Pfam (English Wikipedia)
Analysis of information sources in references of the Wikipedia article "Pfam" in English language version.
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doi.org
- Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, Hotz HR, Ceric G, Forslund K, Eddy SR, Sonnhammer EL, Bateman A (2008). "The Pfam protein families database". Nucleic Acids Res. 36 (Database issue): D281–8. doi:10.1093/nar/gkm960. PMC 2238907. PMID 18039703.
- Finn, R. D.; Mistry, J.; Schuster-Böckler, B.; Griffiths-Jones, S.; Hollich, V.; Lassmann, T.; Moxon, S.; Marshall, M.; Khanna, A.; Durbin, R.; Eddy, S. R.; Sonnhammer, E. L.; Bateman, A. (January 2006). "Pfam: clans, web tools and services" (Free full text). Nucleic Acids Research. 34 (Database issue): D247–D251. doi:10.1093/nar/gkj149. ISSN 0305-1048. PMC 1347511. PMID 16381856.
- Bateman, A.; Coin, L.; Durbin, R.; Finn, R. D.; Hollich, V.; Griffiths-Jones, S.; Khanna, A.; Marshall, M.; Moxon, S.; Sonnhammer, E. L.; Studholme, D. J.; Yeats, C.; Eddy, S. R. (2004). "The Pfam protein families database". Nucleic Acids Research. 32 (Database issue): 138D–1141. doi:10.1093/nar/gkh121. ISSN 0305-1048. PMC 308855. PMID 14681378.
- Sammut, Stephen; Finn, Robert D.; Bateman, Alex (2008). "Pfam 10 years on: 10 000 families and still growing". Briefings in Bioinformatics. 9 (3): 210–219. doi:10.1093/bib/bbn010. PMID 18344544.
- Sonnhammer, Erik L.L.; Eddy, Sean R.; Durbin, Richard (1997). "Pfam: A Comprehensive Database of Protein Domain Families Based on Seed Alignments". Proteins. 28 (3): 405–420. doi:10.1002/(sici)1097-0134(199707)28:3<405::aid-prot10>3.0.co;2-l. PMID 9223186. S2CID 9569028.
- Xu, Qifang; Dunbrack, Roland L. (2012). "Assignment of protein sequences to existing domain and family classification systems: Pfam and the PDB". Bioinformatics. 28 (21): 2763–2772. doi:10.1093/bioinformatics/bts533. PMC 3476341. PMID 22942020.
- Finn, R. D.; Mistry, J.; Tate, J.; Coggill, P.; Heger, A.; Pollington, J. E.; Gavin, O. L.; Gunasekaran, P.; Ceric, G.; Forslund, K.; Holm, L.; Sonnhammer, E. L. L.; Eddy, S. R.; Bateman, A. (2009). "The Pfam protein families database". Nucleic Acids Research. 38 (Database): D211–D222. doi:10.1093/nar/gkp985. ISSN 0305-1048. PMC 2808889. PMID 19920124.
- Bateman A, Birney E, Cerruti L, Durbin R, Etwiller L, Eddy SR, Griffiths-Jones S, Howe KL, Marshall M, Sonnhammer EL (2002). "The Pfam protein families database". Nucleic Acids Res. 30 (1): 276–80. doi:10.1093/nar/30.1.276. PMC 99071. PMID 11752314.
- Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, et al. (2000). "The genome sequence of Drosophila melanogaster". Science. 287 (5461): 2185–95. Bibcode:2000Sci...287.2185.. CiteSeerX 10.1.1.549.8639. doi:10.1126/science.287.5461.2185. PMID 10731132.
- Lander, Eric S.; Linton, Lauren M.; Birren, Bruce; Nusbaum, Chad; Zody, Michael C.; et al. (2001). "Initial sequencing and analysis of the human genome". Nature. 409 (6822): 860–921. doi:10.1038/35057062. hdl:2027.42/62798. ISSN 0028-0836. PMID 11237011.
