Plant genome assembly (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Plant genome assembly" in English language version.

refsWebsite

Global rank English rank

53nih.gov

4^th place

44doi.org

2^nd place

18harvard.edu

18^th place

17^th place

13semanticscholar.org

11^th place

8^th place

2handle.net

102^nd place

76^th place

1jstor.org

26^th place

20^th place

1psu.edu

207^th place

136^th place

1escholarship.org

1,523^rd place

976^th place

1web.archive.org

1^st place

1arxiv.org

69^th place

59^th place

1bionanogenomics.com

low place

arxiv.org

Li H (2013). "Aligning sequence reads, clone sequences and assembly contigs with BWA- MEM". arXiv:1303.3997 [q-bio.GN].

bionanogenomics.com

"Bionano: Transforming the Way the World Sees the Genome". bionanogenomics.

doi.org

Moreau H, Verhelst B, Couloux A, Derelle E, Rombauts S, Grimsley N, et al. (August 2012). "Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage". Genome Biology. 13 (8): R74. doi:10.1186/gb-2012-13-8-r74. PMC 3491373. PMID 22925495.
Gregory TR (January 2005). "The C-value enigma in plants and animals: a review of parallels and an appeal for partnership". Annals of Botany. 95 (1): 133–146. doi:10.1093/aob/mci009. PMC 4246714. PMID 15596463.
Zimin A, Stevens KA, Crepeau MW, Holtz-Morris A, Koriabine M, Marçais G, et al. (March 2014). "Sequencing and assembly of the 22-gb loblolly pine genome". Genetics. 196 (3): 875–890. doi:10.1534/genetics.113.159715. PMC 3948813. PMID 24653210.
Deschamps S, Campbell MA (2010-04-01). "Utilization of next-generation sequencing platforms in plant genomics and genetic variant discovery". Molecular Breeding. 25 (4): 553–570. doi:10.1007/s11032-009-9357-9. S2CID 29239452.
Shendure J, Ji H (October 2008). "Next-generation DNA sequencing". Nature Biotechnology. 26 (10): 1135–1145. doi:10.1038/nbt1486. PMID 18846087. S2CID 6384349.
Treangen TJ, Salzberg SL (November 2011). "Repetitive DNA and next-generation sequencing: computational challenges and solutions". Nature Reviews. Genetics. 13 (1): 36–46. doi:10.1038/nrg3117. PMC 3324860. PMID 22124482.
Harrison GE, Heslop-Harrison JS (February 1995). "Centromeric repetitive DNA sequences in the genus Brassica". Theoretical and Applied Genetics. 90 (2): 157–165. doi:10.1007/BF00222197. PMID 24173886. S2CID 20591213.
Lanciano S, Carpentier MC, Llauro C, Jobet E, Robakowska-Hyzorek D, Lasserre E, et al. (February 2017). "Sequencing the extrachromosomal circular mobilome reveals retrotransposon activity in plants". PLOS Genetics. 13 (2): e1006630. doi:10.1371/journal.pgen.1006630. PMC 5338827. PMID 28212378.
Michael TP, VanBuren R (April 2015). "Progress, challenges and the future of crop genomes". Current Opinion in Plant Biology. 24: 71–81. Bibcode:2015COPB...24...71M. doi:10.1016/j.pbi.2015.02.002. PMID 25703261.
Flavell RB, Gale MD, O'dell M, Murphy G, Moore G, Lucas H (1993). "Molecular organization of genes and repeats in the large cereal genomes and implications for the isolation of genes by chromosome walking". Chromosomes Today. Dordrecht: Springer. pp. 199–213. doi:10.1007/978-94-011-1510-0_16. ISBN 9789401046602.
Meyers LA, Levin DA (June 2006). "On the abundance of polyploids in flowering plants". Evolution; International Journal of Organic Evolution. 60 (6): 1198–1206. doi:10.1554/05-629.1. PMID 16892970. S2CID 198156503.
The Arabidopsis Genome Initiative (December 2000). "Analysis of the genome sequence of the flowering plant Arabidopsis thaliana". Nature. 408 (6814): 796–815. Bibcode:2000Natur.408..796T. doi:10.1038/35048692. PMID 11130711.
The C. elegans Sequencing Consortium (December 1998). "Genome sequence of the nematode C. elegans: a platform for investigating biology". Science. 282 (5396): 2012–2018. Bibcode:1998Sci...282.2012.. doi:10.1126/science.282.5396.2012. JSTOR 2897605. PMID 9851916.
Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, et al. (March 2000). "The genome sequence of Drosophila melanogaster". Science. 287 (5461): 2185–2195. Bibcode:2000Sci...287.2185.. CiteSeerX 10.1.1.549.8639. doi:10.1126/science.287.5461.2185. PMID 10731132.
Goff SA, Ricke D, Lan TH, Presting G, Wang R, Dunn M, et al. (April 2002). "A draft sequence of the rice genome (Oryza sativa L. ssp. japonica)". Science. 296 (5565): 92–100. Bibcode:2002Sci...296...92G. doi:10.1126/science.1068275. PMID 11935018. S2CID 2960202.
Bolser D, Staines DM, Pritchard E, Kersey P (2016). "Ensembl Plants: Integrating Tools for Visualizing, Mining, and Analyzing Plant Genomics Data". Plant Bioinformatics. Methods in Molecular Biology. Vol. 1374. Humana Press, New York, NY. pp. 115–140. doi:10.1007/978-1-4939-3167-5_6. ISBN 9781493931668. PMID 26519403.
Gupta P, Naithani S, Tello-Ruiz MK, Chougule K, D'Eustachio P, Fabregat A, et al. (November 2016). "Gramene Database: Navigating Plant Comparative Genomics Resources". Current Plant Biology. 7–8: 10–15. Bibcode:2016CPBio...7...10G. doi:10.1016/j.cpb.2016.12.005. PMC 5509230. PMID 28713666.
Nakaya A, Ichihara H, Asamizu E, Shirasawa S, Nakamura Y, Tabata S, Hirakawa H (2017). "Plant Genome DataBase Japan (PGDBJ)". Plant Genomics Databases. Methods in Molecular Biology. Vol. 1533. New York, NY: Humana Press. pp. 45–77. doi:10.1007/978-1-4939-6658-5_3. ISBN 9781493966561. PMID 27987164.
Spannagl M, Nussbaumer T, Bader K, Gundlach H, Mayer KF (2017). "PGSB/MIPS PlantsDB Database Framework for the Integration and Analysis of Plant Genome Data". Plant Genomics Databases. Methods in Molecular Biology. Vol. 1533. New York, NY: Humana Press. pp. 33–44. doi:10.1007/978-1-4939-6658-5_2. ISBN 9781493966561. PMID 27987163.
Vandepoele K (2017). "A Guide to the PLAZA 3.0 Plant Comparative Genomic Database". Plant Genomics Databases. Methods in Molecular Biology. Vol. 1533. Humana Press, New York, NY. pp. 183–200. doi:10.1007/978-1-4939-6658-5_10. ISBN 9781493966561. PMID 27987171.
Van Bel M, Silvestri F, Weitz EM, Kreft L, Botzki A, Coppens F, Vandepoele K (January 2022). "PLAZA 5.0: extending the scope and power of comparative and functional genomics in plants". Nucleic Acids Research. 50 (D1): D1468 – D1474. doi:10.1093/nar/gkab1024. PMC 8728282. PMID 34747486.
Reiser L, Berardini TZ, Li D, Muller R, Strait EM, Li Q, et al. (2016-01-01). "Sustainable funding for biocuration: The Arabidopsis Information Resource (TAIR) as a case study of a subscription-based funding model". Database. 2016: baw018. doi:10.1093/database/baw018. PMC 4795935. PMID 26989150.
Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, et al. (November 2009). "The B73 maize genome: complexity, diversity, and dynamics". Science. 326 (5956): 1112–1115. Bibcode:2009Sci...326.1112S. doi:10.1126/science.1178534. PMID 19965430. S2CID 21433160.
Feuillet C, Leach JE, Rogers J, Schnable PS, Eversole K (February 2011). "Crop genome sequencing: lessons and rationales". Trends in Plant Science. 16 (2): 77–88. Bibcode:2011TPS....16...77F. doi:10.1016/j.tplants.2010.10.005. PMID 21081278.
Saegusa A (April 1999). "US firm's bid to sequence rice genome causes stir in Japan". Nature. 398 (6728): 545. Bibcode:1999Natur.398..545S. doi:10.1038/19123. PMID 10217128.
Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, et al. (September 2007). "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla". Nature. 449 (7161): 463–467. Bibcode:2007Natur.449..463J. doi:10.1038/nature06148. hdl:11577/2430527. PMID 17721507.
Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, et al. (April 2008). "The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)". Nature. 452 (7190): 991–996. Bibcode:2008Natur.452..991M. doi:10.1038/nature06856. PMC 2836516. PMID 18432245.
Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, et al. (September 2006). "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)". Science (Submitted manuscript). 313 (5793): 1596–1604. Bibcode:2006Sci...313.1596T. doi:10.1126/science.1128691. PMID 16973872. S2CID 7717980. Archived from the original on 2023-05-29. Retrieved 2023-06-19.
Swan KA, Curtis DE, McKusick KB, Voinov AV, Mapa FA, Cancilla MR (July 2002). "High-throughput gene mapping in Caenorhabditis elegans". Genome Research. 12 (7): 1100–1105. doi:10.1101/gr.208902. PMC 186621. PMID 12097347.
The International Brachypodium Initiative; et al. (February 2010). "Genome sequencing and analysis of the model grass Brachypodium distachyon". Nature. 463 (7282): 763–768. Bibcode:2010Natur.463..763T. doi:10.1038/nature08747. PMID 20148030.
Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, et al. (January 2009). "The Sorghum bicolor genome and the diversification of grasses". Nature. 457 (7229): 551–556. Bibcode:2009Natur.457..551P. doi:10.1038/nature07723. PMID 19189423.
Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, et al. (January 2010). "Genome sequence of the palaeopolyploid soybean". Nature. 463 (7278): 178–183. Bibcode:2010Natur.463..178S. doi:10.1038/nature08670. PMID 20075913. S2CID 4372224.
Huang S, Li R, Zhang Z, Li L, Gu X, Fan W, et al. (December 2009). "The genome of the cucumber, Cucumis sativus L". Nature Genetics. 41 (12): 1275–1281. doi:10.1038/ng.475. PMID 19881527.
Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, et al. (February 2011). "The genome of Theobroma cacao". Nature Genetics. 43 (2): 101–108. doi:10.1038/ng.736. PMID 21186351. S2CID 4685532.
Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, et al. (October 2010). "The genome of the domesticated apple (Malus × domestica Borkh.)". Nature Genetics. 42 (10): 833–839. doi:10.1038/ng.654. PMID 20802477.
Wang K, Wang Z, Li F, Ye W, Wang J, Song G, et al. (October 2012). "The draft genome of a diploid cotton Gossypium raimondii". Nature Genetics. 44 (10): 1098–1103. doi:10.1038/ng.2371. PMID 22922876. S2CID 38495587.
Xu Q, Chen LL, Ruan X, Chen D, Zhu A, Chen C, et al. (January 2013). "The draft genome of sweet orange (Citrus sinensis)". Nature Genetics. 45 (1): 59–66. doi:10.1038/ng.2472. PMID 23179022.
Tomato Genome Consortium (May 2012). "The tomato genome sequence provides insights into fleshy fruit evolution". Nature. 485 (7400): 635–641. Bibcode:2012Natur.485..635T. doi:10.1038/nature11119. PMC 3378239. PMID 22660326.
Bleidorn C (2015). "Third generation sequencing: technology and its potential impact on evolutionary biodiversity research". Systematics and Biodiversity. 14 (1): 1. Bibcode:2016SyBio..14....1B. doi:10.1080/14772000.2015.1099575.
Lee H, Gurtowski J, Yoo S, Nattestad M, Marcus S, Goodwin S, McCombie WR, Schatz M (2016-04-13). "Third-generation sequencing and the future of genomics". bioRxiv: 048603. doi:10.1101/048603.
Chin CS, Alexander DH, Marks P, Klammer AA, Drake J, Heiner C, et al. (June 2013). "Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data". Nature Methods. 10 (6): 563–569. doi:10.1038/nmeth.2474. PMID 23644548. S2CID 205421576.
Daccord N, Celton JM, Linsmith G, Becker C, Choisne N, Schijlen E, et al. (July 2017). "High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development". Nature Genetics. 49 (7): 1099–1106. doi:10.1038/ng.3886. hdl:10449/42064. PMID 28581499. S2CID 24690391.
Luo R, Liu B, Xie Y, Li Z, Huang W, Yuan J, et al. (December 2012). "SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler". GigaScience. 1 (1): 18. doi:10.1186/2047-217X-1-18. PMC 3626529. PMID 23587118. S2CID 2681931.
Ye C, Hill CM, Wu S, Ruan J, Ma ZS (August 2016). "DBG2OLC: Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies". Scientific Reports. 6 (1): 31900. Bibcode:2016NatSR...631900Y. doi:10.1038/srep31900. PMC 5004134. PMID 27573208.

