Protein–protein interaction (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Protein–protein interaction" in English language version.

refsWebsite

Global rank English rank

116nih.gov

4^th place

80doi.org

2^nd place

14semanticscholar.org

11^th place

8^th place

12harvard.edu

18^th place

17^th place

2arxiv.org

69^th place

59^th place

2archive.org

6^th place

2psu.edu

207^th place

136^th place

2zenodo.org

621^st place

380^th place

1oup.com

485^th place

440^th place

1ebi.ac.uk

5,849^th place

7,886^th place

1usal.es

6,439^th place

low place

1string-db.org

low place

1sciencedirect.com

149^th place

178^th place

archive.org (Global: 6^th place; English: 6^th place)

Cooper GM (2000). The cell: a molecular approach (2nd ed.). Washington DC: ASM Press. ISBN 978-0-87893-106-4.^{[page needed]}
Alberts B, Johnson A, Lewis J, Raff M, Roberts K, Walter P (2002). Molecular biology of the cell (4th ed.). New York: Garland Science. ISBN 978-0-8153-3218-3.^{[page needed]}

arxiv.org (Global: 69^th place; English: 59^th place)

Mashaghi AR, Ramezanpour A, Karimipour V (2004). "Investigation of a protein complex network". The European Physical Journal B. 41 (1): 113–121. arXiv:cond-mat/0304207. Bibcode:2004EPJB...41..113M. doi:10.1140/epjb/e2004-00301-0. S2CID 9233932.
De Domenico M, Nicosia V, Arenas A, Latora V (April 2015). "Structural reducibility of multilayer networks". Nature Communications. 6 6864. arXiv:1405.0425. Bibcode:2015NatCo...6.6864D. doi:10.1038/ncomms7864. PMID 25904309. S2CID 16776349.

doi.org (Global: 2^nd place; English: 2^nd place)

