Probabilistic context-free grammar (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Probabilistic context-free grammar" in English language version.

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aaai.org

Grat, L. (1995). "Automatic RNA secondary structure determination with stochastic context-free grammars" (PDF). In Rawlings, C., Clark, D., Altman, R., Hunter, L., Lengauer, T and Wodak, S. Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, AAAI Press: 136–144. Archived from the original (PDF) on 2015-12-04. Retrieved 2017-08-03.
Lefebvre, F (1995). "An optimized parsing algorithm well suited to RNA folding". In Rawlings, C.; Clark, D.; Altman, R.; Hunter, L.; Lengauer, T.; Wodak, S. (eds.). Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology (PDF). AAAI Press. pp. 222–230.
Lefebvre, F. (1996). "A grammar-based unification of several alignment and folding algorithms". In States, D. J.; Agarwal, P.; Gaasterlan, T.; Hunter, L.; Smith R. F. (eds.). Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology (PDF). AAAI Press. pp. 143–153.

archive.org

Holmes I.; Rubin G. M. (2002). Pairwise RNA Structure Comparison with Stochastic Context-Free Grammars. pp. 163–174. doi:10.1142/9789812799623_0016. ISBN 978-981-02-4777-5. PMID 11928472. {{cite book}}: |journal= ignored (help)

books.google.com

R. Durbin; S. Eddy; A. Krogh; G. Mitchinson (1998). Biological sequence analysis: probabilistic models of proteins and nucleic acids. Cambridge University Press. ISBN 978-0-521-62971-3.
Katsirelos, George; Narodytska, Nina; Walsh, Toby (2008). "The Weighted CFG Constraint". Integration of AI and OR Techniques in Constraint Programming for Combinatorial Optimization Problems. Lecture Notes in Computer Science. Vol. 5015. pp. 323–327. CiteSeerX 10.1.1.150.1187. doi:10.1007/978-3-540-68155-7_31. ISBN 978-3-540-68154-0. S2CID 9375313.

cmu.edu

cs.cmu.edu

Smith, Noah A.; Johnson, Mark (2007). "Weighted and Probabilistic Context-Free Grammars Are Equally Expressive" (PDF). Computational Linguistics. 33 (4): 477. doi:10.1162/coli.2007.33.4.477. S2CID 1405777.

