PANTHER (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "PANTHER" in English language version.

refsWebsite

Global rank English rank

26nih.gov

4^th place

13doi.org

2^nd place

2pantherdb.org

low place

1geneontology.org

low place

1ebi.ac.uk

5,849^th place

7,886^th place

doi.org

Thomas, PD.; Kejariwal, A.; Campbell, MJ.; Mi, H.; Diemer, K.; Guo, N.; Ladunga, I.; Ulitsky-Lazareva, B.; et al. (Jan 2003). "PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification". Nucleic Acids Res. 31 (1): 334–41. doi:10.1093/nar/gkg115. PMC 165562. PMID 12520017.
Mi, H.; Muruganujan, A.; Thomas, PD. (Jan 2013). "PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees". Nucleic Acids Res. 41 (Database issue): D377–86. doi:10.1093/nar/gks1118. PMC 3531194. PMID 23193289.
Hunter, S.; Jones, P.; Mitchell, A.; Apweiler, R.; Attwood, TK.; Bateman, A.; Bernard, T.; Binns, D.; et al. (Jan 2012). "InterPro in 2011: new developments in the family and domain prediction database". Nucleic Acids Res. 40 (Database issue): D306–12. doi:10.1093/nar/gkr948. PMC 3245097. PMID 22096229.
Mi, H.; Muruganujan, A.; Thomas, PD. (Aug 2013). "Large-scale gene function analysis with the PANTHER classification system". Nucleic Acids Res. 8 (8): 1551–66. doi:10.1038/nprot.2013.092. PMC 6519453. PMID 23868073.
Mi, H; Huang, X; Muruganujan, A; Tang, H; Mills, C; Kang, D; Thomas, PD (29 November 2016). "PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements". Nucleic Acids Research. 45 (D1): D183–D189. doi:10.1093/nar/gkw1138. PMC 5210595. PMID 27899595.
The UniProt Consortium (Jan 2012). "Reorganizing the protein space at the Universal Protein Resource (UniProt)". Nucleic Acids Res. 40 (D1): D71–D75. doi:10.1093/nar/gkr981. PMC 3245120. PMID 22102590.
Gaudet, P.; Livstone, M.S.; Lewis, S.E.; Thomas, P.D. (Sep 2011). "Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium". Brief Bioinform. 12 (5): 449–62. doi:10.1093/bib/bbr042. PMC 3178059. PMID 21873635.
Gene Ontology Consortium (Jan 2012). "The Gene Ontology: enhancements for 2011". Nucleic Acids Res. 40 (D1): D559–D564. doi:10.1093/nar/gkr1028. PMC 3245151. PMID 22102568.
Wu, C.H.; Apweiler, R.; Bairoch, A.; Natale, D.A.; Barker, W.C.; Boeckmann, B.; Ferro, S.; Gasteiger, E.; et al. (Jan 2006). "The Universal Protein Resource (UniProt): an expanding universe of protein information". Nucleic Acids Res. 34 (Database issue): D187–D191. doi:10.1093/nar/gkj161. PMC 1347523. PMID 16381842.
Mi, H.; Guo, N.; Thomas, P.D. (Jan 2007). "PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways". Nucleic Acids Res. 35 (Database issue): D247–D252. doi:10.1093/nar/gkl869. PMC 1716723. PMID 17130144.
Flicek, P.; Amode, M.R.; Barrell, D.; Beal, K.; Brent, S.; Chen, Y.; Clapham, P.; Coates, G.; et al. (Jan 2011). "Ensembl". Nucleic Acids Res. 39 (Database issue): D800–D806. doi:10.1093/nar/gkq1064. PMC 3013672. PMID 21045057.
Maglott, D.; Ostell, J.; Pruitt, K.D.; Tatusova, T. (Jan 2011). "Entrez Gene: gene-centered information at NCBI". Nucleic Acids Res. 39 (Database issue): D52–D57. doi:10.1093/nar/gkq1237. PMC 3013746. PMID 21115458.
Mi, H.; Dong, Q.; Muruganujan, A.; Gaudet, P.; Lewis, S.; Thomas, P.D. (Jan 2010). "PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium". Nucleic Acids Res. 38 (Database issue): D204–D210. doi:10.1093/nar/gkp1019. PMC 2808919. PMID 20015972.

