Phylogenetic network (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Phylogenetic network" in English language version.

refsWebsite

Global rank English rank

14nih.gov

4^th place

11doi.org

2^nd place

2arxiv.org

69^th place

59^th place

1web.archive.org

1^st place

1phylogenetic-networks.org

low place

1r-project.org

7,871^st place

5,225^th place

1handle.net

102^nd place

76^th place

1semanticscholar.org

11^th place

8^th place

1worldcat.org

5^th place

1univ-mlv.fr

low place

arxiv.org

Cardona G, Rosselló F, Valiente G (October 2009). "Comparison of tree-child phylogenetic networks". IEEE/ACM Transactions on Computational Biology and Bioinformatics. 6 (4): 552–69. arXiv:0708.3499. doi:10.1109/TCBB.2007.70270. hdl:2117/7146. PMID 19875855. S2CID 405065.
Samson, Stéphane; Lord, Étienne; Makarenkov, Vladimir (26 May 2022). "SimPlot++: a Python application for representing sequence similarity and detecting recombination". Bioinformatics. 38 (11): 3118–3120. arXiv:2112.09755. doi:10.1093/bioinformatics/btac287. PMID 35451456.

doi.org

Huson DH, Scornavacca C (2011). "A survey of combinatorial methods for phylogenetic networks". Genome Biology and Evolution. 3: 23–35. doi:10.1093/gbe/evq077. PMC 3017387. PMID 21081312.
Arenas M, Valiente G, Posada D (December 2008). "Characterization of reticulate networks based on the coalescent with recombination". Molecular Biology and Evolution. 25 (12): 2517–20. doi:10.1093/molbev/msn219. PMC 2582979. PMID 18927089.
Huson DH, Bryant D (February 2006). "Application of phylogenetic networks in evolutionary studies". Molecular Biology and Evolution. 23 (2): 254–67. doi:10.1093/molbev/msj030. PMID 16221896.
Schliep K, Potts AJ, Morrison DA, Grimm GW (2017). "Intertwining phylogenetic trees and networks". Methods in Ecology and Evolution. 8 (10): 1212–1220. doi:10.1111/2041-210X.12760.
Cardona G, Rosselló F, Valiente G (December 2008). "Extended Newick: it is time for a standard representation of phylogenetic networks". BMC Bioinformatics. 9: 532. doi:10.1186/1471-2105-9-532. PMC 2621367. PMID 19077301.
Legendre P, Makarenkov V (April 2002). "Reconstruction of biogeographic and evolutionary networks using reticulograms". Systematic Biology. 51 (2): 199–216. doi:10.1080/10635150252899725. PMID 12028728.
Cardona G, Rosselló F, Valiente G (October 2009). "Comparison of tree-child phylogenetic networks". IEEE/ACM Transactions on Computational Biology and Bioinformatics. 6 (4): 552–69. arXiv:0708.3499. doi:10.1109/TCBB.2007.70270. hdl:2117/7146. PMID 19875855. S2CID 405065.
Francis AR, Steel M (September 2015). "Which Phylogenetic Networks are Merely Trees with Additional Arcs?". Systematic Biology. 64 (5): 768–77. doi:10.1093/sysbio/syv037. PMC 4538883. PMID 26070685.
Choy C, Jansson J, Sadakane K, Sung WK (2005-05-20). "Computing the maximum agreement of phylogenetic networks". Theoretical Computer Science. Pattern Discovery in the Post Genome. 335 (1): 93–107. doi:10.1016/j.tcs.2004.12.012. ISSN 0304-3975.
Arenas M, Patricio M, Posada D, Valiente G (May 2010). "Characterization of phylogenetic networks with NetTest". BMC Bioinformatics. 11: 268. doi:10.1186/1471-2105-11-268. PMC 2880032. PMID 20487540.
Samson, Stéphane; Lord, Étienne; Makarenkov, Vladimir (26 May 2022). "SimPlot++: a Python application for representing sequence similarity and detecting recombination". Bioinformatics. 38 (11): 3118–3120. arXiv:2112.09755. doi:10.1093/bioinformatics/btac287. PMID 35451456.

handle.net

hdl.handle.net

Cardona G, Rosselló F, Valiente G (October 2009). "Comparison of tree-child phylogenetic networks". IEEE/ACM Transactions on Computational Biology and Bioinformatics. 6 (4): 552–69. arXiv:0708.3499. doi:10.1109/TCBB.2007.70270. hdl:2117/7146. PMID 19875855. S2CID 405065.