doi.org

Chomsky, Noam (1956). "Three models for the description of language". IRE Transactions on Information Theory. 2 (3): 113–124. doi:10.1109/TIT.1956.1056813. S2CID 19519474.
Chomsky, Noam (June 1959). "On certain formal properties of grammars". Information and Control. 2 (2): 137–167. doi:10.1016/S0019-9958(59)90362-6.
Dowell R. & Eddy S. (2004). "Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction". BMC Bioinformatics. 5 (71): 71. doi:10.1186/1471-2105-5-71. PMC 442121. PMID 15180907.
Smith, Noah A.; Johnson, Mark (2007). "Weighted and Probabilistic Context-Free Grammars Are Equally Expressive" (PDF). Computational Linguistics. 33 (4): 477. doi:10.1162/coli.2007.33.4.477. S2CID 1405777.
Katsirelos, George; Narodytska, Nina; Walsh, Toby (2008). "The Weighted CFG Constraint". Integration of AI and OR Techniques in Constraint Programming for Combinatorial Optimization Problems. Lecture Notes in Computer Science. Vol. 5015. pp. 323–327. CiteSeerX 10.1.1.150.1187. doi:10.1007/978-3-540-68155-7_31. ISBN 978-3-540-68154-0. S2CID 9375313.
Eddy S. R. & Durbin R. (1994). "RNA sequence analysis using covariance models". Nucleic Acids Research. 22 (11): 2079–2088. doi:10.1093/nar/22.11.2079. PMC 308124. PMID 8029015.
Sakakibara Y.; Brown M.; Hughey R.; Mian I. S.; et al. (1994). "Stochastic context-free grammars for tRNA modelling". Nucleic Acids Research. 22 (23): 5112–5120. doi:10.1093/nar/22.23.5112. PMC 523785. PMID 7800507.
McCaskill J. S. (1990). "The Equilibrium Partition Function and Base Pair Binding Probabilities for RNA Secondary Structure". Biopolymers. 29 (6–7): 1105–19. doi:10.1002/bip.360290621. hdl:11858/00-001M-0000-0013-0DE3-9. PMID 1695107. S2CID 12629688.
Juan V.; Wilson C. (1999). "RNA Secondary Structure Prediction Based on Free Energy and Phylogenetic Analysis". J. Mol. Biol. 289 (4): 935–947. doi:10.1006/jmbi.1999.2801. PMID 10369773.
Zuker M (2000). "Calculating Nucleic Acid Secondary Structure". Curr. Opin. Struct. Biol. 10 (3): 303–310. doi:10.1016/S0959-440X(00)00088-9. PMID 10851192.
Mathews D. H.; Sabina J.; Zuker M.; Turner D. H. (1999). "Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure". J. Mol. Biol. 288 (5): 911–940. doi:10.1006/jmbi.1999.2700. PMID 10329189. S2CID 19989405.
B. Knudsen & J. Hein. (2003). "Pfold: RNA secondary structure prediction using stochastic context-free grammars". Nucleic Acids Research. 31 (13): 3423–3428. doi:10.1093/nar/gkg614. PMC 169020. PMID 12824339.
Knudsen B.; Hein J. (1999). "RNA Secondary Structure Prediction Using Stochastic Context-Free Grammars and Evolutionary History". Bioinformatics. 15 (6): 446–454. doi:10.1093/bioinformatics/15.6.446. PMID 10383470.
Rivas E.; Eddy S. R. (2001). "Noncoding RNA Gene Detection Using Comparative Sequence Analysis". BMC Bioinformatics. 2 (1): 8. doi:10.1186/1471-2105-2-8. PMC 64605. PMID 11801179.
Holmes I.; Rubin G. M. (2002). Pairwise RNA Structure Comparison with Stochastic Context-Free Grammars. pp. 163–174. doi:10.1142/9789812799623_0016. ISBN 978-981-02-4777-5. PMID 11928472. {{cite book}}: |journal= ignored (help)
P. P. Gardner; J. Daub; J. Tate; B. L. Moore; I. H. Osuch; S. Griffiths-Jones; R. D. Finn; E. P. Nawrocki; D. L. Kolbe; S. R. Eddy; A. Bateman. (2011). "Rfam: Wikipedia, clans and the "decimal" release". Nucleic Acids Research. 39 (Suppl 1): D141 – D145. doi:10.1093/nar/gkq1129. PMC 3013711. PMID 21062808.
Yao Z.; Weinberg Z.; Ruzzo W. L. (2006). "CMfinder-a covariance model based RNA motif finding algorithm". Bioinformatics. 22 (4): 445–452. doi:10.1093/bioinformatics/btk008. PMID 16357030.
Rabani M.; Kertesz M.; Segal E. (2008). "Computational prediction of RNA structural motifs involved in post-transcriptional regulatory processes". Proc. Natl. Acad. Sci. USA. 105 (39): 14885–14890. Bibcode:2008PNAS..10514885R. doi:10.1073/pnas.0803169105. PMC 2567462. PMID 18815376.
Goodarzi H.; Najafabadi H. S.; Oikonomou P.; Greco T. M.; Fish L.; Salavati R.; Cristea I. M.; Tavazoie S. (2012). "Systematic discovery of structural elements governing stability of mammalian messenger RNAs". Nature. 485 (7397): 264–268. Bibcode:2012Natur.485..264G. doi:10.1038/nature11013. PMC 3350620. PMID 22495308.
Giegerich R. (2000). "Explaining and Controlling Ambiguity in Dynamic Programming". Combinatorial Pattern Matching. Lecture Notes in Computer Science. Vol. 1848. In Proceedings of the 11th Annual Symposium on Combinatorial Pattern Matching 1848 Edited by: Giancarlo R., Sankoff D. Montréal, Canada: Springer-Verlag, Berlin. pp. 46–59. doi:10.1007/3-540-45123-4_6. ISBN 978-3-540-67633-1. S2CID 17088251.
Lari K.; Young S. J. (1990). "The estimation of stochastic context-free grammars using the inside-outside algorithm". Computer Speech and Language. 4: 35–56. doi:10.1016/0885-2308(90)90022-X.
Lari K.; Young S. J. (1991). "Applications of stochastic context-free grammars using the inside-outside algorithm". Computer Speech and Language. 5 (3): 237–257. doi:10.1016/0885-2308(91)90009-F.
Nawrocki E. P., Eddy S. R. (2013). "Infernal 1.1:100-fold faster RNA homology searches". Bioinformatics. 29 (22): 2933–2935. doi:10.1093/bioinformatics/btt509. PMC 3810854. PMID 24008419.
Muse S. V. (1995). "Evolutionary analyses of DNA sequences subject to constraints of secondary structure". Genetics. 139 (3): 1429–1439. doi:10.1093/genetics/139.3.1429. PMC 1206468. PMID 7768450.
Schöniger M.; von Haeseler A. (1994). "A stochastic model for the evolution of autocorrelated DNA sequences". Mol. Phylogenet. Evol. 3 (3): 240–7. Bibcode:1994MolPE...3..240S. doi:10.1006/mpev.1994.1026. PMID 7529616.
Baker, J. K. (1979). "Trainable grammars for speech recognition". The Journal of the Acoustical Society of America. 65 (S1): S132. Bibcode:1979ASAJ...65Q.132B. doi:10.1121/1.2017061.
Searls, D (2013). "Review: A primer in macromolecular linguistics". Biopolymers. 99 (3): 203–217. doi:10.1002/bip.22101. PMID 23034580. S2CID 12676925.
Krogh, A; Brown, M; Mian, I; Sjolander, K; Haussler, D (1994). "Hidden Markov models in computational biology: Applications to protein modeling". J Mol Biol. 235 (5): 1501–1531. doi:10.1006/jmbi.1994.1104. PMID 8107089. S2CID 2160404.
Sigrist, C; Cerutti, L; Hulo, N; Gattiker, A; Falquet, L; Pagni, M; Bairoch, A; Bucher, P (2002). "PROSITE: a documented database using patterns and profiles as motif descriptors". Brief Bioinform. 3 (3): 265–274. doi:10.1093/bib/3.3.265. PMID 12230035.