- Finn, Robert D.; Bateman, Alex; Clements, Jody; Coggill, Penelope; Eberhardt, Ruth Y.; Eddy, Sean R.; Heger, Andreas; Hetherington, Kirstie; Holm, Liisa; Mistry, Jaina; Sonnhammer, Erik L. L.; Tate, John; Punta, Marco (2014). "Pfam: the protein families database". Nucleic Acids Research. 42 (D1): D222–D230. doi:10.1093/nar/gkt1223. ISSN 0305-1048. PMC 3965110. PMID 24288371.
- Sonnhammer EL, Eddy SR, Birney E, Bateman A, Durbin R (1998). "Pfam: multiple sequence alignments and HMM-profiles of protein domains". Nucleic Acids Res. 26 (1): 320–2. doi:10.1093/nar/26.1.320. PMC 147209. PMID 9399864.
- Finn, R. D.; Marshall, M.; Bateman, A. (2004). "iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions". Bioinformatics. 21 (3): 410–412. doi:10.1093/bioinformatics/bti011. ISSN 1367-4803. PMID 15353450.
- Finn, Robert D.; Coggill, Penelope; Eberhardt, Ruth Y.; Eddy, Sean R.; Mistry, Jaina; Mitchell, Alex L.; Potter, Simon C.; Punta, Marco; Qureshi, Matloob; Sangrador-Vegas, Amaia; Salazar, Gustavo A.; Tate, John; Bateman, Alex (2016). "The Pfam protein families database: towards a more sustainable future". Nucleic Acids Research. 44 (D1): D279–D285. doi:10.1093/nar/gkv1344. ISSN 0305-1048. PMC 4702930. PMID 26673716.
- Punta, M.; Coggill, P. C.; Eberhardt, R. Y.; Mistry, J.; Tate, J.; Boursnell, C.; Pang, N.; Forslund, K.; Ceric, G.; Clements, J.; Heger, A.; Holm, L.; Sonnhammer, E. L. L.; Eddy, S. R.; Bateman, A.; Finn, R. D. (2011). "The Pfam protein families database". Nucleic Acids Research. 40 (D1): D290–D301. doi:10.1093/nar/gkr1065. ISSN 0305-1048. PMC 3245129. PMID 22127870.
- El-Gebali, Sara; Mistry, Jaina; Bateman, Alex; Eddy, Sean R; Luciani, Aurélien; Potter, Simon C; Qureshi, Matloob; Richardson, Lorna J; Salazar, Gustavo A; Smart, Alfredo; Sonnhammer, Erik L L; Hirsh, Layla; Paladin, Lisanna; Piovesan, Damiano; Tosatto, Silvio C E; Finn, Robert D (8 January 2019). "The Pfam protein families database in 2019". Nucleic Acids Research. 47 (D1): D427–D432. doi:10.1093/nar/gky995. PMC 6324024. PMID 30357350.
- Chothia, Cyrus (1992). "One thousand families for the molecular biologist". Nature. 357 (6379): 543–544. Bibcode:1992Natur.357..543C. doi:10.1038/357543a0. ISSN 0028-0836. PMID 1608464. S2CID 4355476.
- Heger, A.; Wilton, C. A.; Sivakumar, A.; Holm, L. (January 2005). "ADDA: a domain database with global coverage of the protein universe" (Free full text). Nucleic Acids Research. 33 (Database issue): D188–D191. doi:10.1093/nar/gki096. ISSN 0305-1048. PMC 540050. PMID 15608174.
- name="">Paysan-Lafosse, Typhaine (2023). "InterPro in 2022". Nucleic Acids Research. 51 (D1): D418–D427. doi:10.1093/nar/gkac993. PMC 9825450.
