Post-translational modification (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Post-translational modification" in English language version.

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1books.google.com

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1semanticscholar.org

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1horizonpress.com

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archive.org (Global: 6^th place; English: 6^th place)

Pratt, Charlotte W.; Voet, Judith G.; Voet, Donald (2006). Fundamentals of Biochemistry: Life at the Molecular Level (2nd ed.). Hoboken, NJ: Wiley. ISBN 9780471214953. OCLC 1280801548. Alt URL
Lodish H, Berk A, Zipursky SL, et al. (2000). "17.6, Post-Translational Modifications and Quality Control in the Rough ER". Molecular Cell Biology (4th ed.). New York: W. H. Freeman. ISBN 978-0-7167-3136-8.

books.google.com (Global: 3^rd place; English: 3^rd place)

Pratt, Charlotte W.; Voet, Judith G.; Voet, Donald (2006). Fundamentals of Biochemistry: Life at the Molecular Level (2nd ed.). Hoboken, NJ: Wiley. ISBN 9780471214953. OCLC 1280801548. Alt URL

doi.org (Global: 2^nd place; English: 2^nd place)

Khoury GA, Baliban RC, Floudas CA (September 2011). "Proteome-wide post-translational modification statistics: frequency analysis and curation of the swiss-prot database". Scientific Reports. 1 90. Bibcode:2011NatSR...1...90K. doi:10.1038/srep00090. PMC 3201773. PMID 22034591.
Dalle-Donne I, Aldini G, Carini M, Colombo R, Rossi R, Milzani A (2006). "Protein carbonylation, cellular dysfunction, and disease progression". Journal of Cellular and Molecular Medicine. 10 (2): 389–406. doi:10.1111/j.1582-4934.2006.tb00407.x. PMC 3933129. PMID 16796807.
Grimsrud PA, Xie H, Griffin TJ, Bernlohr DA (August 2008). "Oxidative stress and covalent modification of protein with bioactive aldehydes". The Journal of Biological Chemistry. 283 (32): 21837–41. doi:10.1074/jbc.R700019200. PMC 2494933. PMID 18445586.
Gianazza E, Crawford J, Miller I (July 2007). "Detecting oxidative post-translational modifications in proteins". Amino Acids. 33 (1): 51–6. doi:10.1007/s00726-006-0410-2. PMID 17021655. S2CID 23819101.
Peana, Massimiliano (19 August 2024). "Interplay of Metal Ions and Posttranslational Modifications in Proteins". European Journal of Inorganic Chemistry. 27 (31) e202400175. Bibcode:2024EJIC...27E0175P. doi:10.1002/ejic.202400175.
Whiteheart SW, Shenbagamurthi P, Chen L, Cotter RJ, Hart GW, et al. (August 1989). "Murine elongation factor 1 alpha (EF-1 alpha) is posttranslationally modified by novel amide-linked ethanolamine-phosphoglycerol moieties. Addition of ethanolamine-phosphoglycerol to specific glutamic acid residues on EF-1 alpha". The Journal of Biological Chemistry. 264 (24): 14334–41. doi:10.1016/S0021-9258(18)71682-7. PMID 2569467.
Roy H, Zou SB, Bullwinkle TJ, Wolfe BS, Gilreath MS, Forsyth CJ, Navarre WW, Ibba M (August 2011). "The tRNA synthetase paralog PoxA modifies elongation factor-P with (R)-β-lysine". Nature Chemical Biology. 7 (10): 667–9. doi:10.1038/nchembio.632. PMC 3177975. PMID 21841797.
Ali I, Conrad RJ, Verdin E, Ott M (February 2018). "Lysine Acetylation Goes Global: From Epigenetics to Metabolism and Therapeutics". Chem Rev. 118 (3): 1216–1252. doi:10.1021/acs.chemrev.7b00181. PMC 6609103. PMID 29405707.
Bradbury AF, Smyth DG (March 1991). "Peptide amidation". Trends in Biochemical Sciences. 16 (3): 112–5. doi:10.1016/0968-0004(91)90044-v. PMID 2057999.
Eddé B, Rossier J, Le Caer JP, Desbruyères E, Gros F, Denoulet P (January 1990). "Posttranslational glutamylation of alpha-tubulin". Science. 247 (4938): 83–5. Bibcode:1990Sci...247...83E. doi:10.1126/science.1967194. PMID 1967194.