handle.net

hdl.handle.net

McCaskill J. S. (1990). "The Equilibrium Partition Function and Base Pair Binding Probabilities for RNA Secondary Structure". Biopolymers. 29 (6–7): 1105–19. doi:10.1002/bip.360290621. hdl:11858/00-001M-0000-0013-0DE3-9. PMID 1695107. S2CID 12629688.

harvard.edu

ui.adsabs.harvard.edu

Rabani M.; Kertesz M.; Segal E. (2008). "Computational prediction of RNA structural motifs involved in post-transcriptional regulatory processes". Proc. Natl. Acad. Sci. USA. 105 (39): 14885–14890. Bibcode:2008PNAS..10514885R. doi:10.1073/pnas.0803169105. PMC 2567462. PMID 18815376.
Goodarzi H.; Najafabadi H. S.; Oikonomou P.; Greco T. M.; Fish L.; Salavati R.; Cristea I. M.; Tavazoie S. (2012). "Systematic discovery of structural elements governing stability of mammalian messenger RNAs". Nature. 485 (7397): 264–268. Bibcode:2012Natur.485..264G. doi:10.1038/nature11013. PMC 3350620. PMID 22495308.
Schöniger M.; von Haeseler A. (1994). "A stochastic model for the evolution of autocorrelated DNA sequences". Mol. Phylogenet. Evol. 3 (3): 240–7. Bibcode:1994MolPE...3..240S. doi:10.1006/mpev.1994.1026. PMID 7529616.
Baker, J. K. (1979). "Trainable grammars for speech recognition". The Journal of the Acoustical Society of America. 65 (S1): S132. Bibcode:1979ASAJ...65Q.132B. doi:10.1121/1.2017061.

mq.edu.au

web.science.mq.edu.au

Johnson, Mark (2005). "log linear or Gibbs models" (PDF).