escholarship.org

Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, et al. (September 2006). "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)". Science (Submitted manuscript). 313 (5793): 1596–1604. Bibcode:2006Sci...313.1596T. doi:10.1126/science.1128691. PMID 16973872. S2CID 7717980. Archived from the original on 2023-05-29. Retrieved 2023-06-19.

handle.net

hdl.handle.net

Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, et al. (September 2007). "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla". Nature. 449 (7161): 463–467. Bibcode:2007Natur.449..463J. doi:10.1038/nature06148. hdl:11577/2430527. PMID 17721507.
Daccord N, Celton JM, Linsmith G, Becker C, Choisne N, Schijlen E, et al. (July 2017). "High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development". Nature Genetics. 49 (7): 1099–1106. doi:10.1038/ng.3886. hdl:10449/42064. PMID 28581499. S2CID 24690391.

harvard.edu

ui.adsabs.harvard.edu

Michael TP, VanBuren R (April 2015). "Progress, challenges and the future of crop genomes". Current Opinion in Plant Biology. 24: 71–81. Bibcode:2015COPB...24...71M. doi:10.1016/j.pbi.2015.02.002. PMID 25703261.
The Arabidopsis Genome Initiative (December 2000). "Analysis of the genome sequence of the flowering plant Arabidopsis thaliana". Nature. 408 (6814): 796–815. Bibcode:2000Natur.408..796T. doi:10.1038/35048692. PMID 11130711.
The C. elegans Sequencing Consortium (December 1998). "Genome sequence of the nematode C. elegans: a platform for investigating biology". Science. 282 (5396): 2012–2018. Bibcode:1998Sci...282.2012.. doi:10.1126/science.282.5396.2012. JSTOR 2897605. PMID 9851916.
Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, et al. (March 2000). "The genome sequence of Drosophila melanogaster". Science. 287 (5461): 2185–2195. Bibcode:2000Sci...287.2185.. CiteSeerX 10.1.1.549.8639. doi:10.1126/science.287.5461.2185. PMID 10731132.
Goff SA, Ricke D, Lan TH, Presting G, Wang R, Dunn M, et al. (April 2002). "A draft sequence of the rice genome (Oryza sativa L. ssp. japonica)". Science. 296 (5565): 92–100. Bibcode:2002Sci...296...92G. doi:10.1126/science.1068275. PMID 11935018. S2CID 2960202.
Gupta P, Naithani S, Tello-Ruiz MK, Chougule K, D'Eustachio P, Fabregat A, et al. (November 2016). "Gramene Database: Navigating Plant Comparative Genomics Resources". Current Plant Biology. 7–8: 10–15. Bibcode:2016CPBio...7...10G. doi:10.1016/j.cpb.2016.12.005. PMC 5509230. PMID 28713666.
Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, et al. (November 2009). "The B73 maize genome: complexity, diversity, and dynamics". Science. 326 (5956): 1112–1115. Bibcode:2009Sci...326.1112S. doi:10.1126/science.1178534. PMID 19965430. S2CID 21433160.
Feuillet C, Leach JE, Rogers J, Schnable PS, Eversole K (February 2011). "Crop genome sequencing: lessons and rationales". Trends in Plant Science. 16 (2): 77–88. Bibcode:2011TPS....16...77F. doi:10.1016/j.tplants.2010.10.005. PMID 21081278.
Saegusa A (April 1999). "US firm's bid to sequence rice genome causes stir in Japan". Nature. 398 (6728): 545. Bibcode:1999Natur.398..545S. doi:10.1038/19123. PMID 10217128.
Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, et al. (September 2007). "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla". Nature. 449 (7161): 463–467. Bibcode:2007Natur.449..463J. doi:10.1038/nature06148. hdl:11577/2430527. PMID 17721507.
Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, et al. (April 2008). "The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)". Nature. 452 (7190): 991–996. Bibcode:2008Natur.452..991M. doi:10.1038/nature06856. PMC 2836516. PMID 18432245.
Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, et al. (September 2006). "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)". Science (Submitted manuscript). 313 (5793): 1596–1604. Bibcode:2006Sci...313.1596T. doi:10.1126/science.1128691. PMID 16973872. S2CID 7717980. Archived from the original on 2023-05-29. Retrieved 2023-06-19.
The International Brachypodium Initiative; et al. (February 2010). "Genome sequencing and analysis of the model grass Brachypodium distachyon". Nature. 463 (7282): 763–768. Bibcode:2010Natur.463..763T. doi:10.1038/nature08747. PMID 20148030.
Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, et al. (January 2009). "The Sorghum bicolor genome and the diversification of grasses". Nature. 457 (7229): 551–556. Bibcode:2009Natur.457..551P. doi:10.1038/nature07723. PMID 19189423.
Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, et al. (January 2010). "Genome sequence of the palaeopolyploid soybean". Nature. 463 (7278): 178–183. Bibcode:2010Natur.463..178S. doi:10.1038/nature08670. PMID 20075913. S2CID 4372224.
Tomato Genome Consortium (May 2012). "The tomato genome sequence provides insights into fleshy fruit evolution". Nature. 485 (7400): 635–641. Bibcode:2012Natur.485..635T. doi:10.1038/nature11119. PMC 3378239. PMID 22660326.
Bleidorn C (2015). "Third generation sequencing: technology and its potential impact on evolutionary biodiversity research". Systematics and Biodiversity. 14 (1): 1. Bibcode:2016SyBio..14....1B. doi:10.1080/14772000.2015.1099575.
Ye C, Hill CM, Wu S, Ruan J, Ma ZS (August 2016). "DBG2OLC: Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies". Scientific Reports. 6 (1): 31900. Bibcode:2016NatSR...631900Y. doi:10.1038/srep31900. PMC 5004134. PMID 27573208.

