Protein mass spectrometry (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Protein mass spectrometry" in English language version.

refsWebsite

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42nih.gov

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33doi.org

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10harvard.edu

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9worldcat.org

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2nature.com

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1zenodo.org

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1handle.net

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1books.google.com

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1nobelprize.org

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1psu.edu

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1semanticscholar.org

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1arxiv.org

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arxiv.org

Slavov, Nikolai (2021-02-01). "Single-cell protein analysis by mass spectrometry". Current Opinion in Chemical Biology. 60: 1–9. arXiv:2004.02069. doi:10.1016/j.cbpa.2020.04.018. ISSN 1367-5931. PMC 7767890. PMID 32599342.

books.google.com

Birendra N. Pramanik; A.K. Ganguly; Michael L. Gross (28 February 2002). Applied Electrospray Mass Spectrometry: Practical Spectroscopy Series. CRC Press. pp. 4–. ISBN 978-0-8247-4419-9.

doi.org

Jürgen Cox; Matthias Mann (July 2011). "Quantitative, High-Resolution Proteomics for Data-Driven Systems Biology". Annual Review of Biochemistry. 80: 273–299. doi:10.1146/annurev-biochem-061308-093216. PMID 21548781. – via Annual Reviews (subscription required)
Nelson P. Barrera; Carol V. Robinson (July 2011). "Advances in the Mass Spectrometry of Membrane Proteins: From Individual Proteins to Intact Complexes". Annual Review of Biochemistry. 80: 247–71. doi:10.1146/annurev-biochem-062309-093307. hdl:10533/135572. PMID 21548785. – via Annual Reviews (subscription required)
Karas, M.; Bachmann, D.; Hillenkamp, F. (1985). "Influence of the Wavelength in High-Irradiance Ultraviolet Laser Desorption Mass Spectrometry of Organic Molecules". Analytical Chemistry. 57 (14): 2935–9. doi:10.1021/ac00291a042.
Karas, M.; Bachmann, D.; Bahr, U.; Hillenkamp, F. (1987). "Matrix-Assisted Ultraviolet Laser Desorption of Non-Volatile Compounds". International Journal of Mass Spectrometry and Ion Processes. 78: 53–68. Bibcode:1987IJMSI..78...53K. doi:10.1016/0168-1176(87)87041-6.
Dole M, Mack LL, Hines RL, Mobley RC, Ferguson LD, Alice MB (1968). "Molecular Beams of Macroions". Journal of Chemical Physics. 49 (5): 2240–2249. Bibcode:1968JChPh..49.2240D. doi:10.1063/1.1670391.
Chait, Brian T. (2011). "Mass Spectrometry in the Postgenomic Era". Annu Rev Biochem. 80: 239–46. doi:10.1146/annurev-biochem-110810-095744. PMID 21675917. – via Annual Reviews (subscription required)
Trauger, A. Sunia; W. Webb; G. Siuzdak (2002). "Peptide and protein analysis with mass spectrometry". Spectroscopy. 16 (1): 15–28. doi:10.1155/2002/320152.
W. Wells, G. Wang & S. J. Baek (2006). "Comparative Study of Three Proteomic Quantitative Methods, DIGE, cICAT, and iTRAQ, Using 2D Gel- or LC−MALDI TOF/TOF". Journal of Proteome Research. 5 (3): 651–658. CiteSeerX 10.1.1.156.5802. doi:10.1021/pr050405o. PMID 16512681.
