Protein contact map (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Protein contact map" in English language version.

refsWebsite

Global rank English rank

17nih.gov

4^th place

13doi.org

2^nd place

6semanticscholar.org

11^th place

8^th place

3harvard.edu

18^th place

17^th place

1arxiv.org

69^th place

59^th place

arxiv.org

Weigt, M; White, RA; Szurmant, H; Hoch, JA; Hwa, T (2009). "Identification of direct residue contacts in protein–protein interaction by message passing". Proc Natl Acad Sci USA. 106 (1): 67–72. arXiv:0901.1248. Bibcode:2009PNAS..106...67W. doi:10.1073/pnas.0805923106. PMC 2629192. PMID 19116270.

doi.org

Pietal, MJ.; Bujnicki, JM.; Kozlowski, LP. (Jun 2015). "GDFuzz3D: a method for protein 3D structure reconstruction from contact maps, based on a non-Euclidean distance function". Bioinformatics. 31 (21): 3499–505. doi:10.1093/bioinformatics/btv390. PMID 26130575.
Vassura M, Margara L, Di Lena P, Medri F, Fariselli P, Casadio R (2008). "Reconstruction of 3D Structures From Protein Contact Maps". IEEE/ACM Transactions on Computational Biology and Bioinformatics. 5 (3): 357–367. doi:10.1109/TCBB.2008.27. PMID 18670040. S2CID 6080543.
Holm L, Sander C (August 1996). "Mapping the protein universe". Science. 273 (5275): 595–603. Bibcode:1996Sci...273..595H. doi:10.1126/science.273.5275.595. PMID 8662544. S2CID 7509134.
Fitch, W. M.; Markowitz, E. (1970). "An improved method for determining codon variability in a gene and its application to the rate of fixation of mutations in evolution". Biochem. Genet. 4 (5): 579–593. doi:10.1007/bf00486096. PMID 5489762. S2CID 26638948.
Kass, I.; Horovitz, A. (2002). "Mapping pathways of allosteric communication in GroEL by analysis of correlated mutations". Proteins. 48 (4): 611–617. doi:10.1002/prot.10180. PMID 12211028. S2CID 40289209.
Gobel, U.; et al. (1994). "Correlated mutations and residue contacts in proteins". Proteins. 18 (4): 309–317. doi:10.1002/prot.340180402. PMID 8208723. S2CID 14978727.
Wollenberg, K. R.; Atchley, W. R. (2000). "Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap". Proc. Natl. Acad. Sci. USA. 97 (7): 3288–3291. Bibcode:2000PNAS...97.3288W. doi:10.1073/pnas.97.7.3288. PMC 16231. PMID 10725404.
Weigt, M; White, RA; Szurmant, H; Hoch, JA; Hwa, T (2009). "Identification of direct residue contacts in protein–protein interaction by message passing". Proc Natl Acad Sci USA. 106 (1): 67–72. arXiv:0901.1248. Bibcode:2009PNAS..106...67W. doi:10.1073/pnas.0805923106. PMC 2629192. PMID 19116270.
Morcos, F; et al. (2011). "Direct-coupling analysis of residue coevolution captures native contacts across many protein families". Proc Natl Acad Sci USA. 108 (49): E1293 – E1301. doi:10.1073/pnas.1111471108. PMC 3241805. PMID 22106262.
Hanson, Jack; Paliwal, Kuldip K; Litfin, Thomas; Yang, Yuedong; Zhou, Yaoqi (2018). "Accurate Prediction of Protein Contact Maps by Coupling Residual Two-Dimensional Bidirectional Long Short-Term Memory with Convolutional Neural Networks". Bioinformatics. 34 (23): 4039–4045. doi:10.1093/bioinformatics/bty481. PMID 29931279. S2CID 49335891.
Lo A, Chiu YY, Rødland EA, Lyu PC, Sung TY, Hsu WL (2009). "Predicting helix-helix interactions from residue contacts in membrane proteins". Bioinformatics. 25 (8): 996–1003. doi:10.1093/bioinformatics/btp114. PMC 2666818. PMID 19244388.
Bikadi Z, Demko L, Hazai E (2007). "Functional and structural characterization of a protein based on analysis of its hydrogen bonding network by hydrogen bonding plot". Arch Biochem Biophys. 461 (2): 225–234. doi:10.1016/j.abb.2007.02.020. PMID 17391641.
Pérez, M. D.; Calvo, M (1995). "Interaction of beta-lactoglobulin with retinol and fatty acids and its role as a possible biological function for this protein: A review". Journal of Dairy Science. 78 (5): 978–88. doi:10.3168/jds.S0022-0302(95)76713-3. PMID 7622732.