jstor.org

The C. elegans Sequencing Consortium (December 1998). "Genome sequence of the nematode C. elegans: a platform for investigating biology". Science. 282 (5396): 2012–2018. Bibcode:1998Sci...282.2012.. doi:10.1126/science.282.5396.2012. JSTOR 2897605. PMID 9851916.

nih.gov

pubmed.ncbi.nlm.nih.gov

Moreau H, Verhelst B, Couloux A, Derelle E, Rombauts S, Grimsley N, et al. (August 2012). "Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage". Genome Biology. 13 (8): R74. doi:10.1186/gb-2012-13-8-r74. PMC 3491373. PMID 22925495.
Gregory TR (January 2005). "The C-value enigma in plants and animals: a review of parallels and an appeal for partnership". Annals of Botany. 95 (1): 133–146. doi:10.1093/aob/mci009. PMC 4246714. PMID 15596463.
Zimin A, Stevens KA, Crepeau MW, Holtz-Morris A, Koriabine M, Marçais G, et al. (March 2014). "Sequencing and assembly of the 22-gb loblolly pine genome". Genetics. 196 (3): 875–890. doi:10.1534/genetics.113.159715. PMC 3948813. PMID 24653210.
Shendure J, Ji H (October 2008). "Next-generation DNA sequencing". Nature Biotechnology. 26 (10): 1135–1145. doi:10.1038/nbt1486. PMID 18846087. S2CID 6384349.
Treangen TJ, Salzberg SL (November 2011). "Repetitive DNA and next-generation sequencing: computational challenges and solutions". Nature Reviews. Genetics. 13 (1): 36–46. doi:10.1038/nrg3117. PMC 3324860. PMID 22124482.
Harrison GE, Heslop-Harrison JS (February 1995). "Centromeric repetitive DNA sequences in the genus Brassica". Theoretical and Applied Genetics. 90 (2): 157–165. doi:10.1007/BF00222197. PMID 24173886. S2CID 20591213.
Lanciano S, Carpentier MC, Llauro C, Jobet E, Robakowska-Hyzorek D, Lasserre E, et al. (February 2017). "Sequencing the extrachromosomal circular mobilome reveals retrotransposon activity in plants". PLOS Genetics. 13 (2): e1006630. doi:10.1371/journal.pgen.1006630. PMC 5338827. PMID 28212378.
Michael TP, VanBuren R (April 2015). "Progress, challenges and the future of crop genomes". Current Opinion in Plant Biology. 24: 71–81. Bibcode:2015COPB...24...71M. doi:10.1016/j.pbi.2015.02.002. PMID 25703261.
Meyers LA, Levin DA (June 2006). "On the abundance of polyploids in flowering plants". Evolution; International Journal of Organic Evolution. 60 (6): 1198–1206. doi:10.1554/05-629.1. PMID 16892970. S2CID 198156503.
The Arabidopsis Genome Initiative (December 2000). "Analysis of the genome sequence of the flowering plant Arabidopsis thaliana". Nature. 408 (6814): 796–815. Bibcode:2000Natur.408..796T. doi:10.1038/35048692. PMID 11130711.