Issaq, J. Haleem & T. D. Veenstra (2008). "Two-dimensional polyacrylamide gel electrophoresis (2D-PAGE): advances and perspectives". BioTechniques. 46 (5): 697–700. doi:10.2144/000112823. PMID 18474047.
Bret, Cooper and J. Feng and W. Garrett (2010). "Relative, Label-free Protein Quantitation: Spectral Counting Error Statistics from Nine Replicate MudPIT Samples". Spectroscopy. 21 (9): 1534–1546. doi:10.1016/j.jasms.2010.05.001. PMID 20541435.
Augustin, Scalbert and L. Brennan and O. Fiehn (2009). "Mass-spectrometry-based metabolomics: limitations and recommendations for future progress with particular focus on nutrition research". Metabolomics. 5 (4): 435–458. doi:10.1007/s11306-009-0168-0. PMC 2794347. PMID 20046865.
P. Hernandez, M. Müller & R. D. Appel (2006). "Automated protein identification by tandem mass spectrometry: Issues and strategies". Mass Spectrometry Reviews. 25 (2): 235–254. Bibcode:2006MSRv...25..235H. doi:10.1002/mas.20068. PMID 16284939.
Bouzid R, de Beijer MT, Luijten RJ, Bezstarosti K, Kessler AL, Bruno MJ, Peppelenbosch MP, Demmers JA, Buschow SI (May 2021). "Empirical Evaluation of the Use of Computational HLA Binding as an Early Filter to the Mass Spectrometry-Based Epitope Discovery Workflow". Cancers. 13 (10): 2307. doi:10.3390/cancers13102307. PMC 8150281. PMID 34065814.
Cravatt, Benjamin F.; Simon, Gabriel M.; Yates Iii, John R. (December 2007). "The biological impact of mass-spectrometry-based proteomics". Nature. 450 (7172): 991–1000. Bibcode:2007Natur.450..991C. doi:10.1038/nature06525. ISSN 1476-4687. PMID 18075578. S2CID 205211923.
Slavov, Nikolai (2021-02-01). "Single-cell protein analysis by mass spectrometry". Current Opinion in Chemical Biology. 60: 1–9. arXiv:2004.02069. doi:10.1016/j.cbpa.2020.04.018. ISSN 1367-5931. PMC 7767890. PMID 32599342.
Slavov, Nikolai (2020-01-31). "Unpicking the proteome in single cells". Science. 367 (6477): 512–513. Bibcode:2020Sci...367..512S. doi:10.1126/science.aaz6695. ISSN 0036-8075. PMC 7029782. PMID 32001644.
Huffman, R. Gray; Leduc, Andrew; Wichmann, Christoph; Di Gioia, Marco; Borriello, Francesco; Specht, Harrison; Derks, Jason; Khan, Saad; Khoury, Luke; Emmott, Edward; Petelski, Aleksandra A.; Perlman, David H.; Cox, Jürgen; Zanoni, Ivan; Slavov, Nikolai (May 2023). "Prioritized mass spectrometry increases the depth, sensitivity and data completeness of single-cell proteomics". Nature Methods. 20 (5): 714–722. doi:10.1038/s41592-023-01830-1. ISSN 1548-7091. PMC 10172113. PMID 37012480.
MacCoss, Michael J.; Alfaro, Javier Antonio; Faivre, Danielle A.; Wu, Christine C.; Wanunu, Meni; Slavov, Nikolai (March 2023). "Sampling the proteome by emerging single-molecule and mass spectrometry methods". Nature Methods. 20 (3): 339–346. doi:10.1038/s41592-023-01802-5. ISSN 1548-7105. PMC 10044470. PMID 36899164.
Slavov, Nikolai (January 2022). "Counting protein molecules for single-cell proteomics". Cell. 185 (2): 232–234. doi:10.1016/j.cell.2021.12.013. PMC 8855622. PMID 35063071.
Derks, Jason; Slavov, Nikolai (2023-03-03). "Strategies for Increasing the Depth and Throughput of Protein Analysis by plexDIA". Journal of Proteome Research. 22 (3): 697–705. doi:10.1021/acs.jproteome.2c00721. ISSN 1535-3893. PMC 9992289. PMID 36735898.