- Xu, Qifang; Dunbrack, Roland (2012). "Assignment of protein sequences to existing domain and family classification systems: Pfam and the PDB". Bioinformatics. 28 (21): 2763–72. doi:10.1093/bioinformatics/bts533. PMC 3476341. PMID 22942020.
fccc.edu
dunbrack2.fccc.edu
- Dunbrack, Roland. "PDBfam". Fox Chase Cancer Center. Retrieved 9 March 2013.
handle.net
hdl.handle.net
- Lander, Eric S.; Linton, Lauren M.; Birren, Bruce; Nusbaum, Chad; Zody, Michael C.; et al. (2001). "Initial sequencing and analysis of the human genome". Nature. 409 (6822): 860–921. doi:10.1038/35057062. hdl:2027.42/62798. ISSN 0028-0836. PMID 11237011.
harvard.edu
ui.adsabs.harvard.edu
- Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, et al. (2000). "The genome sequence of Drosophila melanogaster". Science. 287 (5461): 2185–95. Bibcode:2000Sci...287.2185.. CiteSeerX 10.1.1.549.8639. doi:10.1126/science.287.5461.2185. PMID 10731132.
- Chothia, Cyrus (1992). "One thousand families for the molecular biologist". Nature. 357 (6379): 543–544. Bibcode:1992Natur.357..543C. doi:10.1038/357543a0. ISSN 0028-0836. PMID 1608464. S2CID 4355476.
nih.gov
pubmed.ncbi.nlm.nih.gov
- Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, Hotz HR, Ceric G, Forslund K, Eddy SR, Sonnhammer EL, Bateman A (2008). "The Pfam protein families database". Nucleic Acids Res. 36 (Database issue): D281–8. doi:10.1093/nar/gkm960. PMC 2238907. PMID 18039703.
- Finn, R. D.; Mistry, J.; Schuster-Böckler, B.; Griffiths-Jones, S.; Hollich, V.; Lassmann, T.; Moxon, S.; Marshall, M.; Khanna, A.; Durbin, R.; Eddy, S. R.; Sonnhammer, E. L.; Bateman, A. (January 2006). "Pfam: clans, web tools and services" (Free full text). Nucleic Acids Research. 34 (Database issue): D247–D251. doi:10.1093/nar/gkj149. ISSN 0305-1048. PMC 1347511. PMID 16381856.
- Bateman, A.; Coin, L.; Durbin, R.; Finn, R. D.; Hollich, V.; Griffiths-Jones, S.; Khanna, A.; Marshall, M.; Moxon, S.; Sonnhammer, E. L.; Studholme, D. J.; Yeats, C.; Eddy, S. R. (2004). "The Pfam protein families database". Nucleic Acids Research. 32 (Database issue): 138D–1141. doi:10.1093/nar/gkh121. ISSN 0305-1048. PMC 308855. PMID 14681378.
- Sammut, Stephen; Finn, Robert D.; Bateman, Alex (2008). "Pfam 10 years on: 10 000 families and still growing". Briefings in Bioinformatics. 9 (3): 210–219. doi:10.1093/bib/bbn010. PMID 18344544.
- Sonnhammer, Erik L.L.; Eddy, Sean R.; Durbin, Richard (1997). "Pfam: A Comprehensive Database of Protein Domain Families Based on Seed Alignments". Proteins. 28 (3): 405–420. doi:10.1002/(sici)1097-0134(199707)28:3<405::aid-prot10>3.0.co;2-l. PMID 9223186. S2CID 9569028.
- Xu, Qifang; Dunbrack, Roland L. (2012). "Assignment of protein sequences to existing domain and family classification systems: Pfam and the PDB". Bioinformatics. 28 (21): 2763–2772. doi:10.1093/bioinformatics/bts533. PMC 3476341. PMID 22942020.
- Finn, R. D.; Mistry, J.; Tate, J.; Coggill, P.; Heger, A.; Pollington, J. E.; Gavin, O. L.; Gunasekaran, P.; Ceric, G.; Forslund, K.; Holm, L.; Sonnhammer, E. L. L.; Eddy, S. R.; Bateman, A. (2009). "The Pfam protein families database". Nucleic Acids Research. 38 (Database): D211–D222. doi:10.1093/nar/gkp985. ISSN 0305-1048. PMC 2808889. PMID 19920124.
- Bateman A, Birney E, Cerruti L, Durbin R, Etwiller L, Eddy SR, Griffiths-Jones S, Howe KL, Marshall M, Sonnhammer EL (2002). "The Pfam protein families database". Nucleic Acids Res. 30 (1): 276–80. doi:10.1093/nar/30.1.276. PMC 99071. PMID 11752314.
- Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, et al. (2000). "The genome sequence of Drosophila melanogaster". Science. 287 (5461): 2185–95. Bibcode:2000Sci...287.2185.. CiteSeerX 10.1.1.549.8639. doi:10.1126/science.287.5461.2185. PMID 10731132.
- Lander, Eric S.; Linton, Lauren M.; Birren, Bruce; Nusbaum, Chad; Zody, Michael C.; et al. (2001). "Initial sequencing and analysis of the human genome". Nature. 409 (6822): 860–921. doi:10.1038/35057062. hdl:2027.42/62798. ISSN 0028-0836. PMID 11237011.
- Finn, Robert D.; Bateman, Alex; Clements, Jody; Coggill, Penelope; Eberhardt, Ruth Y.; Eddy, Sean R.; Heger, Andreas; Hetherington, Kirstie; Holm, Liisa; Mistry, Jaina; Sonnhammer, Erik L. L.; Tate, John; Punta, Marco (2014). "Pfam: the protein families database". Nucleic Acids Research. 42 (D1): D222–D230. doi:10.1093/nar/gkt1223. ISSN 0305-1048. PMC 3965110. PMID 24288371.
- Sonnhammer EL, Eddy SR, Birney E, Bateman A, Durbin R (1998). "Pfam: multiple sequence alignments and HMM-profiles of protein domains". Nucleic Acids Res. 26 (1): 320–2. doi:10.1093/nar/26.1.320. PMC 147209. PMID 9399864.
- Finn, R. D.; Marshall, M.; Bateman, A. (2004). "iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions". Bioinformatics. 21 (3): 410–412. doi:10.1093/bioinformatics/bti011. ISSN 1367-4803. PMID 15353450.
- Finn, Robert D.; Coggill, Penelope; Eberhardt, Ruth Y.; Eddy, Sean R.; Mistry, Jaina; Mitchell, Alex L.; Potter, Simon C.; Punta, Marco; Qureshi, Matloob; Sangrador-Vegas, Amaia; Salazar, Gustavo A.; Tate, John; Bateman, Alex (2016). "The Pfam protein families database: towards a more sustainable future". Nucleic Acids Research. 44 (D1): D279–D285. doi:10.1093/nar/gkv1344. ISSN 0305-1048. PMC 4702930. PMID 26673716.
- Punta, M.; Coggill, P. C.; Eberhardt, R. Y.; Mistry, J.; Tate, J.; Boursnell, C.; Pang, N.; Forslund, K.; Ceric, G.; Clements, J.; Heger, A.; Holm, L.; Sonnhammer, E. L. L.; Eddy, S. R.; Bateman, A.; Finn, R. D. (2011). "The Pfam protein families database". Nucleic Acids Research. 40 (D1): D290–D301. doi:10.1093/nar/gkr1065. ISSN 0305-1048. PMC 3245129. PMID 22127870.
- El-Gebali, Sara; Mistry, Jaina; Bateman, Alex; Eddy, Sean R; Luciani, Aurélien; Potter, Simon C; Qureshi, Matloob; Richardson, Lorna J; Salazar, Gustavo A; Smart, Alfredo; Sonnhammer, Erik L L; Hirsh, Layla; Paladin, Lisanna; Piovesan, Damiano; Tosatto, Silvio C E; Finn, Robert D (8 January 2019). "The Pfam protein families database in 2019". Nucleic Acids Research. 47 (D1): D427–D432. doi:10.1093/nar/gky995. PMC 6324024. PMID 30357350.
- Chothia, Cyrus (1992). "One thousand families for the molecular biologist". Nature. 357 (6379): 543–544. Bibcode:1992Natur.357..543C. doi:10.1038/357543a0. ISSN 0028-0836. PMID 1608464. S2CID 4355476.
- Heger, A.; Wilton, C. A.; Sivakumar, A.; Holm, L. (January 2005). "ADDA: a domain database with global coverage of the protein universe" (Free full text). Nucleic Acids Research. 33 (Database issue): D188–D191. doi:10.1093/nar/gki096. ISSN 0305-1048. PMC 540050. PMID 15608174.