The C. elegans Sequencing Consortium (December 1998). "Genome sequence of the nematode C. elegans: a platform for investigating biology". Science. 282 (5396): 2012–2018. Bibcode:1998Sci...282.2012.. doi:10.1126/science.282.5396.2012. JSTOR 2897605. PMID 9851916.
Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, et al. (March 2000). "The genome sequence of Drosophila melanogaster". Science. 287 (5461): 2185–2195. Bibcode:2000Sci...287.2185.. CiteSeerX 10.1.1.549.8639. doi:10.1126/science.287.5461.2185. PMID 10731132.
Goff SA, Ricke D, Lan TH, Presting G, Wang R, Dunn M, et al. (April 2002). "A draft sequence of the rice genome (Oryza sativa L. ssp. japonica)". Science. 296 (5565): 92–100. Bibcode:2002Sci...296...92G. doi:10.1126/science.1068275. PMID 11935018. S2CID 2960202.
Bolser D, Staines DM, Pritchard E, Kersey P (2016). "Ensembl Plants: Integrating Tools for Visualizing, Mining, and Analyzing Plant Genomics Data". Plant Bioinformatics. Methods in Molecular Biology. Vol. 1374. Humana Press, New York, NY. pp. 115–140. doi:10.1007/978-1-4939-3167-5_6. ISBN 9781493931668. PMID 26519403.
Gupta P, Naithani S, Tello-Ruiz MK, Chougule K, D'Eustachio P, Fabregat A, et al. (November 2016). "Gramene Database: Navigating Plant Comparative Genomics Resources". Current Plant Biology. 7–8: 10–15. Bibcode:2016CPBio...7...10G. doi:10.1016/j.cpb.2016.12.005. PMC 5509230. PMID 28713666.
Nakaya A, Ichihara H, Asamizu E, Shirasawa S, Nakamura Y, Tabata S, Hirakawa H (2017). "Plant Genome DataBase Japan (PGDBJ)". Plant Genomics Databases. Methods in Molecular Biology. Vol. 1533. New York, NY: Humana Press. pp. 45–77. doi:10.1007/978-1-4939-6658-5_3. ISBN 9781493966561. PMID 27987164.
Spannagl M, Nussbaumer T, Bader K, Gundlach H, Mayer KF (2017). "PGSB/MIPS PlantsDB Database Framework for the Integration and Analysis of Plant Genome Data". Plant Genomics Databases. Methods in Molecular Biology. Vol. 1533. New York, NY: Humana Press. pp. 33–44. doi:10.1007/978-1-4939-6658-5_2. ISBN 9781493966561. PMID 27987163.
Vandepoele K (2017). "A Guide to the PLAZA 3.0 Plant Comparative Genomic Database". Plant Genomics Databases. Methods in Molecular Biology. Vol. 1533. Humana Press, New York, NY. pp. 183–200. doi:10.1007/978-1-4939-6658-5_10. ISBN 9781493966561. PMID 27987171.
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Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, et al. (September 2006). "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)". Science (Submitted manuscript). 313 (5793): 1596–1604. Bibcode:2006Sci...313.1596T. doi:10.1126/science.1128691. PMID 16973872. S2CID 7717980. Archived from the original on 2023-05-29. Retrieved 2023-06-19.