Slavov, Nikolai (January 2022). "Scaling Up Single-Cell Proteomics". Molecular & Cellular Proteomics. 21 (1): 100179. doi:10.1016/j.mcpro.2021.100179. PMC 8683604. PMID 34808355.
"Framework for multiplicative scaling of single-cell proteomics". Nature Biotechnology. 41 (1): 23–24. January 2023. doi:10.1038/s41587-022-01411-1. ISSN 1087-0156. PMID 35851377.
Snijders AP, de Vos MG, Wright PC (2005). "Novel approach for peptide quantitation and sequencing based on 15N and 13C metabolic labeling". J. Proteome Res. 4 (2): 578–85. doi:10.1021/pr0497733. PMID 15822937.
M. Miyagi & K. C. S. Rao (2007). "Proteolytic ¹⁸O-labeling strategies for quantitative proteomics". Mass Spectrometry Reviews. 26 (1): 121–136. Bibcode:2007MSRv...26..121M. doi:10.1002/mas.20116. PMID 17086517.
Derks, Jason; Leduc, Andrew; Wallmann, Georg; Huffman, R. Gray; Willetts, Matthew; Khan, Saad; Specht, Harrison; Ralser, Markus; Demichev, Vadim; Slavov, Nikolai (January 2023). "Increasing the throughput of sensitive proteomics by plexDIA". Nature Biotechnology. 41 (1): 50–59. doi:10.1038/s41587-022-01389-w. ISSN 1087-0156. PMC 9839897. PMID 35835881.
Haqqani AS, Kelly JF, Stanimirovic DB (2008). "Quantitative protein profiling by mass spectrometry using label-free proteomics". Genomics Protocols. Methods in Molecular Biology. Vol. 439. pp. 241–56. doi:10.1007/978-1-59745-188-8_17. ISBN 978-1-58829-871-3. PMID 18370108.
Z. Zhang; D. L. Smith (1994). "Probing noncovalent structural features of proteins by mass spectrometry". Mass Spectrometry Reviews. 13 (5–6): 411–429. Bibcode:1994MSRv...13..411S. doi:10.1002/mas.1280130503.
Susa, Anna C.; Xia, Zijie; Tang, Henry Y. H.; Tainer, John A.; Williams, Evan R. (2017-02-01). "Charging of Proteins in Native Mass Spectrometry". Journal of the American Society for Mass Spectrometry. 28 (2): 332–340. Bibcode:2017JASMS..28..332S. doi:10.1007/s13361-016-1517-7. ISSN 1044-0305. PMC 5283922. PMID 27734326.
T. E. Wales & J. R. Engen (2006). "Hydrogen exchange mass spectrometry for the analysis of protein dynamics". Mass Spectrometry Reviews. 25 (1): 158–170. Bibcode:2006MSRv...25..158W. doi:10.1002/mas.20064. PMID 16208684.
R.E. Iacob & J. R. Engen (2012). "Hydrogen Exchange Mass Spectrometry: Are We Out of the Quicksand?". Mass Spectrometry Reviews. 23 (6): 1003–1010. Bibcode:2012JASMS..23.1003I. doi:10.1007/s13361-012-0377-z. PMC 3389995. PMID 22476891.
B. B. Stocks & L. Konermann (2009). "Structural Characterization of Short-Lived Protein Unfolding Intermediates by Laser-Induced Oxidative Labeling and Mass Spectrometry". Anal. Chem. 81 (1): 20–27. doi:10.1021/ac801888h. PMID 19055350.
Gupta N.; Tanner S.; Jaitly N.; Adkins J.N.; Lipton M.; Edwards R.; Romine M.; Osterman A.; Bafna V.; Smith R.D.; et al. (2007). "Whole proteome analysis of post-translational modifications: Applications of mass-spectrometry for proteogenomic annotation". Genome Res. 17 (9): 1362–1377. doi:10.1101/gr.6427907. PMC 1950905. PMID 17690205.
Gupta N.; Benhamida J.; Bhargava V.; Goodman D.; Kain E.; Kerman I.; Nguyen N.; Ollikainen N.; Rodriguez J.; Wang J.; et al. (2008). "Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes". Genome Res. 18 (7): 1133–1142. doi:10.1101/gr.074344.107. PMC 2493402. PMID 18426904.

