References analysis of the Wikipedia article "Phylogenetic Assignment of Named Global Outbreak Lineages" in the English version

cov-lineages.org

"PANGO lineages". cov-lineages.org. Archived from the original on 28 February 2021. Retrieved 4 March 2021.

"pangoLEARN PANGOLIN 2.0: pangoLEARN description". cov-lineages.org. Archived from the original on 4 November 2021. Retrieved 19 November 2021. The model was trained using ~60,000 SARS-CoV-2 sequences from GISAID... training this model takes approximately 30 minutes on our hardware

doi.org

O'Toole, Áine; Scher, Emily; Underwood, Anthony; Jackson, Ben; Hill, Verity; McCrone, John T; Colquhoun, Rachel; Ruis, Chris; Abu-Dahab, Khalil; Taylor, Ben; Yeats, Corin; Du Plessis, Louis; Maloney, Daniel; Medd, Nathan; Attwood, Stephen W; Aanensen, David M; Holmes, Edward C; Pybus, Oliver G; Rambaut, Andrew (5 July 2021). "Assignment of Epidemiological Lineages in an Emerging Pandemic Using the Pangolin Tool". Virus Evolution. 7 (2): veab064. doi:10.1093/ve/veab064. PMC 8344591. PMID 34527285.

Rambaut, A.; Holmes, E.C.; O'Toole, Á.; et al. (2020). "A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology". Nature Microbiology. 5 (11): 1403–1407. doi:10.1038/s41564-020-0770-5. PMC 7610519. PMID 32669681. S2CID 220544096.

Rambaut, Andrew; Holmes, Edward C.; o'Toole, Áine; Hill, Verity; McCrone, John T.; Ruis, Christopher; Du Plessis, Louis; Pybus, Oliver G. (15 July 2020). "Addendum: A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology". Nature Microbiology. 6 (3): 415. doi:10.1038/s41564-021-00872-5. PMC 7845574. PMID 33514928.

Pipes, Lenore; Wang, Hongru; Huelsenbeck, John P; Nielsen, Rasmus (9 December 2020). Malik, Harmit (ed.). "Assessing Uncertainty in the Rooting of the SARS-CoV-2 Phylogeny". Molecular Biology and Evolution. 38 (4). Oxford University Press (OUP): 1537–1543. doi:10.1093/molbev/msaa316. ISSN 0737-4038. PMC 7798932. PMID 33295605. Archived from the original on 10 December 2020. Retrieved 22 January 2021.

Jacob, Jobin John; Vasudevan, Karthick; Pragasam, Agila Kumari; Gunasekaran, Karthik; Kang, Gagandeep; Veeraraghavan, Balaji; Mutreja, Ankur (22 December 2020). "Evolutionary tracking of SARS-CoV-2 genetic variants highlights intricate balance of stabilizing and destabilizing mutations". bioRxiv 10.1101/2020.12.22.423920. Phylogenetic Assignment of Named Global Outbreak LINeages tool (PANGOLIN) has been the most widely used tool for lineage assignment to newly emerging variants.

github.com

"Release 4.3.1". 26 July 2023. Retrieved 1 August 2023.

"pangoLEARN Store of the trained model for PANGOLIN to access". GitHub: cov-lineages/pangoLEARN. Archived from the original on 3 January 2021. Retrieved 13 February 2021.

"cov-lineages/pangolin". GitHub: cov-lineages/pangolin. Archived from the original on 15 February 2021. Retrieved 13 February 2021.

nih.gov

ncbi.nlm.nih.gov

pubmed.ncbi.nlm.nih.gov

oup.com

academic.oup.com

web.archive.org

"Real-Time Epidemiology for COVID-19". www.pathogensurveillance.net. Archived from the original on 17 January 2021. Retrieved 22 January 2021.

"Pangolin web application release". virological.org. May 2020. Archived from the original on 10 February 2021. Retrieved 18 February 2021.

"pangoLEARN Store of the trained model for PANGOLIN to access". GitHub: cov-lineages/pangoLEARN. Archived from the original on 3 January 2021. Retrieved 13 February 2021.

"PANGO lineages". cov-lineages.org. Archived from the original on 28 February 2021. Retrieved 4 March 2021.

"sklearn.tree.DecisionTreeClassifier". scikit-learn.org. Archived from the original on 19 February 2021. Retrieved 13 February 2021.

"cov-lineages/pangolin". GitHub: cov-lineages/pangolin. Archived from the original on 15 February 2021. Retrieved 13 February 2021.

"Pangolin COVID-19 Lineage Assigner". pangolin.cog-uk.io. Archived from the original on 10 February 2021. Retrieved 13 February 2021.

worldcat.org

search.worldcat.org

Phylogenetic Assignment of Named Global Outbreak Lineages (English Wikipedia)

cog-uk.io

pangolin.cog-uk.io

cov-lineages.org

doi.org

github.com

nih.gov

ncbi.nlm.nih.gov

pubmed.ncbi.nlm.nih.gov

oup.com

academic.oup.com

pathogensurveillance.net

scikit-learn.org

semanticscholar.org

api.semanticscholar.org

virological.org

web.archive.org

worldcat.org

search.worldcat.org