harvard.edu

ui.adsabs.harvard.edu

Holm L, Sander C (August 1996). "Mapping the protein universe". Science. 273 (5275): 595–603. Bibcode:1996Sci...273..595H. doi:10.1126/science.273.5275.595. PMID 8662544. S2CID 7509134.
Wollenberg, K. R.; Atchley, W. R. (2000). "Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap". Proc. Natl. Acad. Sci. USA. 97 (7): 3288–3291. Bibcode:2000PNAS...97.3288W. doi:10.1073/pnas.97.7.3288. PMC 16231. PMID 10725404.
Weigt, M; White, RA; Szurmant, H; Hoch, JA; Hwa, T (2009). "Identification of direct residue contacts in protein–protein interaction by message passing". Proc Natl Acad Sci USA. 106 (1): 67–72. arXiv:0901.1248. Bibcode:2009PNAS..106...67W. doi:10.1073/pnas.0805923106. PMC 2629192. PMID 19116270.

nih.gov

pubmed.ncbi.nlm.nih.gov

Pietal, MJ.; Bujnicki, JM.; Kozlowski, LP. (Jun 2015). "GDFuzz3D: a method for protein 3D structure reconstruction from contact maps, based on a non-Euclidean distance function". Bioinformatics. 31 (21): 3499–505. doi:10.1093/bioinformatics/btv390. PMID 26130575.
Vassura M, Margara L, Di Lena P, Medri F, Fariselli P, Casadio R (2008). "Reconstruction of 3D Structures From Protein Contact Maps". IEEE/ACM Transactions on Computational Biology and Bioinformatics. 5 (3): 357–367. doi:10.1109/TCBB.2008.27. PMID 18670040. S2CID 6080543.
Holm L, Sander C (August 1996). "Mapping the protein universe". Science. 273 (5275): 595–603. Bibcode:1996Sci...273..595H. doi:10.1126/science.273.5275.595. PMID 8662544. S2CID 7509134.
Fitch, W. M.; Markowitz, E. (1970). "An improved method for determining codon variability in a gene and its application to the rate of fixation of mutations in evolution". Biochem. Genet. 4 (5): 579–593. doi:10.1007/bf00486096. PMID 5489762. S2CID 26638948.
Kass, I.; Horovitz, A. (2002). "Mapping pathways of allosteric communication in GroEL by analysis of correlated mutations". Proteins. 48 (4): 611–617. doi:10.1002/prot.10180. PMID 12211028. S2CID 40289209.
Gobel, U.; et al. (1994). "Correlated mutations and residue contacts in proteins". Proteins. 18 (4): 309–317. doi:10.1002/prot.340180402. PMID 8208723. S2CID 14978727.
Wollenberg, K. R.; Atchley, W. R. (2000). "Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap". Proc. Natl. Acad. Sci. USA. 97 (7): 3288–3291. Bibcode:2000PNAS...97.3288W. doi:10.1073/pnas.97.7.3288. PMC 16231. PMID 10725404.
Weigt, M; White, RA; Szurmant, H; Hoch, JA; Hwa, T (2009). "Identification of direct residue contacts in protein–protein interaction by message passing". Proc Natl Acad Sci USA. 106 (1): 67–72. arXiv:0901.1248. Bibcode:2009PNAS..106...67W. doi:10.1073/pnas.0805923106. PMC 2629192. PMID 19116270.
Morcos, F; et al. (2011). "Direct-coupling analysis of residue coevolution captures native contacts across many protein families". Proc Natl Acad Sci USA. 108 (49): E1293 – E1301. doi:10.1073/pnas.1111471108. PMC 3241805. PMID 22106262.
Hanson, Jack; Paliwal, Kuldip K; Litfin, Thomas; Yang, Yuedong; Zhou, Yaoqi (2018). "Accurate Prediction of Protein Contact Maps by Coupling Residual Two-Dimensional Bidirectional Long Short-Term Memory with Convolutional Neural Networks". Bioinformatics. 34 (23): 4039–4045. doi:10.1093/bioinformatics/bty481. PMID 29931279. S2CID 49335891.
Lo A, Chiu YY, Rødland EA, Lyu PC, Sung TY, Hsu WL (2009). "Predicting helix-helix interactions from residue contacts in membrane proteins". Bioinformatics. 25 (8): 996–1003. doi:10.1093/bioinformatics/btp114. PMC 2666818. PMID 19244388.
Bikadi Z, Demko L, Hazai E (2007). "Functional and structural characterization of a protein based on analysis of its hydrogen bonding network by hydrogen bonding plot". Arch Biochem Biophys. 461 (2): 225–234. doi:10.1016/j.abb.2007.02.020. PMID 17391641.
Pérez, M. D.; Calvo, M (1995). "Interaction of beta-lactoglobulin with retinol and fatty acids and its role as a possible biological function for this protein: A review". Journal of Dairy Science. 78 (5): 978–88. doi:10.3168/jds.S0022-0302(95)76713-3. PMID 7622732.