handle.net

hdl.handle.net

Nelson P. Barrera; Carol V. Robinson (July 2011). "Advances in the Mass Spectrometry of Membrane Proteins: From Individual Proteins to Intact Complexes". Annual Review of Biochemistry. 80: 247–71. doi:10.1146/annurev-biochem-062309-093307. hdl:10533/135572. PMID 21548785. – via Annual Reviews (subscription required)

harvard.edu

ui.adsabs.harvard.edu

Karas, M.; Bachmann, D.; Bahr, U.; Hillenkamp, F. (1987). "Matrix-Assisted Ultraviolet Laser Desorption of Non-Volatile Compounds". International Journal of Mass Spectrometry and Ion Processes. 78: 53–68. Bibcode:1987IJMSI..78...53K. doi:10.1016/0168-1176(87)87041-6.
Dole M, Mack LL, Hines RL, Mobley RC, Ferguson LD, Alice MB (1968). "Molecular Beams of Macroions". Journal of Chemical Physics. 49 (5): 2240–2249. Bibcode:1968JChPh..49.2240D. doi:10.1063/1.1670391.
P. Hernandez, M. Müller & R. D. Appel (2006). "Automated protein identification by tandem mass spectrometry: Issues and strategies". Mass Spectrometry Reviews. 25 (2): 235–254. Bibcode:2006MSRv...25..235H. doi:10.1002/mas.20068. PMID 16284939.
Cravatt, Benjamin F.; Simon, Gabriel M.; Yates Iii, John R. (December 2007). "The biological impact of mass-spectrometry-based proteomics". Nature. 450 (7172): 991–1000. Bibcode:2007Natur.450..991C. doi:10.1038/nature06525. ISSN 1476-4687. PMID 18075578. S2CID 205211923.
Slavov, Nikolai (2020-01-31). "Unpicking the proteome in single cells". Science. 367 (6477): 512–513. Bibcode:2020Sci...367..512S. doi:10.1126/science.aaz6695. ISSN 0036-8075. PMC 7029782. PMID 32001644.
M. Miyagi & K. C. S. Rao (2007). "Proteolytic ¹⁸O-labeling strategies for quantitative proteomics". Mass Spectrometry Reviews. 26 (1): 121–136. Bibcode:2007MSRv...26..121M. doi:10.1002/mas.20116. PMID 17086517.
Z. Zhang; D. L. Smith (1994). "Probing noncovalent structural features of proteins by mass spectrometry". Mass Spectrometry Reviews. 13 (5–6): 411–429. Bibcode:1994MSRv...13..411S. doi:10.1002/mas.1280130503.
Susa, Anna C.; Xia, Zijie; Tang, Henry Y. H.; Tainer, John A.; Williams, Evan R. (2017-02-01). "Charging of Proteins in Native Mass Spectrometry". Journal of the American Society for Mass Spectrometry. 28 (2): 332–340. Bibcode:2017JASMS..28..332S. doi:10.1007/s13361-016-1517-7. ISSN 1044-0305. PMC 5283922. PMID 27734326.
T. E. Wales & J. R. Engen (2006). "Hydrogen exchange mass spectrometry for the analysis of protein dynamics". Mass Spectrometry Reviews. 25 (1): 158–170. Bibcode:2006MSRv...25..158W. doi:10.1002/mas.20064. PMID 16208684.
R.E. Iacob & J. R. Engen (2012). "Hydrogen Exchange Mass Spectrometry: Are We Out of the Quicksand?". Mass Spectrometry Reviews. 23 (6): 1003–1010. Bibcode:2012JASMS..23.1003I. doi:10.1007/s13361-012-0377-z. PMC 3389995. PMID 22476891.

nature.com

Cravatt, Benjamin F.; Simon, Gabriel M.; Yates Iii, John R. (December 2007). "The biological impact of mass-spectrometry-based proteomics". Nature. 450 (7172): 991–1000. Bibcode:2007Natur.450..991C. doi:10.1038/nature06525. ISSN 1476-4687. PMID 18075578. S2CID 205211923.
"Framework for multiplicative scaling of single-cell proteomics". Nature Biotechnology. 41 (1): 23–24. January 2023. doi:10.1038/s41587-022-01411-1. ISSN 1087-0156. PMID 35851377.

