wall NR, Ponnusamy R, et al. (November 2010). "Genetic dissection of an amygdala microcircuit that gates conditioned fear". Nature. 468 (7321): 270–276. Bibcode:2010Natur.468..270H. doi:10.1038/nature09553. PMC 3597095. PMID 21068836.
- Johansen JP, Hamanaka H, Monfils MH, Behnia R, Deisseroth K, Blair HT, LeDoux JE (July 2010). "Optical activation of lateral amygdala pyramidal cells instructs associative fear learning". Proceedings of the National Academy of Sciences of the United States of America. 107 (28): 12692–12697. Bibcode:2010PNAS..10712692J. doi:10.1073/pnas.1002418107. PMC 2906568. PMID 20615999.
- Jasnow AM, Ehrlich DE, Choi DC, Dabrowska J, Bowers ME, McCullough KM, et al. (June 2013). "Thy1-expressing neurons in the basolateral amygdala may mediate fear inhibition". The Journal of Neuroscience. 33 (25): 10396–10404. doi:10.1523/JNEUROSCI.5539-12.2013. PMC 3685835. PMID 23785152.
- Dias BG, Banerjee SB, Goodman JV, Ressler KJ (June 2013). "Towards new approaches to disorders of fear and anxiety". Current Opinion in Neurobiology. 23 (3): 346–352. doi:10.1016/j.conb.2013.01.013. PMC 3672317. PMID 23402950.
- Karalis N, Dejean C, Chaudun F, Khoder S, Rozeske RR, Wurtz H, et al. (April 2016). "4-Hz oscillations synchronize prefrontal-amygdala circuits during fear behavior". Nature Neuroscience. 19 (4): 605–612. doi:10.1038/nn.4251. PMC 4843971. PMID 26878674.
- Shusterman R, Smear MC, Koulakov AA, Rinberg D (July 2011). "Precise olfactory responses tile the sniff cycle". Nature Neuroscience. 14 (8): 1039–1044. doi:10.1038/nn.2877. PMID 21765422. S2CID 5194595.
- Smith RS, Hu R, DeSouza A, Eberly CL, Krahe K, Chan W, Araneda RC (July 2015). "Differential Muscarinic Modulation in the Olfactory Bulb". The Journal of Neuroscience. 35 (30): 10773–10785. doi:10.1523/JNEUROSCI.0099-15.2015. PMC 4518052. PMID 26224860.
- Patterson MA, Lagier S, Carleton A (August 2013). "Odor representations in the olfactory bulb evolve after the first breath and persist as an odor afterimage". Proceedings of the National Academy of Sciences of the United States of America. 110 (35): E3340 – E3349. Bibcode:2013PNAS..110E3340P. doi:10.1073/pnas.1303873110. PMC 3761593. PMID 23918364.
- Tecuapetla F, Patel JC, Xenias H, English D, Tadros I, Shah F, et al. (May 2010). "Glutamatergic signaling by mesolimbic dopamine neurons in the nucleus accumbens". The Journal of Neuroscience. 30 (20): 7105–7110. doi:10.1523/JNEUROSCI.0265-10.2010. PMC 3842465. PMID 20484653.
- Cela E, McFarlan AR, Chung AJ, Wang T, Chierzi S, Murai KK, Sjöström PJ (March 2019). "An Optogenetic Kindling Model of Neocortical Epilepsy". Scientific Reports. 9 (1) 5236. Bibcode:2019NatSR...9.5236C. doi:10.1038/s41598-019-41533-2. PMC 6437216. PMID 30918286.
- Ryu B, Nagappan S, Santos-Valencia F, Lee P, Rodriguez E, Lackie M, et al. (April 2021). "Chronic loss of inhibition in piriform cortex following brief, daily optogenetic stimulation". Cell Reports. 35 (3) 109001. doi:10.1016/j.celrep.2021.109001. PMC 8102022. PMID 33882304.
- Bingen BO, Engels MC, Schalij MJ, Jangsangthong W, Neshati Z, Feola I, et al. (October 2014). "Light-induced termination of spiral wave arrhythmias by optogenetic engineering of atrial cardiomyocytes". Cardiovascular Research. 104 (1): 194–205. doi:10.1093/cvr/cvu179. PMID 25082848.
- Nussinovitch U, Gepstein L (July 2015). "Optogenetics for in vivo cardiac pacing and resynchronization therapies". Nature Biotechnology. 33 (7): 750–754. doi:10.1038/nbt.3268. PMID 26098449. S2CID 1794556.
- Nyns EC, Kip A, Bart CI, Plomp JJ, Zeppenfeld K, Schalij MJ, et al. (July 2017). "Optogenetic termination of ventricular arrhythmias in the whole heart: towards biological cardiac rhythm management". European Heart Journal. 38 (27): 2132–2136. doi:10.1093/eurheartj/ehw574. PMC 5837774. PMID 28011703.
- Bruegmann T, Boyle PM, Vogt CC, Karathanos TV, Arevalo HJ, Fleischmann BK, et al. (October 2016). "Optogenetic defibrillation terminates ventricular arrhythmia in mouse hearts and human simulations". The Journal of Clinical Investigation. 126 (10): 3894–3904. doi:10.1172/JCI88950. PMC 5096832. PMID 27617859.
- Crocini C, Ferrantini C, Coppini R, Scardigli M, Yan P, Loew LM, et al. (October 2016). "Optogenetics design of mechanistically-based stimulation patterns for cardiac defibrillation". Scientific Reports. 6 35628. Bibcode:2016NatSR...635628C. doi:10.1038/srep35628. PMC 5066272. PMID 27748433.
- Hernandez VH, Gehrt A, Reuter K, Jing Z, Jeschke M, Mendoza Schulz A, et al. (March 2014). "Optogenetic stimulation of the auditory pathway". The Journal of Clinical Investigation. 124 (3): 1114–1129. doi:10.1172/JCI69050. PMC 3934189. PMID 24509078.
- Keppeler D, Merino RM, Lopez de la Morena D, Bali B, Huet AT, Gehrt A, et al. (December 2018). "Ultrafast optogenetic stimulation of the auditory pathway by targeting-optimized Chronos". The EMBO Journal. 37 (24) e99649. doi:10.15252/embj.201899649. PMC 6293277. PMID 30396994.
- Mager T, Lopez de la Morena D, Senn V, Schlotte J, D Errico A, Feldbauer K, et al. (May 2018). "High frequency neural spiking and auditory signaling by ultrafast red-shifted optogenetics". Nature Communications. 9 (1) 1750. Bibcode:2018NatCo...9.1750M. doi:10.1038/s41467-018-04146-3. PMC 5931537. PMID 29717130.
- Moser T (October 2015). "Optogenetic stimulation of the auditory pathway for research and future prosthetics". Current Opinion in Neurobiology. 34: 29–36. doi:10.1016/j.conb.2015.01.004. PMID 25637880. S2CID 35199775.
- Lin JY, Knutsen PM, Muller A, Kleinfeld D, Tsien RY (October 2013). "ReaChR: a red-shifted variant of channelrhodopsin enables deep transcranial optogenetic excitation". Nature Neuroscience. 16 (10): 1499–1508. doi:10.1038/nn.3502. PMC 3793847. PMID 23995068.
- Matthews GA, Nieh EH, Vander Weele CM, Halbert SA, Pradhan RV, Yosafat AS, et al. (February 2016). "Dorsal Raphe Dopamine Neurons Represent the Experience of Social Isolation". Cell. 164 (4): 617–631. doi:10.1016/j.cell.2015.12.040. PMC 4752823. PMID 26871628.
- Klapoetke NC, Murata Y, Kim SS, Pulver SR, Birdsey-Benson A, Cho YK, et al. (March 2014). "Independent optical excitation of distinct neural populations". Nature Methods. 11 (3): 338–346. doi:10.1038/nmeth.2836. PMC 3943671. PMID 24509633.
- Berndt A, Yizhar O, Gunaydin LA, Hegemann P, Deisseroth K (February 2009). "Bi-stable neural state switches". Nature Neuroscience. 12 (2): 229–234. doi:10.1038/nn.2247. PMID 19079251. S2CID 15125498.
- Govorunova EG, Sineshchekov OA, Janz R, Liu X, Spudich JL (August 2015). "NEUROSCIENCE. Natural light-gated anion channels: A family of microbial rhodopsins for advanced optogenetics". Science. 349 (6248): 647–650. doi:10.1126/science.aaa7484. PMC 4764398. PMID 26113638.
- Mauss AS, Busch C, Borst A (October 2017). "Optogenetic Neuronal Silencing in Drosophila during Visual Processing". Scientific Reports. 7 (1) 13823. Bibcode:2017NatSR...713823M. doi:10.1038/s41598-017-14076-7. PMC 5653863. PMID 29061981.
- Portugues, Ruben; Severi, Kristen E; Wyart, Claire; Ahrens, Misha B (2013-02-01). "Optogenetics in a transparent animal: circuit function in the larval zebrafish". Current Opinion in Neurobiology. Neurogenetics. 23 (1): 119–126. doi:10.1016/j.conb.2012.11.001. ISSN 0959-4388. PMID 23246238. S2CID 19906279.
- Cande, Jessica; Namiki, Shigehiro; Qiu, Jirui; Korff, Wyatt; Card, Gwyneth M; Shaevitz, Joshua W; Stern, David L; Berman, Gordon J (2018-06-26). Scott, Kristin (ed.). "Optogenetic dissection of descending behavioral control in Drosophila". eLife. 7 e34275. doi:10.7554/eLife.34275. ISSN 2050-084X. PMC 6031430. PMID 29943729.
- DeAngelis, Brian D; Zavatone-Veth, Jacob A; Gonzalez-Suarez, Aneysis D; Clark, Damon A (2020-04-22). Calabrese, Ronald L (ed.). "Spatiotemporally precise optogenetic activation of sensory neurons in freely walking Drosophila". eLife. 9 e54183. doi:10.7554/eLife.54183. ISSN 2050-084X. PMC 7198233. PMID 32319425.
- Bidaye, Salil S.; Laturney, Meghan; Chang, Amy K.; Liu, Yuejiang; Bockemühl, Till; Büschges, Ansgar; Scott, Kristin (2020-11-11). "Two Brain Pathways Initiate Distinct Forward Walking Programs in Drosophila". Neuron. 108 (3): 469–485.e8. doi:10.1016/j.neuron.2020.07.032. ISSN 0896-6273. PMC 9435592. PMID 32822613. S2CID 221198570.
- Heiney, Shane A.; Kim, Jinsook; Augustine, George J.; Medina, Javier F. (2014-02-05). "Precise Control of Movement Kinematics by Optogenetic Inhibition of Purkinje Cell Activity". Journal of Neuroscience. 34 (6): 2321–2330. doi:10.1523/JNEUROSCI.4547-13.2014. ISSN 0270-6474. PMC 3913874. PMID 24501371.
- Solari N, Sviatkó K, Laszlovszky T, Hegedüs P, Hangya B (May 2018). "Open Source Tools for Temporally Controlled Rodent Behavior Suitable for Electrophysiology and Optogenetic Manipulations". Frontiers in Systems Neuroscience. 12 18. doi:10.3389/fnsys.2018.00018. PMC 5962774. PMID 29867383.
- Lin JY (January 2011). "A user's guide to channelrhodopsin variants: features, limitations and future developments". Experimental Physiology. 96 (1): 19–25. doi:10.1113/expphysiol.2009.051961. PMC 2995811. PMID 20621963.
- Grosenick, Logan; Marshel, James H.; Deisseroth, Karl (2015-04-08). "Closed-Loop and Activity-Guided Optogenetic Control". Neuron. 86 (1): 106–139. doi:10.1016/j.neuron.2015.03.034. ISSN 0896-6273. PMC 4775736. PMID 25856490.
- Armstrong, Caren; Krook-Magnuson, Esther; Oijala, Mikko; Soltesz, Ivan (2013). "Closed-loop optogenetic intervention in mice". Nature Protocols. 8 (8): 1475–1493. doi:10.1038/nprot.2013.080. ISSN 1750-2799. PMC 3988315. PMID 23845961.
- Kovács KA, O'Neill J, Schoenenberger P, Penttonen M, Ranguel Guerrero DK, Csicsvari J (19 Nov 2016). "Optogenetically Blocking Sharp Wave Ripple Events in Sleep Does Not Interfere with the Formation of Stable Spatial Representation in the CA1 Area of the Hippocampus". PLOS ONE. 11 (10) e0164675. Bibcode:2016PLoSO..1164675K. doi:10.1371/journal.pone.0164675. PMC 5070819. PMID 27760158.
- Valon L, Marín-Llauradó A, Wyatt T, Charras G, Trepat X (February 2017). "Optogenetic control of cellular forces and mechanotransduction". Nature Communications. 8 14396. Bibcode:2017NatCo...814396V. doi:10.1038/ncomms14396. PMC 5309899. PMID 28186127.
- Khamo JS, Krishnamurthy VV, Sharum SR, Mondal P, Zhang K (October 2017). "Applications of Optobiology in Intact Cells and Multicellular Organisms". Journal of Molecular Biology. 429 (20): 2999–3017. doi:10.1016/j.jmb.2017.08.015. PMID 28882542.
- Fenno L, Yizhar O, Deisseroth K (2011). "The development and application of optogenetics". Annual Review of Neuroscience. 34: 389–412. doi:10.1146/annurev-neuro-061010-113817. PMC 6699620. PMID 21692661.
- Wittmann T, Dema A, van Haren J (October 2020). "Lights, cytoskeleton, action: Optogenetic control of cell dynamics". Current Opinion in Cell Biology. 66. Elsevier Ltd.: 1–10. doi:10.1016/j.ceb.2020.03.003. PMC 7577957. PMID 32371345.
- Konermann S, Brigham MD, Trevino A, Hsu PD, Heidenreich M, Cong L, et al. (August 2013). "Optical control of mammalian endogenous transcription and epigenetic states". Nature. 500 (7463): 472–476. Bibcode:2013Natur.500..472K. doi:10.1038/nature12466. PMC 3856241. PMID 23877069.
- Leung DW, Otomo C, Chory J, Rosen MK (September 2008). "Genetically encoded photoswitching of actin assembly through the Cdc42-WASP-Arp2/3 complex pathway". Proceedings of the National Academy of Sciences of the United States of America. 105 (35): 12797–12802. Bibcode:2008PNAS..10512797L. doi:10.1073/pnas.0801232105. PMC 2525560. PMID 18728185.
- Toettcher JE, Gong D, Lim WA, Weiner OD (September 2011). "Light-based feedback for controlling intracellular signaling dynamics". Nature Methods. 8 (10): 837–839. doi:10.1038/nmeth.1700. PMC 3184382. PMID 21909100.
- Strickland D, Lin Y, Wagner E, Hope CM, Zayner J, Antoniou C, et al. (March 2012). "TULIPs: tunable, light-controlled interacting protein tags for cell biology". Nature Methods. 9 (4): 379–384. doi:10.1038/nmeth.1904. PMC 3444151. PMID 22388287.
- Idevall-Hagren O, Dickson EJ, Hille B, Toomre DK, De Camilli P (August 2012). "Optogenetic control of phosphoinositide metabolism". Proceedings of the National Academy of Sciences of the United States of America. 109 (35): E2316 – E2323. Bibcode:2012PNAS..109E2316I. doi:10.1073/pnas.1211305109. PMC 3435206. PMID 22847441.
- Bugaj LJ, Choksi AT, Mesuda CK, Kane RS, Schaffer DV (March 2013). "Optogenetic protein clustering and signaling activation in mammalian cells". Nature Methods. 10 (3): 249–252. doi:10.1038/nmeth.2360. PMID 23377377. S2CID 8737019.
- Lungu OI, Hallett RA, Choi EJ, Aiken MJ, Hahn KM, Kuhlman B (April 2012). "Designing photoswitchable peptides using the AsLOV2 domain". Chemistry & Biology. 19 (4): 507–517. doi:10.1016/j.chembiol.2012.02.006. PMC 3334866. PMID 22520757.
- Wu YI, Frey D, Lungu OI, Jaehrig A, Schlichting I, Kuhlman B, Hahn KM (September 2009). "A genetically encoded photoactivatable Rac controls the motility of living cells". Nature. 461 (7260): 104–108. Bibcode:2009Natur.461..104W. doi:10.1038/nature08241. PMC 2766670. PMID 19693014.
- Smart AD, Pache RA, Thomsen ND, Kortemme T, Davis GW, Wells JA (September 2017). "Engineering a light-activated caspase-3 for precise ablation of neurons in vivo". Proceedings of the National Academy of Sciences of the United States of America. 114 (39): E8174 – E8183. Bibcode:2017PNAS..114E8174S. doi:10.1073/pnas.1705064114. PMC 5625904. PMID 28893998.
- Dagliyan O, Tarnawski M, Chu PH, Shirvanyants D, Schlichting I, Dokholyan NV, Hahn KM (December 2016). "Engineering extrinsic disorder to control protein activity in living cells". Science. 354 (6318): 1441–1444. Bibcode:2016Sci...354.1441D. doi:10.1126/science.aah3404. PMC 5362825. PMID 27980211.
- Guntas G, Hallett RA, Zimmerman SP, Williams T, Yumerefendi H, Bear JE, Kuhlman B (January 2015). "Engineering an improved light-induced dimer (iLID) for controlling the localization and activity of signaling proteins". Proceedings of the National Academy of Sciences of the United States of America. 112 (1): 112–117. Bibcode:2015PNAS..112..112G. doi:10.1073/pnas.1417910112. PMC 4291625. PMID 25535392.
- Wang H, Vilela M, Winkler A, Tarnawski M, Schlichting I, Yumerefendi H, et al. (September 2016). "LOVTRAP: an optogenetic system for photoinduced protein dissociation". Nature Methods. 13 (9): 755–758. doi:10.1038/nmeth.3926. PMC 5137947. PMID 27427858.
- van Haren J, Charafeddine RA, Ettinger A, Wang H, Hahn KM, Wittmann T (March 2018). "Local control of intracellular microtubule dynamics by EB1 photodissociation". Nature Cell Biology. 20 (3). Nature Research.: 252–261. doi:10.1038/s41556-017-0028-5. PMC 5826794. PMID 29379139.
- Zhou XX, Chung HK, Lam AJ, Lin MZ (November 2012). "Optical control of protein activity by fluorescent protein domains". Science. 338 (6108): 810–814. Bibcode:2012Sci...338..810Z. doi:10.1126/science.1226854. PMC 3702057. PMID 23139335.
- Tischer D, Weiner OD (August 2014). "Illuminating cell signalling with optogenetic tools". Nature Reviews. Molecular Cell Biology. 15 (8): 551–558. doi:10.1038/nrm3837. PMC 4145075. PMID 25027655.
- Purvis JE, Lahav G (February 2013). "Encoding and decoding cellular information through signaling dynamics". Cell. 152 (5): 945–956. doi:10.1016/j.cell.2013.02.005. PMC 3707615. PMID 23452846.