ebi.ac.uk

"reference proteome".

geneontology.org

"GO Reference Genome Annotation Project".

nih.gov

ncbi.nlm.nih.gov

Thomas, PD.; Kejariwal, A.; Campbell, MJ.; Mi, H.; Diemer, K.; Guo, N.; Ladunga, I.; Ulitsky-Lazareva, B.; et al. (Jan 2003). "PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification". Nucleic Acids Res. 31 (1): 334–41. doi:10.1093/nar/gkg115. PMC 165562. PMID 12520017.
Mi, H.; Muruganujan, A.; Thomas, PD. (Jan 2013). "PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees". Nucleic Acids Res. 41 (Database issue): D377–86. doi:10.1093/nar/gks1118. PMC 3531194. PMID 23193289.
Hunter, S.; Jones, P.; Mitchell, A.; Apweiler, R.; Attwood, TK.; Bateman, A.; Bernard, T.; Binns, D.; et al. (Jan 2012). "InterPro in 2011: new developments in the family and domain prediction database". Nucleic Acids Res. 40 (Database issue): D306–12. doi:10.1093/nar/gkr948. PMC 3245097. PMID 22096229.
Mi, H.; Muruganujan, A.; Thomas, PD. (Aug 2013). "Large-scale gene function analysis with the PANTHER classification system". Nucleic Acids Res. 8 (8): 1551–66. doi:10.1038/nprot.2013.092. PMC 6519453. PMID 23868073.
Mi, H; Huang, X; Muruganujan, A; Tang, H; Mills, C; Kang, D; Thomas, PD (29 November 2016). "PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements". Nucleic Acids Research. 45 (D1): D183–D189. doi:10.1093/nar/gkw1138. PMC 5210595. PMID 27899595.
The UniProt Consortium (Jan 2012). "Reorganizing the protein space at the Universal Protein Resource (UniProt)". Nucleic Acids Res. 40 (D1): D71–D75. doi:10.1093/nar/gkr981. PMC 3245120. PMID 22102590.
Gaudet, P.; Livstone, M.S.; Lewis, S.E.; Thomas, P.D. (Sep 2011). "Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium". Brief Bioinform. 12 (5): 449–62. doi:10.1093/bib/bbr042. PMC 3178059. PMID 21873635.
Gene Ontology Consortium (Jan 2012). "The Gene Ontology: enhancements for 2011". Nucleic Acids Res. 40 (D1): D559–D564. doi:10.1093/nar/gkr1028. PMC 3245151. PMID 22102568.
Wu, C.H.; Apweiler, R.; Bairoch, A.; Natale, D.A.; Barker, W.C.; Boeckmann, B.; Ferro, S.; Gasteiger, E.; et al. (Jan 2006). "The Universal Protein Resource (UniProt): an expanding universe of protein information". Nucleic Acids Res. 34 (Database issue): D187–D191. doi:10.1093/nar/gkj161. PMC 1347523. PMID 16381842.
Mi, H.; Guo, N.; Thomas, P.D. (Jan 2007). "PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways". Nucleic Acids Res. 35 (Database issue): D247–D252. doi:10.1093/nar/gkl869. PMC 1716723. PMID 17130144.
Flicek, P.; Amode, M.R.; Barrell, D.; Beal, K.; Brent, S.; Chen, Y.; Clapham, P.; Coates, G.; et al. (Jan 2011). "Ensembl". Nucleic Acids Res. 39 (Database issue): D800–D806. doi:10.1093/nar/gkq1064. PMC 3013672. PMID 21045057.
Maglott, D.; Ostell, J.; Pruitt, K.D.; Tatusova, T. (Jan 2011). "Entrez Gene: gene-centered information at NCBI". Nucleic Acids Res. 39 (Database issue): D52–D57. doi:10.1093/nar/gkq1237. PMC 3013746. PMID 21115458.
Mi, H.; Dong, Q.; Muruganujan, A.; Gaudet, P.; Lewis, S.; Thomas, P.D. (Jan 2010). "PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium". Nucleic Acids Res. 38 (Database issue): D204–D210. doi:10.1093/nar/gkp1019. PMC 2808919. PMID 20015972.