nih.gov

pubmed.ncbi.nlm.nih.gov

Dowell R. & Eddy S. (2004). "Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction". BMC Bioinformatics. 5 (71): 71. doi:10.1186/1471-2105-5-71. PMC 442121. PMID 15180907.
Eddy S. R. & Durbin R. (1994). "RNA sequence analysis using covariance models". Nucleic Acids Research. 22 (11): 2079–2088. doi:10.1093/nar/22.11.2079. PMC 308124. PMID 8029015.
Sakakibara Y.; Brown M.; Hughey R.; Mian I. S.; et al. (1994). "Stochastic context-free grammars for tRNA modelling". Nucleic Acids Research. 22 (23): 5112–5120. doi:10.1093/nar/22.23.5112. PMC 523785. PMID 7800507.
McCaskill J. S. (1990). "The Equilibrium Partition Function and Base Pair Binding Probabilities for RNA Secondary Structure". Biopolymers. 29 (6–7): 1105–19. doi:10.1002/bip.360290621. hdl:11858/00-001M-0000-0013-0DE3-9. PMID 1695107. S2CID 12629688.
Juan V.; Wilson C. (1999). "RNA Secondary Structure Prediction Based on Free Energy and Phylogenetic Analysis". J. Mol. Biol. 289 (4): 935–947. doi:10.1006/jmbi.1999.2801. PMID 10369773.
Zuker M (2000). "Calculating Nucleic Acid Secondary Structure". Curr. Opin. Struct. Biol. 10 (3): 303–310. doi:10.1016/S0959-440X(00)00088-9. PMID 10851192.
Mathews D. H.; Sabina J.; Zuker M.; Turner D. H. (1999). "Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure". J. Mol. Biol. 288 (5): 911–940. doi:10.1006/jmbi.1999.2700. PMID 10329189. S2CID 19989405.
B. Knudsen & J. Hein. (2003). "Pfold: RNA secondary structure prediction using stochastic context-free grammars". Nucleic Acids Research. 31 (13): 3423–3428. doi:10.1093/nar/gkg614. PMC 169020. PMID 12824339.
Knudsen B.; Hein J. (1999). "RNA Secondary Structure Prediction Using Stochastic Context-Free Grammars and Evolutionary History". Bioinformatics. 15 (6): 446–454. doi:10.1093/bioinformatics/15.6.446. PMID 10383470.
Rivas E.; Eddy S. R. (2001). "Noncoding RNA Gene Detection Using Comparative Sequence Analysis". BMC Bioinformatics. 2 (1): 8. doi:10.1186/1471-2105-2-8. PMC 64605. PMID 11801179.
Holmes I.; Rubin G. M. (2002). Pairwise RNA Structure Comparison with Stochastic Context-Free Grammars. pp. 163–174. doi:10.1142/9789812799623_0016. ISBN 978-981-02-4777-5. PMID 11928472. {{cite book}}: |journal= ignored (help)
P. P. Gardner; J. Daub; J. Tate; B. L. Moore; I. H. Osuch; S. Griffiths-Jones; R. D. Finn; E. P. Nawrocki; D. L. Kolbe; S. R. Eddy; A. Bateman. (2011). "Rfam: Wikipedia, clans and the "decimal" release". Nucleic Acids Research. 39 (Suppl 1): D141 – D145. doi:10.1093/nar/gkq1129. PMC 3013711. PMID 21062808.
Yao Z.; Weinberg Z.; Ruzzo W. L. (2006). "CMfinder-a covariance model based RNA motif finding algorithm". Bioinformatics. 22 (4): 445–452. doi:10.1093/bioinformatics/btk008. PMID 16357030.
Rabani M.; Kertesz M.; Segal E. (2008). "Computational prediction of RNA structural motifs involved in post-transcriptional regulatory processes". Proc. Natl. Acad. Sci. USA. 105 (39): 14885–14890. Bibcode:2008PNAS..10514885R. doi:10.1073/pnas.0803169105. PMC 2567462. PMID 18815376.
Goodarzi H.; Najafabadi H. S.; Oikonomou P.; Greco T. M.; Fish L.; Salavati R.; Cristea I. M.; Tavazoie S. (2012). "Systematic discovery of structural elements governing stability of mammalian messenger RNAs". Nature. 485 (7397): 264–268. Bibcode:2012Natur.485..264G. doi:10.1038/nature11013. PMC 3350620. PMID 22495308.
Nawrocki E. P., Eddy S. R. (2013). "Infernal 1.1:100-fold faster RNA homology searches". Bioinformatics. 29 (22): 2933–2935. doi:10.1093/bioinformatics/btt509. PMC 3810854. PMID 24008419.
Muse S. V. (1995). "Evolutionary analyses of DNA sequences subject to constraints of secondary structure". Genetics. 139 (3): 1429–1439. doi:10.1093/genetics/139.3.1429. PMC 1206468. PMID 7768450.
Schöniger M.; von Haeseler A. (1994). "A stochastic model for the evolution of autocorrelated DNA sequences". Mol. Phylogenet. Evol. 3 (3): 240–7. Bibcode:1994MolPE...3..240S. doi:10.1006/mpev.1994.1026. PMID 7529616.
Searls, D (2013). "Review: A primer in macromolecular linguistics". Biopolymers. 99 (3): 203–217. doi:10.1002/bip.22101. PMID 23034580. S2CID 12676925.
Krogh, A; Brown, M; Mian, I; Sjolander, K; Haussler, D (1994). "Hidden Markov models in computational biology: Applications to protein modeling". J Mol Biol. 235 (5): 1501–1531. doi:10.1006/jmbi.1994.1104. PMID 8107089. S2CID 2160404.
Sigrist, C; Cerutti, L; Hulo, N; Gattiker, A; Falquet, L; Pagni, M; Bairoch, A; Bucher, P (2002). "PROSITE: a documented database using patterns and profiles as motif descriptors". Brief Bioinform. 3 (3): 265–274. doi:10.1093/bib/3.3.265. PMID 12230035.