- Santos SD, Verveer PJ, Bastiaens PI (March 2007). "Growth factor-induced MAPK network topology shapes Erk response determining PC-12 cell fate". Nature Cell Biology. 9 (3): 324–330. doi:10.1038/ncb1543. PMID 17310240. S2CID 31709706.
- Toettcher JE, Weiner OD, Lim WA (December 2013). "Using optogenetics to interrogate the dynamic control of signal transmission by the Ras/Erk module". Cell. 155 (6): 1422–1434. doi:10.1016/j.cell.2013.11.004. PMC 3925772. PMID 24315106.
- Huidobro N, Mendez-Fernandez A, Mendez-Balbuena I, Gutierrez R, Kristeva R, Manjarrez E (2017). "Brownian Optogenetic-Noise-Photostimulation on the Brain Amplifies Somatosensory-Evoked Field Potentials". Frontiers in Neuroscience. 11 464. doi:10.3389/fnins.2017.00464. PMC 5583167. PMID 28912671.
- Huidobro N, De la Torre-Valdovinos B, Mendez A, Treviño M, Arias-Carrion O, Chavez F, et al. (January 2018). "Optogenetic noise-photostimulation on the brain increases somatosensory spike firing responses". Neuroscience Letters. 664: 51–57. doi:10.1016/j.neulet.2017.11.004. PMID 29128628. S2CID 3370851.
- Mabil P, Huidobro N, Torres-Ramirez O, Flores-Hernandez J, Flores A, Gutierrez R, Manjarrez E (2020). "Noisy Light Augments the Na+ Current in Somatosensory Pyramidal Neurons of Optogenetic Transgenic Mice". Frontiers in Neuroscience. 14 490. doi:10.3389/fnins.2020.00490. PMC 7263390. PMID 32528244.
- Reiner A, Isacoff EY (October 2013). "The Brain Prize 2013: the optogenetics revolution". Trends in Neurosciences. 36 (10): 557–560. doi:10.1016/j.tins.2013.08.005. PMID 24054067. S2CID 205404606.
ekfs.de (Global: low place; English: low place)
escholarship.org (Global: 1,523rd place; English: 976th place)
- Damestani Y, Reynolds CL, Szu J, Hsu MS, Kodera Y, Binder DK, et al. (November 2013). "Transparent nanocrystalline yttria-stabilized-zirconia calvarium prosthesis". Nanomedicine. 9 (8): 1135–1138. doi:10.1016/j.nano.2013.08.002. PMID 23969102. S2CID 14212180. • Explained by Mohan G (September 4, 2013). "A window to the brain? It's here, says UC Riverside team". Los Angeles Times.
frs-fnrs.be (Global: low place; English: low place)
- "InBev-Baillet Latour International Health Prize" (PDF). Fonds de la Recherche Scientifique - FNRS.
gensat.org (Global: low place; English: low place)
- GENSAT brain project, http://www.gensat.org/index.html
github.com (Global: 383rd place; English: 320th place)
handle.net (Global: 102nd place; English: 76th place)
hdl.handle.net
- Sierra YA, Rost B, Oldani S, Schneider-Warme F, Seifert R, Schmitz D, Hegemann P (November 2018). "Potassium channel-based two component optogenetic tool for silencing of excitable cells". Biophysical Journal. 114 (3): 668a. Bibcode:2018BpJ...114..668A. doi:10.1016/j.bpj.2017.11.3607. hdl:21.11116/0000-0003-4AEF-E.
harvard.edu (Global: 18th place; English: 17th place)
ui.adsabs.harvard.edu
- Liu X, Ramirez S, Pang PT, Puryear CB, Govindarajan A, Deisseroth K, Tonegawa S (March 2012). "Optogenetic stimulation of a hippocampal engram activates fear memory recall". Nature. 484 (7394): 381–385. Bibcode:2012Natur.484..381L. doi:10.1038/nature11028. PMC 3331914. PMID 22441246.
- Feng, Kai; Sen, Rajyashree; Minegishi, Ryo; Dübbert, Michael; Bockemühl, Till; Büschges, Ansgar; Dickson, Barry J. (2020-12-02). "Distributed control of motor circuits for backward walking in Drosophila". Nature Communications. 11 (1): 6166. Bibcode:2020NatCo..11.6166F. doi:10.1038/s41467-020-19936-x. ISSN 2041-1723. PMC 7710706. PMID 33268800. S2CID 227255627.
- Chen, Chenghao; Agrawal, Sweta; Mark, Brandon; Mamiya, Akira; Sustar, Anne; Phelps, Jasper S.; Lee, Wei-Chung Allen; Dickson, Barry J.; Card, Gwyneth M.; Tuthill, John C. (2021-12-06). "Functional architecture of neural circuits for leg proprioception in Drosophila". Current Biology. 31 (23): 5163–5175.e7. Bibcode:2021CBio...31E5163C. doi:10.1016/j.cub.2021.09.035. ISSN 0960-9822. PMC 8665017. PMID 34637749.
- News Staff (December 2010). "Insights of the decade. Stepping away from the trees for a look at the forest. Introduction". Science. 330 (6011): 1612–1613. Bibcode:2010Sci...330.1612.. doi:10.1126/science.330.6011.1612. PMID 21163985. S2CID 206593135.
- Hoffmann A, Hildebrandt V, Heberle J, Büldt G (September 1994). "Photoactive mitochondria: in vivo transfer of a light-driven proton pump into the inner mitochondrial membrane of Schizosaccharomyces pombe". Proceedings of the National Academy of Sciences of the United States of America. 91 (20): 9367–9371. Bibcode:1994PNAS...91.9367H. doi:10.1073/pnas.91.20.9367. PMC 44813. PMID 7937771.
- Zemelman BV, Nesnas N, Lee GA, Miesenbock G (February 2003). "Photochemical gating of heterologous ion channels: remote control over genetically designated populations of neurons". Proceedings of the National Academy of Sciences of the United States of America. 100 (3): 1352–1357. Bibcode:2003PNAS..100.1352Z. doi:10.1073/pnas.242738899. PMC 298776. PMID 12540832.
- Güler AD, Rainwater A, Parker JG, Jones GL, Argilli E, Arenkiel BR, et al. (March 2012). "Transient activation of specific neurons in mice by selective expression of the capsaicin receptor". Nature Communications. 3 746. Bibcode:2012NatCo...3..746G. doi:10.1038/ncomms1749. PMC 3592340. PMID 22434189.
- Nagel G, Szellas T, Huhn W, Kateriya S, Adeishvili N, Berthold P, et al. (November 2003). "Channelrhodopsin-2, a directly light-gated cation-selective membrane channel". Proceedings of the National Academy of Sciences of the United States of America. 100 (24): 13940–13945. Bibcode:2003PNAS..10013940N. doi:10.1073/pnas.1936192100. PMC 283525. PMID 14615590.
- Harz H, Hegemann P (1991-06-06). "Rhodopsin-regulated calcium currents in Chlamydomonas". Nature. 351 (6326): 489–491. Bibcode:1991Natur.351..489H. doi:10.1038/351489a0. S2CID 4309593.
- Nagel G, Ollig D, Fuhrmann M, Kateriya S, Musti AM, Bamberg E, Hegemann P (June 2002). "Channelrhodopsin-1: a light-gated proton channel in green algae". Science. 296 (5577): 2395–2398. Bibcode:2002Sci...296.2395N. doi:10.1126/science.1072068. PMID 12089443. S2CID 206506942.
- Li X, Gutierrez DV, Hanson MG, Han J, Mark MD, Chiel H, et al. (December 2005). "Fast noninvasive activation and inhibition of neural and network activity by vertebrate rhodopsin and green algae channelrhodopsin". Proceedings of the National Academy of Sciences of the United States of America. 102 (49): 17816–17821. Bibcode:2005PNAS..10217816L. doi:10.1073/pnas.0509030102. PMC 1292990. PMID 16306259.
- Nagel G, Brauner M, Liewald JF, Adeishvili N, Bamberg E, Gottschalk A (December 2005). "Light activation of channelrhodopsin-2 in excitable cells of Caenorhabditis elegans triggers rapid behavioral responses". Current Biology. 15 (24): 2279–2284. Bibcode:2005CBio...15.2279N. doi:10.1016/j.cub.2005.11.032. PMID 16360690. S2CID 7036529.
- Han X, Boyden ES (March 2007). "Multiple-color optical activation, silencing, and desynchronization of neural activity, with single-spike temporal resolution". PLOS ONE. 2 (3) e299. Public Library of Science. Bibcode:2007PLoSO...2..299H. doi:10.1371/journal.pone.0000299. OCLC 678618519. PMC 1808431. PMID 17375185.
- Zhang F, Wang LP, Brauner M, Liewald JF, Kay K, Watzke N, et al. (April 2007). "Multimodal fast optical interrogation of neural circuitry". Nature. 446 (7136): 633–639. Bibcode:2007Natur.446..633Z. doi:10.1038/nature05744. PMID 17410168. S2CID 4415339.
- Gao S, Nagpal J, Schneider MW, Kozjak-Pavlovic V, Nagel G, Gottschalk A (September 2015). "Optogenetic manipulation of cGMP in cells and animals by the tightly light-regulated guanylyl-cyclase opsin CyclOp". Nature Communications. 6 (1) 8046. Bibcode:2015NatCo...6.8046G. doi:10.1038/ncomms9046. PMC 4569695. PMID 26345128.
- Baratta MV, Nakamura S, Dobelis P, Pomrenze MB, Dolzani SD, Cooper DC (2 April 2012). "Optogenetic control of genetically-targeted pyramidal neuron activity in prefrontal cortex" (PDF). Nature Precedings. arXiv:1204.0710. Bibcode:2012arXiv1204.0710B. doi:10.1038/npre.2012.7102.1. S2CID 31641314.
- Husson SJ, Liewald JF, Schultheis C, Stirman JN, Lu H, Gottschalk A (2012). Samuel A (ed.). "Microbial light-activatable proton pumps as neuronal inhibitors to functionally dissect neuronal networks in C. elegans". PLOS ONE. 7 (7) e40937. Bibcode:2012PLoSO...740937H. doi:10.1371/journal.pone.0040937. PMC 3397962. PMID 22815873.
- Sierra YA, Rost B, Oldani S, Schneider-Warme F, Seifert R, Schmitz D, Hegemann P (November 2018). "Potassium channel-based two component optogenetic tool for silencing of excitable cells". Biophysical Journal. 114 (3): 668a. Bibcode:2018BpJ...114..668A. doi:10.1016/j.bpj.2017.11.3607. hdl:21.11116/0000-0003-4AEF-E.
- Witten IB, Lin SC, Brodsky M, Prakash R, Diester I, Anikeeva P, et al. (December 2010). "Cholinergic interneurons control local circuit activity and cocaine conditioning". Science. 330 (6011): 1677–1681. Bibcode:2010Sci...330.1677W. doi:10.1126/science.1193771. PMC 3142356. PMID 21164015.
- Airan RD, Thompson KR, Fenno LE, Bernstein H, Deisseroth K (April 2009). "Temporally precise in vivo control of intracellular signalling". Nature. 458 (7241): 1025–1029. Bibcode:2009Natur.458.1025A. doi:10.1038/nature07926. PMID 19295515. S2CID 4401796.
- Levskaya A, Weiner OD, Lim WA, Voigt CA (October 2009). "Spatiotemporal control of cell signalling using a light-switchable protein interaction". Nature. 461 (7266): 997–1001. Bibcode:2009Natur.461..997L. doi:10.1038/nature08446. PMC 2989900. PMID 19749742.
- Wu YI, Frey D, Lungu OI, Jaehrig A, Schlichting I, Kuhlman B, Hahn KM (September 2009). "A genetically encoded photoactivatable Rac controls the motility of living cells". Nature. 461 (7260): 104–108. Bibcode:2009Natur.461..104W. doi:10.1038/nature08241. PMC 2766670. PMID 19693014.
- Aravanis AM, Wang LP, Zhang F, Meltzer LA, Mogri MZ, Schneider MB, Deisseroth K (September 2007). "An optical neural interface: in vivo control of rodent motor cortex with integrated fiberoptic and optogenetic technology". Journal of Neural Engineering. 4 (3): S143 – S156. Bibcode:2007JNEng...4S.143A. doi:10.1088/1741-2560/4/3/S02. PMID 17873414. S2CID 1488394.
- Adamantidis AR, Zhang F, Aravanis AM, Deisseroth K, de Lecea L (November 2007). "Neural substrates of awakening probed with optogenetic control of hypocretin neurons". Nature. 450 (7168): 420–424. Bibcode:2007Natur.450..420A. doi:10.1038/nature06310. PMC 6744371. PMID 17943086.
- Wentz CT, Bernstein JG, Monahan P, Guerra A, Rodriguez A, Boyden ES (August 2011). "A wirelessly powered and controlled device for optical neural control of freely-behaving animals". Journal of Neural Engineering. 8 (4) 046021. Bibcode:2011JNEng...8d6021W. doi:10.1088/1741-2560/8/4/046021. PMC 3151576. PMID 21701058.
- Vierock, Johannes; Rodriguez-Rozada, Silvia; Dieter, Alexander; Pieper, Florian; Sims, Ruth; Tenedini, Federico; Bergs, Amelie C. F.; Bendifallah, Imane; Zhou, Fangmin; Zeitzschel, Nadja; Ahlbeck, Joachim (2021-07-26). "BiPOLES is an optogenetic tool developed for bidirectional dual-color control of neurons". Nature Communications. 12 (1): 4527. Bibcode:2021NatCo..12.4527V. doi:10.1038/s41467-021-24759-5. ISSN 2041-1723. PMC 8313717. PMID 34312384.
- Heitmann S, Rule M, Truccolo W, Ermentrout B (January 2017). "Optogenetic Stimulation Shifts the Excitability of Cerebral Cortex from Type I to Type II: Oscillation Onset and Wave Propagation". PLOS Computational Biology. 13 (1) e1005349. Bibcode:2017PLSCB..13E5349H. doi:10.1371/journal.pcbi.1005349. PMC 5295702. PMID 28118355.
- Kravitz AV, Freeze BS, Parker PR, Kay K, Thwin MT, Deisseroth K, Kreitzer AC (July 2010). "Regulation of parkinsonian motor behaviours by optogenetic control of basal ganglia circuitry". Nature. 466 (7306): 622–626. Bibcode:2010Natur.466..622K. doi:10.1038/nature09159. PMC 3552484. PMID 20613723.
- Gradinaru V, Mogri M, Thompson KR, Henderson JM, Deisseroth K (April 2009). "Optical deconstruction of parkinsonian neural circuitry". Science. 324 (5925): 354–359. Bibcode:2009Sci...324..354G. CiteSeerX 10.1.1.368.668. doi:10.1126/science.1167093. PMC 6744370. PMID 19299587.
- Cardin JA, Carlén M, Meletis K, Knoblich U, Zhang F, Deisseroth K, et al. (June 2009). "Driving fast-spiking cells induces gamma rhythm and controls sensory responses". Nature. 459 (7247): 663–667. Bibcode:2009Natur.459..663C. doi:10.1038/nature08002. PMC 3655711. PMID 19396156.
- Sohal VS, Zhang F, Yizhar O, Deisseroth K (June 2009). "Parvalbumin neurons and gamma rhythms enhance cortical circuit performance". Nature. 459 (7247): 698–702. Bibcode:2009Natur.459..698S. doi:10.1038/nature07991. PMC 3969859. PMID 19396159.
- Tsai HC, Zhang F, Adamantidis A, Stuber GD, Bonci A, de Lecea L, Deisseroth K (May 2009). "Phasic firing in dopaminergic neurons is sufficient for behavioral conditioning". Science. 324 (5930): 1080–1084. Bibcode:2009Sci...324.1080T. doi:10.1126/science.1168878. PMC 5262197. PMID 19389999.
- Haubensak W, Kunwar PS, Cai H, Ciocchi S, Wall NR, Ponnusamy R, et al. (November 2010). "Genetic dissection of an amygdala microcircuit that gates conditioned fear". Nature. 468 (7321): 270–276. Bibcode:2010Natur.468..270H. doi:10.1038/nature09553. PMC 3597095. PMID 21068836.
- Johansen JP, Hamanaka H, Monfils MH, Behnia R, Deisseroth K, Blair HT, LeDoux JE (July 2010). "Optical activation of lateral amygdala pyramidal cells instructs associative fear learning". Proceedings of the National Academy of Sciences of the United States of America. 107 (28): 12692–12697. Bibcode:2010PNAS..10712692J. doi:10.1073/pnas.1002418107. PMC 2906568. PMID 20615999.
- Patterson MA, Lagier S, Carleton A (August 2013). "Odor representations in the olfactory bulb evolve after the first breath and persist as an odor afterimage". Proceedings of the National Academy of Sciences of the United States of America. 110 (35): E3340 – E3349. Bibcode:2013PNAS..110E3340P. doi:10.1073/pnas.1303873110. PMC 3761593. PMID 23918364.
- Cela E, McFarlan AR, Chung AJ, Wang T, Chierzi S, Murai KK, Sjöström PJ (March 2019). "An Optogenetic Kindling Model of Neocortical Epilepsy". Scientific Reports. 9 (1) 5236. Bibcode:2019NatSR...9.5236C. doi:10.1038/s41598-019-41533-2. PMC 6437216. PMID 30918286.
- Crocini C, Ferrantini C, Coppini R, Scardigli M, Yan P, Loew LM, et al. (October 2016). "Optogenetics design of mechanistically-based stimulation patterns for cardiac defibrillation". Scientific Reports. 6 35628. Bibcode:2016NatSR...635628C. doi:10.1038/srep35628. PMC 5066272. PMID 27748433.
- Mager T, Lopez de la Morena D, Senn V, Schlotte J, D Errico A, Feldbauer K, et al. (May 2018). "High frequency neural spiking and auditory signaling by ultrafast red-shifted optogenetics". Nature Communications. 9 (1) 1750. Bibcode:2018NatCo...9.1750M. doi:10.1038/s41467-018-04146-3. PMC 5931537. PMID 29717130.
- Mauss AS, Busch C, Borst A (October 2017). "Optogenetic Neuronal Silencing in Drosophila during Visual Processing". Scientific Reports. 7 (1) 13823. Bibcode:2017NatSR...713823M. doi:10.1038/s41598-017-14076-7. PMC 5653863. PMID 29061981.
- Kovács KA, O'Neill J, Schoenenberger P, Penttonen M, Ranguel Guerrero DK, Csicsvari J (19 Nov 2016). "Optogenetically Blocking Sharp Wave Ripple Events in Sleep Does Not Interfere with the Formation of Stable Spatial Representation in the CA1 Area of the Hippocampus". PLOS ONE. 11 (10) e0164675. Bibcode:2016PLoSO..1164675K. doi:10.1371/journal.pone.0164675. PMC 5070819. PMID 27760158.
- Valon L, Marín-Llauradó A, Wyatt T, Charras G, Trepat X (February 2017). "Optogenetic control of cellular forces and mechanotransduction". Nature Communications. 8 14396. Bibcode:2017NatCo...814396V. doi:10.1038/ncomms14396. PMC 5309899. PMID 28186127.
