Protein family (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Protein family" in English language version.

refsWebsite

Global rank English rank

24nih.gov

4^th place

16doi.org

2^nd place

11worldcat.org

5^th place

2semanticscholar.org

11^th place

8^th place

1ebi.ac.uk

5,849^th place

7,886^th place

1harvard.edu

18^th place

17^th place

1annualreviews.org

3,867^th place

3,957^th place

annualreviews.org

Orengo, Christine A.; Thornton, Janet M. (2005-06-01). "Protein Families and Their Evolution—A Structural Perspective". Annual Review of Biochemistry. 74 (1): 867–900. doi:10.1146/annurev.biochem.74.082803.133029. ISSN 0066-4154. PMID 15954844.

doi.org

Orengo, Christine; Bateman, Alex (2013). "Introduction". In Orengo, Christine; Bateman, Alex (eds.). Protein Families: Relating Protein Sequence, Structure, and Function. Hoboken, New Jersey: John Wiley & Sons, Inc. pp. vii–xi. doi:10.1002/9781118743089.fmatter. ISBN 9781118743089.
Pearson, William R. (2013). "An Introduction to Sequence Similarity ("Homology") Searching". Current Protocols in Bioinformatics. 3: 3.1.1–3.1.8. doi:10.1002/0471250953.bi0301s42. ISSN 1934-3396. PMC 3820096. PMID 23749753.
Chen, Junjie; Guo, Mingyue; Wang, Xiaolong; Liu, Bin (2018-03-01). "A comprehensive review and comparison of different computational methods for protein remote homology detection". Briefings in Bioinformatics. 19 (2): 231–244. doi:10.1093/bib/bbw108. ISSN 1477-4054. PMID 27881430.
Kunin, Victor; Cases, Ildefonso; Enright, Anton J.; de Lorenzo, Victor; Ouzounis, Christos A. (2003). "Myriads of protein families, and still counting". Genome Biology. 4 (2): 401. doi:10.1186/gb-2003-4-2-401. ISSN 1474-760X. PMC 151299. PMID 12620116.
Dayhoff, MO; McLaughlin, PJ; Barker, WC; Hunt, LT (1975). "Evolution of sequences within protein superfamilies". Die Naturwissenschaften. 62 (4): 154–161. Bibcode:1975NW.....62..154D. doi:10.1007/BF00608697. S2CID 40304076.
Orengo, Christine A.; Thornton, Janet M. (2005-06-01). "Protein Families and Their Evolution—A Structural Perspective". Annual Review of Biochemistry. 74 (1): 867–900. doi:10.1146/annurev.biochem.74.082803.133029. ISSN 0066-4154. PMID 15954844.
Veeramachaneni, Vamsi; Makałowski, Wojciech (2004). "Visualizing Sequence Similarity of Protein Families". Genome Research. 14 (6): 1160–1169. doi:10.1101/gr.2079204. ISSN 1088-9051. PMC 419794. PMID 15140831.
Holm, Liisa; Heger, Andreas (2013). "Automated Sequence-Based Approaches for Identifying Domain Families". In Orengo, Christine; Bateman, Alex (eds.). Protein Families: Relating Protein Sequence, Structure, and Function. Hoboken, New Jersey: John Wiley & Sons, Inc. pp. 1–24. doi:10.1002/9781118743089.ch1. ISBN 9781118743089. S2CID 85641264.
Wang, Yan; Zhang, Hang; Zhong, Haolin; Xue, Zhidong (2021-01-01). "Protein domain identification methods and online resources". Computational and Structural Biotechnology Journal. 19: 1145–1153. doi:10.1016/j.csbj.2021.01.041. ISSN 2001-0370. PMC 7895673. PMID 33680357.
Bateman, Alex (2013). "Sequence Classification of Protein Families: Pfam and other Resources". In Orengo, Christine; Bateman, Alex (eds.). Protein Families: Relating Protein Sequence, Structure, and Function. Hoboken, New Jersey: John Wiley & Sons, Inc. pp. 25–36. doi:10.1002/9781118743089.ch2. ISBN 9781118743089.
Mulder, Nicola J.; Apweiler, Rolf (2001-12-19). "Tools and resources for identifying protein families, domains and motifs". Genome Biology. 3 (1): reviews2001.1. doi:10.1186/gb-2001-3-1-reviews2001. ISSN 1474-760X. PMC 150457. PMID 11806833.
James, Jennifer E; Nelson, Paul G; Masel, Joanna (4 April 2023). "Differential Retention of Pfam Domains Contributes to Long-term Evolutionary Trends". Molecular Biology and Evolution. 40 (4): msad073. doi:10.1093/molbev/msad073. PMC 10089649. PMID 36947137.
Gerlt, John A.; Allen, Karen N.; Almo, Steven C.; Armstrong, Richard N.; Babbitt, Patricia C.; Cronan, John E.; Dunaway-Mariano, Debra; Imker, Heidi J.; Jacobson, Matthew P.; Minor, Wladek; Poulter, C. Dale; Raushel, Frank M.; Sali, Andrej; Shoichet, Brian K.; Sweedler, Jonathan V. (2011-11-22). "The Enzyme Function Initiative". Biochemistry. 50 (46): 9950–9962. doi:10.1021/bi201312u. ISSN 0006-2960. PMC 3238057. PMID 21999478.
Gandhimathi, A.; Nair, Anu G.; Sowdhamini, R. (2012). "PASS2 version 4: An update to the database of structure-based sequence alignments of structural domain superfamilies". Nucleic Acids Research. 40 (D1): D531 – D534. doi:10.1093/nar/gkr1096. ISSN 1362-4962. PMC 3245109. PMID 22123743.
Emms, David M.; Kelly, Steven (2015-08-06). "OrthoFinder: Solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy". Genome Biology. 16 (1): 157. doi:10.1186/s13059-015-0721-2. ISSN 1474-760X. PMC 4531804. PMID 26243257.
Emms, David M.; Kelly, Steven (2019-11-14). "OrthoFinder: Phylogenetic orthology inference for comparative genomics". Genome Biology. 20 (1): 238. doi:10.1186/s13059-019-1832-y. ISSN 1474-760X. PMC 6857279. PMID 31727128.