nih.gov

pubmed.ncbi.nlm.nih.gov

Huson DH, Scornavacca C (2011). "A survey of combinatorial methods for phylogenetic networks". Genome Biology and Evolution. 3: 23–35. doi:10.1093/gbe/evq077. PMC 3017387. PMID 21081312.
Arenas M, Valiente G, Posada D (December 2008). "Characterization of reticulate networks based on the coalescent with recombination". Molecular Biology and Evolution. 25 (12): 2517–20. doi:10.1093/molbev/msn219. PMC 2582979. PMID 18927089.
Huson DH, Bryant D (February 2006). "Application of phylogenetic networks in evolutionary studies". Molecular Biology and Evolution. 23 (2): 254–67. doi:10.1093/molbev/msj030. PMID 16221896.
Cardona G, Rosselló F, Valiente G (December 2008). "Extended Newick: it is time for a standard representation of phylogenetic networks". BMC Bioinformatics. 9: 532. doi:10.1186/1471-2105-9-532. PMC 2621367. PMID 19077301.
Legendre P, Makarenkov V (April 2002). "Reconstruction of biogeographic and evolutionary networks using reticulograms". Systematic Biology. 51 (2): 199–216. doi:10.1080/10635150252899725. PMID 12028728.
Cardona G, Rosselló F, Valiente G (October 2009). "Comparison of tree-child phylogenetic networks". IEEE/ACM Transactions on Computational Biology and Bioinformatics. 6 (4): 552–69. arXiv:0708.3499. doi:10.1109/TCBB.2007.70270. hdl:2117/7146. PMID 19875855. S2CID 405065.
Francis AR, Steel M (September 2015). "Which Phylogenetic Networks are Merely Trees with Additional Arcs?". Systematic Biology. 64 (5): 768–77. doi:10.1093/sysbio/syv037. PMC 4538883. PMID 26070685.
Arenas M, Patricio M, Posada D, Valiente G (May 2010). "Characterization of phylogenetic networks with NetTest". BMC Bioinformatics. 11: 268. doi:10.1186/1471-2105-11-268. PMC 2880032. PMID 20487540.
Samson, Stéphane; Lord, Étienne; Makarenkov, Vladimir (26 May 2022). "SimPlot++: a Python application for representing sequence similarity and detecting recombination". Bioinformatics. 38 (11): 3118–3120. arXiv:2112.09755. doi:10.1093/bioinformatics/btac287. PMID 35451456.

ncbi.nlm.nih.gov

Huson DH, Scornavacca C (2011). "A survey of combinatorial methods for phylogenetic networks". Genome Biology and Evolution. 3: 23–35. doi:10.1093/gbe/evq077. PMC 3017387. PMID 21081312.
Arenas M, Valiente G, Posada D (December 2008). "Characterization of reticulate networks based on the coalescent with recombination". Molecular Biology and Evolution. 25 (12): 2517–20. doi:10.1093/molbev/msn219. PMC 2582979. PMID 18927089.
Cardona G, Rosselló F, Valiente G (December 2008). "Extended Newick: it is time for a standard representation of phylogenetic networks". BMC Bioinformatics. 9: 532. doi:10.1186/1471-2105-9-532. PMC 2621367. PMID 19077301.
Francis AR, Steel M (September 2015). "Which Phylogenetic Networks are Merely Trees with Additional Arcs?". Systematic Biology. 64 (5): 768–77. doi:10.1093/sysbio/syv037. PMC 4538883. PMID 26070685.
Arenas M, Patricio M, Posada D, Valiente G (May 2010). "Characterization of phylogenetic networks with NetTest". BMC Bioinformatics. 11: 268. doi:10.1186/1471-2105-11-268. PMC 2880032. PMID 20487540.

phylogenetic-networks.org

Huson DH, Rupp R, Scornavacca C (2010). Phylogenetic Networks. Cambridge University Press. Archived from the original on 2014-07-14. Retrieved 2010-03-23.{{cite book}}: CS1 maint: location missing publisher (link)

r-project.org

cran.r-project.org

Schliep KP (2018). "R package: Estimating phylogenetic trees with phangorn" (PDF).

semanticscholar.org

api.semanticscholar.org

Cardona G, Rosselló F, Valiente G (October 2009). "Comparison of tree-child phylogenetic networks". IEEE/ACM Transactions on Computational Biology and Bioinformatics. 6 (4): 552–69. arXiv:0708.3499. doi:10.1109/TCBB.2007.70270. hdl:2117/7146. PMID 19875855. S2CID 405065.

univ-mlv.fr

phylnet.univ-mlv.fr

"ISIPhyNC - Information System on Inclusions of Phylogenetic Network Classes". phylnet.univ-mlv.fr. Retrieved 2019-06-13.

web.archive.org

Huson DH, Rupp R, Scornavacca C (2010). Phylogenetic Networks. Cambridge University Press. Archived from the original on 2014-07-14. Retrieved 2010-03-23.{{cite book}}: CS1 maint: location missing publisher (link)

worldcat.org

search.worldcat.org

Choy C, Jansson J, Sadakane K, Sung WK (2005-05-20). "Computing the maximum agreement of phylogenetic networks". Theoretical Computer Science. Pattern Discovery in the Post Genome. 335 (1): 93–107. doi:10.1016/j.tcs.2004.12.012. ISSN 0304-3975.