- Konermann S, Brigham MD, Trevino A, Hsu PD, Heidenreich M, Cong L, et al. (August 2013). "Optical control of mammalian endogenous transcription and epigenetic states". Nature. 500 (7463): 472–476. Bibcode:2013Natur.500..472K. doi:10.1038/nature12466. PMC 3856241. PMID 23877069.
- Leung DW, Otomo C, Chory J, Rosen MK (September 2008). "Genetically encoded photoswitching of actin assembly through the Cdc42-WASP-Arp2/3 complex pathway". Proceedings of the National Academy of Sciences of the United States of America. 105 (35): 12797–12802. Bibcode:2008PNAS..10512797L. doi:10.1073/pnas.0801232105. PMC 2525560. PMID 18728185.
- Idevall-Hagren O, Dickson EJ, Hille B, Toomre DK, De Camilli P (August 2012). "Optogenetic control of phosphoinositide metabolism". Proceedings of the National Academy of Sciences of the United States of America. 109 (35): E2316 – E2323. Bibcode:2012PNAS..109E2316I. doi:10.1073/pnas.1211305109. PMC 3435206. PMID 22847441.
- Wu YI, Frey D, Lungu OI, Jaehrig A, Schlichting I, Kuhlman B, Hahn KM (September 2009). "A genetically encoded photoactivatable Rac controls the motility of living cells". Nature. 461 (7260): 104–108. Bibcode:2009Natur.461..104W. doi:10.1038/nature08241. PMC 2766670. PMID 19693014.
- Smart AD, Pache RA, Thomsen ND, Kortemme T, Davis GW, Wells JA (September 2017). "Engineering a light-activated caspase-3 for precise ablation of neurons in vivo". Proceedings of the National Academy of Sciences of the United States of America. 114 (39): E8174 – E8183. Bibcode:2017PNAS..114E8174S. doi:10.1073/pnas.1705064114. PMC 5625904. PMID 28893998.
- Dagliyan O, Tarnawski M, Chu PH, Shirvanyants D, Schlichting I, Dokholyan NV, Hahn KM (December 2016). "Engineering extrinsic disorder to control protein activity in living cells". Science. 354 (6318): 1441–1444. Bibcode:2016Sci...354.1441D. doi:10.1126/science.aah3404. PMC 5362825. PMID 27980211.
- Guntas G, Hallett RA, Zimmerman SP, Williams T, Yumerefendi H, Bear JE, Kuhlman B (January 2015). "Engineering an improved light-induced dimer (iLID) for controlling the localization and activity of signaling proteins". Proceedings of the National Academy of Sciences of the United States of America. 112 (1): 112–117. Bibcode:2015PNAS..112..112G. doi:10.1073/pnas.1417910112. PMC 4291625. PMID 25535392.
- Zhou XX, Chung HK, Lam AJ, Lin MZ (November 2012). "Optical control of protein activity by fluorescent protein domains". Science. 338 (6108): 810–814. Bibcode:2012Sci...338..810Z. doi:10.1126/science.1226854. PMC 3702057. PMID 23139335.
heinekenprizes.org (Global: low place; English: low place)
hfsp.org (Global: low place; English: low place)
hu-berlin.de (Global: 2,869th place; English: 4,557th place)
edoc.hu-berlin.de
- Schröder-Lang S, Schwärzel M, Seifert R, Strünker T, Kateriya S, Looser J, et al. (January 2007). "Fast manipulation of cellular cAMP level by light in vivo". Nature Methods. 4 (1): 39–42. doi:10.1038/nmeth975. PMID 17128267. S2CID 10616442.
jeantet.ch (Global: low place; English: low place)
- "Louis-Jeantet Prize". Archived from the original on 2020-03-27. Retrieved 2020-07-22.
jneurosci.org (Global: low place; English: low place)
- Heiney, Shane A.; Kim, Jinsook; Augustine, George J.; Medina, Javier F. (2014-02-05). "Precise Control of Movement Kinematics by Optogenetic Inhibition of Purkinje Cell Activity". Journal of Neuroscience. 34 (6): 2321–2330. doi:10.1523/JNEUROSCI.4547-13.2014. ISSN 0270-6474. PMC 3913874. PMID 24501371.
kyotoprize.org (Global: low place; English: low place)
latimes.com (Global: 22nd place; English: 19th place)
- Damestani Y, Reynolds CL, Szu J, Hsu MS, Kodera Y, Binder DK, et al. (November 2013). "Transparent nanocrystalline yttria-stabilized-zirconia calvarium prosthesis". Nanomedicine. 9 (8): 1135–1138. doi:10.1016/j.nano.2013.08.002. PMID 23969102. S2CID 14212180. • Explained by Mohan G (September 4, 2013). "A window to the brain? It's here, says UC Riverside team". Los Angeles Times.
mightexbio.com (Global: low place; English: low place)
- "The Evolution in Freely-Behaving Imaging and Optogenetics Technology". OASIS Implant. Mightex. Retrieved 2021-06-03.
mpg.de (Global: 1,624th place; English: 1,592nd place)
nature.com (Global: 234th place; English: 397th place)
precedings.nature.com
- Baratta MV, Nakamura S, Dobelis P, Pomrenze MB, Dolzani SD, Cooper DC (2 April 2012). "Optogenetic control of genetically-targeted pyramidal neuron activity in prefrontal cortex" (PDF). Nature Precedings. arXiv:1204.0710. Bibcode:2012arXiv1204.0710B. doi:10.1038/npre.2012.7102.1. S2CID 31641314.
nature.com
- Zhang, Yan-Ping; Oertner, Thomas G (2007). "Optical induction of synaptic plasticity using a light-sensitive channel". Nature Methods. 4 (2): 139–141. doi:10.1038/nmeth988. ISSN 1548-7091. PMID 17195846. S2CID 17721823.
nih.gov (Global: 4th place; English: 4th place)
pubmed.ncbi.nlm.nih.gov
- Tsien JZ (2016). "Cre-Lox Neurogenetics: 20 Years of Versatile Applications in Brain Research and Counting…". Frontiers in Genetics. 7: 19. doi:10.3389/fgene.2016.00019. PMC 4759636. PMID 26925095.
- Tsien JZ, Chen DF, Gerber D, Tom C, Mercer EH, Anderson DJ, et al. (December 1996). "Subregion- and cell type-restricted gene knockout in mouse brain". Cell. 87 (7): 1317–26. doi:10.1016/s0092-8674(00)81826-7. PMID 8980237.
- Shimizu-Sato S, Huq E, Tepperman JM, Quail PH (October 2002). "A light-switchable gene promoter system". Nature Biotechnology. 20 (10): 1041–1044. doi:10.1038/nbt734. PMID 12219076. S2CID 24914960.
- Guo ZV, Li N, Huber D, Ophir E, Gutnisky D, Ting JT, et al. (January 2014). "Flow of cortical activity underlying a tactile decision in mice". Neuron. 81 (1): 179–194. doi:10.1016/j.neuron.2013.10.020. PMC 3984938. PMID 24361077.
- Lak A, Okun M, Moss MM, Gurnani H, Farrell K, Wells MJ, et al. (February 2020). "Dopaminergic and Prefrontal Basis of Learning from Sensory Confidence and Reward Value". Neuron. 105 (4): 700–711.e6. doi:10.1016/j.neuron.2019.11.018. PMC 7031700. PMID 31859030.
- Liu X, Ramirez S, Pang PT, Puryear CB, Govindarajan A, Deisseroth K, Tonegawa S (March 2012). "Optogenetic stimulation of a hippocampal engram activates fear memory recall". Nature. 484 (7394): 381–385. Bibcode:2012Natur.484..381L. doi:10.1038/nature11028. PMC 3331914. PMID 22441246.
- Tanaka R, Higuchi T, Kohatsu S, Sato K, Yamamoto D (November 2017). "Optogenetic Activation of the fruitless-Labeled Circuitry in Drosophila subobscura Males Induces Mating Motor Acts". The Journal of Neuroscience. 37 (48): 11662–11674. doi:10.1523/JNEUROSCI.1943-17.2017. PMC 6705751. PMID 29109241.
- Stamatakis AM, Stuber GD (November 2012). "Optogenetic strategies to dissect the neural circuits that underlie reward and addiction". Cold Spring Harbor Perspectives in Medicine. 2 (11) a011924. doi:10.1101/cshperspect.a011924. PMC 3543095. PMID 23043156.
- Musso, Pierre-Yves; Junca, Pierre; Jelen, Meghan; Feldman-Kiss, Damian; Zhang, Han; Chan, Rachel CW; Gordon, Michael D (2019-07-19). Ramaswami, Mani; Dulac, Catherine (eds.). "Closed-loop optogenetic activation of peripheral or central neurons modulates feeding in freely moving Drosophila". eLife. 8 e45636. doi:10.7554/eLife.45636. ISSN 2050-084X. PMC 6668987. PMID 31322499.
- Feng, Kai; Sen, Rajyashree; Minegishi, Ryo; Dübbert, Michael; Bockemühl, Till; Büschges, Ansgar; Dickson, Barry J. (2020-12-02). "Distributed control of motor circuits for backward walking in Drosophila". Nature Communications. 11 (1): 6166. Bibcode:2020NatCo..11.6166F. doi:10.1038/s41467-020-19936-x. ISSN 2041-1723. PMC 7710706. PMID 33268800. S2CID 227255627.
- Sahel JA, Boulanger-Scemama E, Pagot C, Arleo A, Galluppi F, Martel JN, et al. (July 2021). "Partial recovery of visual function in a blind patient after optogenetic therapy". Nature Medicine. 27 (7): 1223–1229. doi:10.1038/s41591-021-01351-4. PMID 34031601.
- Lim, Diana; LeDue, Jeffrey; Mohajerani, Majid; Vanni, Matthieu; Murphy, Timothy (2013). "Optogenetic approaches for functional mouse brain mapping". Frontiers in Neuroscience. 7: 54. doi:10.3389/fnins.2013.00054. ISSN 1662-453X. PMC 3622058. PMID 23596383.
- Lee, Candice; Lavoie, Andreanne; Liu, Jiashu; Chen, Simon X.; Liu, Bao-hua (2020). "Light Up the Brain: The Application of Optogenetics in Cell-Type Specific Dissection of Mouse Brain Circuits". Frontiers in Neural Circuits. 14 18. doi:10.3389/fncir.2020.00018. ISSN 1662-5110. PMC 7193678. PMID 32390806.
- Franconville, Romain; Beron, Celia; Jayaraman, Vivek (2018-08-20). VijayRaghavan, K; Scott, Kristin; Heinze, Stanley (eds.). "Building a functional connectome of the Drosophila central complex". eLife. 7 e37017. doi:10.7554/eLife.37017. ISSN 2050-084X. PMC 6150698. PMID 30124430.
- Chen, Chenghao; Agrawal, Sweta; Mark, Brandon; Mamiya, Akira; Sustar, Anne; Phelps, Jasper S.; Lee, Wei-Chung Allen; Dickson, Barry J.; Card, Gwyneth M.; Tuthill, John C. (2021-12-06). "Functional architecture of neural circuits for leg proprioception in Drosophila". Current Biology. 31 (23): 5163–5175.e7. Bibcode:2021CBio...31E5163C. doi:10.1016/j.cub.2021.09.035. ISSN 0960-9822. PMC 8665017. PMID 34637749.
- Primer on Optogenetics: Pastrana E (2010). "Optogenetics: Controlling cell function with light". Nature Methods. 8 (1): 24–25. doi:10.1038/nmeth.f.323. S2CID 5808517.
Editorial: "Method of the Year 2010". Nature Methods. 8 (1): 1. 2010. doi:10.1038/nmeth.f.321.
Commentary: Deisseroth K (January 2011). "Optogenetics". Nature Methods. 8 (1): 26–29. doi:10.1038/nmeth.f.324. PMC 6814250. PMID 21191368. - News Staff (December 2010). "Insights of the decade. Stepping away from the trees for a look at the forest. Introduction". Science. 330 (6011): 1612–1613. Bibcode:2010Sci...330.1612.. doi:10.1126/science.330.6011.1612. PMID 21163985. S2CID 206593135.
- Crick F (December 1999). "The impact of molecular biology on neuroscience". Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 354 (1392): 2021–2025. doi:10.1098/rstb.1999.0541. PMC 1692710. PMID 10670022.
- Hoffmann A, Hildebrandt V, Heberle J, Büldt G (September 1994). "Photoactive mitochondria: in vivo transfer of a light-driven proton pump into the inner mitochondrial membrane of Schizosaccharomyces pombe". Proceedings of the National Academy of Sciences of the United States of America. 91 (20): 9367–9371. Bibcode:1994PNAS...91.9367H. doi:10.1073/pnas.91.20.9367. PMC 44813. PMID 7937771.
- Nagel, G.; Möckel, B.; Büldt, G.; Bamberg, E. (1995-12-18). "Functional expression of bacteriorhodopsin in oocytes allows direct measurement of voltage dependence of light induced H+ pumping". FEBS Letters. 377 (2): 263–266. doi:10.1016/0014-5793(95)01356-3. ISSN 0014-5793. PMID 8543064.
- Zemelman BV, Lee GA, Ng M, Miesenböck G (January 2002). "Selective photostimulation of genetically chARGed neurons". Neuron. 33 (1): 15–22. doi:10.1016/S0896-6273(01)00574-8. PMID 11779476. S2CID 16391269.
- Zemelman BV, Nesnas N, Lee GA, Miesenbock G (February 2003). "Photochemical gating of heterologous ion channels: remote control over genetically designated populations of neurons". Proceedings of the National Academy of Sciences of the United States of America. 100 (3): 1352–1357. Bibcode:2003PNAS..100.1352Z. doi:10.1073/pnas.242738899. PMC 298776. PMID 12540832.
- Banghart M, Borges K, Isacoff E, Trauner D, Kramer RH (December 2004). "Light-activated ion channels for remote control of neuronal firing". Nature Neuroscience. 7 (12): 1381–1386. doi:10.1038/nn1356. PMC 1447674. PMID 15558062.
- Volgraf M, Gorostiza P, Numano R, Kramer RH, Isacoff EY, Trauner D (January 2006). "Allosteric control of an ionotropic glutamate receptor with an optical switch". Nature Chemical Biology. 2 (1): 47–52. doi:10.1038/nchembio756. PMC 1447676. PMID 16408092.
- Arenkiel BR, Klein ME, Davison IG, Katz LC, Ehlers MD (April 2008). "Genetic control of neuronal activity in mice conditionally expressing TRPV1". Nature Methods. 5 (4): 299–302. doi:10.1038/nmeth.1190. PMC 3127246. PMID 18327266.
- Güler AD, Rainwater A, Parker JG, Jones GL, Argilli E, Arenkiel BR, et al. (March 2012). "Transient activation of specific neurons in mice by selective expression of the capsaicin receptor". Nature Communications. 3 746. Bibcode:2012NatCo...3..746G. doi:10.1038/ncomms1749. PMC 3592340. PMID 22434189.
- Wang M, Perova Z, Arenkiel BR, Li B (May 2014). "Synaptic modifications in the medial prefrontal cortex in susceptibility and resilience to stress". The Journal of Neuroscience. 34 (22): 7485–7492. doi:10.1523/JNEUROSCI.5294-13.2014. PMC 4035514. PMID 24872553.
- Nagel G, Szellas T, Huhn W, Kateriya S, Adeishvili N, Berthold P, et al. (November 2003). "Channelrhodopsin-2, a directly light-gated cation-selective membrane channel". Proceedings of the National Academy of Sciences of the United States of America. 100 (24): 13940–13945. Bibcode:2003PNAS..10013940N. doi:10.1073/pnas.1936192100. PMC 283525. PMID 14615590.
- Nagel G, Ollig D, Fuhrmann M, Kateriya S, Musti AM, Bamberg E, Hegemann P (June 2002). "Channelrhodopsin-1: a light-gated proton channel in green algae". Science. 296 (5577): 2395–2398. Bibcode:2002Sci...296.2395N. doi:10.1126/science.1072068. PMID 12089443. S2CID 206506942.
- Deisseroth K (September 2015). "Optogenetics: 10 years of microbial opsins in neuroscience". Nature Neuroscience. 18 (9): 1213–1225. doi:10.1038/nn.4091. PMC 4790845. PMID 26308982.
- Boyden ES, Zhang F, Bamberg E, Nagel G, Deisseroth K (September 2005). "Millisecond-timescale, genetically targeted optical control of neural activity". Nature Neuroscience. 8 (9): 1263–1268. doi:10.1038/nn1525. PMID 16116447. S2CID 6809511.
- Deisseroth, Karl (26 August 2015). "Optogenetics: 10 years of microbial opsins in neuroscience". Nature Neuroscience. 18 (9): 1213–1225. doi:10.1038/nn.4091. PMC 4790845. PMID 26308982.
- Bi A, Cui J, Ma YP, Olshevskaya E, Pu M, Dizhoor AM, Pan ZH (April 2006). "Ectopic expression of a microbial-type rhodopsin restores visual responses in mice with photoreceptor degeneration". Neuron. 50 (1): 23–33. doi:10.1016/j.neuron.2006.02.026. PMC 1459045. PMID 16600853.
- Lima SQ, Miesenböck G (April 2005). "Remote control of behavior through genetically targeted photostimulation of neurons". Cell. 121 (1): 141–152. doi:10.1016/j.cell.2005.02.004. PMID 15820685. S2CID 14608546.
- Li X, Gutierrez DV, Hanson MG, Han J, Mark MD, Chiel H, et al. (December 2005). "Fast noninvasive activation and inhibition of neural and network activity by vertebrate rhodopsin and green algae channelrhodopsin". Proceedings of the National Academy of Sciences of the United States of America. 102 (49): 17816–17821. Bibcode:2005PNAS..10217816L. doi:10.1073/pnas.0509030102. PMC 1292990. PMID 16306259.
- Nagel G, Brauner M, Liewald JF, Adeishvili N, Bamberg E, Gottschalk A (December 2005). "Light activation of channelrhodopsin-2 in excitable cells of Caenorhabditis elegans triggers rapid behavioral responses". Current Biology. 15 (24): 2279–2284. Bibcode:2005CBio...15.2279N. doi:10.1016/j.cub.2005.11.032. PMID 16360690. S2CID 7036529.
- Tsien JZ, Chen DF, Gerber D, Tom C, Mercer EH, Anderson DJ, et al. (December 1996). "Subregion- and cell type-restricted gene knockout in mouse brain". Cell. 87 (7): 1317–1326. doi:10.1016/S0092-8674(00)81826-7. PMID 8980237. S2CID 863399.
- Tsien JZ (2016). "Cre-Lox Neurogenetics: 20 Years of Versatile Applications in Brain Research and Counting..." Frontiers in Genetics. 7: 19. doi:10.3389/fgene.2016.00019. PMC 4759636. PMID 26925095.
- Han X, Boyden ES (March 2007). "Multiple-color optical activation, silencing, and desynchronization of neural activity, with single-spike temporal resolution". PLOS ONE. 2 (3) e299. Public Library of Science. Bibcode:2007PLoSO...2..299H. doi:10.1371/journal.pone.0000299. OCLC 678618519. PMC 1808431. PMID 17375185.