Walker CS, Shetty RP, Clark K, Kazuko SG, Letsou A, Olivera BM, Bandyopadhyay PK, et al. (March 2001). "On a potential global role for vitamin K-dependent gamma-carboxylation in animal systems. Evidence for a gamma-glutamyl carboxylase in Drosophila". The Journal of Biological Chemistry. 276 (11): 7769–74. doi:10.1074/jbc.M009576200. PMID 11110799.
Chung HS, et al. (January 2013). "Cysteine oxidative posttranslational modifications: emerging regulation in the cardiovascular system". Circulation Research. 112 (2): 382–92. doi:10.1161/CIRCRESAHA.112.268680. PMC 4340704. PMID 23329793.
Jaisson S, Pietrement C, Gillery P (November 2011). "Carbamylation-derived products: bioactive compounds and potential biomarkers in chronic renal failure and atherosclerosis". Clinical Chemistry. 57 (11): 1499–505. doi:10.1373/clinchem.2011.163188. PMID 21768218.
Tan, Minjia; Peng, Chao; Anderson, Kristin A.; Chhoy, Peter; Xie, Zhongyu; Dai, Lunzhi; Park, Jeongsoon; Chen, Yue; Huang, He; Zhang, Yi; Ro, Jennifer; Wagner, Gregory R.; Green, Michelle F.; Madsen, Andreas S.; Schmiesing, Jessica; Peterson, Brett S.; Xu, Guofeng; Ilkayeva, Olga R.; Muehlbauer, Michael J.; Braulke, Thomas; Mühlhausen, Chris; Backos, Donald S.; Olsen, Christian A.; McGuire, Peter J.; Pletcher, Scott D.; Lombard, David B.; Hirschey, Matthew D.; Zhao, Yingming (April 2014). "Lysine Glutarylation Is a Protein Posttranslational Modification Regulated by SIRT5". Cell Metabolism. 19 (4): 605–617. doi:10.1016/j.cmet.2014.03.014. PMC 4108075. PMID 24703693.
Peng, Chao; Lu, Zhike; Xie, Zhongyu; Cheng, Zhongyi; Chen, Yue; Tan, Minjia; Luo, Hao; Zhang, Yi; He, Wendy; Yang, Ke; Zwaans, Bernadette M.M.; Tishkoff, Daniel; Ho, Linh; Lombard, David; He, Tong-Chuan; Dai, Junbiao; Verdin, Eric; Ye, Yang; Zhao, Yingming (December 2011). "The First Identification of Lysine Malonylation Substrates and Its Regulatory Enzyme". Molecular & Cellular Proteomics. 10 (12) M111.012658. doi:10.1074/mcp.M111.012658. PMC 3237090. PMID 21908771.
Head, PamelaSara E.; Myung, Sangho; Chen, Yong; Schneller, Jessica L.; Wang, Cindy; Duncan, Nicholas; Hoffman, Pauline; Chang, David; Gebremariam, Abigael; Gucek, Marjan; Manoli, Irini; Venditti, Charles P. (25 May 2022). "Aberrant methylmalonylation underlies methylmalonic acidemia and is attenuated by an engineered sirtuin". Science Translational Medicine. 14 (646) eabn4772. doi:10.1126/scitranslmed.abn4772. PMC 10468269. PMID 35613279.
Kang HJ, Baker EN (April 2011). "Intramolecular isopeptide bonds: protein crosslinks built for stress?". Trends in Biochemical Sciences. 36 (4): 229–37. doi:10.1016/j.tibs.2010.09.007. PMID 21055949.
Zhang, Zhihong; Tan, Minjia; Xie, Zhongyu; Dai, Lunzhi; Chen, Yue; Zhao, Yingming (January 2011). "Identification of lysine succinylation as a new post-translational modification". Nature Chemical Biology. 7 (1): 58–63. doi:10.1038/nchembio.495. PMC 3065206. PMID 21151122.
Stark GR, Stein WH, Moore X (1960). "Reactions of the Cyanate Present in Aqueous Urea with Amino Acids and Proteins". J Biol Chem. 235 (11): 3177–3181. doi:10.1016/S0021-9258(20)81332-5.
Malakhova OA, Yan M, Malakhov MP, Yuan Y, Ritchie KJ, Kim KI, Peterson LF, Shuai K, Zhang DE (February 2003). "Protein ISGylation modulates the JAK-STAT signaling pathway". Genes & Development. 17 (4): 455–60. doi:10.1101/gad.1056303. PMC 195994. PMID 12600939.
Klareskog L, Rönnelid J, Lundberg K, Padyukov L, Alfredsson L (2008). "Immunity to citrullinated proteins in rheumatoid arthritis". Annual Review of Immunology. 26: 651–75. doi:10.1146/annurev.immunol.26.021607.090244. PMID 18173373.
Brennan DF, Barford D (March 2009). "Eliminylation: a post-translational modification catalyzed by phosphothreonine lyases". Trends in Biochemical Sciences. 34 (3): 108–14. doi:10.1016/j.tibs.2008.11.005. PMID 19233656.
