References analysis of the Wikipedia article "Protein engineering" in the English version

doi.org

Woodley, John M. (May 2022). "Integrating protein engineering into biocatalytic process scale-up". Trends in Chemistry. 4 (5): 371–373. doi:10.1016/j.trechm.2022.02.007. S2CID 247489691.

Farmer, Tylar Seiya; Bohse, Patrick; Kerr, Dianne (2017). "Rational Design Protein Engineering Through Crowdsourcing". Journal of Student Research. 6 (2): 31–38. doi:10.47611/jsr.v6i2.377. S2CID 57679002.

Poluri, Krishna Mohan; Gulati, Khushboo (2017). Protein Engineering Techniques. SpringerBriefs in Applied Sciences and Technology. Springer. doi:10.1007/978-981-10-2732-1. ISBN 978-981-10-2731-4.

Liu, Cassie J.; Cochran, Jennifer R. (2014), Cai, Weibo (ed.), "Engineering Multivalent and Multispecific Protein Therapeutics", Engineering in Translational Medicine, London: Springer, pp. 365–396, doi:10.1007/978-1-4471-4372-7_14, ISBN 978-1-4471-4372-7, retrieved 2021-12-08

Holliger, P.; Prospero, T.; Winter, G. (1993-07-15). ""Diabodies": small bivalent and bispecific antibody fragments". Proceedings of the National Academy of Sciences. 90 (14): 6444–6448. Bibcode:1993PNAS...90.6444H. doi:10.1073/pnas.90.14.6444. ISSN 0027-8424. PMC 46948. PMID 8341653.

Brinkmann, Ulrich; Kontermann, Roland E. (2017-02-17). "The making of bispecific antibodies". mAbs. 9 (2): 182–212. doi:10.1080/19420862.2016.1268307. ISSN 1942-0862. PMC 5297537. PMID 28071970.

Jäckel, Christian; Kast, Peter; Hilvert, Donald (June 2008). "Protein Design by Directed Evolution". Annual Review of Biophysics. 37 (1): 153–173. doi:10.1146/annurev.biophys.37.032807.125832. PMID 18573077.

Shivange, Amol V; Marienhagen, Jan; Mundhada, Hemanshu; Schenk, Alexander; Schwaneberg, Ulrich (2009). "Advances in generating functional diversity for directed protein evolution". Current Opinion in Chemical Biology. 13 (1): 19–25. doi:10.1016/j.cbpa.2009.01.019. PMID 19261539.

Lutz, Stefan (December 2010). "Beyond directed evolution—semi-rational protein engineering and design". Current Opinion in Biotechnology. 21 (6): 734–743. doi:10.1016/j.copbio.2010.08.011. PMC 2982887. PMID 20869867.

Sharma, Anshula; Gupta, Gaganjot; Ahmad, Tawseef; Mansoor, Sheikh; Kaur, Baljinder (2021-02-17). "Enzyme Engineering: Current Trends and Future Perspectives". Food Reviews International. 37 (2): 121–154. doi:10.1080/87559129.2019.1695835. ISSN 8755-9129. S2CID 213299369.

Kuhlman, Brian; Dantas, Gautam; Ireton, Gregory C.; Varani, Gabriele; Stoddard, Barry L. & Baker, David (2003), "Design of a Novel Globular Protein Fold with Atomic-Level Accuracy", Science, 302 (5649): 1364–1368, Bibcode:2003Sci...302.1364K, doi:10.1126/science.1089427, PMID 14631033, S2CID 1939390

Looger, Loren L.; Dwyer, Mary A.; Smith, James J. & Hellinga, Homme W. (2003), "Computational design of receptor and sensor proteins with novel functions", Nature, 423 (6936): 185–190, Bibcode:2003Natur.423..185L, doi:10.1038/nature01556, PMID 12736688, S2CID 4387641

Khoury, GA; Fazelinia, H; Chin, JW; Pantazes, RJ; Cirino, PC; Maranas, CD (October 2009), "Computational design of Candida boidinii xylose reductase for altered cofactor specificity", Protein Science, 18 (10): 2125–38, doi:10.1002/pro.227, PMC 2786976, PMID 19693930

The iterative nature of this process allows IPRO to make additive mutations to a protein sequence that collectively improve the specificity toward desired substrates and/or cofactors. Details on how to download the software, implemented in Python, and experimental testing of predictions are outlined in this paper: Khoury, GA; Fazelinia, H; Chin, JW; Pantazes, RJ; Cirino, PC; Maranas, CD (October 2009), "Computational design of Candida boidinii xylose reductase for altered cofactor specificity", Protein Science, 18 (10): 2125–38, doi:10.1002/pro.227, PMC 2786976, PMID 19693930

Ardejani, MS; Li, NX; Orner, BP (April 2011), "Stabilization of a Protein Nanocage through the Plugging of a Protein–Protein Interfacial Water Pocket", Biochemistry, 50 (19): 4029–4037, doi:10.1021/bi200207w, PMID 21488690

Chowdhury, Ratul; Ren, Tingwei; Shankla, Manish; Decker, Karl; Grisewood, Matthew; Prabhakar, Jeevan; Baker, Carol; Golbeck, John H.; Aksimentiev, Aleksei; Kumar, Manish; Maranas, Costas D. (10 September 2018). "PoreDesigner for tuning solute selectivity in a robust and highly permeable outer membrane pore". Nature Communications. 9 (1): 3661. Bibcode:2018NatCo...9.3661C. doi:10.1038/s41467-018-06097-1. PMC 6131167. PMID 30202038.

harvard.edu

ui.adsabs.harvard.edu

nature.com

nih.gov

pubmed.ncbi.nlm.nih.gov

Brinkmann, Ulrich; Kontermann, Roland E. (2017-02-17). "The making of bispecific antibodies". mAbs. 9 (2): 182–212. doi:10.1080/19420862.2016.1268307. ISSN 1942-0862. PMC 5297537. PMID 28071970.

ncbi.nlm.nih.gov

Brinkmann, Ulrich; Kontermann, Roland E. (2017-02-17). "The making of bispecific antibodies". mAbs. 9 (2): 182–212. doi:10.1080/19420862.2016.1268307. ISSN 1942-0862. PMC 5297537. PMID 28071970.

semanticscholar.org

api.semanticscholar.org

Woodley, John M. (May 2022). "Integrating protein engineering into biocatalytic process scale-up". Trends in Chemistry. 4 (5): 371–373. doi:10.1016/j.trechm.2022.02.007. S2CID 247489691.

Protein engineering (English Wikipedia)

doi.org

elsevier.com

linkinghub.elsevier.com

genengnews.com

harvard.edu

ui.adsabs.harvard.edu

jofsr.org

lsbu.ac.uk

nature.com

nih.gov

pubmed.ncbi.nlm.nih.gov

ncbi.nlm.nih.gov

sciencedaily.com

semanticscholar.org

api.semanticscholar.org

web.archive.org

worldcat.org

search.worldcat.org