- Zhang F, Wang LP, Brauner M, Liewald JF, Kay K, Watzke N, et al. (April 2007). "Multimodal fast optical interrogation of neural circuitry". Nature. 446 (7136): 633–639. Bibcode:2007Natur.446..633Z. doi:10.1038/nature05744. PMID 17410168. S2CID 4415339.
- Schröder-Lang S, Schwärzel M, Seifert R, Strünker T, Kateriya S, Looser J, et al. (January 2007). "Fast manipulation of cellular cAMP level by light in vivo". Nature Methods. 4 (1): 39–42. doi:10.1038/nmeth975. PMID 17128267. S2CID 10616442.
- Gao S, Nagpal J, Schneider MW, Kozjak-Pavlovic V, Nagel G, Gottschalk A (September 2015). "Optogenetic manipulation of cGMP in cells and animals by the tightly light-regulated guanylyl-cyclase opsin CyclOp". Nature Communications. 6 (1) 8046. Bibcode:2015NatCo...6.8046G. doi:10.1038/ncomms9046. PMC 4569695. PMID 26345128.
- Husson SJ, Liewald JF, Schultheis C, Stirman JN, Lu H, Gottschalk A (2012). Samuel A (ed.). "Microbial light-activatable proton pumps as neuronal inhibitors to functionally dissect neuronal networks in C. elegans". PLOS ONE. 7 (7) e40937. Bibcode:2012PLoSO...740937H. doi:10.1371/journal.pone.0040937. PMC 3397962. PMID 22815873.
- Liu Y, LeBeouf B, Guo X, Correa PA, Gualberto DG, Lints R, Garcia LR (March 2011). Goodman MB (ed.). "A cholinergic-regulated circuit coordinates the maintenance and bi-stable states of a sensory-motor behavior during Caenorhabditis elegans male copulation". PLOS Genetics. 7 (3) e1001326. doi:10.1371/journal.pgen.1001326. PMC 3053324. PMID 21423722.
- Beck S, Yu-Strzelczyk J, Pauls D, Constantin OM, Gee CE, Ehmann N, et al. (2018). "Synthetic Light-Activated Ion Channels for Optogenetic Activation and Inhibition". Frontiers in Neuroscience. 12 643. doi:10.3389/fnins.2018.00643. PMC 6176052. PMID 30333716.
- Zhao S, Cunha C, Zhang F, Liu Q, Gloss B, Deisseroth K, et al. (August 2008). "Improved expression of halorhodopsin for light-induced silencing of neuronal activity". Brain Cell Biology. 36 (1–4): 141–154. doi:10.1007/s11068-008-9034-7. PMC 3057022. PMID 18931914.
- Gradinaru V, Thompson KR, Deisseroth K (August 2008). "eNpHR: a Natronomonas halorhodopsin enhanced for optogenetic applications". Brain Cell Biology. 36 (1–4): 129–139. doi:10.1007/s11068-008-9027-6. PMC 2588488. PMID 18677566.
- Witten IB, Lin SC, Brodsky M, Prakash R, Diester I, Anikeeva P, et al. (December 2010). "Cholinergic interneurons control local circuit activity and cocaine conditioning". Science. 330 (6011): 1677–1681. Bibcode:2010Sci...330.1677W. doi:10.1126/science.1193771. PMC 3142356. PMID 21164015.
- Kim JM, Hwa J, Garriga P, Reeves PJ, RajBhandary UL, Khorana HG (February 2005). "Light-driven activation of beta 2-adrenergic receptor signaling by a chimeric rhodopsin containing the beta 2-adrenergic receptor cytoplasmic loops". Biochemistry. 44 (7): 2284–2292. doi:10.1021/bi048328i. PMID 15709741.
- Airan RD, Thompson KR, Fenno LE, Bernstein H, Deisseroth K (April 2009). "Temporally precise in vivo control of intracellular signalling". Nature. 458 (7241): 1025–1029. Bibcode:2009Natur.458.1025A. doi:10.1038/nature07926. PMID 19295515. S2CID 4401796.
- Levskaya A, Weiner OD, Lim WA, Voigt CA (October 2009). "Spatiotemporal control of cell signalling using a light-switchable protein interaction". Nature. 461 (7266): 997–1001. Bibcode:2009Natur.461..997L. doi:10.1038/nature08446. PMC 2989900. PMID 19749742.
- Wu YI, Frey D, Lungu OI, Jaehrig A, Schlichting I, Kuhlman B, Hahn KM (September 2009). "A genetically encoded photoactivatable Rac controls the motility of living cells". Nature. 461 (7260): 104–108. Bibcode:2009Natur.461..104W. doi:10.1038/nature08241. PMC 2766670. PMID 19693014.
- Yazawa M, Sadaghiani AM, Hsueh B, Dolmetsch RE (October 2009). "Induction of protein-protein interactions in live cells using light". Nature Biotechnology. 27 (10): 941–945. doi:10.1038/nbt.1569. PMID 19801976. S2CID 205274357.
- Stierl M, Stumpf P, Udwari D, Gueta R, Hagedorn R, Losi A, et al. (January 2011). "Light modulation of cellular cAMP by a small bacterial photoactivated adenylyl cyclase, bPAC, of the soil bacterium Beggiatoa". The Journal of Biological Chemistry. 286 (2): 1181–1188. doi:10.1074/jbc.M110.185496. PMC 3020725. PMID 21030594.
- Ryu MH, Moskvin OV, Siltberg-Liberles J, Gomelsky M (December 2010). "Natural and engineered photoactivated nucleotidyl cyclases for optogenetic applications". The Journal of Biological Chemistry. 285 (53): 41501–41508. doi:10.1074/jbc.M110.177600. PMC 3009876. PMID 21030591.
- Mahn, Mathias; Saraf-Sinik, Inbar; Patil, Pritish; Pulin, Mauro; Bitton, Eyal; Karalis, Nikolaos; Bruentgens, Felicitas; Palgi, Shaked; Gat, Asaf; Dine, Julien; Wietek, Jonas; Davidi, Ido; Levy, Rivka; Litvin, Anna; Zhou, Fangmin (May 2021). "Efficient optogenetic silencing of neurotransmitter release with a mosquito rhodopsin". Neuron. 109 (10): 1621–1635.e8. doi:10.1016/j.neuron.2021.03.013. PMC 7611984. PMID 33979634.
- Lerner TN, Ye L, Deisseroth K (March 2016). "Communication in Neural Circuits: Tools, Opportunities, and Challenges". Cell. 164 (6): 1136–1150. doi:10.1016/j.cell.2016.02.027. PMC 5725393. PMID 26967281.
- Aravanis AM, Wang LP, Zhang F, Meltzer LA, Mogri MZ, Schneider MB, Deisseroth K (September 2007). "An optical neural interface: in vivo control of rodent motor cortex with integrated fiberoptic and optogenetic technology". Journal of Neural Engineering. 4 (3): S143 – S156. Bibcode:2007JNEng...4S.143A. doi:10.1088/1741-2560/4/3/S02. PMID 17873414. S2CID 1488394.
- Adamantidis AR, Zhang F, Aravanis AM, Deisseroth K, de Lecea L (November 2007). "Neural substrates of awakening probed with optogenetic control of hypocretin neurons". Nature. 450 (7168): 420–424. Bibcode:2007Natur.450..420A. doi:10.1038/nature06310. PMC 6744371. PMID 17943086.
- Gradinaru V, Thompson KR, Zhang F, Mogri M, Kay K, Schneider MB, Deisseroth K (December 2007). "Targeting and readout strategies for fast optical neural control in vitro and in vivo". The Journal of Neuroscience. 27 (52): 14231–14238. doi:10.1523/JNEUROSCI.3578-07.2007. PMC 6673457. PMID 18160630.
- Damestani Y, Reynolds CL, Szu J, Hsu MS, Kodera Y, Binder DK, et al. (November 2013). "Transparent nanocrystalline yttria-stabilized-zirconia calvarium prosthesis". Nanomedicine. 9 (8): 1135–1138. doi:10.1016/j.nano.2013.08.002. PMID 23969102. S2CID 14212180. • Explained by Mohan G (September 4, 2013). "A window to the brain? It's here, says UC Riverside team". Los Angeles Times.
- Legaria AA, Matikainen-Ankney BA, Yang B, Ahanonu B, Licholai JA, Parker JG, Kravitz AV (August 30, 2022). "Fiber photometry in striatum reflects primarily nonsomatic changes in calcium". Nature Neuroscience. 25 (9): 1124–1128. doi:10.1038/s41593-022-01152-z. PMC 10152879. PMID 36042311.
- Wentz CT, Bernstein JG, Monahan P, Guerra A, Rodriguez A, Boyden ES (August 2011). "A wirelessly powered and controlled device for optical neural control of freely-behaving animals". Journal of Neural Engineering. 8 (4) 046021. Bibcode:2011JNEng...8d6021W. doi:10.1088/1741-2560/8/4/046021. PMC 3151576. PMID 21701058.
- Pama EA, Colzato LS, Hommel B (2013-01-01). "Optogenetics as a neuromodulation tool in cognitive neuroscience". Frontiers in Psychology. 4: 610. doi:10.3389/fpsyg.2013.00610. PMC 3764402. PMID 24046763.
- Vierock, Johannes; Rodriguez-Rozada, Silvia; Dieter, Alexander; Pieper, Florian; Sims, Ruth; Tenedini, Federico; Bergs, Amelie C. F.; Bendifallah, Imane; Zhou, Fangmin; Zeitzschel, Nadja; Ahlbeck, Joachim (2021-07-26). "BiPOLES is an optogenetic tool developed for bidirectional dual-color control of neurons". Nature Communications. 12 (1): 4527. Bibcode:2021NatCo..12.4527V. doi:10.1038/s41467-021-24759-5. ISSN 2041-1723. PMC 8313717. PMID 34312384.
- Zhang F, Gradinaru V, Adamantidis AR, Durand R, Airan RD, de Lecea L, Deisseroth K (March 2010). "Optogenetic interrogation of neural circuits: technology for probing mammalian brain structures". Nature Protocols. 5 (3): 439–456. doi:10.1038/nprot.2009.226. PMC 4503465. PMID 20203662.
- Zeng H, Madisen L (2012-09-05). "Mouse transgenic approaches in optogenetics". Optogenetics: Tools for Controlling and Monitoring Neuronal Activity. Progress in Brain Research. Vol. 196. pp. 193–213. doi:10.1016/B978-0-444-59426-6.00010-0. ISBN 978-0-444-59426-6. PMC 3433654. PMID 22341327.
- Warden MR, Cardin JA, Deisseroth K (July 2014). "Optical neural interfaces". Annual Review of Biomedical Engineering. 16: 103–129. doi:10.1146/annurev-bioeng-071813-104733. PMC 4163158. PMID 25014785.
- Guru A, Post RJ, Ho YY, Warden MR (July 2015). "Making Sense of Optogenetics". The International Journal of Neuropsychopharmacology. 18 (11) pyv079. doi:10.1093/ijnp/pyv079. PMC 4756725. PMID 26209858.
- Kim CK, Yang SJ, Pichamoorthy N, Young NP, Kauvar I, Jennings JH, Lerner TN, Berndt A, Lee SY, Ramakrishnan C, Davidson TJ, Inoue M, Bito H, Deisseroth K (2016). "Simultaneous fast measurement of circuit dynamics at multiple sites across the mammalian brain". Nat Methods. 13 (4): 325–8. doi:10.1038/nmeth.3770. PMC 5717315. PMID 26878381.
- Cui G, Jun SB, Jin X, Luo G, Pham MD, Lovinger DM, et al. (June 2014). "Deep brain optical measurements of cell type-specific neural activity in behaving mice". Nature Protocols. 9 (6): 1213–1228. doi:10.1038/nprot.2014.080. PMC 4100551. PMID 24784819.
- Heitmann S, Rule M, Truccolo W, Ermentrout B (January 2017). "Optogenetic Stimulation Shifts the Excitability of Cerebral Cortex from Type I to Type II: Oscillation Onset and Wave Propagation". PLOS Computational Biology. 13 (1) e1005349. Bibcode:2017PLSCB..13E5349H. doi:10.1371/journal.pcbi.1005349. PMC 5295702. PMID 28118355.
- Zhang, Yan-Ping; Oertner, Thomas G (2007). "Optical induction of synaptic plasticity using a light-sensitive channel". Nature Methods. 4 (2): 139–141. doi:10.1038/nmeth988. ISSN 1548-7091. PMID 17195846. S2CID 17721823.
- Leergaard TB, Hilgetag CC, Sporns O (2012-05-01). "Mapping the connectome: multi-level analysis of brain connectivity". Frontiers in Neuroinformatics. 6: 14. doi:10.3389/fninf.2012.00014. PMC 3340894. PMID 22557964.
- Luboeinski J, Tchumatchenko T (September 2020). "Nonlinear response characteristics of neural networks and single neurons undergoing optogenetic excitation". Network Neuroscience. 4 (3): 852–870. doi:10.1162/netn_a_00154. PMC 7888483. PMID 33615093.
- Azees, Ajmal (December 2023). "Spread of activation and interaction between channels with multi-channel optogenetic stimulation in the mouse cochlea". Hearing Research. 440 108911. doi:10.1016/j.heares.2023.108911. PMID 37977051.
- Kravitz AV, Freeze BS, Parker PR, Kay K, Thwin MT, Deisseroth K, Kreitzer AC (July 2010). "Regulation of parkinsonian motor behaviours by optogenetic control of basal ganglia circuitry". Nature. 466 (7306): 622–626. Bibcode:2010Natur.466..622K. doi:10.1038/nature09159. PMC 3552484. PMID 20613723.
- Gradinaru V, Mogri M, Thompson KR, Henderson JM, Deisseroth K (April 2009). "Optical deconstruction of parkinsonian neural circuitry". Science. 324 (5925): 354–359. Bibcode:2009Sci...324..354G. CiteSeerX 10.1.1.368.668. doi:10.1126/science.1167093. PMC 6744370. PMID 19299587.
- Cardin JA, Carlén M, Meletis K, Knoblich U, Zhang F, Deisseroth K, et al. (June 2009). "Driving fast-spiking cells induces gamma rhythm and controls sensory responses". Nature. 459 (7247): 663–667. Bibcode:2009Natur.459..663C. doi:10.1038/nature08002. PMC 3655711. PMID 19396156.
- Sohal VS, Zhang F, Yizhar O, Deisseroth K (June 2009). "Parvalbumin neurons and gamma rhythms enhance cortical circuit performance". Nature. 459 (7247): 698–702. Bibcode:2009Natur.459..698S. doi:10.1038/nature07991. PMC 3969859. PMID 19396159.
- Tsai HC, Zhang F, Adamantidis A, Stuber GD, Bonci A, de Lecea L, Deisseroth K (May 2009). "Phasic firing in dopaminergic neurons is sufficient for behavioral conditioning". Science. 324 (5930): 1080–1084. Bibcode:2009Sci...324.1080T. doi:10.1126/science.1168878. PMC 5262197. PMID 19389999.
- Haubensak W, Kunwar PS, Cai H, Ciocchi S, Wall NR, Ponnusamy R, et al. (November 2010). "Genetic dissection of an amygdala microcircuit that gates conditioned fear". Nature. 468 (7321): 270–276. Bibcode:2010Natur.468..270H. doi:10.1038/nature09553. PMC 3597095. PMID 21068836.
- Johansen JP, Hamanaka H, Monfils MH, Behnia R, Deisseroth K, Blair HT, LeDoux JE (July 2010). "Optical activation of lateral amygdala pyramidal cells instructs associative fear learning". Proceedings of the National Academy of Sciences of the United States of America. 107 (28): 12692–12697. Bibcode:2010PNAS..10712692J. doi:10.1073/pnas.1002418107. PMC 2906568. PMID 20615999.
- Jasnow AM, Ehrlich DE, Choi DC, Dabrowska J, Bowers ME, McCullough KM, et al. (June 2013). "Thy1-expressing neurons in the basolateral amygdala may mediate fear inhibition". The Journal of Neuroscience. 33 (25): 10396–10404. doi:10.1523/JNEUROSCI.5539-12.2013. PMC 3685835. PMID 23785152.
- Dias BG, Banerjee SB, Goodman JV, Ressler KJ (June 2013). "Towards new approaches to disorders of fear and anxiety". Current Opinion in Neurobiology. 23 (3): 346–352. doi:10.1016/j.conb.2013.01.013. PMC 3672317. PMID 23402950.
- Karalis N, Dejean C, Chaudun F, Khoder S, Rozeske RR, Wurtz H, et al. (April 2016). "4-Hz oscillations synchronize prefrontal-amygdala circuits during fear behavior". Nature Neuroscience. 19 (4): 605–612. doi:10.1038/nn.4251. PMC 4843971. PMID 26878674.
- Shusterman R, Smear MC, Koulakov AA, Rinberg D (July 2011). "Precise olfactory responses tile the sniff cycle". Nature Neuroscience. 14 (8): 1039–1044. doi:10.1038/nn.2877. PMID 21765422. S2CID 5194595.
- Smith RS, Hu R, DeSouza A, Eberly CL, Krahe K, Chan W, Araneda RC (July 2015). "Differential Muscarinic Modulation in the Olfactory Bulb". The Journal of Neuroscience. 35 (30): 10773–10785. doi:10.1523/JNEUROSCI.0099-15.2015. PMC 4518052. PMID 26224860.
- Patterson MA, Lagier S, Carleton A (August 2013). "Odor representations in the olfactory bulb evolve after the first breath and persist as an odor afterimage". Proceedings of the National Academy of Sciences of the United States of America. 110 (35): E3340 – E3349. Bibcode:2013PNAS..110E3340P. doi:10.1073/pnas.1303873110. PMC 3761593. PMID 23918364.
- Tecuapetla F, Patel JC, Xenias H, English D, Tadros I, Shah F, et al. (May 2010). "Glutamatergic signaling by mesolimbic dopamine neurons in the nucleus accumbens". The Journal of Neuroscience. 30 (20): 7105–7110. doi:10.1523/JNEUROSCI.0265-10.2010. PMC 3842465. PMID 20484653.
- Cela E, McFarlan AR, Chung AJ, Wang T, Chierzi S, Murai KK, Sjöström PJ (March 2019). "An Optogenetic Kindling Model of Neocortical Epilepsy". Scientific Reports. 9 (1) 5236. Bibcode:2019NatSR...9.5236C. doi:10.1038/s41598-019-41533-2. PMC 6437216. PMID 30918286.
- Ryu B, Nagappan S, Santos-Valencia F, Lee P, Rodriguez E, Lackie M, et al. (April 2021). "Chronic loss of inhibition in piriform cortex following brief, daily optogenetic stimulation". Cell Reports. 35 (3) 109001. doi:10.1016/j.celrep.2021.109001. PMC 8102022. PMID 33882304.
- Bingen BO, Engels MC, Schalij MJ, Jangsangthong W, Neshati Z, Feola I, et al. (October 2014). "Light-induced termination of spiral wave arrhythmias by optogenetic engineering of atrial cardiomyocytes". Cardiovascular Research. 104 (1): 194–205. doi:10.1093/cvr/cvu179. PMID 25082848.