Rabe von Pappenheim, Fabian; Wensien, Marie; Ye, Jin; Uranga, Jon; Irisarri, Iker; de Vries, Jan; Funk, Lisa-Marie; Mata, Ricardo A.; Tittmann, Kai (April 2022). "Widespread occurrence of covalent lysine–cysteine redox switches in proteins". Nature Chemical Biology. 18 (4): 368–375. doi:10.1038/s41589-021-00966-5. PMC 8964421. PMID 35165445.
Khoury GA, Baliban RC, Floudas CA (September 2011). "Proteome-wide post-translational modification statistics: frequency analysis and curation of the swiss-prot database". Scientific Reports. 1 (90) 90. Bibcode:2011NatSR...1...90K. doi:10.1038/srep00090. PMC 3201773. PMID 22034591.
Lee TY, Huang HD, Hung JH, Huang HY, Yang YS, Wang TH (January 2006). "dbPTM: an information repository of protein post-translational modification". Nucleic Acids Research. 34 (Database issue): D622-7. doi:10.1093/nar/gkj083. PMC 1347446. PMID 16381945.
Hornbeck PV, Zhang B, Murray B, Kornhauser JM, Latham V, Skrzypek E (January 2015). "PhosphoSitePlus, 2014: mutations, PTMs and recalibrations". Nucleic Acids Research. 43 (Database issue): D512-20. doi:10.1093/nar/gku1267. PMC 4383998. PMID 25514926.
Goel R, Harsha HC, Pandey A, Prasad TS (February 2012). "Human Protein Reference Database and Human Proteinpedia as resources for phosphoproteome analysis". Molecular BioSystems. 8 (2): 453–63. doi:10.1039/c1mb05340j. PMC 3804167. PMID 22159132.
Sigrist CJ, Cerutti L, de Castro E, Langendijk-Genevaux PS, Bulliard V, Bairoch A, Hulo N (January 2010). "PROSITE, a protein domain database for functional characterization and annotation". Nucleic Acids Research. 38 (Database issue): D161-6. doi:10.1093/nar/gkp885. PMC 2808866. PMID 19858104.
Garavelli JS (January 2003). "The RESID Database of Protein Modifications: 2003 developments". Nucleic Acids Research. 31 (1): 499–501. doi:10.1093/nar/gkg038. PMC 165485. PMID 12520062.
Huang H, Arighi CN, Ross KE, Ren J, Li G, Chen SC, Wang Q, Cowart J, Vijay-Shanker K, Wu CH (January 2018). "iPTMnet: an integrated resource for protein post-translational modification network discovery". Nucleic Acids Research. 46 (1): D542 – D550. doi:10.1093/nar/gkx1104. PMC 5753337. PMID 2914561.
Audagnotto M, Dal Peraro M (2017-03-31). "In silico prediction tools and molecular modeling". Computational and Structural Biotechnology Journal. 15: 307–319. doi:10.1016/j.csbj.2017.03.004. PMC 5397102. PMID 28458782.
Wulff-Fuentes E, Berendt RR, Massman L, Danner L, Malard F, Vora J, Kahsay R, Olivier-Van Stichelen S (January 2021). "The human O-GlcNAcome database and meta-analysis". Scientific Data. 8 (1) 25. Bibcode:2021NatSD...8...25W. doi:10.1038/s41597-021-00810-4. PMC 7820439. PMID 33479245.
Malard F, Wulff-Fuentes E, Berendt RR, Didier G, Olivier-Van Stichelen S (July 2021). "Automatization and self-maintenance of the O-GlcNAcome catalog: a smart scientific database". Database (Oxford). 2021 baab039: 1. doi:10.1093/database/baab039. PMC 8288053. PMID 34279596.
Warnecke A, Sandalova T, Achour A, Harris RA (November 2014). "PyTMs: a useful PyMOL plugin for modeling common post-translational modifications". BMC Bioinformatics. 15 (1) 370. doi:10.1186/s12859-014-0370-6. PMC 4256751. PMID 25431162.
Yang Y, Peng X, Ying P, Tian J, Li J, Ke J, Zhu Y, Gong Y, Zou D, Yang N, Wang X, Mei S, Zhong R, Gong J, Chang J, Miao X (January 2019). "AWESOME: a database of SNPs that affect protein post-translational modifications". Nucleic Acids Research. 47 (D1): D874 – D880. doi:10.1093/nar/gky821. PMC 6324025. PMID 30215764.
Morris JH, Huang CC, Babbitt PC, Ferrin TE (September 2007). "structureViz: linking Cytoscape and UCSF Chimera". Bioinformatics. 23 (17): 2345–7. doi:10.1093/bioinformatics/btm329. PMID 17623706.
Peana, Massimiliano (19 August 2024). "Interplay of Metal Ions and Posttranslational Modifications in Proteins". European Journal of Inorganic Chemistry. 27 (31) e202400175. Bibcode:2024EJIC...27E0175P. doi:10.1002/ejic.202400175.