- Xu, Qifang; Dunbrack, Roland (2012). "Assignment of protein sequences to existing domain and family classification systems: Pfam and the PDB". Bioinformatics. 28 (21): 2763–72. doi:10.1093/bioinformatics/bts533. PMC 3476341. PMID 22942020.
ncbi.nlm.nih.gov
- Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, Hotz HR, Ceric G, Forslund K, Eddy SR, Sonnhammer EL, Bateman A (2008). "The Pfam protein families database". Nucleic Acids Res. 36 (Database issue): D281–8. doi:10.1093/nar/gkm960. PMC 2238907. PMID 18039703.
- Finn, R. D.; Mistry, J.; Schuster-Böckler, B.; Griffiths-Jones, S.; Hollich, V.; Lassmann, T.; Moxon, S.; Marshall, M.; Khanna, A.; Durbin, R.; Eddy, S. R.; Sonnhammer, E. L.; Bateman, A. (January 2006). "Pfam: clans, web tools and services" (Free full text). Nucleic Acids Research. 34 (Database issue): D247–D251. doi:10.1093/nar/gkj149. ISSN 0305-1048. PMC 1347511. PMID 16381856.
- Bateman, A.; Coin, L.; Durbin, R.; Finn, R. D.; Hollich, V.; Griffiths-Jones, S.; Khanna, A.; Marshall, M.; Moxon, S.; Sonnhammer, E. L.; Studholme, D. J.; Yeats, C.; Eddy, S. R. (2004). "The Pfam protein families database". Nucleic Acids Research. 32 (Database issue): 138D–1141. doi:10.1093/nar/gkh121. ISSN 0305-1048. PMC 308855. PMID 14681378.
- Xu, Qifang; Dunbrack, Roland L. (2012). "Assignment of protein sequences to existing domain and family classification systems: Pfam and the PDB". Bioinformatics. 28 (21): 2763–2772. doi:10.1093/bioinformatics/bts533. PMC 3476341. PMID 22942020.
- Finn, R. D.; Mistry, J.; Tate, J.; Coggill, P.; Heger, A.; Pollington, J. E.; Gavin, O. L.; Gunasekaran, P.; Ceric, G.; Forslund, K.; Holm, L.; Sonnhammer, E. L. L.; Eddy, S. R.; Bateman, A. (2009). "The Pfam protein families database". Nucleic Acids Research. 38 (Database): D211–D222. doi:10.1093/nar/gkp985. ISSN 0305-1048. PMC 2808889. PMID 19920124.
- Bateman A, Birney E, Cerruti L, Durbin R, Etwiller L, Eddy SR, Griffiths-Jones S, Howe KL, Marshall M, Sonnhammer EL (2002). "The Pfam protein families database". Nucleic Acids Res. 30 (1): 276–80. doi:10.1093/nar/30.1.276. PMC 99071. PMID 11752314.
- Finn, Robert D.; Bateman, Alex; Clements, Jody; Coggill, Penelope; Eberhardt, Ruth Y.; Eddy, Sean R.; Heger, Andreas; Hetherington, Kirstie; Holm, Liisa; Mistry, Jaina; Sonnhammer, Erik L. L.; Tate, John; Punta, Marco (2014). "Pfam: the protein families database". Nucleic Acids Research. 42 (D1): D222–D230. doi:10.1093/nar/gkt1223. ISSN 0305-1048. PMC 3965110. PMID 24288371.
- Sonnhammer EL, Eddy SR, Birney E, Bateman A, Durbin R (1998). "Pfam: multiple sequence alignments and HMM-profiles of protein domains". Nucleic Acids Res. 26 (1): 320–2. doi:10.1093/nar/26.1.320. PMC 147209. PMID 9399864.