- Nussinovitch U, Gepstein L (July 2015). "Optogenetics for in vivo cardiac pacing and resynchronization therapies". Nature Biotechnology. 33 (7): 750–754. doi:10.1038/nbt.3268. PMID 26098449. S2CID 1794556.
- Nyns EC, Kip A, Bart CI, Plomp JJ, Zeppenfeld K, Schalij MJ, et al. (July 2017). "Optogenetic termination of ventricular arrhythmias in the whole heart: towards biological cardiac rhythm management". European Heart Journal. 38 (27): 2132–2136. doi:10.1093/eurheartj/ehw574. PMC 5837774. PMID 28011703.
- Bruegmann T, Boyle PM, Vogt CC, Karathanos TV, Arevalo HJ, Fleischmann BK, et al. (October 2016). "Optogenetic defibrillation terminates ventricular arrhythmia in mouse hearts and human simulations". The Journal of Clinical Investigation. 126 (10): 3894–3904. doi:10.1172/JCI88950. PMC 5096832. PMID 27617859.
- Crocini C, Ferrantini C, Coppini R, Scardigli M, Yan P, Loew LM, et al. (October 2016). "Optogenetics design of mechanistically-based stimulation patterns for cardiac defibrillation". Scientific Reports. 6 35628. Bibcode:2016NatSR...635628C. doi:10.1038/srep35628. PMC 5066272. PMID 27748433.
- Hernandez VH, Gehrt A, Reuter K, Jing Z, Jeschke M, Mendoza Schulz A, et al. (March 2014). "Optogenetic stimulation of the auditory pathway". The Journal of Clinical Investigation. 124 (3): 1114–1129. doi:10.1172/JCI69050. PMC 3934189. PMID 24509078.
- Keppeler D, Merino RM, Lopez de la Morena D, Bali B, Huet AT, Gehrt A, et al. (December 2018). "Ultrafast optogenetic stimulation of the auditory pathway by targeting-optimized Chronos". The EMBO Journal. 37 (24) e99649. doi:10.15252/embj.201899649. PMC 6293277. PMID 30396994.
- Mager T, Lopez de la Morena D, Senn V, Schlotte J, D Errico A, Feldbauer K, et al. (May 2018). "High frequency neural spiking and auditory signaling by ultrafast red-shifted optogenetics". Nature Communications. 9 (1) 1750. Bibcode:2018NatCo...9.1750M. doi:10.1038/s41467-018-04146-3. PMC 5931537. PMID 29717130.
- Moser T (October 2015). "Optogenetic stimulation of the auditory pathway for research and future prosthetics". Current Opinion in Neurobiology. 34: 29–36. doi:10.1016/j.conb.2015.01.004. PMID 25637880. S2CID 35199775.
- Lin JY, Knutsen PM, Muller A, Kleinfeld D, Tsien RY (October 2013). "ReaChR: a red-shifted variant of channelrhodopsin enables deep transcranial optogenetic excitation". Nature Neuroscience. 16 (10): 1499–1508. doi:10.1038/nn.3502. PMC 3793847. PMID 23995068.
- Matthews GA, Nieh EH, Vander Weele CM, Halbert SA, Pradhan RV, Yosafat AS, et al. (February 2016). "Dorsal Raphe Dopamine Neurons Represent the Experience of Social Isolation". Cell. 164 (4): 617–631. doi:10.1016/j.cell.2015.12.040. PMC 4752823. PMID 26871628.
- Klapoetke NC, Murata Y, Kim SS, Pulver SR, Birdsey-Benson A, Cho YK, et al. (March 2014). "Independent optical excitation of distinct neural populations". Nature Methods. 11 (3): 338–346. doi:10.1038/nmeth.2836. PMC 3943671. PMID 24509633.
- Berndt A, Yizhar O, Gunaydin LA, Hegemann P, Deisseroth K (February 2009). "Bi-stable neural state switches". Nature Neuroscience. 12 (2): 229–234. doi:10.1038/nn.2247. PMID 19079251. S2CID 15125498.
- Govorunova EG, Sineshchekov OA, Janz R, Liu X, Spudich JL (August 2015). "NEUROSCIENCE. Natural light-gated anion channels: A family of microbial rhodopsins for advanced optogenetics". Science. 349 (6248): 647–650. doi:10.1126/science.aaa7484. PMC 4764398. PMID 26113638.
- Mauss AS, Busch C, Borst A (October 2017). "Optogenetic Neuronal Silencing in Drosophila during Visual Processing". Scientific Reports. 7 (1) 13823. Bibcode:2017NatSR...713823M. doi:10.1038/s41598-017-14076-7. PMC 5653863. PMID 29061981.
- Portugues, Ruben; Severi, Kristen E; Wyart, Claire; Ahrens, Misha B (2013-02-01). "Optogenetics in a transparent animal: circuit function in the larval zebrafish". Current Opinion in Neurobiology. Neurogenetics. 23 (1): 119–126. doi:10.1016/j.conb.2012.11.001. ISSN 0959-4388. PMID 23246238. S2CID 19906279.
- Cande, Jessica; Namiki, Shigehiro; Qiu, Jirui; Korff, Wyatt; Card, Gwyneth M; Shaevitz, Joshua W; Stern, David L; Berman, Gordon J (2018-06-26). Scott, Kristin (ed.). "Optogenetic dissection of descending behavioral control in Drosophila". eLife. 7 e34275. doi:10.7554/eLife.34275. ISSN 2050-084X. PMC 6031430. PMID 29943729.
- DeAngelis, Brian D; Zavatone-Veth, Jacob A; Gonzalez-Suarez, Aneysis D; Clark, Damon A (2020-04-22). Calabrese, Ronald L (ed.). "Spatiotemporally precise optogenetic activation of sensory neurons in freely walking Drosophila". eLife. 9 e54183. doi:10.7554/eLife.54183. ISSN 2050-084X. PMC 7198233. PMID 32319425.
- Bidaye, Salil S.; Laturney, Meghan; Chang, Amy K.; Liu, Yuejiang; Bockemühl, Till; Büschges, Ansgar; Scott, Kristin (2020-11-11). "Two Brain Pathways Initiate Distinct Forward Walking Programs in Drosophila". Neuron. 108 (3): 469–485.e8. doi:10.1016/j.neuron.2020.07.032. ISSN 0896-6273. PMC 9435592. PMID 32822613. S2CID 221198570.
- Heiney, Shane A.; Kim, Jinsook; Augustine, George J.; Medina, Javier F. (2014-02-05). "Precise Control of Movement Kinematics by Optogenetic Inhibition of Purkinje Cell Activity". Journal of Neuroscience. 34 (6): 2321–2330. doi:10.1523/JNEUROSCI.4547-13.2014. ISSN 0270-6474. PMC 3913874. PMID 24501371.
- Solari N, Sviatkó K, Laszlovszky T, Hegedüs P, Hangya B (May 2018). "Open Source Tools for Temporally Controlled Rodent Behavior Suitable for Electrophysiology and Optogenetic Manipulations". Frontiers in Systems Neuroscience. 12 18. doi:10.3389/fnsys.2018.00018. PMC 5962774. PMID 29867383.
- Lin JY (January 2011). "A user's guide to channelrhodopsin variants: features, limitations and future developments". Experimental Physiology. 96 (1): 19–25. doi:10.1113/expphysiol.2009.051961. PMC 2995811. PMID 20621963.
- Grosenick, Logan; Marshel, James H.; Deisseroth, Karl (2015-04-08). "Closed-Loop and Activity-Guided Optogenetic Control". Neuron. 86 (1): 106–139. doi:10.1016/j.neuron.2015.03.034. ISSN 0896-6273. PMC 4775736. PMID 25856490.
- Armstrong, Caren; Krook-Magnuson, Esther; Oijala, Mikko; Soltesz, Ivan (2013). "Closed-loop optogenetic intervention in mice". Nature Protocols. 8 (8): 1475–1493. doi:10.1038/nprot.2013.080. ISSN 1750-2799. PMC 3988315. PMID 23845961.
- Kovács KA, O'Neill J, Schoenenberger P, Penttonen M, Ranguel Guerrero DK, Csicsvari J (19 Nov 2016). "Optogenetically Blocking Sharp Wave Ripple Events in Sleep Does Not Interfere with the Formation of Stable Spatial Representation in the CA1 Area of the Hippocampus". PLOS ONE. 11 (10) e0164675. Bibcode:2016PLoSO..1164675K. doi:10.1371/journal.pone.0164675. PMC 5070819. PMID 27760158.
- Valon L, Marín-Llauradó A, Wyatt T, Charras G, Trepat X (February 2017). "Optogenetic control of cellular forces and mechanotransduction". Nature Communications. 8 14396. Bibcode:2017NatCo...814396V. doi:10.1038/ncomms14396. PMC 5309899. PMID 28186127.
- Khamo JS, Krishnamurthy VV, Sharum SR, Mondal P, Zhang K (October 2017). "Applications of Optobiology in Intact Cells and Multicellular Organisms". Journal of Molecular Biology. 429 (20): 2999–3017. doi:10.1016/j.jmb.2017.08.015. PMID 28882542.
- Fenno L, Yizhar O, Deisseroth K (2011). "The development and application of optogenetics". Annual Review of Neuroscience. 34: 389–412. doi:10.1146/annurev-neuro-061010-113817. PMC 6699620. PMID 21692661.
- "optogenetics - Search Results". PubMed. Retrieved 2020-02-29.
- Wittmann T, Dema A, van Haren J (October 2020). "Lights, cytoskeleton, action: Optogenetic control of cell dynamics". Current Opinion in Cell Biology. 66. Elsevier Ltd.: 1–10. doi:10.1016/j.ceb.2020.03.003. PMC 7577957. PMID 32371345.
- Konermann S, Brigham MD, Trevino A, Hsu PD, Heidenreich M, Cong L, et al. (August 2013). "Optical control of mammalian endogenous transcription and epigenetic states". Nature. 500 (7463): 472–476. Bibcode:2013Natur.500..472K. doi:10.1038/nature12466. PMC 3856241. PMID 23877069.
- Leung DW, Otomo C, Chory J, Rosen MK (September 2008). "Genetically encoded photoswitching of actin assembly through the Cdc42-WASP-Arp2/3 complex pathway". Proceedings of the National Academy of Sciences of the United States of America. 105 (35): 12797–12802. Bibcode:2008PNAS..10512797L. doi:10.1073/pnas.0801232105. PMC 2525560. PMID 18728185.
- Toettcher JE, Gong D, Lim WA, Weiner OD (September 2011). "Light-based feedback for controlling intracellular signaling dynamics". Nature Methods. 8 (10): 837–839. doi:10.1038/nmeth.1700. PMC 3184382. PMID 21909100.
- Strickland D, Lin Y, Wagner E, Hope CM, Zayner J, Antoniou C, et al. (March 2012). "TULIPs: tunable, light-controlled interacting protein tags for cell biology". Nature Methods. 9 (4): 379–384. doi:10.1038/nmeth.1904. PMC 3444151. PMID 22388287.
- Idevall-Hagren O, Dickson EJ, Hille B, Toomre DK, De Camilli P (August 2012). "Optogenetic control of phosphoinositide metabolism". Proceedings of the National Academy of Sciences of the United States of America. 109 (35): E2316 – E2323. Bibcode:2012PNAS..109E2316I. doi:10.1073/pnas.1211305109. PMC 3435206. PMID 22847441.
- Bugaj LJ, Choksi AT, Mesuda CK, Kane RS, Schaffer DV (March 2013). "Optogenetic protein clustering and signaling activation in mammalian cells". Nature Methods. 10 (3): 249–252. doi:10.1038/nmeth.2360. PMID 23377377. S2CID 8737019.
- Lungu OI, Hallett RA, Choi EJ, Aiken MJ, Hahn KM, Kuhlman B (April 2012). "Designing photoswitchable peptides using the AsLOV2 domain". Chemistry & Biology. 19 (4): 507–517. doi:10.1016/j.chembiol.2012.02.006. PMC 3334866. PMID 22520757.
- Wu YI, Frey D, Lungu OI, Jaehrig A, Schlichting I, Kuhlman B, Hahn KM (September 2009). "A genetically encoded photoactivatable Rac controls the motility of living cells". Nature. 461 (7260): 104–108. Bibcode:2009Natur.461..104W. doi:10.1038/nature08241. PMC 2766670. PMID 19693014.
- Smart AD, Pache RA, Thomsen ND, Kortemme T, Davis GW, Wells JA (September 2017). "Engineering a light-activated caspase-3 for precise ablation of neurons in vivo". Proceedings of the National Academy of Sciences of the United States of America. 114 (39): E8174 – E8183. Bibcode:2017PNAS..114E8174S. doi:10.1073/pnas.1705064114. PMC 5625904. PMID 28893998.
- Dagliyan O, Tarnawski M, Chu PH, Shirvanyants D, Schlichting I, Dokholyan NV, Hahn KM (December 2016). "Engineering extrinsic disorder to control protein activity in living cells". Science. 354 (6318): 1441–1444. Bibcode:2016Sci...354.1441D. doi:10.1126/science.aah3404. PMC 5362825. PMID 27980211.
- Guntas G, Hallett RA, Zimmerman SP, Williams T, Yumerefendi H, Bear JE, Kuhlman B (January 2015). "Engineering an improved light-induced dimer (iLID) for controlling the localization and activity of signaling proteins". Proceedings of the National Academy of Sciences of the United States of America. 112 (1): 112–117. Bibcode:2015PNAS..112..112G. doi:10.1073/pnas.1417910112. PMC 4291625. PMID 25535392.
- Wang H, Vilela M, Winkler A, Tarnawski M, Schlichting I, Yumerefendi H, et al. (September 2016). "LOVTRAP: an optogenetic system for photoinduced protein dissociation". Nature Methods. 13 (9): 755–758. doi:10.1038/nmeth.3926. PMC 5137947. PMID 27427858.
- van Haren J, Charafeddine RA, Ettinger A, Wang H, Hahn KM, Wittmann T (March 2018). "Local control of intracellular microtubule dynamics by EB1 photodissociation". Nature Cell Biology. 20 (3). Nature Research.: 252–261. doi:10.1038/s41556-017-0028-5. PMC 5826794. PMID 29379139.
- Zhou XX, Chung HK, Lam AJ, Lin MZ (November 2012). "Optical control of protein activity by fluorescent protein domains". Science. 338 (6108): 810–814. Bibcode:2012Sci...338..810Z. doi:10.1126/science.1226854. PMC 3702057. PMID 23139335.
- Tischer D, Weiner OD (August 2014). "Illuminating cell signalling with optogenetic tools". Nature Reviews. Molecular Cell Biology. 15 (8): 551–558. doi:10.1038/nrm3837. PMC 4145075. PMID 25027655.
- Purvis JE, Lahav G (February 2013). "Encoding and decoding cellular information through signaling dynamics". Cell. 152 (5): 945–956. doi:10.1016/j.cell.2013.02.005. PMC 3707615. PMID 23452846.
- Santos SD, Verveer PJ, Bastiaens PI (March 2007). "Growth factor-induced MAPK network topology shapes Erk response determining PC-12 cell fate". Nature Cell Biology. 9 (3): 324–330. doi:10.1038/ncb1543. PMID 17310240. S2CID 31709706.
- Toettcher JE, Weiner OD, Lim WA (December 2013). "Using optogenetics to interrogate the dynamic control of signal transmission by the Ras/Erk module". Cell. 155 (6): 1422–1434. doi:10.1016/j.cell.2013.11.004. PMC 3925772. PMID 24315106.
- Huidobro N, Mendez-Fernandez A, Mendez-Balbuena I, Gutierrez R, Kristeva R, Manjarrez E (2017). "Brownian Optogenetic-Noise-Photostimulation on the Brain Amplifies Somatosensory-Evoked Field Potentials". Frontiers in Neuroscience. 11 464. doi:10.3389/fnins.2017.00464. PMC 5583167. PMID 28912671.
- Huidobro N, De la Torre-Valdovinos B, Mendez A, Treviño M, Arias-Carrion O, Chavez F, et al. (January 2018). "Optogenetic noise-photostimulation on the brain increases somatosensory spike firing responses". Neuroscience Letters. 664: 51–57. doi:10.1016/j.neulet.2017.11.004. PMID 29128628. S2CID 3370851.
- Mabil P, Huidobro N, Torres-Ramirez O, Flores-Hernandez J, Flores A, Gutierrez R, Manjarrez E (2020). "Noisy Light Augments the Na+ Current in Somatosensory Pyramidal Neurons of Optogenetic Transgenic Mice". Frontiers in Neuroscience. 14 490. doi:10.3389/fnins.2020.00490. PMC 7263390. PMID 32528244.
- Reiner A, Isacoff EY (October 2013). "The Brain Prize 2013: the optogenetics revolution". Trends in Neurosciences. 36 (10): 557–560. doi:10.1016/j.tins.2013.08.005. PMID 24054067. S2CID 205404606.
ncbi.nlm.nih.gov
- Tsien JZ (2016). "Cre-Lox Neurogenetics: 20 Years of Versatile Applications in Brain Research and Counting…". Frontiers in Genetics. 7: 19. doi:10.3389/fgene.2016.00019. PMC 4759636. PMID 26925095.
- Guo ZV, Li N, Huber D, Ophir E, Gutnisky D, Ting JT, et al. (January 2014). "Flow of cortical activity underlying a tactile decision in mice". Neuron. 81 (1): 179–194. doi:10.1016/j.neuron.2013.10.020. PMC 3984938. PMID 24361077.
- Lak A, Okun M, Moss MM, Gurnani H, Farrell K, Wells MJ, et al. (February 2020). "Dopaminergic and Prefrontal Basis of Learning from Sensory Confidence and Reward Value". Neuron. 105 (4): 700–711.e6. doi:10.1016/j.neuron.2019.11.018. PMC 7031700. PMID 31859030.
- Liu X, Ramirez S, Pang PT, Puryear CB, Govindarajan A, Deisseroth K, Tonegawa S (March 2012). "Optogenetic stimulation of a hippocampal engram activates fear memory recall". Nature. 484 (7394): 381–385. Bibcode:2012Natur.484..381L. doi:10.1038/nature11028. PMC 3331914. PMID 22441246.
- Tanaka R, Higuchi T, Kohatsu S, Sato K, Yamamoto D (November 2017). "Optogenetic Activation of the fruitless-Labeled Circuitry in Drosophila subobscura Males Induces Mating Motor Acts". The Journal of Neuroscience. 37 (48): 11662–11674. doi:10.1523/JNEUROSCI.1943-17.2017. PMC 6705751. PMID 29109241.
- Stamatakis AM, Stuber GD (November 2012). "Optogenetic strategies to dissect the neural circuits that underlie reward and addiction". Cold Spring Harbor Perspectives in Medicine. 2 (11) a011924. doi:10.1101/cshperspect.a011924. PMC 3543095. PMID 23043156.