ncbi.nlm.nih.gov

Dowell R. & Eddy S. (2004). "Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction". BMC Bioinformatics. 5 (71): 71. doi:10.1186/1471-2105-5-71. PMC 442121. PMID 15180907.
Eddy S. R. & Durbin R. (1994). "RNA sequence analysis using covariance models". Nucleic Acids Research. 22 (11): 2079–2088. doi:10.1093/nar/22.11.2079. PMC 308124. PMID 8029015.
Sakakibara Y.; Brown M.; Hughey R.; Mian I. S.; et al. (1994). "Stochastic context-free grammars for tRNA modelling". Nucleic Acids Research. 22 (23): 5112–5120. doi:10.1093/nar/22.23.5112. PMC 523785. PMID 7800507.
B. Knudsen & J. Hein. (2003). "Pfold: RNA secondary structure prediction using stochastic context-free grammars". Nucleic Acids Research. 31 (13): 3423–3428. doi:10.1093/nar/gkg614. PMC 169020. PMID 12824339.
Rivas E.; Eddy S. R. (2001). "Noncoding RNA Gene Detection Using Comparative Sequence Analysis". BMC Bioinformatics. 2 (1): 8. doi:10.1186/1471-2105-2-8. PMC 64605. PMID 11801179.
P. P. Gardner; J. Daub; J. Tate; B. L. Moore; I. H. Osuch; S. Griffiths-Jones; R. D. Finn; E. P. Nawrocki; D. L. Kolbe; S. R. Eddy; A. Bateman. (2011). "Rfam: Wikipedia, clans and the "decimal" release". Nucleic Acids Research. 39 (Suppl 1): D141 – D145. doi:10.1093/nar/gkq1129. PMC 3013711. PMID 21062808.
Rabani M.; Kertesz M.; Segal E. (2008). "Computational prediction of RNA structural motifs involved in post-transcriptional regulatory processes". Proc. Natl. Acad. Sci. USA. 105 (39): 14885–14890. Bibcode:2008PNAS..10514885R. doi:10.1073/pnas.0803169105. PMC 2567462. PMID 18815376.
Goodarzi H.; Najafabadi H. S.; Oikonomou P.; Greco T. M.; Fish L.; Salavati R.; Cristea I. M.; Tavazoie S. (2012). "Systematic discovery of structural elements governing stability of mammalian messenger RNAs". Nature. 485 (7397): 264–268. Bibcode:2012Natur.485..264G. doi:10.1038/nature11013. PMC 3350620. PMID 22495308.
Nawrocki E. P., Eddy S. R. (2013). "Infernal 1.1:100-fold faster RNA homology searches". Bioinformatics. 29 (22): 2933–2935. doi:10.1093/bioinformatics/btt509. PMC 3810854. PMID 24008419.
Muse S. V. (1995). "Evolutionary analyses of DNA sequences subject to constraints of secondary structure". Genetics. 139 (3): 1429–1439. doi:10.1093/genetics/139.3.1429. PMC 1206468. PMID 7768450.