- Finn, Robert D.; Coggill, Penelope; Eberhardt, Ruth Y.; Eddy, Sean R.; Mistry, Jaina; Mitchell, Alex L.; Potter, Simon C.; Punta, Marco; Qureshi, Matloob; Sangrador-Vegas, Amaia; Salazar, Gustavo A.; Tate, John; Bateman, Alex (2016). "The Pfam protein families database: towards a more sustainable future". Nucleic Acids Research. 44 (D1): D279–D285. doi:10.1093/nar/gkv1344. ISSN 0305-1048. PMC 4702930. PMID 26673716.
- Punta, M.; Coggill, P. C.; Eberhardt, R. Y.; Mistry, J.; Tate, J.; Boursnell, C.; Pang, N.; Forslund, K.; Ceric, G.; Clements, J.; Heger, A.; Holm, L.; Sonnhammer, E. L. L.; Eddy, S. R.; Bateman, A.; Finn, R. D. (2011). "The Pfam protein families database". Nucleic Acids Research. 40 (D1): D290–D301. doi:10.1093/nar/gkr1065. ISSN 0305-1048. PMC 3245129. PMID 22127870.
- El-Gebali, Sara; Mistry, Jaina; Bateman, Alex; Eddy, Sean R; Luciani, Aurélien; Potter, Simon C; Qureshi, Matloob; Richardson, Lorna J; Salazar, Gustavo A; Smart, Alfredo; Sonnhammer, Erik L L; Hirsh, Layla; Paladin, Lisanna; Piovesan, Damiano; Tosatto, Silvio C E; Finn, Robert D (8 January 2019). "The Pfam protein families database in 2019". Nucleic Acids Research. 47 (D1): D427–D432. doi:10.1093/nar/gky995. PMC 6324024. PMID 30357350.
- Heger, A.; Wilton, C. A.; Sivakumar, A.; Holm, L. (January 2005). "ADDA: a domain database with global coverage of the protein universe" (Free full text). Nucleic Acids Research. 33 (Database issue): D188–D191. doi:10.1093/nar/gki096. ISSN 0305-1048. PMC 540050. PMID 15608174.
- name="">Paysan-Lafosse, Typhaine (2023). "InterPro in 2022". Nucleic Acids Research. 51 (D1): D418–D427. doi:10.1093/nar/gkac993. PMC 9825450.
- Xu, Qifang; Dunbrack, Roland (2012). "Assignment of protein sequences to existing domain and family classification systems: Pfam and the PDB". Bioinformatics. 28 (21): 2763–72. doi:10.1093/bioinformatics/bts533. PMC 3476341. PMID 22942020.
psu.edu
citeseerx.ist.psu.edu
- Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, et al. (2000). "The genome sequence of Drosophila melanogaster". Science. 287 (5461): 2185–95. Bibcode:2000Sci...287.2185.. CiteSeerX 10.1.1.549.8639. doi:10.1126/science.287.5461.2185. PMID 10731132.
semanticscholar.org
api.semanticscholar.org
- Sonnhammer, Erik L.L.; Eddy, Sean R.; Durbin, Richard (1997). "Pfam: A Comprehensive Database of Protein Domain Families Based on Seed Alignments". Proteins. 28 (3): 405–420. doi:10.1002/(sici)1097-0134(199707)28:3<405::aid-prot10>3.0.co;2-l. PMID 9223186. S2CID 9569028.
- Chothia, Cyrus (1992). "One thousand families for the molecular biologist". Nature. 357 (6379): 543–544. Bibcode:1992Natur.357..543C. doi:10.1038/357543a0. ISSN 0028-0836. PMID 1608464. S2CID 4355476.
swmed.edu
prodata.swmed.edu
- "Evolutionary Classification of Protein Domains". prodata.swmed.edu. Retrieved 18 May 2019.
worldcat.org
search.worldcat.org
- Finn, R. D.; Mistry, J.; Schuster-Böckler, B.; Griffiths-Jones, S.; Hollich, V.; Lassmann, T.; Moxon, S.; Marshall, M.; Khanna, A.; Durbin, R.; Eddy, S. R.; Sonnhammer, E. L.; Bateman, A. (January 2006). "Pfam: clans, web tools and services" (Free full text). Nucleic Acids Research. 34 (Database issue): D247–D251. doi:10.1093/nar/gkj149. ISSN 0305-1048. PMC 1347511. PMID 16381856.