harvard.edu (Global: 18^th place; English: 17^th place)

ui.adsabs.harvard.edu

Khoury GA, Baliban RC, Floudas CA (September 2011). "Proteome-wide post-translational modification statistics: frequency analysis and curation of the swiss-prot database". Scientific Reports. 1 90. Bibcode:2011NatSR...1...90K. doi:10.1038/srep00090. PMC 3201773. PMID 22034591.
Peana, Massimiliano (19 August 2024). "Interplay of Metal Ions and Posttranslational Modifications in Proteins". European Journal of Inorganic Chemistry. 27 (31) e202400175. Bibcode:2024EJIC...27E0175P. doi:10.1002/ejic.202400175.
Eddé B, Rossier J, Le Caer JP, Desbruyères E, Gros F, Denoulet P (January 1990). "Posttranslational glutamylation of alpha-tubulin". Science. 247 (4938): 83–5. Bibcode:1990Sci...247...83E. doi:10.1126/science.1967194. PMID 1967194.
Khoury GA, Baliban RC, Floudas CA (September 2011). "Proteome-wide post-translational modification statistics: frequency analysis and curation of the swiss-prot database". Scientific Reports. 1 (90) 90. Bibcode:2011NatSR...1...90K. doi:10.1038/srep00090. PMC 3201773. PMID 22034591.
Wulff-Fuentes E, Berendt RR, Massman L, Danner L, Malard F, Vora J, Kahsay R, Olivier-Van Stichelen S (January 2021). "The human O-GlcNAcome database and meta-analysis". Scientific Data. 8 (1) 25. Bibcode:2021NatSD...8...25W. doi:10.1038/s41597-021-00810-4. PMC 7820439. PMID 33479245.
Peana, Massimiliano (19 August 2024). "Interplay of Metal Ions and Posttranslational Modifications in Proteins". European Journal of Inorganic Chemistry. 27 (31) e202400175. Bibcode:2024EJIC...27E0175P. doi:10.1002/ejic.202400175.

horizonpress.com (Global: low place; English: low place)

Van G. Wilson (Ed.) (2004). Sumoylation: Molecular Biology and Biochemistry Archived 2005-02-09 at the Wayback Machine. Horizon Bioscience. ISBN 0-9545232-8-8.