psu.edu

citeseerx.ist.psu.edu

Katsirelos, George; Narodytska, Nina; Walsh, Toby (2008). "The Weighted CFG Constraint". Integration of AI and OR Techniques in Constraint Programming for Combinatorial Optimization Problems. Lecture Notes in Computer Science. Vol. 5015. pp. 323–327. CiteSeerX 10.1.1.150.1187. doi:10.1007/978-3-540-68155-7_31. ISBN 978-3-540-68154-0. S2CID 9375313.

semanticscholar.org

api.semanticscholar.org

Chomsky, Noam (1956). "Three models for the description of language". IRE Transactions on Information Theory. 2 (3): 113–124. doi:10.1109/TIT.1956.1056813. S2CID 19519474.
Smith, Noah A.; Johnson, Mark (2007). "Weighted and Probabilistic Context-Free Grammars Are Equally Expressive" (PDF). Computational Linguistics. 33 (4): 477. doi:10.1162/coli.2007.33.4.477. S2CID 1405777.
Katsirelos, George; Narodytska, Nina; Walsh, Toby (2008). "The Weighted CFG Constraint". Integration of AI and OR Techniques in Constraint Programming for Combinatorial Optimization Problems. Lecture Notes in Computer Science. Vol. 5015. pp. 323–327. CiteSeerX 10.1.1.150.1187. doi:10.1007/978-3-540-68155-7_31. ISBN 978-3-540-68154-0. S2CID 9375313.
McCaskill J. S. (1990). "The Equilibrium Partition Function and Base Pair Binding Probabilities for RNA Secondary Structure". Biopolymers. 29 (6–7): 1105–19. doi:10.1002/bip.360290621. hdl:11858/00-001M-0000-0013-0DE3-9. PMID 1695107. S2CID 12629688.
Mathews D. H.; Sabina J.; Zuker M.; Turner D. H. (1999). "Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure". J. Mol. Biol. 288 (5): 911–940. doi:10.1006/jmbi.1999.2700. PMID 10329189. S2CID 19989405.
Giegerich R. (2000). "Explaining and Controlling Ambiguity in Dynamic Programming". Combinatorial Pattern Matching. Lecture Notes in Computer Science. Vol. 1848. In Proceedings of the 11th Annual Symposium on Combinatorial Pattern Matching 1848 Edited by: Giancarlo R., Sankoff D. Montréal, Canada: Springer-Verlag, Berlin. pp. 46–59. doi:10.1007/3-540-45123-4_6. ISBN 978-3-540-67633-1. S2CID 17088251.
Searls, D (2013). "Review: A primer in macromolecular linguistics". Biopolymers. 99 (3): 203–217. doi:10.1002/bip.22101. PMID 23034580. S2CID 12676925.
Krogh, A; Brown, M; Mian, I; Sjolander, K; Haussler, D (1994). "Hidden Markov models in computational biology: Applications to protein modeling". J Mol Biol. 235 (5): 1501–1531. doi:10.1006/jmbi.1994.1104. PMID 8107089. S2CID 2160404.

stanford.edu

nlp.stanford.edu

Klein, Daniel; Manning, Christopher (2003). "Accurate Unlexicalized Parsing" (PDF). Proceedings of the 41st Meeting of the Association for Computational Linguistics: 423–430.

upenn.edu

acl.ldc.upenn.edu

Chi, Zhiyi (March 1999). "Statistical properties of probabilistic context-free grammars" (PDF). Computational Linguistics. 25 (1): 131–160. Archived from the original (PDF) on 2010-08-21.

web.archive.org

Chi, Zhiyi (March 1999). "Statistical properties of probabilistic context-free grammars" (PDF). Computational Linguistics. 25 (1): 131–160. Archived from the original (PDF) on 2010-08-21.
Grat, L. (1995). "Automatic RNA secondary structure determination with stochastic context-free grammars" (PDF). In Rawlings, C., Clark, D., Altman, R., Hunter, L., Lengauer, T and Wodak, S. Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, AAAI Press: 136–144. Archived from the original (PDF) on 2015-12-04. Retrieved 2017-08-03.