ebi.ac.uk

"What are protein families? Protein classification". EMBL-EBI. Retrieved 2023-11-14.

harvard.edu

ui.adsabs.harvard.edu

Dayhoff, MO; McLaughlin, PJ; Barker, WC; Hunt, LT (1975). "Evolution of sequences within protein superfamilies". Die Naturwissenschaften. 62 (4): 154–161. Bibcode:1975NW.....62..154D. doi:10.1007/BF00608697. S2CID 40304076.

nih.gov

pubmed.ncbi.nlm.nih.gov

Pearson, William R. (2013). "An Introduction to Sequence Similarity ("Homology") Searching". Current Protocols in Bioinformatics. 3: 3.1.1–3.1.8. doi:10.1002/0471250953.bi0301s42. ISSN 1934-3396. PMC 3820096. PMID 23749753.
Chen, Junjie; Guo, Mingyue; Wang, Xiaolong; Liu, Bin (2018-03-01). "A comprehensive review and comparison of different computational methods for protein remote homology detection". Briefings in Bioinformatics. 19 (2): 231–244. doi:10.1093/bib/bbw108. ISSN 1477-4054. PMID 27881430.
Kunin, Victor; Cases, Ildefonso; Enright, Anton J.; de Lorenzo, Victor; Ouzounis, Christos A. (2003). "Myriads of protein families, and still counting". Genome Biology. 4 (2): 401. doi:10.1186/gb-2003-4-2-401. ISSN 1474-760X. PMC 151299. PMID 12620116.
Dayhoff, MO (December 1974). "Computer analysis of protein sequences". Federation Proceedings. 33 (12): 2314–6. PMID 4435228.
Dayhoff, MO (August 1976). "The origin and evolution of protein superfamilies". Federation Proceedings. 35 (10): 2132–8. PMID 181273.
Orengo, Christine A.; Thornton, Janet M. (2005-06-01). "Protein Families and Their Evolution—A Structural Perspective". Annual Review of Biochemistry. 74 (1): 867–900. doi:10.1146/annurev.biochem.74.082803.133029. ISSN 0066-4154. PMID 15954844.
Veeramachaneni, Vamsi; Makałowski, Wojciech (2004). "Visualizing Sequence Similarity of Protein Families". Genome Research. 14 (6): 1160–1169. doi:10.1101/gr.2079204. ISSN 1088-9051. PMC 419794. PMID 15140831.
Wang, Yan; Zhang, Hang; Zhong, Haolin; Xue, Zhidong (2021-01-01). "Protein domain identification methods and online resources". Computational and Structural Biotechnology Journal. 19: 1145–1153. doi:10.1016/j.csbj.2021.01.041. ISSN 2001-0370. PMC 7895673. PMID 33680357.
Mulder, Nicola J.; Apweiler, Rolf (2001-12-19). "Tools and resources for identifying protein families, domains and motifs". Genome Biology. 3 (1): reviews2001.1. doi:10.1186/gb-2001-3-1-reviews2001. ISSN 1474-760X. PMC 150457. PMID 11806833.
James, Jennifer E; Nelson, Paul G; Masel, Joanna (4 April 2023). "Differential Retention of Pfam Domains Contributes to Long-term Evolutionary Trends". Molecular Biology and Evolution. 40 (4): msad073. doi:10.1093/molbev/msad073. PMC 10089649. PMID 36947137.
Gerlt, John A.; Allen, Karen N.; Almo, Steven C.; Armstrong, Richard N.; Babbitt, Patricia C.; Cronan, John E.; Dunaway-Mariano, Debra; Imker, Heidi J.; Jacobson, Matthew P.; Minor, Wladek; Poulter, C. Dale; Raushel, Frank M.; Sali, Andrej; Shoichet, Brian K.; Sweedler, Jonathan V. (2011-11-22). "The Enzyme Function Initiative". Biochemistry. 50 (46): 9950–9962. doi:10.1021/bi201312u. ISSN 0006-2960. PMC 3238057. PMID 21999478.
Gandhimathi, A.; Nair, Anu G.; Sowdhamini, R. (2012). "PASS2 version 4: An update to the database of structure-based sequence alignments of structural domain superfamilies". Nucleic Acids Research. 40 (D1): D531 – D534. doi:10.1093/nar/gkr1096. ISSN 1362-4962. PMC 3245109. PMID 22123743.
Emms, David M.; Kelly, Steven (2015-08-06). "OrthoFinder: Solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy". Genome Biology. 16 (1): 157. doi:10.1186/s13059-015-0721-2. ISSN 1474-760X. PMC 4531804. PMID 26243257.
Emms, David M.; Kelly, Steven (2019-11-14). "OrthoFinder: Phylogenetic orthology inference for comparative genomics". Genome Biology. 20 (1): 238. doi:10.1186/s13059-019-1832-y. ISSN 1474-760X. PMC 6857279. PMID 31727128.