nih.gov (Global: 4^th place; English: 4^th place)

pubmed.ncbi.nlm.nih.gov

Khoury GA, Baliban RC, Floudas CA (September 2011). "Proteome-wide post-translational modification statistics: frequency analysis and curation of the swiss-prot database". Scientific Reports. 1 90. Bibcode:2011NatSR...1...90K. doi:10.1038/srep00090. PMC 3201773. PMID 22034591.
Dalle-Donne I, Aldini G, Carini M, Colombo R, Rossi R, Milzani A (2006). "Protein carbonylation, cellular dysfunction, and disease progression". Journal of Cellular and Molecular Medicine. 10 (2): 389–406. doi:10.1111/j.1582-4934.2006.tb00407.x. PMC 3933129. PMID 16796807.
Grimsrud PA, Xie H, Griffin TJ, Bernlohr DA (August 2008). "Oxidative stress and covalent modification of protein with bioactive aldehydes". The Journal of Biological Chemistry. 283 (32): 21837–41. doi:10.1074/jbc.R700019200. PMC 2494933. PMID 18445586.
Gianazza E, Crawford J, Miller I (July 2007). "Detecting oxidative post-translational modifications in proteins". Amino Acids. 33 (1): 51–6. doi:10.1007/s00726-006-0410-2. PMID 17021655. S2CID 23819101.
Whiteheart SW, Shenbagamurthi P, Chen L, Cotter RJ, Hart GW, et al. (August 1989). "Murine elongation factor 1 alpha (EF-1 alpha) is posttranslationally modified by novel amide-linked ethanolamine-phosphoglycerol moieties. Addition of ethanolamine-phosphoglycerol to specific glutamic acid residues on EF-1 alpha". The Journal of Biological Chemistry. 264 (24): 14334–41. doi:10.1016/S0021-9258(18)71682-7. PMID 2569467.
Roy H, Zou SB, Bullwinkle TJ, Wolfe BS, Gilreath MS, Forsyth CJ, Navarre WW, Ibba M (August 2011). "The tRNA synthetase paralog PoxA modifies elongation factor-P with (R)-β-lysine". Nature Chemical Biology. 7 (10): 667–9. doi:10.1038/nchembio.632. PMC 3177975. PMID 21841797.
Ali I, Conrad RJ, Verdin E, Ott M (February 2018). "Lysine Acetylation Goes Global: From Epigenetics to Metabolism and Therapeutics". Chem Rev. 118 (3): 1216–1252. doi:10.1021/acs.chemrev.7b00181. PMC 6609103. PMID 29405707.
Bradbury AF, Smyth DG (March 1991). "Peptide amidation". Trends in Biochemical Sciences. 16 (3): 112–5. doi:10.1016/0968-0004(91)90044-v. PMID 2057999.
Eddé B, Rossier J, Le Caer JP, Desbruyères E, Gros F, Denoulet P (January 1990). "Posttranslational glutamylation of alpha-tubulin". Science. 247 (4938): 83–5. Bibcode:1990Sci...247...83E. doi:10.1126/science.1967194. PMID 1967194.
Walker CS, Shetty RP, Clark K, Kazuko SG, Letsou A, Olivera BM, Bandyopadhyay PK, et al. (March 2001). "On a potential global role for vitamin K-dependent gamma-carboxylation in animal systems. Evidence for a gamma-glutamyl carboxylase in Drosophila". The Journal of Biological Chemistry. 276 (11): 7769–74. doi:10.1074/jbc.M009576200. PMID 11110799.
Chung HS, et al. (January 2013). "Cysteine oxidative posttranslational modifications: emerging regulation in the cardiovascular system". Circulation Research. 112 (2): 382–92. doi:10.1161/CIRCRESAHA.112.268680. PMC 4340704. PMID 23329793.
Jaisson S, Pietrement C, Gillery P (November 2011). "Carbamylation-derived products: bioactive compounds and potential biomarkers in chronic renal failure and atherosclerosis". Clinical Chemistry. 57 (11): 1499–505. doi:10.1373/clinchem.2011.163188. PMID 21768218.