- Musso, Pierre-Yves; Junca, Pierre; Jelen, Meghan; Feldman-Kiss, Damian; Zhang, Han; Chan, Rachel CW; Gordon, Michael D (2019-07-19). Ramaswami, Mani; Dulac, Catherine (eds.). "Closed-loop optogenetic activation of peripheral or central neurons modulates feeding in freely moving Drosophila". eLife. 8 e45636. doi:10.7554/eLife.45636. ISSN 2050-084X. PMC 6668987. PMID 31322499.
- Feng, Kai; Sen, Rajyashree; Minegishi, Ryo; Dübbert, Michael; Bockemühl, Till; Büschges, Ansgar; Dickson, Barry J. (2020-12-02). "Distributed control of motor circuits for backward walking in Drosophila". Nature Communications. 11 (1): 6166. Bibcode:2020NatCo..11.6166F. doi:10.1038/s41467-020-19936-x. ISSN 2041-1723. PMC 7710706. PMID 33268800. S2CID 227255627.
- Lim, Diana; LeDue, Jeffrey; Mohajerani, Majid; Vanni, Matthieu; Murphy, Timothy (2013). "Optogenetic approaches for functional mouse brain mapping". Frontiers in Neuroscience. 7: 54. doi:10.3389/fnins.2013.00054. ISSN 1662-453X. PMC 3622058. PMID 23596383.
- Lee, Candice; Lavoie, Andreanne; Liu, Jiashu; Chen, Simon X.; Liu, Bao-hua (2020). "Light Up the Brain: The Application of Optogenetics in Cell-Type Specific Dissection of Mouse Brain Circuits". Frontiers in Neural Circuits. 14 18. doi:10.3389/fncir.2020.00018. ISSN 1662-5110. PMC 7193678. PMID 32390806.
- Franconville, Romain; Beron, Celia; Jayaraman, Vivek (2018-08-20). VijayRaghavan, K; Scott, Kristin; Heinze, Stanley (eds.). "Building a functional connectome of the Drosophila central complex". eLife. 7 e37017. doi:10.7554/eLife.37017. ISSN 2050-084X. PMC 6150698. PMID 30124430.
- Chen, Chenghao; Agrawal, Sweta; Mark, Brandon; Mamiya, Akira; Sustar, Anne; Phelps, Jasper S.; Lee, Wei-Chung Allen; Dickson, Barry J.; Card, Gwyneth M.; Tuthill, John C. (2021-12-06). "Functional architecture of neural circuits for leg proprioception in Drosophila". Current Biology. 31 (23): 5163–5175.e7. Bibcode:2021CBio...31E5163C. doi:10.1016/j.cub.2021.09.035. ISSN 0960-9822. PMC 8665017. PMID 34637749.
- Primer on Optogenetics: Pastrana E (2010). "Optogenetics: Controlling cell function with light". Nature Methods. 8 (1): 24–25. doi:10.1038/nmeth.f.323. S2CID 5808517.
Editorial: "Method of the Year 2010". Nature Methods. 8 (1): 1. 2010. doi:10.1038/nmeth.f.321.
Commentary: Deisseroth K (January 2011). "Optogenetics". Nature Methods. 8 (1): 26–29. doi:10.1038/nmeth.f.324. PMC 6814250. PMID 21191368. - Crick F (December 1999). "The impact of molecular biology on neuroscience". Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 354 (1392): 2021–2025. doi:10.1098/rstb.1999.0541. PMC 1692710. PMID 10670022.
- Hoffmann A, Hildebrandt V, Heberle J, Büldt G (September 1994). "Photoactive mitochondria: in vivo transfer of a light-driven proton pump into the inner mitochondrial membrane of Schizosaccharomyces pombe". Proceedings of the National Academy of Sciences of the United States of America. 91 (20): 9367–9371. Bibcode:1994PNAS...91.9367H. doi:10.1073/pnas.91.20.9367. PMC 44813. PMID 7937771.
- Zemelman BV, Nesnas N, Lee GA, Miesenbock G (February 2003). "Photochemical gating of heterologous ion channels: remote control over genetically designated populations of neurons". Proceedings of the National Academy of Sciences of the United States of America. 100 (3): 1352–1357. Bibcode:2003PNAS..100.1352Z. doi:10.1073/pnas.242738899. PMC 298776. PMID 12540832.
- Banghart M, Borges K, Isacoff E, Trauner D, Kramer RH (December 2004). "Light-activated ion channels for remote control of neuronal firing". Nature Neuroscience. 7 (12): 1381–1386. doi:10.1038/nn1356. PMC 1447674. PMID 15558062.
- Volgraf M, Gorostiza P, Numano R, Kramer RH, Isacoff EY, Trauner D (January 2006). "Allosteric control of an ionotropic glutamate receptor with an optical switch". Nature Chemical Biology. 2 (1): 47–52. doi:10.1038/nchembio756. PMC 1447676. PMID 16408092.
- Arenkiel BR, Klein ME, Davison IG, Katz LC, Ehlers MD (April 2008). "Genetic control of neuronal activity in mice conditionally expressing TRPV1". Nature Methods. 5 (4): 299–302. doi:10.1038/nmeth.1190. PMC 3127246. PMID 18327266.
- Güler AD, Rainwater A, Parker JG, Jones GL, Argilli E, Arenkiel BR, et al. (March 2012). "Transient activation of specific neurons in mice by selective expression of the capsaicin receptor". Nature Communications. 3 746. Bibcode:2012NatCo...3..746G. doi:10.1038/ncomms1749. PMC 3592340. PMID 22434189.
- Wang M, Perova Z, Arenkiel BR, Li B (May 2014). "Synaptic modifications in the medial prefrontal cortex in susceptibility and resilience to stress". The Journal of Neuroscience. 34 (22): 7485–7492. doi:10.1523/JNEUROSCI.5294-13.2014. PMC 4035514. PMID 24872553.
- Nagel G, Szellas T, Huhn W, Kateriya S, Adeishvili N, Berthold P, et al. (November 2003). "Channelrhodopsin-2, a directly light-gated cation-selective membrane channel". Proceedings of the National Academy of Sciences of the United States of America. 100 (24): 13940–13945. Bibcode:2003PNAS..10013940N. doi:10.1073/pnas.1936192100. PMC 283525. PMID 14615590.
- Deisseroth K (September 2015). "Optogenetics: 10 years of microbial opsins in neuroscience". Nature Neuroscience. 18 (9): 1213–1225. doi:10.1038/nn.4091. PMC 4790845. PMID 26308982.
- Deisseroth, Karl (26 August 2015). "Optogenetics: 10 years of microbial opsins in neuroscience". Nature Neuroscience. 18 (9): 1213–1225. doi:10.1038/nn.4091. PMC 4790845. PMID 26308982.
- Bi A, Cui J, Ma YP, Olshevskaya E, Pu M, Dizhoor AM, Pan ZH (April 2006). "Ectopic expression of a microbial-type rhodopsin restores visual responses in mice with photoreceptor degeneration". Neuron. 50 (1): 23–33. doi:10.1016/j.neuron.2006.02.026. PMC 1459045. PMID 16600853.
- Li X, Gutierrez DV, Hanson MG, Han J, Mark MD, Chiel H, et al. (December 2005). "Fast noninvasive activation and inhibition of neural and network activity by vertebrate rhodopsin and green algae channelrhodopsin". Proceedings of the National Academy of Sciences of the United States of America. 102 (49): 17816–17821. Bibcode:2005PNAS..10217816L. doi:10.1073/pnas.0509030102. PMC 1292990. PMID 16306259.
- Tsien JZ (2016). "Cre-Lox Neurogenetics: 20 Years of Versatile Applications in Brain Research and Counting..." Frontiers in Genetics. 7: 19. doi:10.3389/fgene.2016.00019. PMC 4759636. PMID 26925095.
- Han X, Boyden ES (March 2007). "Multiple-color optical activation, silencing, and desynchronization of neural activity, with single-spike temporal resolution". PLOS ONE. 2 (3) e299. Public Library of Science. Bibcode:2007PLoSO...2..299H. doi:10.1371/journal.pone.0000299. OCLC 678618519. PMC 1808431. PMID 17375185.
- Gao S, Nagpal J, Schneider MW, Kozjak-Pavlovic V, Nagel G, Gottschalk A (September 2015). "Optogenetic manipulation of cGMP in cells and animals by the tightly light-regulated guanylyl-cyclase opsin CyclOp". Nature Communications. 6 (1) 8046. Bibcode:2015NatCo...6.8046G. doi:10.1038/ncomms9046. PMC 4569695. PMID 26345128.
- Husson SJ, Liewald JF, Schultheis C, Stirman JN, Lu H, Gottschalk A (2012). Samuel A (ed.). "Microbial light-activatable proton pumps as neuronal inhibitors to functionally dissect neuronal networks in C. elegans". PLOS ONE. 7 (7) e40937. Bibcode:2012PLoSO...740937H. doi:10.1371/journal.pone.0040937. PMC 3397962. PMID 22815873.
- Liu Y, LeBeouf B, Guo X, Correa PA, Gualberto DG, Lints R, Garcia LR (March 2011). Goodman MB (ed.). "A cholinergic-regulated circuit coordinates the maintenance and bi-stable states of a sensory-motor behavior during Caenorhabditis elegans male copulation". PLOS Genetics. 7 (3) e1001326. doi:10.1371/journal.pgen.1001326. PMC 3053324. PMID 21423722.
- Beck S, Yu-Strzelczyk J, Pauls D, Constantin OM, Gee CE, Ehmann N, et al. (2018). "Synthetic Light-Activated Ion Channels for Optogenetic Activation and Inhibition". Frontiers in Neuroscience. 12 643. doi:10.3389/fnins.2018.00643. PMC 6176052. PMID 30333716.
- Zhao S, Cunha C, Zhang F, Liu Q, Gloss B, Deisseroth K, et al. (August 2008). "Improved expression of halorhodopsin for light-induced silencing of neuronal activity". Brain Cell Biology. 36 (1–4): 141–154. doi:10.1007/s11068-008-9034-7. PMC 3057022. PMID 18931914.
- Gradinaru V, Thompson KR, Deisseroth K (August 2008). "eNpHR: a Natronomonas halorhodopsin enhanced for optogenetic applications". Brain Cell Biology. 36 (1–4): 129–139. doi:10.1007/s11068-008-9027-6. PMC 2588488. PMID 18677566.
- Witten IB, Lin SC, Brodsky M, Prakash R, Diester I, Anikeeva P, et al. (December 2010). "Cholinergic interneurons control local circuit activity and cocaine conditioning". Science. 330 (6011): 1677–1681. Bibcode:2010Sci...330.1677W. doi:10.1126/science.1193771. PMC 3142356. PMID 21164015.
- Levskaya A, Weiner OD, Lim WA, Voigt CA (October 2009). "Spatiotemporal control of cell signalling using a light-switchable protein interaction". Nature. 461 (7266): 997–1001. Bibcode:2009Natur.461..997L. doi:10.1038/nature08446. PMC 2989900. PMID 19749742.
- Wu YI, Frey D, Lungu OI, Jaehrig A, Schlichting I, Kuhlman B, Hahn KM (September 2009). "A genetically encoded photoactivatable Rac controls the motility of living cells". Nature. 461 (7260): 104–108. Bibcode:2009Natur.461..104W. doi:10.1038/nature08241. PMC 2766670. PMID 19693014.
- Stierl M, Stumpf P, Udwari D, Gueta R, Hagedorn R, Losi A, et al. (January 2011). "Light modulation of cellular cAMP by a small bacterial photoactivated adenylyl cyclase, bPAC, of the soil bacterium Beggiatoa". The Journal of Biological Chemistry. 286 (2): 1181–1188. doi:10.1074/jbc.M110.185496. PMC 3020725. PMID 21030594.
- Ryu MH, Moskvin OV, Siltberg-Liberles J, Gomelsky M (December 2010). "Natural and engineered photoactivated nucleotidyl cyclases for optogenetic applications". The Journal of Biological Chemistry. 285 (53): 41501–41508. doi:10.1074/jbc.M110.177600. PMC 3009876. PMID 21030591.
- Mahn, Mathias; Saraf-Sinik, Inbar; Patil, Pritish; Pulin, Mauro; Bitton, Eyal; Karalis, Nikolaos; Bruentgens, Felicitas; Palgi, Shaked; Gat, Asaf; Dine, Julien; Wietek, Jonas; Davidi, Ido; Levy, Rivka; Litvin, Anna; Zhou, Fangmin (May 2021). "Efficient optogenetic silencing of neurotransmitter release with a mosquito rhodopsin". Neuron. 109 (10): 1621–1635.e8. doi:10.1016/j.neuron.2021.03.013. PMC 7611984. PMID 33979634.
- Lerner TN, Ye L, Deisseroth K (March 2016). "Communication in Neural Circuits: Tools, Opportunities, and Challenges". Cell. 164 (6): 1136–1150. doi:10.1016/j.cell.2016.02.027. PMC 5725393. PMID 26967281.
- Adamantidis AR, Zhang F, Aravanis AM, Deisseroth K, de Lecea L (November 2007). "Neural substrates of awakening probed with optogenetic control of hypocretin neurons". Nature. 450 (7168): 420–424. Bibcode:2007Natur.450..420A. doi:10.1038/nature06310. PMC 6744371. PMID 17943086.
- Gradinaru V, Thompson KR, Zhang F, Mogri M, Kay K, Schneider MB, Deisseroth K (December 2007). "Targeting and readout strategies for fast optical neural control in vitro and in vivo". The Journal of Neuroscience. 27 (52): 14231–14238. doi:10.1523/JNEUROSCI.3578-07.2007. PMC 6673457. PMID 18160630.
- Legaria AA, Matikainen-Ankney BA, Yang B, Ahanonu B, Licholai JA, Parker JG, Kravitz AV (August 30, 2022). "Fiber photometry in striatum reflects primarily nonsomatic changes in calcium". Nature Neuroscience. 25 (9): 1124–1128. doi:10.1038/s41593-022-01152-z. PMC 10152879. PMID 36042311.
- Wentz CT, Bernstein JG, Monahan P, Guerra A, Rodriguez A, Boyden ES (August 2011). "A wirelessly powered and controlled device for optical neural control of freely-behaving animals". Journal of Neural Engineering. 8 (4) 046021. Bibcode:2011JNEng...8d6021W. doi:10.1088/1741-2560/8/4/046021. PMC 3151576. PMID 21701058.
- Pama EA, Colzato LS, Hommel B (2013-01-01). "Optogenetics as a neuromodulation tool in cognitive neuroscience". Frontiers in Psychology. 4: 610. doi:10.3389/fpsyg.2013.00610. PMC 3764402. PMID 24046763.
- Vierock, Johannes; Rodriguez-Rozada, Silvia; Dieter, Alexander; Pieper, Florian; Sims, Ruth; Tenedini, Federico; Bergs, Amelie C. F.; Bendifallah, Imane; Zhou, Fangmin; Zeitzschel, Nadja; Ahlbeck, Joachim (2021-07-26). "BiPOLES is an optogenetic tool developed for bidirectional dual-color control of neurons". Nature Communications. 12 (1): 4527. Bibcode:2021NatCo..12.4527V. doi:10.1038/s41467-021-24759-5. ISSN 2041-1723. PMC 8313717. PMID 34312384.
- Zhang F, Gradinaru V, Adamantidis AR, Durand R, Airan RD, de Lecea L, Deisseroth K (March 2010). "Optogenetic interrogation of neural circuits: technology for probing mammalian brain structures". Nature Protocols. 5 (3): 439–456. doi:10.1038/nprot.2009.226. PMC 4503465. PMID 20203662.
- Zeng H, Madisen L (2012-09-05). "Mouse transgenic approaches in optogenetics". Optogenetics: Tools for Controlling and Monitoring Neuronal Activity. Progress in Brain Research. Vol. 196. pp. 193–213. doi:10.1016/B978-0-444-59426-6.00010-0. ISBN 978-0-444-59426-6. PMC 3433654. PMID 22341327.
- Warden MR, Cardin JA, Deisseroth K (July 2014). "Optical neural interfaces". Annual Review of Biomedical Engineering. 16: 103–129. doi:10.1146/annurev-bioeng-071813-104733. PMC 4163158. PMID 25014785.
- Guru A, Post RJ, Ho YY, Warden MR (July 2015). "Making Sense of Optogenetics". The International Journal of Neuropsychopharmacology. 18 (11) pyv079. doi:10.1093/ijnp/pyv079. PMC 4756725. PMID 26209858.
- Kim CK, Yang SJ, Pichamoorthy N, Young NP, Kauvar I, Jennings JH, Lerner TN, Berndt A, Lee SY, Ramakrishnan C, Davidson TJ, Inoue M, Bito H, Deisseroth K (2016). "Simultaneous fast measurement of circuit dynamics at multiple sites across the mammalian brain". Nat Methods. 13 (4): 325–8. doi:10.1038/nmeth.3770. PMC 5717315. PMID 26878381.
- Cui G, Jun SB, Jin X, Luo G, Pham MD, Lovinger DM, et al. (June 2014). "Deep brain optical measurements of cell type-specific neural activity in behaving mice". Nature Protocols. 9 (6): 1213–1228. doi:10.1038/nprot.2014.080. PMC 4100551. PMID 24784819.
- Heitmann S, Rule M, Truccolo W, Ermentrout B (January 2017). "Optogenetic Stimulation Shifts the Excitability of Cerebral Cortex from Type I to Type II: Oscillation Onset and Wave Propagation". PLOS Computational Biology. 13 (1) e1005349. Bibcode:2017PLSCB..13E5349H. doi:10.1371/journal.pcbi.1005349. PMC 5295702. PMID 28118355.
- Leergaard TB, Hilgetag CC, Sporns O (2012-05-01). "Mapping the connectome: multi-level analysis of brain connectivity". Frontiers in Neuroinformatics. 6: 14. doi:10.3389/fninf.2012.00014. PMC 3340894. PMID 22557964.
- Luboeinski J, Tchumatchenko T (September 2020). "Nonlinear response characteristics of neural networks and single neurons undergoing optogenetic excitation". Network Neuroscience. 4 (3): 852–870. doi:10.1162/netn_a_00154. PMC 7888483. PMID 33615093.
- Kravitz AV, Freeze BS, Parker PR, Kay K, Thwin MT, Deisseroth K, Kreitzer AC (July 2010). "Regulation of parkinsonian motor behaviours by optogenetic control of basal ganglia circuitry". Nature. 466 (7306): 622–626. Bibcode:2010Natur.466..622K. doi:10.1038/nature09159. PMC 3552484. PMID 20613723.
- Gradinaru V, Mogri M, Thompson KR, Henderson JM, Deisseroth K (April 2009). "Optical deconstruction of parkinsonian neural circuitry". Science. 324 (5925): 354–359. Bibcode:2009Sci...324..354G. CiteSeerX 10.1.1.368.668. doi:10.1126/science.1167093. PMC 6744370. PMID 19299587.
- Cardin JA, Carlén M, Meletis K, Knoblich U, Zhang F, Deisseroth K, et al. (June 2009). "Driving fast-spiking cells induces gamma rhythm and controls sensory responses". Nature. 459 (7247): 663–667. Bibcode:2009Natur.459..663C. doi:10.1038/nature08002. PMC 3655711. PMID 19396156.