ncbi.nlm.nih.gov

Pearson, William R. (2013). "An Introduction to Sequence Similarity ("Homology") Searching". Current Protocols in Bioinformatics. 3: 3.1.1–3.1.8. doi:10.1002/0471250953.bi0301s42. ISSN 1934-3396. PMC 3820096. PMID 23749753.
Kunin, Victor; Cases, Ildefonso; Enright, Anton J.; de Lorenzo, Victor; Ouzounis, Christos A. (2003). "Myriads of protein families, and still counting". Genome Biology. 4 (2): 401. doi:10.1186/gb-2003-4-2-401. ISSN 1474-760X. PMC 151299. PMID 12620116.
Veeramachaneni, Vamsi; Makałowski, Wojciech (2004). "Visualizing Sequence Similarity of Protein Families". Genome Research. 14 (6): 1160–1169. doi:10.1101/gr.2079204. ISSN 1088-9051. PMC 419794. PMID 15140831.
Wang, Yan; Zhang, Hang; Zhong, Haolin; Xue, Zhidong (2021-01-01). "Protein domain identification methods and online resources". Computational and Structural Biotechnology Journal. 19: 1145–1153. doi:10.1016/j.csbj.2021.01.041. ISSN 2001-0370. PMC 7895673. PMID 33680357.
Mulder, Nicola J.; Apweiler, Rolf (2001-12-19). "Tools and resources for identifying protein families, domains and motifs". Genome Biology. 3 (1): reviews2001.1. doi:10.1186/gb-2001-3-1-reviews2001. ISSN 1474-760X. PMC 150457. PMID 11806833.
James, Jennifer E; Nelson, Paul G; Masel, Joanna (4 April 2023). "Differential Retention of Pfam Domains Contributes to Long-term Evolutionary Trends". Molecular Biology and Evolution. 40 (4): msad073. doi:10.1093/molbev/msad073. PMC 10089649. PMID 36947137.
Gerlt, John A.; Allen, Karen N.; Almo, Steven C.; Armstrong, Richard N.; Babbitt, Patricia C.; Cronan, John E.; Dunaway-Mariano, Debra; Imker, Heidi J.; Jacobson, Matthew P.; Minor, Wladek; Poulter, C. Dale; Raushel, Frank M.; Sali, Andrej; Shoichet, Brian K.; Sweedler, Jonathan V. (2011-11-22). "The Enzyme Function Initiative". Biochemistry. 50 (46): 9950–9962. doi:10.1021/bi201312u. ISSN 0006-2960. PMC 3238057. PMID 21999478.
Gandhimathi, A.; Nair, Anu G.; Sowdhamini, R. (2012). "PASS2 version 4: An update to the database of structure-based sequence alignments of structural domain superfamilies". Nucleic Acids Research. 40 (D1): D531 – D534. doi:10.1093/nar/gkr1096. ISSN 1362-4962. PMC 3245109. PMID 22123743.
Emms, David M.; Kelly, Steven (2015-08-06). "OrthoFinder: Solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy". Genome Biology. 16 (1): 157. doi:10.1186/s13059-015-0721-2. ISSN 1474-760X. PMC 4531804. PMID 26243257.
Emms, David M.; Kelly, Steven (2019-11-14). "OrthoFinder: Phylogenetic orthology inference for comparative genomics". Genome Biology. 20 (1): 238. doi:10.1186/s13059-019-1832-y. ISSN 1474-760X. PMC 6857279. PMID 31727128.