Tan, Minjia; Peng, Chao; Anderson, Kristin A.; Chhoy, Peter; Xie, Zhongyu; Dai, Lunzhi; Park, Jeongsoon; Chen, Yue; Huang, He; Zhang, Yi; Ro, Jennifer; Wagner, Gregory R.; Green, Michelle F.; Madsen, Andreas S.; Schmiesing, Jessica; Peterson, Brett S.; Xu, Guofeng; Ilkayeva, Olga R.; Muehlbauer, Michael J.; Braulke, Thomas; Mühlhausen, Chris; Backos, Donald S.; Olsen, Christian A.; McGuire, Peter J.; Pletcher, Scott D.; Lombard, David B.; Hirschey, Matthew D.; Zhao, Yingming (April 2014). "Lysine Glutarylation Is a Protein Posttranslational Modification Regulated by SIRT5". Cell Metabolism. 19 (4): 605–617. doi:10.1016/j.cmet.2014.03.014. PMC 4108075. PMID 24703693.
Peng, Chao; Lu, Zhike; Xie, Zhongyu; Cheng, Zhongyi; Chen, Yue; Tan, Minjia; Luo, Hao; Zhang, Yi; He, Wendy; Yang, Ke; Zwaans, Bernadette M.M.; Tishkoff, Daniel; Ho, Linh; Lombard, David; He, Tong-Chuan; Dai, Junbiao; Verdin, Eric; Ye, Yang; Zhao, Yingming (December 2011). "The First Identification of Lysine Malonylation Substrates and Its Regulatory Enzyme". Molecular & Cellular Proteomics. 10 (12) M111.012658. doi:10.1074/mcp.M111.012658. PMC 3237090. PMID 21908771.
Head, PamelaSara E.; Myung, Sangho; Chen, Yong; Schneller, Jessica L.; Wang, Cindy; Duncan, Nicholas; Hoffman, Pauline; Chang, David; Gebremariam, Abigael; Gucek, Marjan; Manoli, Irini; Venditti, Charles P. (25 May 2022). "Aberrant methylmalonylation underlies methylmalonic acidemia and is attenuated by an engineered sirtuin". Science Translational Medicine. 14 (646) eabn4772. doi:10.1126/scitranslmed.abn4772. PMC 10468269. PMID 35613279.
Kang HJ, Baker EN (April 2011). "Intramolecular isopeptide bonds: protein crosslinks built for stress?". Trends in Biochemical Sciences. 36 (4): 229–37. doi:10.1016/j.tibs.2010.09.007. PMID 21055949.
Zhang, Zhihong; Tan, Minjia; Xie, Zhongyu; Dai, Lunzhi; Chen, Yue; Zhao, Yingming (January 2011). "Identification of lysine succinylation as a new post-translational modification". Nature Chemical Biology. 7 (1): 58–63. doi:10.1038/nchembio.495. PMC 3065206. PMID 21151122.
Malakhova OA, Yan M, Malakhov MP, Yuan Y, Ritchie KJ, Kim KI, Peterson LF, Shuai K, Zhang DE (February 2003). "Protein ISGylation modulates the JAK-STAT signaling pathway". Genes & Development. 17 (4): 455–60. doi:10.1101/gad.1056303. PMC 195994. PMID 12600939.
Klareskog L, Rönnelid J, Lundberg K, Padyukov L, Alfredsson L (2008). "Immunity to citrullinated proteins in rheumatoid arthritis". Annual Review of Immunology. 26: 651–75. doi:10.1146/annurev.immunol.26.021607.090244. PMID 18173373.
Brennan DF, Barford D (March 2009). "Eliminylation: a post-translational modification catalyzed by phosphothreonine lyases". Trends in Biochemical Sciences. 34 (3): 108–14. doi:10.1016/j.tibs.2008.11.005. PMID 19233656.
Rabe von Pappenheim, Fabian; Wensien, Marie; Ye, Jin; Uranga, Jon; Irisarri, Iker; de Vries, Jan; Funk, Lisa-Marie; Mata, Ricardo A.; Tittmann, Kai (April 2022). "Widespread occurrence of covalent lysine–cysteine redox switches in proteins". Nature Chemical Biology. 18 (4): 368–375. doi:10.1038/s41589-021-00966-5. PMC 8964421. PMID 35165445.
Khoury GA, Baliban RC, Floudas CA (September 2011). "Proteome-wide post-translational modification statistics: frequency analysis and curation of the swiss-prot database". Scientific Reports. 1 (90) 90. Bibcode:2011NatSR...1...90K. doi:10.1038/srep00090. PMC 3201773. PMID 22034591.