nih.gov

pubmed.ncbi.nlm.nih.gov

Jürgen Cox; Matthias Mann (July 2011). "Quantitative, High-Resolution Proteomics for Data-Driven Systems Biology". Annual Review of Biochemistry. 80: 273–299. doi:10.1146/annurev-biochem-061308-093216. PMID 21548781. – via Annual Reviews (subscription required)
Nelson P. Barrera; Carol V. Robinson (July 2011). "Advances in the Mass Spectrometry of Membrane Proteins: From Individual Proteins to Intact Complexes". Annual Review of Biochemistry. 80: 247–71. doi:10.1146/annurev-biochem-062309-093307. hdl:10533/135572. PMID 21548785. – via Annual Reviews (subscription required)
Chait, Brian T. (2011). "Mass Spectrometry in the Postgenomic Era". Annu Rev Biochem. 80: 239–46. doi:10.1146/annurev-biochem-110810-095744. PMID 21675917. – via Annual Reviews (subscription required)
W. Wells, G. Wang & S. J. Baek (2006). "Comparative Study of Three Proteomic Quantitative Methods, DIGE, cICAT, and iTRAQ, Using 2D Gel- or LC−MALDI TOF/TOF". Journal of Proteome Research. 5 (3): 651–658. CiteSeerX 10.1.1.156.5802. doi:10.1021/pr050405o. PMID 16512681.
Issaq, J. Haleem & T. D. Veenstra (2008). "Two-dimensional polyacrylamide gel electrophoresis (2D-PAGE): advances and perspectives". BioTechniques. 46 (5): 697–700. doi:10.2144/000112823. PMID 18474047.
Bret, Cooper and J. Feng and W. Garrett (2010). "Relative, Label-free Protein Quantitation: Spectral Counting Error Statistics from Nine Replicate MudPIT Samples". Spectroscopy. 21 (9): 1534–1546. doi:10.1016/j.jasms.2010.05.001. PMID 20541435.
Augustin, Scalbert and L. Brennan and O. Fiehn (2009). "Mass-spectrometry-based metabolomics: limitations and recommendations for future progress with particular focus on nutrition research". Metabolomics. 5 (4): 435–458. doi:10.1007/s11306-009-0168-0. PMC 2794347. PMID 20046865.
P. Hernandez, M. Müller & R. D. Appel (2006). "Automated protein identification by tandem mass spectrometry: Issues and strategies". Mass Spectrometry Reviews. 25 (2): 235–254. Bibcode:2006MSRv...25..235H. doi:10.1002/mas.20068. PMID 16284939.
Bouzid R, de Beijer MT, Luijten RJ, Bezstarosti K, Kessler AL, Bruno MJ, Peppelenbosch MP, Demmers JA, Buschow SI (May 2021). "Empirical Evaluation of the Use of Computational HLA Binding as an Early Filter to the Mass Spectrometry-Based Epitope Discovery Workflow". Cancers. 13 (10): 2307. doi:10.3390/cancers13102307. PMC 8150281. PMID 34065814.
Cravatt, Benjamin F.; Simon, Gabriel M.; Yates Iii, John R. (December 2007). "The biological impact of mass-spectrometry-based proteomics". Nature. 450 (7172): 991–1000. Bibcode:2007Natur.450..991C. doi:10.1038/nature06525. ISSN 1476-4687. PMID 18075578. S2CID 205211923.
Slavov, Nikolai (2021-02-01). "Single-cell protein analysis by mass spectrometry". Current Opinion in Chemical Biology. 60: 1–9. arXiv:2004.02069. doi:10.1016/j.cbpa.2020.04.018. ISSN 1367-5931. PMC 7767890. PMID 32599342.
Slavov, Nikolai (2020-01-31). "Unpicking the proteome in single cells". Science. 367 (6477): 512–513. Bibcode:2020Sci...367..512S. doi:10.1126/science.aaz6695. ISSN 0036-8075. PMC 7029782. PMID 32001644.
Huffman, R. Gray; Leduc, Andrew; Wichmann, Christoph; Di Gioia, Marco; Borriello, Francesco; Specht, Harrison; Derks, Jason; Khan, Saad; Khoury, Luke; Emmott, Edward; Petelski, Aleksandra A.; Perlman, David H.; Cox, Jürgen; Zanoni, Ivan; Slavov, Nikolai (May 2023). "Prioritized mass spectrometry increases the depth, sensitivity and data completeness of single-cell proteomics". Nature Methods. 20 (5): 714–722. doi:10.1038/s41592-023-01830-1. ISSN 1548-7091. PMC 10172113. PMID 37012480.