- Sohal VS, Zhang F, Yizhar O, Deisseroth K (June 2009). "Parvalbumin neurons and gamma rhythms enhance cortical circuit performance". Nature. 459 (7247): 698–702. Bibcode:2009Natur.459..698S. doi:10.1038/nature07991. PMC 3969859. PMID 19396159.
- Tsai HC, Zhang F, Adamantidis A, Stuber GD, Bonci A, de Lecea L, Deisseroth K (May 2009). "Phasic firing in dopaminergic neurons is sufficient for behavioral conditioning". Science. 324 (5930): 1080–1084. Bibcode:2009Sci...324.1080T. doi:10.1126/science.1168878. PMC 5262197. PMID 19389999.
- Haubensak W, Kunwar PS, Cai H, Ciocchi S, Wall NR, Ponnusamy R, et al. (November 2010). "Genetic dissection of an amygdala microcircuit that gates conditioned fear". Nature. 468 (7321): 270–276. Bibcode:2010Natur.468..270H. doi:10.1038/nature09553. PMC 3597095. PMID 21068836.
- Johansen JP, Hamanaka H, Monfils MH, Behnia R, Deisseroth K, Blair HT, LeDoux JE (July 2010). "Optical activation of lateral amygdala pyramidal cells instructs associative fear learning". Proceedings of the National Academy of Sciences of the United States of America. 107 (28): 12692–12697. Bibcode:2010PNAS..10712692J. doi:10.1073/pnas.1002418107. PMC 2906568. PMID 20615999.
- Jasnow AM, Ehrlich DE, Choi DC, Dabrowska J, Bowers ME, McCullough KM, et al. (June 2013). "Thy1-expressing neurons in the basolateral amygdala may mediate fear inhibition". The Journal of Neuroscience. 33 (25): 10396–10404. doi:10.1523/JNEUROSCI.5539-12.2013. PMC 3685835. PMID 23785152.
- Dias BG, Banerjee SB, Goodman JV, Ressler KJ (June 2013). "Towards new approaches to disorders of fear and anxiety". Current Opinion in Neurobiology. 23 (3): 346–352. doi:10.1016/j.conb.2013.01.013. PMC 3672317. PMID 23402950.
- Karalis N, Dejean C, Chaudun F, Khoder S, Rozeske RR, Wurtz H, et al. (April 2016). "4-Hz oscillations synchronize prefrontal-amygdala circuits during fear behavior". Nature Neuroscience. 19 (4): 605–612. doi:10.1038/nn.4251. PMC 4843971. PMID 26878674.
- Smith RS, Hu R, DeSouza A, Eberly CL, Krahe K, Chan W, Araneda RC (July 2015). "Differential Muscarinic Modulation in the Olfactory Bulb". The Journal of Neuroscience. 35 (30): 10773–10785. doi:10.1523/JNEUROSCI.0099-15.2015. PMC 4518052. PMID 26224860.
- Patterson MA, Lagier S, Carleton A (August 2013). "Odor representations in the olfactory bulb evolve after the first breath and persist as an odor afterimage". Proceedings of the National Academy of Sciences of the United States of America. 110 (35): E3340 – E3349. Bibcode:2013PNAS..110E3340P. doi:10.1073/pnas.1303873110. PMC 3761593. PMID 23918364.
- Tecuapetla F, Patel JC, Xenias H, English D, Tadros I, Shah F, et al. (May 2010). "Glutamatergic signaling by mesolimbic dopamine neurons in the nucleus accumbens". The Journal of Neuroscience. 30 (20): 7105–7110. doi:10.1523/JNEUROSCI.0265-10.2010. PMC 3842465. PMID 20484653.
- Cela E, McFarlan AR, Chung AJ, Wang T, Chierzi S, Murai KK, Sjöström PJ (March 2019). "An Optogenetic Kindling Model of Neocortical Epilepsy". Scientific Reports. 9 (1) 5236. Bibcode:2019NatSR...9.5236C. doi:10.1038/s41598-019-41533-2. PMC 6437216. PMID 30918286.
- Ryu B, Nagappan S, Santos-Valencia F, Lee P, Rodriguez E, Lackie M, et al. (April 2021). "Chronic loss of inhibition in piriform cortex following brief, daily optogenetic stimulation". Cell Reports. 35 (3) 109001. doi:10.1016/j.celrep.2021.109001. PMC 8102022. PMID 33882304.
- Nyns EC, Kip A, Bart CI, Plomp JJ, Zeppenfeld K, Schalij MJ, et al. (July 2017). "Optogenetic termination of ventricular arrhythmias in the whole heart: towards biological cardiac rhythm management". European Heart Journal. 38 (27): 2132–2136. doi:10.1093/eurheartj/ehw574. PMC 5837774. PMID 28011703.
- Bruegmann T, Boyle PM, Vogt CC, Karathanos TV, Arevalo HJ, Fleischmann BK, et al. (October 2016). "Optogenetic defibrillation terminates ventricular arrhythmia in mouse hearts and human simulations". The Journal of Clinical Investigation. 126 (10): 3894–3904. doi:10.1172/JCI88950. PMC 5096832. PMID 27617859.
- Crocini C, Ferrantini C, Coppini R, Scardigli M, Yan P, Loew LM, et al. (October 2016). "Optogenetics design of mechanistically-based stimulation patterns for cardiac defibrillation". Scientific Reports. 6 35628. Bibcode:2016NatSR...635628C. doi:10.1038/srep35628. PMC 5066272. PMID 27748433.
- Hernandez VH, Gehrt A, Reuter K, Jing Z, Jeschke M, Mendoza Schulz A, et al. (March 2014). "Optogenetic stimulation of the auditory pathway". The Journal of Clinical Investigation. 124 (3): 1114–1129. doi:10.1172/JCI69050. PMC 3934189. PMID 24509078.
- Keppeler D, Merino RM, Lopez de la Morena D, Bali B, Huet AT, Gehrt A, et al. (December 2018). "Ultrafast optogenetic stimulation of the auditory pathway by targeting-optimized Chronos". The EMBO Journal. 37 (24) e99649. doi:10.15252/embj.201899649. PMC 6293277. PMID 30396994.
- Mager T, Lopez de la Morena D, Senn V, Schlotte J, D Errico A, Feldbauer K, et al. (May 2018). "High frequency neural spiking and auditory signaling by ultrafast red-shifted optogenetics". Nature Communications. 9 (1) 1750. Bibcode:2018NatCo...9.1750M. doi:10.1038/s41467-018-04146-3. PMC 5931537. PMID 29717130.
- Lin JY, Knutsen PM, Muller A, Kleinfeld D, Tsien RY (October 2013). "ReaChR: a red-shifted variant of channelrhodopsin enables deep transcranial optogenetic excitation". Nature Neuroscience. 16 (10): 1499–1508. doi:10.1038/nn.3502. PMC 3793847. PMID 23995068.
- Matthews GA, Nieh EH, Vander Weele CM, Halbert SA, Pradhan RV, Yosafat AS, et al. (February 2016). "Dorsal Raphe Dopamine Neurons Represent the Experience of Social Isolation". Cell. 164 (4): 617–631. doi:10.1016/j.cell.2015.12.040. PMC 4752823. PMID 26871628.
- Klapoetke NC, Murata Y, Kim SS, Pulver SR, Birdsey-Benson A, Cho YK, et al. (March 2014). "Independent optical excitation of distinct neural populations". Nature Methods. 11 (3): 338–346. doi:10.1038/nmeth.2836. PMC 3943671. PMID 24509633.
- Govorunova EG, Sineshchekov OA, Janz R, Liu X, Spudich JL (August 2015). "NEUROSCIENCE. Natural light-gated anion channels: A family of microbial rhodopsins for advanced optogenetics". Science. 349 (6248): 647–650. doi:10.1126/science.aaa7484. PMC 4764398. PMID 26113638.
- Mauss AS, Busch C, Borst A (October 2017). "Optogenetic Neuronal Silencing in Drosophila during Visual Processing". Scientific Reports. 7 (1) 13823. Bibcode:2017NatSR...713823M. doi:10.1038/s41598-017-14076-7. PMC 5653863. PMID 29061981.
- Cande, Jessica; Namiki, Shigehiro; Qiu, Jirui; Korff, Wyatt; Card, Gwyneth M; Shaevitz, Joshua W; Stern, David L; Berman, Gordon J (2018-06-26). Scott, Kristin (ed.). "Optogenetic dissection of descending behavioral control in Drosophila". eLife. 7 e34275. doi:10.7554/eLife.34275. ISSN 2050-084X. PMC 6031430. PMID 29943729.
- DeAngelis, Brian D; Zavatone-Veth, Jacob A; Gonzalez-Suarez, Aneysis D; Clark, Damon A (2020-04-22). Calabrese, Ronald L (ed.). "Spatiotemporally precise optogenetic activation of sensory neurons in freely walking Drosophila". eLife. 9 e54183. doi:10.7554/eLife.54183. ISSN 2050-084X. PMC 7198233. PMID 32319425.
- Bidaye, Salil S.; Laturney, Meghan; Chang, Amy K.; Liu, Yuejiang; Bockemühl, Till; Büschges, Ansgar; Scott, Kristin (2020-11-11). "Two Brain Pathways Initiate Distinct Forward Walking Programs in Drosophila". Neuron. 108 (3): 469–485.e8. doi:10.1016/j.neuron.2020.07.032. ISSN 0896-6273. PMC 9435592. PMID 32822613. S2CID 221198570.
- Heiney, Shane A.; Kim, Jinsook; Augustine, George J.; Medina, Javier F. (2014-02-05). "Precise Control of Movement Kinematics by Optogenetic Inhibition of Purkinje Cell Activity". Journal of Neuroscience. 34 (6): 2321–2330. doi:10.1523/JNEUROSCI.4547-13.2014. ISSN 0270-6474. PMC 3913874. PMID 24501371.
- Solari N, Sviatkó K, Laszlovszky T, Hegedüs P, Hangya B (May 2018). "Open Source Tools for Temporally Controlled Rodent Behavior Suitable for Electrophysiology and Optogenetic Manipulations". Frontiers in Systems Neuroscience. 12 18. doi:10.3389/fnsys.2018.00018. PMC 5962774. PMID 29867383.
- Lin JY (January 2011). "A user's guide to channelrhodopsin variants: features, limitations and future developments". Experimental Physiology. 96 (1): 19–25. doi:10.1113/expphysiol.2009.051961. PMC 2995811. PMID 20621963.
- Grosenick, Logan; Marshel, James H.; Deisseroth, Karl (2015-04-08). "Closed-Loop and Activity-Guided Optogenetic Control". Neuron. 86 (1): 106–139. doi:10.1016/j.neuron.2015.03.034. ISSN 0896-6273. PMC 4775736. PMID 25856490.
- Armstrong, Caren; Krook-Magnuson, Esther; Oijala, Mikko; Soltesz, Ivan (2013). "Closed-loop optogenetic intervention in mice". Nature Protocols. 8 (8): 1475–1493. doi:10.1038/nprot.2013.080. ISSN 1750-2799. PMC 3988315. PMID 23845961.
- Kovács KA, O'Neill J, Schoenenberger P, Penttonen M, Ranguel Guerrero DK, Csicsvari J (19 Nov 2016). "Optogenetically Blocking Sharp Wave Ripple Events in Sleep Does Not Interfere with the Formation of Stable Spatial Representation in the CA1 Area of the Hippocampus". PLOS ONE. 11 (10) e0164675. Bibcode:2016PLoSO..1164675K. doi:10.1371/journal.pone.0164675. PMC 5070819. PMID 27760158.
- Valon L, Marín-Llauradó A, Wyatt T, Charras G, Trepat X (February 2017). "Optogenetic control of cellular forces and mechanotransduction". Nature Communications. 8 14396. Bibcode:2017NatCo...814396V. doi:10.1038/ncomms14396. PMC 5309899. PMID 28186127.
- Fenno L, Yizhar O, Deisseroth K (2011). "The development and application of optogenetics". Annual Review of Neuroscience. 34: 389–412. doi:10.1146/annurev-neuro-061010-113817. PMC 6699620. PMID 21692661.
- Wittmann T, Dema A, van Haren J (October 2020). "Lights, cytoskeleton, action: Optogenetic control of cell dynamics". Current Opinion in Cell Biology. 66. Elsevier Ltd.: 1–10. doi:10.1016/j.ceb.2020.03.003. PMC 7577957. PMID 32371345.
- Konermann S, Brigham MD, Trevino A, Hsu PD, Heidenreich M, Cong L, et al. (August 2013). "Optical control of mammalian endogenous transcription and epigenetic states". Nature. 500 (7463): 472–476. Bibcode:2013Natur.500..472K. doi:10.1038/nature12466. PMC 3856241. PMID 23877069.
- Leung DW, Otomo C, Chory J, Rosen MK (September 2008). "Genetically encoded photoswitching of actin assembly through the Cdc42-WASP-Arp2/3 complex pathway". Proceedings of the National Academy of Sciences of the United States of America. 105 (35): 12797–12802. Bibcode:2008PNAS..10512797L. doi:10.1073/pnas.0801232105. PMC 2525560. PMID 18728185.
- Toettcher JE, Gong D, Lim WA, Weiner OD (September 2011). "Light-based feedback for controlling intracellular signaling dynamics". Nature Methods. 8 (10): 837–839. doi:10.1038/nmeth.1700. PMC 3184382. PMID 21909100.
- Strickland D, Lin Y, Wagner E, Hope CM, Zayner J, Antoniou C, et al. (March 2012). "TULIPs: tunable, light-controlled interacting protein tags for cell biology". Nature Methods. 9 (4): 379–384. doi:10.1038/nmeth.1904. PMC 3444151. PMID 22388287.
- Idevall-Hagren O, Dickson EJ, Hille B, Toomre DK, De Camilli P (August 2012). "Optogenetic control of phosphoinositide metabolism". Proceedings of the National Academy of Sciences of the United States of America. 109 (35): E2316 – E2323. Bibcode:2012PNAS..109E2316I. doi:10.1073/pnas.1211305109. PMC 3435206. PMID 22847441.
- Lungu OI, Hallett RA, Choi EJ, Aiken MJ, Hahn KM, Kuhlman B (April 2012). "Designing photoswitchable peptides using the AsLOV2 domain". Chemistry & Biology. 19 (4): 507–517. doi:10.1016/j.chembiol.2012.02.006. PMC 3334866. PMID 22520757.
- Wu YI, Frey D, Lungu OI, Jaehrig A, Schlichting I, Kuhlman B, Hahn KM (September 2009). "A genetically encoded photoactivatable Rac controls the motility of living cells". Nature. 461 (7260): 104–108. Bibcode:2009Natur.461..104W. doi:10.1038/nature08241. PMC 2766670. PMID 19693014.
- Smart AD, Pache RA, Thomsen ND, Kortemme T, Davis GW, Wells JA (September 2017). "Engineering a light-activated caspase-3 for precise ablation of neurons in vivo". Proceedings of the National Academy of Sciences of the United States of America. 114 (39): E8174 – E8183. Bibcode:2017PNAS..114E8174S. doi:10.1073/pnas.1705064114. PMC 5625904. PMID 28893998.
- Dagliyan O, Tarnawski M, Chu PH, Shirvanyants D, Schlichting I, Dokholyan NV, Hahn KM (December 2016). "Engineering extrinsic disorder to control protein activity in living cells". Science. 354 (6318): 1441–1444. Bibcode:2016Sci...354.1441D. doi:10.1126/science.aah3404. PMC 5362825. PMID 27980211.
- Guntas G, Hallett RA, Zimmerman SP, Williams T, Yumerefendi H, Bear JE, Kuhlman B (January 2015). "Engineering an improved light-induced dimer (iLID) for controlling the localization and activity of signaling proteins". Proceedings of the National Academy of Sciences of the United States of America. 112 (1): 112–117. Bibcode:2015PNAS..112..112G. doi:10.1073/pnas.1417910112. PMC 4291625. PMID 25535392.
- Wang H, Vilela M, Winkler A, Tarnawski M, Schlichting I, Yumerefendi H, et al. (September 2016). "LOVTRAP: an optogenetic system for photoinduced protein dissociation". Nature Methods. 13 (9): 755–758. doi:10.1038/nmeth.3926. PMC 5137947. PMID 27427858.
- van Haren J, Charafeddine RA, Ettinger A, Wang H, Hahn KM, Wittmann T (March 2018). "Local control of intracellular microtubule dynamics by EB1 photodissociation". Nature Cell Biology. 20 (3). Nature Research.: 252–261. doi:10.1038/s41556-017-0028-5. PMC 5826794. PMID 29379139.
- Zhou XX, Chung HK, Lam AJ, Lin MZ (November 2012). "Optical control of protein activity by fluorescent protein domains". Science. 338 (6108): 810–814. Bibcode:2012Sci...338..810Z. doi:10.1126/science.1226854. PMC 3702057. PMID 23139335.
- Tischer D, Weiner OD (August 2014). "Illuminating cell signalling with optogenetic tools". Nature Reviews. Molecular Cell Biology. 15 (8): 551–558. doi:10.1038/nrm3837. PMC 4145075. PMID 25027655.
- Purvis JE, Lahav G (February 2013). "Encoding and decoding cellular information through signaling dynamics". Cell. 152 (5): 945–956. doi:10.1016/j.cell.2013.02.005. PMC 3707615. PMID 23452846.
- Toettcher JE, Weiner OD, Lim WA (December 2013). "Using optogenetics to interrogate the dynamic control of signal transmission by the Ras/Erk module". Cell. 155 (6): 1422–1434. doi:10.1016/j.cell.2013.11.004. PMC 3925772. PMID 24315106.
- Huidobro N, Mendez-Fernandez A, Mendez-Balbuena I, Gutierrez R, Kristeva R, Manjarrez E (2017). "Brownian Optogenetic-Noise-Photostimulation on the Brain Amplifies Somatosensory-Evoked Field Potentials". Frontiers in Neuroscience. 11 464. doi:10.3389/fnins.2017.00464. PMC 5583167. PMID 28912671.