pubmed.ncbi.nlm.nih.gov

Thomas, PD.; Kejariwal, A.; Campbell, MJ.; Mi, H.; Diemer, K.; Guo, N.; Ladunga, I.; Ulitsky-Lazareva, B.; et al. (Jan 2003). "PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification". Nucleic Acids Res. 31 (1): 334–41. doi:10.1093/nar/gkg115. PMC 165562. PMID 12520017.
Mi, H.; Muruganujan, A.; Thomas, PD. (Jan 2013). "PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees". Nucleic Acids Res. 41 (Database issue): D377–86. doi:10.1093/nar/gks1118. PMC 3531194. PMID 23193289.
Hunter, S.; Jones, P.; Mitchell, A.; Apweiler, R.; Attwood, TK.; Bateman, A.; Bernard, T.; Binns, D.; et al. (Jan 2012). "InterPro in 2011: new developments in the family and domain prediction database". Nucleic Acids Res. 40 (Database issue): D306–12. doi:10.1093/nar/gkr948. PMC 3245097. PMID 22096229.
Mi, H.; Muruganujan, A.; Thomas, PD. (Aug 2013). "Large-scale gene function analysis with the PANTHER classification system". Nucleic Acids Res. 8 (8): 1551–66. doi:10.1038/nprot.2013.092. PMC 6519453. PMID 23868073.
Mi, H; Huang, X; Muruganujan, A; Tang, H; Mills, C; Kang, D; Thomas, PD (29 November 2016). "PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements". Nucleic Acids Research. 45 (D1): D183–D189. doi:10.1093/nar/gkw1138. PMC 5210595. PMID 27899595.
The UniProt Consortium (Jan 2012). "Reorganizing the protein space at the Universal Protein Resource (UniProt)". Nucleic Acids Res. 40 (D1): D71–D75. doi:10.1093/nar/gkr981. PMC 3245120. PMID 22102590.
Gaudet, P.; Livstone, M.S.; Lewis, S.E.; Thomas, P.D. (Sep 2011). "Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium". Brief Bioinform. 12 (5): 449–62. doi:10.1093/bib/bbr042. PMC 3178059. PMID 21873635.
Gene Ontology Consortium (Jan 2012). "The Gene Ontology: enhancements for 2011". Nucleic Acids Res. 40 (D1): D559–D564. doi:10.1093/nar/gkr1028. PMC 3245151. PMID 22102568.
Wu, C.H.; Apweiler, R.; Bairoch, A.; Natale, D.A.; Barker, W.C.; Boeckmann, B.; Ferro, S.; Gasteiger, E.; et al. (Jan 2006). "The Universal Protein Resource (UniProt): an expanding universe of protein information". Nucleic Acids Res. 34 (Database issue): D187–D191. doi:10.1093/nar/gkj161. PMC 1347523. PMID 16381842.
Mi, H.; Guo, N.; Thomas, P.D. (Jan 2007). "PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways". Nucleic Acids Res. 35 (Database issue): D247–D252. doi:10.1093/nar/gkl869. PMC 1716723. PMID 17130144.
Flicek, P.; Amode, M.R.; Barrell, D.; Beal, K.; Brent, S.; Chen, Y.; Clapham, P.; Coates, G.; et al. (Jan 2011). "Ensembl". Nucleic Acids Res. 39 (Database issue): D800–D806. doi:10.1093/nar/gkq1064. PMC 3013672. PMID 21045057.
Maglott, D.; Ostell, J.; Pruitt, K.D.; Tatusova, T. (Jan 2011). "Entrez Gene: gene-centered information at NCBI". Nucleic Acids Res. 39 (Database issue): D52–D57. doi:10.1093/nar/gkq1237. PMC 3013746. PMID 21115458.
Mi, H.; Dong, Q.; Muruganujan, A.; Gaudet, P.; Lewis, S.; Thomas, P.D. (Jan 2010). "PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium". Nucleic Acids Res. 38 (Database issue): D204–D210. doi:10.1093/nar/gkp1019. PMC 2808919. PMID 20015972.

pantherdb.org

"PANTHERdb".
Details in PANTHER 9 statistics can be found here (http://www.pantherdb.org/panther/summaryStats.jsp)