MacCoss, Michael J.; Alfaro, Javier Antonio; Faivre, Danielle A.; Wu, Christine C.; Wanunu, Meni; Slavov, Nikolai (March 2023). "Sampling the proteome by emerging single-molecule and mass spectrometry methods". Nature Methods. 20 (3): 339–346. doi:10.1038/s41592-023-01802-5. ISSN 1548-7105. PMC 10044470. PMID 36899164.
Slavov, Nikolai (January 2022). "Counting protein molecules for single-cell proteomics". Cell. 185 (2): 232–234. doi:10.1016/j.cell.2021.12.013. PMC 8855622. PMID 35063071.
Derks, Jason; Slavov, Nikolai (2023-03-03). "Strategies for Increasing the Depth and Throughput of Protein Analysis by plexDIA". Journal of Proteome Research. 22 (3): 697–705. doi:10.1021/acs.jproteome.2c00721. ISSN 1535-3893. PMC 9992289. PMID 36735898.
Slavov, Nikolai (January 2022). "Scaling Up Single-Cell Proteomics". Molecular & Cellular Proteomics. 21 (1): 100179. doi:10.1016/j.mcpro.2021.100179. PMC 8683604. PMID 34808355.
"Framework for multiplicative scaling of single-cell proteomics". Nature Biotechnology. 41 (1): 23–24. January 2023. doi:10.1038/s41587-022-01411-1. ISSN 1087-0156. PMID 35851377.
Snijders AP, de Vos MG, Wright PC (2005). "Novel approach for peptide quantitation and sequencing based on 15N and 13C metabolic labeling". J. Proteome Res. 4 (2): 578–85. doi:10.1021/pr0497733. PMID 15822937.
M. Miyagi & K. C. S. Rao (2007). "Proteolytic ¹⁸O-labeling strategies for quantitative proteomics". Mass Spectrometry Reviews. 26 (1): 121–136. Bibcode:2007MSRv...26..121M. doi:10.1002/mas.20116. PMID 17086517.
Derks, Jason; Leduc, Andrew; Wallmann, Georg; Huffman, R. Gray; Willetts, Matthew; Khan, Saad; Specht, Harrison; Ralser, Markus; Demichev, Vadim; Slavov, Nikolai (January 2023). "Increasing the throughput of sensitive proteomics by plexDIA". Nature Biotechnology. 41 (1): 50–59. doi:10.1038/s41587-022-01389-w. ISSN 1087-0156. PMC 9839897. PMID 35835881.
Haqqani AS, Kelly JF, Stanimirovic DB (2008). "Quantitative protein profiling by mass spectrometry using label-free proteomics". Genomics Protocols. Methods in Molecular Biology. Vol. 439. pp. 241–56. doi:10.1007/978-1-59745-188-8_17. ISBN 978-1-58829-871-3. PMID 18370108.
Susa, Anna C.; Xia, Zijie; Tang, Henry Y. H.; Tainer, John A.; Williams, Evan R. (2017-02-01). "Charging of Proteins in Native Mass Spectrometry". Journal of the American Society for Mass Spectrometry. 28 (2): 332–340. Bibcode:2017JASMS..28..332S. doi:10.1007/s13361-016-1517-7. ISSN 1044-0305. PMC 5283922. PMID 27734326.
T. E. Wales & J. R. Engen (2006). "Hydrogen exchange mass spectrometry for the analysis of protein dynamics". Mass Spectrometry Reviews. 25 (1): 158–170. Bibcode:2006MSRv...25..158W. doi:10.1002/mas.20064. PMID 16208684.
R.E. Iacob & J. R. Engen (2012). "Hydrogen Exchange Mass Spectrometry: Are We Out of the Quicksand?". Mass Spectrometry Reviews. 23 (6): 1003–1010. Bibcode:2012JASMS..23.1003I. doi:10.1007/s13361-012-0377-z. PMC 3389995. PMID 22476891.
B. B. Stocks & L. Konermann (2009). "Structural Characterization of Short-Lived Protein Unfolding Intermediates by Laser-Induced Oxidative Labeling and Mass Spectrometry". Anal. Chem. 81 (1): 20–27. doi:10.1021/ac801888h. PMID 19055350.
Gupta N.; Tanner S.; Jaitly N.; Adkins J.N.; Lipton M.; Edwards R.; Romine M.; Osterman A.; Bafna V.; Smith R.D.; et al. (2007). "Whole proteome analysis of post-translational modifications: Applications of mass-spectrometry for proteogenomic annotation". Genome Res. 17 (9): 1362–1377. doi:10.1101/gr.6427907. PMC 1950905. PMID 17690205.
Gupta N.; Benhamida J.; Bhargava V.; Goodman D.; Kain E.; Kerman I.; Nguyen N.; Ollikainen N.; Rodriguez J.; Wang J.; et al. (2008). "Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes". Genome Res. 18 (7): 1133–1142. doi:10.1101/gr.074344.107. PMC 2493402. PMID 18426904.