- Mabil P, Huidobro N, Torres-Ramirez O, Flores-Hernandez J, Flores A, Gutierrez R, Manjarrez E (2020). "Noisy Light Augments the Na+ Current in Somatosensory Pyramidal Neurons of Optogenetic Transgenic Mice". Frontiers in Neuroscience. 14 490. doi:10.3389/fnins.2020.00490. PMC 7263390. PMID 32528244.
ninds.nih.gov
- NIH blueprint for neuroscience: Cre driver network. https://www.ninds.nih.gov/current-research/trans-agency-activities/nih-blueprint-neuroscience-research
nytimes.com (Global: 7th place; English: 7th place)
- Zimmer C (24 May 2021). "Scientists Partially Restored a Blind Man's Sight With New Gene Therapy". The New York Times. Retrieved 25 May 2021.
psu.edu (Global: 207th place; English: 136th place)
citeseerx.ist.psu.edu
- Gradinaru V, Mogri M, Thompson KR, Henderson JM, Deisseroth K (April 2009). "Optical deconstruction of parkinsonian neural circuitry". Science. 324 (5925): 354–359. Bibcode:2009Sci...324..354G. CiteSeerX 10.1.1.368.668. doi:10.1126/science.1167093. PMC 6744370. PMID 19299587.
sciencedirect.com (Global: 149th place; English: 178th place)
- Portugues, Ruben; Severi, Kristen E; Wyart, Claire; Ahrens, Misha B (2013-02-01). "Optogenetics in a transparent animal: circuit function in the larval zebrafish". Current Opinion in Neurobiology. Neurogenetics. 23 (1): 119–126. doi:10.1016/j.conb.2012.11.001. ISSN 0959-4388. PMID 23246238. S2CID 19906279.
scientificamerican.com (Global: 896th place; English: 674th place)
- Deisseroth K (20 October 2010). "Optogenetics: Controlling the Brain with Light". Scientific American. Springer Nature America, Inc.
- Deisseroth K. "Optogenetics: Controlling the Brain with Light [Extended Version]". Scientific American. Retrieved 2016-11-28.
semanticscholar.org (Global: 11th place; English: 8th place)
api.semanticscholar.org
- Shimizu-Sato S, Huq E, Tepperman JM, Quail PH (October 2002). "A light-switchable gene promoter system". Nature Biotechnology. 20 (10): 1041–1044. doi:10.1038/nbt734. PMID 12219076. S2CID 24914960.
- Feng, Kai; Sen, Rajyashree; Minegishi, Ryo; Dübbert, Michael; Bockemühl, Till; Büschges, Ansgar; Dickson, Barry J. (2020-12-02). "Distributed control of motor circuits for backward walking in Drosophila". Nature Communications. 11 (1): 6166. Bibcode:2020NatCo..11.6166F. doi:10.1038/s41467-020-19936-x. ISSN 2041-1723. PMC 7710706. PMID 33268800. S2CID 227255627.
- Primer on Optogenetics: Pastrana E (2010). "Optogenetics: Controlling cell function with light". Nature Methods. 8 (1): 24–25. doi:10.1038/nmeth.f.323. S2CID 5808517.
Editorial: "Method of the Year 2010". Nature Methods. 8 (1): 1. 2010. doi:10.1038/nmeth.f.321.
Commentary: Deisseroth K (January 2011). "Optogenetics". Nature Methods. 8 (1): 26–29. doi:10.1038/nmeth.f.324. PMC 6814250. PMID 21191368. - News Staff (December 2010). "Insights of the decade. Stepping away from the trees for a look at the forest. Introduction". Science. 330 (6011): 1612–1613. Bibcode:2010Sci...330.1612.. doi:10.1126/science.330.6011.1612. PMID 21163985. S2CID 206593135.
- Zemelman BV, Lee GA, Ng M, Miesenböck G (January 2002). "Selective photostimulation of genetically chARGed neurons". Neuron. 33 (1): 15–22. doi:10.1016/S0896-6273(01)00574-8. PMID 11779476. S2CID 16391269.
- Harz H, Hegemann P (1991-06-06). "Rhodopsin-regulated calcium currents in Chlamydomonas". Nature. 351 (6326): 489–491. Bibcode:1991Natur.351..489H. doi:10.1038/351489a0. S2CID 4309593.
- Nagel G, Ollig D, Fuhrmann M, Kateriya S, Musti AM, Bamberg E, Hegemann P (June 2002). "Channelrhodopsin-1: a light-gated proton channel in green algae". Science. 296 (5577): 2395–2398. Bibcode:2002Sci...296.2395N. doi:10.1126/science.1072068. PMID 12089443. S2CID 206506942.
- Boyden ES, Zhang F, Bamberg E, Nagel G, Deisseroth K (September 2005). "Millisecond-timescale, genetically targeted optical control of neural activity". Nature Neuroscience. 8 (9): 1263–1268. doi:10.1038/nn1525. PMID 16116447. S2CID 6809511.
- Lima SQ, Miesenböck G (April 2005). "Remote control of behavior through genetically targeted photostimulation of neurons". Cell. 121 (1): 141–152. doi:10.1016/j.cell.2005.02.004. PMID 15820685. S2CID 14608546.
- Nagel G, Brauner M, Liewald JF, Adeishvili N, Bamberg E, Gottschalk A (December 2005). "Light activation of channelrhodopsin-2 in excitable cells of Caenorhabditis elegans triggers rapid behavioral responses". Current Biology. 15 (24): 2279–2284. Bibcode:2005CBio...15.2279N. doi:10.1016/j.cub.2005.11.032. PMID 16360690. S2CID 7036529.
- Tsien JZ, Chen DF, Gerber D, Tom C, Mercer EH, Anderson DJ, et al. (December 1996). "Subregion- and cell type-restricted gene knockout in mouse brain". Cell. 87 (7): 1317–1326. doi:10.1016/S0092-8674(00)81826-7. PMID 8980237. S2CID 863399.
- Zhang F, Wang LP, Brauner M, Liewald JF, Kay K, Watzke N, et al. (April 2007). "Multimodal fast optical interrogation of neural circuitry". Nature. 446 (7136): 633–639. Bibcode:2007Natur.446..633Z. doi:10.1038/nature05744. PMID 17410168. S2CID 4415339.
- Schröder-Lang S, Schwärzel M, Seifert R, Strünker T, Kateriya S, Looser J, et al. (January 2007). "Fast manipulation of cellular cAMP level by light in vivo". Nature Methods. 4 (1): 39–42. doi:10.1038/nmeth975. PMID 17128267. S2CID 10616442.
- Baratta MV, Nakamura S, Dobelis P, Pomrenze MB, Dolzani SD, Cooper DC (2 April 2012). "Optogenetic control of genetically-targeted pyramidal neuron activity in prefrontal cortex" (PDF). Nature Precedings. arXiv:1204.0710. Bibcode:2012arXiv1204.0710B. doi:10.1038/npre.2012.7102.1. S2CID 31641314.
- Airan RD, Thompson KR, Fenno LE, Bernstein H, Deisseroth K (April 2009). "Temporally precise in vivo control of intracellular signalling". Nature. 458 (7241): 1025–1029. Bibcode:2009Natur.458.1025A. doi:10.1038/nature07926. PMID 19295515. S2CID 4401796.
- Yazawa M, Sadaghiani AM, Hsueh B, Dolmetsch RE (October 2009). "Induction of protein-protein interactions in live cells using light". Nature Biotechnology. 27 (10): 941–945. doi:10.1038/nbt.1569. PMID 19801976. S2CID 205274357.
- Aravanis AM, Wang LP, Zhang F, Meltzer LA, Mogri MZ, Schneider MB, Deisseroth K (September 2007). "An optical neural interface: in vivo control of rodent motor cortex with integrated fiberoptic and optogenetic technology". Journal of Neural Engineering. 4 (3): S143 – S156. Bibcode:2007JNEng...4S.143A. doi:10.1088/1741-2560/4/3/S02. PMID 17873414. S2CID 1488394.
- Damestani Y, Reynolds CL, Szu J, Hsu MS, Kodera Y, Binder DK, et al. (November 2013). "Transparent nanocrystalline yttria-stabilized-zirconia calvarium prosthesis". Nanomedicine. 9 (8): 1135–1138. doi:10.1016/j.nano.2013.08.002. PMID 23969102. S2CID 14212180. • Explained by Mohan G (September 4, 2013). "A window to the brain? It's here, says UC Riverside team". Los Angeles Times.
- Zhang, Yan-Ping; Oertner, Thomas G (2007). "Optical induction of synaptic plasticity using a light-sensitive channel". Nature Methods. 4 (2): 139–141. doi:10.1038/nmeth988. ISSN 1548-7091. PMID 17195846. S2CID 17721823.
- Shusterman R, Smear MC, Koulakov AA, Rinberg D (July 2011). "Precise olfactory responses tile the sniff cycle". Nature Neuroscience. 14 (8): 1039–1044. doi:10.1038/nn.2877. PMID 21765422. S2CID 5194595.
- Nussinovitch U, Gepstein L (July 2015). "Optogenetics for in vivo cardiac pacing and resynchronization therapies". Nature Biotechnology. 33 (7): 750–754. doi:10.1038/nbt.3268. PMID 26098449. S2CID 1794556.
- Moser T (October 2015). "Optogenetic stimulation of the auditory pathway for research and future prosthetics". Current Opinion in Neurobiology. 34: 29–36. doi:10.1016/j.conb.2015.01.004. PMID 25637880. S2CID 35199775.
- Berndt A, Yizhar O, Gunaydin LA, Hegemann P, Deisseroth K (February 2009). "Bi-stable neural state switches". Nature Neuroscience. 12 (2): 229–234. doi:10.1038/nn.2247. PMID 19079251. S2CID 15125498.
- Portugues, Ruben; Severi, Kristen E; Wyart, Claire; Ahrens, Misha B (2013-02-01). "Optogenetics in a transparent animal: circuit function in the larval zebrafish". Current Opinion in Neurobiology. Neurogenetics. 23 (1): 119–126. doi:10.1016/j.conb.2012.11.001. ISSN 0959-4388. PMID 23246238. S2CID 19906279.
- Bidaye, Salil S.; Laturney, Meghan; Chang, Amy K.; Liu, Yuejiang; Bockemühl, Till; Büschges, Ansgar; Scott, Kristin (2020-11-11). "Two Brain Pathways Initiate Distinct Forward Walking Programs in Drosophila". Neuron. 108 (3): 469–485.e8. doi:10.1016/j.neuron.2020.07.032. ISSN 0896-6273. PMC 9435592. PMID 32822613. S2CID 221198570.
- Bugaj LJ, Choksi AT, Mesuda CK, Kane RS, Schaffer DV (March 2013). "Optogenetic protein clustering and signaling activation in mammalian cells". Nature Methods. 10 (3): 249–252. doi:10.1038/nmeth.2360. PMID 23377377. S2CID 8737019.
- Santos SD, Verveer PJ, Bastiaens PI (March 2007). "Growth factor-induced MAPK network topology shapes Erk response determining PC-12 cell fate". Nature Cell Biology. 9 (3): 324–330. doi:10.1038/ncb1543. PMID 17310240. S2CID 31709706.
- Huidobro N, De la Torre-Valdovinos B, Mendez A, Treviño M, Arias-Carrion O, Chavez F, et al. (January 2018). "Optogenetic noise-photostimulation on the brain increases somatosensory spike firing responses". Neuroscience Letters. 664: 51–57. doi:10.1016/j.neulet.2017.11.004. PMID 29128628. S2CID 3370851.
- Reiner A, Isacoff EY (October 2013). "The Brain Prize 2013: the optogenetics revolution". Trends in Neurosciences. 36 (10): 557–560. doi:10.1016/j.tins.2013.08.005. PMID 24054067. S2CID 205404606.
sfn.org (Global: low place; English: low place)
- Zalocusky KA, Fenno LE, Deisseroth K (2013). "Current Challenges in Optogenetics". Society for Neuroscience.
shawprize.org (Global: low place; English: low place)
statnews.com (Global: 8,771st place; English: 5,253rd place)
- "He may be the rightful inventor of neuroscience's biggest breakthrough in decades. But you've never heard of him". STAT. 1 September 2016. Retrieved 9 February 2020.
thebrainprize.org (Global: low place; English: low place)
- "The Brain Prize 2013". Archived from the original on 4 October 2013. Retrieved 3 October 2013.
web.archive.org (Global: 1st place; English: 1st place)
- "Louis-Jeantet Prize". Archived from the original on 2020-03-27. Retrieved 2020-07-22.
- "The Brain Prize 2013". Archived from the original on 4 October 2013. Retrieved 3 October 2013.
wiley.com (Global: 222nd place; English: 297th place)
eu.wiley.com
worldcat.org (Global: 5th place; English: 5th place)
search.worldcat.org
- Musso, Pierre-Yves; Junca, Pierre; Jelen, Meghan; Feldman-Kiss, Damian; Zhang, Han; Chan, Rachel CW; Gordon, Michael D (2019-07-19). Ramaswami, Mani; Dulac, Catherine (eds.). "Closed-loop optogenetic activation of peripheral or central neurons modulates feeding in freely moving Drosophila". eLife. 8 e45636. doi:10.7554/eLife.45636. ISSN 2050-084X. PMC 6668987. PMID 31322499.
- Feng, Kai; Sen, Rajyashree; Minegishi, Ryo; Dübbert, Michael; Bockemühl, Till; Büschges, Ansgar; Dickson, Barry J. (2020-12-02). "Distributed control of motor circuits for backward walking in Drosophila". Nature Communications. 11 (1): 6166. Bibcode:2020NatCo..11.6166F. doi:10.1038/s41467-020-19936-x. ISSN 2041-1723. PMC 7710706. PMID 33268800. S2CID 227255627.
- Lim, Diana; LeDue, Jeffrey; Mohajerani, Majid; Vanni, Matthieu; Murphy, Timothy (2013). "Optogenetic approaches for functional mouse brain mapping". Frontiers in Neuroscience. 7: 54. doi:10.3389/fnins.2013.00054. ISSN 1662-453X. PMC 3622058. PMID 23596383.
- Lee, Candice; Lavoie, Andreanne; Liu, Jiashu; Chen, Simon X.; Liu, Bao-hua (2020). "Light Up the Brain: The Application of Optogenetics in Cell-Type Specific Dissection of Mouse Brain Circuits". Frontiers in Neural Circuits. 14 18. doi:10.3389/fncir.2020.00018. ISSN 1662-5110. PMC 7193678. PMID 32390806.
- Franconville, Romain; Beron, Celia; Jayaraman, Vivek (2018-08-20). VijayRaghavan, K; Scott, Kristin; Heinze, Stanley (eds.). "Building a functional connectome of the Drosophila central complex". eLife. 7 e37017. doi:10.7554/eLife.37017. ISSN 2050-084X. PMC 6150698. PMID 30124430.
- Chen, Chenghao; Agrawal, Sweta; Mark, Brandon; Mamiya, Akira; Sustar, Anne; Phelps, Jasper S.; Lee, Wei-Chung Allen; Dickson, Barry J.; Card, Gwyneth M.; Tuthill, John C. (2021-12-06). "Functional architecture of neural circuits for leg proprioception in Drosophila". Current Biology. 31 (23): 5163–5175.e7. Bibcode:2021CBio...31E5163C. doi:10.1016/j.cub.2021.09.035. ISSN 0960-9822. PMC 8665017. PMID 34637749.
- Nagel, G.; Möckel, B.; Büldt, G.; Bamberg, E. (1995-12-18). "Functional expression of bacteriorhodopsin in oocytes allows direct measurement of voltage dependence of light induced H+ pumping". FEBS Letters. 377 (2): 263–266. doi:10.1016/0014-5793(95)01356-3. ISSN 0014-5793. PMID 8543064.
- Han X, Boyden ES (March 2007). "Multiple-color optical activation, silencing, and desynchronization of neural activity, with single-spike temporal resolution". PLOS ONE. 2 (3) e299. Public Library of Science. Bibcode:2007PLoSO...2..299H. doi:10.1371/journal.pone.0000299. OCLC 678618519. PMC 1808431. PMID 17375185.
- Vierock, Johannes; Rodriguez-Rozada, Silvia; Dieter, Alexander; Pieper, Florian; Sims, Ruth; Tenedini, Federico; Bergs, Amelie C. F.; Bendifallah, Imane; Zhou, Fangmin; Zeitzschel, Nadja; Ahlbeck, Joachim (2021-07-26). "BiPOLES is an optogenetic tool developed for bidirectional dual-color control of neurons". Nature Communications. 12 (1): 4527. Bibcode:2021NatCo..12.4527V. doi:10.1038/s41467-021-24759-5. ISSN 2041-1723. PMC 8313717. PMID 34312384.
- Zhang, Yan-Ping; Oertner, Thomas G (2007). "Optical induction of synaptic plasticity using a light-sensitive channel". Nature Methods. 4 (2): 139–141. doi:10.1038/nmeth988. ISSN 1548-7091. PMID 17195846. S2CID 17721823.
- Portugues, Ruben; Severi, Kristen E; Wyart, Claire; Ahrens, Misha B (2013-02-01). "Optogenetics in a transparent animal: circuit function in the larval zebrafish". Current Opinion in Neurobiology. Neurogenetics. 23 (1): 119–126. doi:10.1016/j.conb.2012.11.001. ISSN 0959-4388. PMID 23246238. S2CID 19906279.
- Cande, Jessica; Namiki, Shigehiro; Qiu, Jirui; Korff, Wyatt; Card, Gwyneth M; Shaevitz, Joshua W; Stern, David L; Berman, Gordon J (2018-06-26). Scott, Kristin (ed.). "Optogenetic dissection of descending behavioral control in Drosophila". eLife. 7 e34275. doi:10.7554/eLife.34275. ISSN 2050-084X. PMC 6031430. PMID 29943729.
- DeAngelis, Brian D; Zavatone-Veth, Jacob A; Gonzalez-Suarez, Aneysis D; Clark, Damon A (2020-04-22). Calabrese, Ronald L (ed.). "Spatiotemporally precise optogenetic activation of sensory neurons in freely walking Drosophila". eLife. 9 e54183. doi:10.7554/eLife.54183. ISSN 2050-084X. PMC 7198233. PMID 32319425.
- Bidaye, Salil S.; Laturney, Meghan; Chang, Amy K.; Liu, Yuejiang; Bockemühl, Till; Büschges, Ansgar; Scott, Kristin (2020-11-11). "Two Brain Pathways Initiate Distinct Forward Walking Programs in Drosophila". Neuron. 108 (3): 469–485.e8. doi:10.1016/j.neuron.2020.07.032. ISSN 0896-6273. PMC 9435592. PMID 32822613. S2CID 221198570.
- Heiney, Shane A.; Kim, Jinsook; Augustine, George J.; Medina, Javier F. (2014-02-05). "Precise Control of Movement Kinematics by Optogenetic Inhibition of Purkinje Cell Activity". Journal of Neuroscience. 34 (6): 2321–2330. doi:10.1523/JNEUROSCI.4547-13.2014. ISSN 0270-6474. PMC 3913874. PMID 24501371.
- Grosenick, Logan; Marshel, James H.; Deisseroth, Karl (2015-04-08). "Closed-Loop and Activity-Guided Optogenetic Control". Neuron. 86 (1): 106–139. doi:10.1016/j.neuron.2015.03.034. ISSN 0896-6273. PMC 4775736. PMID 25856490.
- Armstrong, Caren; Krook-Magnuson, Esther; Oijala, Mikko; Soltesz, Ivan (2013). "Closed-loop optogenetic intervention in mice". Nature Protocols. 8 (8): 1475–1493. doi:10.1038/nprot.2013.080. ISSN 1750-2799. PMC 3988315. PMID 23845961.
youtube.com (Global: 9th place; English: 13th place)
- "Method of the Year 2010: Optogenetics". Nature Video. 17 December 2010.
- "Method of the Year 2010: Optogenetics". Nature Video. 17 December 2010.