- Bateman, A.; Coin, L.; Durbin, R.; Finn, R. D.; Hollich, V.; Griffiths-Jones, S.; Khanna, A.; Marshall, M.; Moxon, S.; Sonnhammer, E. L.; Studholme, D. J.; Yeats, C.; Eddy, S. R. (2004). "The Pfam protein families database". Nucleic Acids Research. 32 (Database issue): 138D–1141. doi:10.1093/nar/gkh121. ISSN 0305-1048. PMC 308855. PMID 14681378.
- Finn, R. D.; Mistry, J.; Tate, J.; Coggill, P.; Heger, A.; Pollington, J. E.; Gavin, O. L.; Gunasekaran, P.; Ceric, G.; Forslund, K.; Holm, L.; Sonnhammer, E. L. L.; Eddy, S. R.; Bateman, A. (2009). "The Pfam protein families database". Nucleic Acids Research. 38 (Database): D211–D222. doi:10.1093/nar/gkp985. ISSN 0305-1048. PMC 2808889. PMID 19920124.
- Lander, Eric S.; Linton, Lauren M.; Birren, Bruce; Nusbaum, Chad; Zody, Michael C.; et al. (2001). "Initial sequencing and analysis of the human genome". Nature. 409 (6822): 860–921. doi:10.1038/35057062. hdl:2027.42/62798. ISSN 0028-0836. PMID 11237011.
- Finn, Robert D.; Bateman, Alex; Clements, Jody; Coggill, Penelope; Eberhardt, Ruth Y.; Eddy, Sean R.; Heger, Andreas; Hetherington, Kirstie; Holm, Liisa; Mistry, Jaina; Sonnhammer, Erik L. L.; Tate, John; Punta, Marco (2014). "Pfam: the protein families database". Nucleic Acids Research. 42 (D1): D222–D230. doi:10.1093/nar/gkt1223. ISSN 0305-1048. PMC 3965110. PMID 24288371.
- Finn, R. D.; Marshall, M.; Bateman, A. (2004). "iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions". Bioinformatics. 21 (3): 410–412. doi:10.1093/bioinformatics/bti011. ISSN 1367-4803. PMID 15353450.
- Finn, Robert D.; Coggill, Penelope; Eberhardt, Ruth Y.; Eddy, Sean R.; Mistry, Jaina; Mitchell, Alex L.; Potter, Simon C.; Punta, Marco; Qureshi, Matloob; Sangrador-Vegas, Amaia; Salazar, Gustavo A.; Tate, John; Bateman, Alex (2016). "The Pfam protein families database: towards a more sustainable future". Nucleic Acids Research. 44 (D1): D279–D285. doi:10.1093/nar/gkv1344. ISSN 0305-1048. PMC 4702930. PMID 26673716.
- Punta, M.; Coggill, P. C.; Eberhardt, R. Y.; Mistry, J.; Tate, J.; Boursnell, C.; Pang, N.; Forslund, K.; Ceric, G.; Clements, J.; Heger, A.; Holm, L.; Sonnhammer, E. L. L.; Eddy, S. R.; Bateman, A.; Finn, R. D. (2011). "The Pfam protein families database". Nucleic Acids Research. 40 (D1): D290–D301. doi:10.1093/nar/gkr1065. ISSN 0305-1048. PMC 3245129. PMID 22127870.
- Chothia, Cyrus (1992). "One thousand families for the molecular biologist". Nature. 357 (6379): 543–544. Bibcode:1992Natur.357..543C. doi:10.1038/357543a0. ISSN 0028-0836. PMID 1608464. S2CID 4355476.
- Heger, A.; Wilton, C. A.; Sivakumar, A.; Holm, L. (January 2005). "ADDA: a domain database with global coverage of the protein universe" (Free full text). Nucleic Acids Research. 33 (Database issue): D188–D191. doi:10.1093/nar/gki096. ISSN 0305-1048. PMC 540050. PMID 15608174.
xfam.wordpress.com
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- "A new Pfam-B is released". Xfam Blog. 30 June 2020.
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