ncbi.nlm.nih.gov

Augustin, Scalbert and L. Brennan and O. Fiehn (2009). "Mass-spectrometry-based metabolomics: limitations and recommendations for future progress with particular focus on nutrition research". Metabolomics. 5 (4): 435–458. doi:10.1007/s11306-009-0168-0. PMC 2794347. PMID 20046865.
Bouzid R, de Beijer MT, Luijten RJ, Bezstarosti K, Kessler AL, Bruno MJ, Peppelenbosch MP, Demmers JA, Buschow SI (May 2021). "Empirical Evaluation of the Use of Computational HLA Binding as an Early Filter to the Mass Spectrometry-Based Epitope Discovery Workflow". Cancers. 13 (10): 2307. doi:10.3390/cancers13102307. PMC 8150281. PMID 34065814.
Slavov, Nikolai (2021-02-01). "Single-cell protein analysis by mass spectrometry". Current Opinion in Chemical Biology. 60: 1–9. arXiv:2004.02069. doi:10.1016/j.cbpa.2020.04.018. ISSN 1367-5931. PMC 7767890. PMID 32599342.
Slavov, Nikolai (2020-01-31). "Unpicking the proteome in single cells". Science. 367 (6477): 512–513. Bibcode:2020Sci...367..512S. doi:10.1126/science.aaz6695. ISSN 0036-8075. PMC 7029782. PMID 32001644.
Huffman, R. Gray; Leduc, Andrew; Wichmann, Christoph; Di Gioia, Marco; Borriello, Francesco; Specht, Harrison; Derks, Jason; Khan, Saad; Khoury, Luke; Emmott, Edward; Petelski, Aleksandra A.; Perlman, David H.; Cox, Jürgen; Zanoni, Ivan; Slavov, Nikolai (May 2023). "Prioritized mass spectrometry increases the depth, sensitivity and data completeness of single-cell proteomics". Nature Methods. 20 (5): 714–722. doi:10.1038/s41592-023-01830-1. ISSN 1548-7091. PMC 10172113. PMID 37012480.
MacCoss, Michael J.; Alfaro, Javier Antonio; Faivre, Danielle A.; Wu, Christine C.; Wanunu, Meni; Slavov, Nikolai (March 2023). "Sampling the proteome by emerging single-molecule and mass spectrometry methods". Nature Methods. 20 (3): 339–346. doi:10.1038/s41592-023-01802-5. ISSN 1548-7105. PMC 10044470. PMID 36899164.
Slavov, Nikolai (January 2022). "Counting protein molecules for single-cell proteomics". Cell. 185 (2): 232–234. doi:10.1016/j.cell.2021.12.013. PMC 8855622. PMID 35063071.
Derks, Jason; Slavov, Nikolai (2023-03-03). "Strategies for Increasing the Depth and Throughput of Protein Analysis by plexDIA". Journal of Proteome Research. 22 (3): 697–705. doi:10.1021/acs.jproteome.2c00721. ISSN 1535-3893. PMC 9992289. PMID 36735898.
Slavov, Nikolai (January 2022). "Scaling Up Single-Cell Proteomics". Molecular & Cellular Proteomics. 21 (1): 100179. doi:10.1016/j.mcpro.2021.100179. PMC 8683604. PMID 34808355.
Derks, Jason; Leduc, Andrew; Wallmann, Georg; Huffman, R. Gray; Willetts, Matthew; Khan, Saad; Specht, Harrison; Ralser, Markus; Demichev, Vadim; Slavov, Nikolai (January 2023). "Increasing the throughput of sensitive proteomics by plexDIA". Nature Biotechnology. 41 (1): 50–59. doi:10.1038/s41587-022-01389-w. ISSN 1087-0156. PMC 9839897. PMID 35835881.
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