semanticscholar.org

api.semanticscholar.org

Dayhoff, MO; McLaughlin, PJ; Barker, WC; Hunt, LT (1975). "Evolution of sequences within protein superfamilies". Die Naturwissenschaften. 62 (4): 154–161. Bibcode:1975NW.....62..154D. doi:10.1007/BF00608697. S2CID 40304076.
Holm, Liisa; Heger, Andreas (2013). "Automated Sequence-Based Approaches for Identifying Domain Families". In Orengo, Christine; Bateman, Alex (eds.). Protein Families: Relating Protein Sequence, Structure, and Function. Hoboken, New Jersey: John Wiley & Sons, Inc. pp. 1–24. doi:10.1002/9781118743089.ch1. ISBN 9781118743089. S2CID 85641264.

worldcat.org

search.worldcat.org

Pearson, William R. (2013). "An Introduction to Sequence Similarity ("Homology") Searching". Current Protocols in Bioinformatics. 3: 3.1.1–3.1.8. doi:10.1002/0471250953.bi0301s42. ISSN 1934-3396. PMC 3820096. PMID 23749753.
Chen, Junjie; Guo, Mingyue; Wang, Xiaolong; Liu, Bin (2018-03-01). "A comprehensive review and comparison of different computational methods for protein remote homology detection". Briefings in Bioinformatics. 19 (2): 231–244. doi:10.1093/bib/bbw108. ISSN 1477-4054. PMID 27881430.
Kunin, Victor; Cases, Ildefonso; Enright, Anton J.; de Lorenzo, Victor; Ouzounis, Christos A. (2003). "Myriads of protein families, and still counting". Genome Biology. 4 (2): 401. doi:10.1186/gb-2003-4-2-401. ISSN 1474-760X. PMC 151299. PMID 12620116.
Orengo, Christine A.; Thornton, Janet M. (2005-06-01). "Protein Families and Their Evolution—A Structural Perspective". Annual Review of Biochemistry. 74 (1): 867–900. doi:10.1146/annurev.biochem.74.082803.133029. ISSN 0066-4154. PMID 15954844.
Veeramachaneni, Vamsi; Makałowski, Wojciech (2004). "Visualizing Sequence Similarity of Protein Families". Genome Research. 14 (6): 1160–1169. doi:10.1101/gr.2079204. ISSN 1088-9051. PMC 419794. PMID 15140831.
Wang, Yan; Zhang, Hang; Zhong, Haolin; Xue, Zhidong (2021-01-01). "Protein domain identification methods and online resources". Computational and Structural Biotechnology Journal. 19: 1145–1153. doi:10.1016/j.csbj.2021.01.041. ISSN 2001-0370. PMC 7895673. PMID 33680357.
Mulder, Nicola J.; Apweiler, Rolf (2001-12-19). "Tools and resources for identifying protein families, domains and motifs". Genome Biology. 3 (1): reviews2001.1. doi:10.1186/gb-2001-3-1-reviews2001. ISSN 1474-760X. PMC 150457. PMID 11806833.
Gerlt, John A.; Allen, Karen N.; Almo, Steven C.; Armstrong, Richard N.; Babbitt, Patricia C.; Cronan, John E.; Dunaway-Mariano, Debra; Imker, Heidi J.; Jacobson, Matthew P.; Minor, Wladek; Poulter, C. Dale; Raushel, Frank M.; Sali, Andrej; Shoichet, Brian K.; Sweedler, Jonathan V. (2011-11-22). "The Enzyme Function Initiative". Biochemistry. 50 (46): 9950–9962. doi:10.1021/bi201312u. ISSN 0006-2960. PMC 3238057. PMID 21999478.
Gandhimathi, A.; Nair, Anu G.; Sowdhamini, R. (2012). "PASS2 version 4: An update to the database of structure-based sequence alignments of structural domain superfamilies". Nucleic Acids Research. 40 (D1): D531 – D534. doi:10.1093/nar/gkr1096. ISSN 1362-4962. PMC 3245109. PMID 22123743.
Emms, David M.; Kelly, Steven (2015-08-06). "OrthoFinder: Solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy". Genome Biology. 16 (1): 157. doi:10.1186/s13059-015-0721-2. ISSN 1474-760X. PMC 4531804. PMID 26243257.
Emms, David M.; Kelly, Steven (2019-11-14). "OrthoFinder: Phylogenetic orthology inference for comparative genomics". Genome Biology. 20 (1): 238. doi:10.1186/s13059-019-1832-y. ISSN 1474-760X. PMC 6857279. PMID 31727128.