ncbi.nlm.nih.gov

Wollenberg, K. R.; Atchley, W. R. (2000). "Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap". Proc. Natl. Acad. Sci. USA. 97 (7): 3288–3291. Bibcode:2000PNAS...97.3288W. doi:10.1073/pnas.97.7.3288. PMC 16231. PMID 10725404.
Weigt, M; White, RA; Szurmant, H; Hoch, JA; Hwa, T (2009). "Identification of direct residue contacts in protein–protein interaction by message passing". Proc Natl Acad Sci USA. 106 (1): 67–72. arXiv:0901.1248. Bibcode:2009PNAS..106...67W. doi:10.1073/pnas.0805923106. PMC 2629192. PMID 19116270.
Morcos, F; et al. (2011). "Direct-coupling analysis of residue coevolution captures native contacts across many protein families". Proc Natl Acad Sci USA. 108 (49): E1293 – E1301. doi:10.1073/pnas.1111471108. PMC 3241805. PMID 22106262.
Lo A, Chiu YY, Rødland EA, Lyu PC, Sung TY, Hsu WL (2009). "Predicting helix-helix interactions from residue contacts in membrane proteins". Bioinformatics. 25 (8): 996–1003. doi:10.1093/bioinformatics/btp114. PMC 2666818. PMID 19244388.

semanticscholar.org

api.semanticscholar.org

Vassura M, Margara L, Di Lena P, Medri F, Fariselli P, Casadio R (2008). "Reconstruction of 3D Structures From Protein Contact Maps". IEEE/ACM Transactions on Computational Biology and Bioinformatics. 5 (3): 357–367. doi:10.1109/TCBB.2008.27. PMID 18670040. S2CID 6080543.
Holm L, Sander C (August 1996). "Mapping the protein universe". Science. 273 (5275): 595–603. Bibcode:1996Sci...273..595H. doi:10.1126/science.273.5275.595. PMID 8662544. S2CID 7509134.
Fitch, W. M.; Markowitz, E. (1970). "An improved method for determining codon variability in a gene and its application to the rate of fixation of mutations in evolution". Biochem. Genet. 4 (5): 579–593. doi:10.1007/bf00486096. PMID 5489762. S2CID 26638948.
Kass, I.; Horovitz, A. (2002). "Mapping pathways of allosteric communication in GroEL by analysis of correlated mutations". Proteins. 48 (4): 611–617. doi:10.1002/prot.10180. PMID 12211028. S2CID 40289209.
Gobel, U.; et al. (1994). "Correlated mutations and residue contacts in proteins". Proteins. 18 (4): 309–317. doi:10.1002/prot.340180402. PMID 8208723. S2CID 14978727.
Hanson, Jack; Paliwal, Kuldip K; Litfin, Thomas; Yang, Yuedong; Zhou, Yaoqi (2018). "Accurate Prediction of Protein Contact Maps by Coupling Residual Two-Dimensional Bidirectional Long Short-Term Memory with Convolutional Neural Networks". Bioinformatics. 34 (23): 4039–4045. doi:10.1093/bioinformatics/bty481. PMID 29931279. S2CID 49335891.