Lee TY, Huang HD, Hung JH, Huang HY, Yang YS, Wang TH (January 2006). "dbPTM: an information repository of protein post-translational modification". Nucleic Acids Research. 34 (Database issue): D622-7. doi:10.1093/nar/gkj083. PMC 1347446. PMID 16381945.
Hornbeck PV, Zhang B, Murray B, Kornhauser JM, Latham V, Skrzypek E (January 2015). "PhosphoSitePlus, 2014: mutations, PTMs and recalibrations". Nucleic Acids Research. 43 (Database issue): D512-20. doi:10.1093/nar/gku1267. PMC 4383998. PMID 25514926.
Goel R, Harsha HC, Pandey A, Prasad TS (February 2012). "Human Protein Reference Database and Human Proteinpedia as resources for phosphoproteome analysis". Molecular BioSystems. 8 (2): 453–63. doi:10.1039/c1mb05340j. PMC 3804167. PMID 22159132.
Sigrist CJ, Cerutti L, de Castro E, Langendijk-Genevaux PS, Bulliard V, Bairoch A, Hulo N (January 2010). "PROSITE, a protein domain database for functional characterization and annotation". Nucleic Acids Research. 38 (Database issue): D161-6. doi:10.1093/nar/gkp885. PMC 2808866. PMID 19858104.
Garavelli JS (January 2003). "The RESID Database of Protein Modifications: 2003 developments". Nucleic Acids Research. 31 (1): 499–501. doi:10.1093/nar/gkg038. PMC 165485. PMID 12520062.
Huang H, Arighi CN, Ross KE, Ren J, Li G, Chen SC, Wang Q, Cowart J, Vijay-Shanker K, Wu CH (January 2018). "iPTMnet: an integrated resource for protein post-translational modification network discovery". Nucleic Acids Research. 46 (1): D542 – D550. doi:10.1093/nar/gkx1104. PMC 5753337. PMID 2914561.
Audagnotto M, Dal Peraro M (2017-03-31). "In silico prediction tools and molecular modeling". Computational and Structural Biotechnology Journal. 15: 307–319. doi:10.1016/j.csbj.2017.03.004. PMC 5397102. PMID 28458782.
Wulff-Fuentes E, Berendt RR, Massman L, Danner L, Malard F, Vora J, Kahsay R, Olivier-Van Stichelen S (January 2021). "The human O-GlcNAcome database and meta-analysis". Scientific Data. 8 (1) 25. Bibcode:2021NatSD...8...25W. doi:10.1038/s41597-021-00810-4. PMC 7820439. PMID 33479245.
Malard F, Wulff-Fuentes E, Berendt RR, Didier G, Olivier-Van Stichelen S (July 2021). "Automatization and self-maintenance of the O-GlcNAcome catalog: a smart scientific database". Database (Oxford). 2021 baab039: 1. doi:10.1093/database/baab039. PMC 8288053. PMID 34279596.
Warnecke A, Sandalova T, Achour A, Harris RA (November 2014). "PyTMs: a useful PyMOL plugin for modeling common post-translational modifications". BMC Bioinformatics. 15 (1) 370. doi:10.1186/s12859-014-0370-6. PMC 4256751. PMID 25431162.
Yang Y, Peng X, Ying P, Tian J, Li J, Ke J, Zhu Y, Gong Y, Zou D, Yang N, Wang X, Mei S, Zhong R, Gong J, Chang J, Miao X (January 2019). "AWESOME: a database of SNPs that affect protein post-translational modifications". Nucleic Acids Research. 47 (D1): D874 – D880. doi:10.1093/nar/gky821. PMC 6324025. PMID 30215764.
Morris JH, Huang CC, Babbitt PC, Ferrin TE (September 2007). "structureViz: linking Cytoscape and UCSF Chimera". Bioinformatics. 23 (17): 2345–7. doi:10.1093/bioinformatics/btm329. PMID 17623706.

ncbi.nlm.nih.gov

Khoury GA, Baliban RC, Floudas CA (September 2011). "Proteome-wide post-translational modification statistics: frequency analysis and curation of the swiss-prot database". Scientific Reports. 1 90. Bibcode:2011NatSR...1...90K. doi:10.1038/srep00090. PMC 3201773. PMID 22034591.
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