Titeca K, Lemmens I, Tavernier J, Eyckerman S (January 2019). "Discovering cellular protein-protein interactions: Technological strategies and opportunities". Mass Spectrometry Reviews. 38 (1): 79–111. doi:10.1002/mas.21574. PMID 29957823.
Herce HD, Deng W, Helma J, Leonhardt H, Cardoso MC (2013). "Visualization and targeted disruption of protein interactions in living cells". Nature Communications. 4 2660. Bibcode:2013NatCo...4.2660H. doi:10.1038/ncomms3660. PMC 3826628. PMID 24154492.
Isa NF, Bensaude O, Murphy S (February 2022). "Amber Suppression Technology for Mapping Site-specific Viral-host Protein Interactions in Mammalian Cells". Bio-Protocol. 12 (3) e4315. doi:10.21769/bioprotoc.4315. PMC 8855090. PMID 35284605.
Mashaghi AR, Ramezanpour A, Karimipour V (2004). "Investigation of a protein complex network". The European Physical Journal B. 41 (1): 113–121. arXiv:cond-mat/0304207. Bibcode:2004EPJB...41..113M. doi:10.1140/epjb/e2004-00301-0. S2CID 9233932.
Hanukoglu I (1996). "Electron transfer proteins of cytochrome P450 systems". In Bittar EE, Jefcoate CR (eds.). Physiological Functions of Cytochrome P450 in Relation to Structure and Regulation. Advances in Molecular and Cell Biology. Vol. 14. JAI Press, Inc. pp. 29–55. doi:10.1016/S1569-2558(08)60339-2. ISBN 978-0-7623-0113-3.
Brandt ME, Vickery LE (August 1993). "Charge pair interactions stabilizing ferredoxin-ferredoxin reductase complexes. Identification by complementary site-specific mutations". The Journal of Biological Chemistry. 268 (23): 17126–17130. doi:10.1016/S0021-9258(19)85311-5. PMID 8349601.
Hanukoglu I (December 2017). "Conservation of the Enzyme-Coenzyme Interfaces in FAD and NADP Binding Adrenodoxin Reductase-A Ubiquitous Enzyme". Journal of Molecular Evolution. 85 (5–6): 205–218. Bibcode:2017JMolE..85..205H. doi:10.1007/s00239-017-9821-9. PMID 29177972. S2CID 7120148.
Jones S, Thornton JM (January 1996). "Principles of protein-protein interactions". Proceedings of the National Academy of Sciences of the United States of America. 93 (1): 13–20. Bibcode:1996PNAS...93...13J. doi:10.1073/pnas.93.1.13. PMC 40170. PMID 8552589.
Qin K, Sethi PR, Lambert NA (August 2008). "Abundance and stability of complexes containing inactive G protein-coupled receptors and G proteins". FASEB Journal. 22 (8): 2920–2927. doi:10.1096/fj.08-105775. PMC 2493464. PMID 18434433.
Qin K, Dong C, Wu G, Lambert NA (August 2011). "Inactive-state preassembly of G(q)-coupled receptors and G(q) heterotrimers". Nature Chemical Biology. 7 (10): 740–747. doi:10.1038/nchembio.642. PMC 3177959. PMID 21873996.
Malhis N, Gsponer J (June 2015). "Computational identification of MoRFs in protein sequences". Bioinformatics. 31 (11): 1738–1744. doi:10.1093/bioinformatics/btv060. PMC 4443681. PMID 25637562.
Westermarck J, Ivaska J, Corthals GL (July 2013). "Identification of protein interactions involved in cellular signaling". Molecular & Cellular Proteomics. 12 (7): 1752–1763. doi:10.1074/mcp.R113.027771. PMC 3708163. PMID 23481661.
Janin J (December 1999). "Wet and dry interfaces: the role of solvent in protein-protein and protein-DNA recognition". Structure. 7 (12): R277 – R279. doi:10.1016/s0969-2126(00)88333-1. PMID 10647173.
Barillari C, Taylor J, Viner R, Essex JW (March 2007). "Classification of water molecules in protein binding sites". Journal of the American Chemical Society. 129 (9): 2577–2587. doi:10.1021/ja066980q. PMID 17288418.
Lisova O, Belkadi L, Bedouelle H (April 2014). "Direct and indirect interactions in the recognition between a cross-neutralizing antibody and the four serotypes of dengue virus". Journal of Molecular Recognition. 27 (4): 205–214. doi:10.1002/jmr.2352. PMID 24591178. S2CID 5416842.
England P, Brégégère F, Bedouelle H (January 1997). "Energetic and kinetic contributions of contact residues of antibody D1.3 in the interaction with lysozyme". Biochemistry. 36 (1): 164–172. CiteSeerX 10.1.1.613.413. doi:10.1021/bi961419y. PMID 8993330.
Janin J, Chothia C (September 1990). "The structure of protein-protein recognition sites". The Journal of Biological Chemistry. 265 (27): 16027–16030. doi:10.1016/S0021-9258(17)46181-3. PMID 2204619.
Kendrew JC, Bodo G, Dintzis HM, Parrish RG, Wyckoff H, Phillips DC (March 1958). "A three-dimensional model of the myoglobin molecule obtained by x-ray analysis". Nature. 181 (4610): 662–666. Bibcode:1958Natur.181..662K. doi:10.1038/181662a0. PMID 13517261. S2CID 4162786.
Cooper DR, Porebski PJ, Chruszcz M, Minor W (August 2011). "X-ray crystallography: Assessment and validation of protein-small molecule complexes for drug discovery". Expert Opinion on Drug Discovery. 6 (8): 771–782. doi:10.1517/17460441.2011.585154. PMC 3138648. PMID 21779303.
Wand AJ, Englander SW (August 1996). "Protein complexes studied by NMR spectroscopy". Current Opinion in Biotechnology. 7 (4): 403–408. doi:10.1016/s0958-1669(96)80115-7. PMC 3442359. PMID 8768898.
Vinogradova O, Qin J (2012). "NMR as a unique tool in assessment and complex determination of weak protein–protein interactions". In Zhu G (ed.). NMR of Proteins and Small Biomolecules. Topics in Current Chemistry. Vol. 326. Springer Berlin. pp. 35–45. doi:10.1007/128_2011_216. ISBN 978-3-642-28916-3. PMC 3676910. PMID 21809187.
Berridge MJ (2012). "Cell Signalling Biology: Module 6 – Spatial and Temporal Aspects of Signalling". Biochemical Journal. 6 csb0001006. doi:10.1042/csb0001006 (inactive 12 July 2025).{{cite journal}}: CS1 maint: DOI inactive as of July 2025 (link)
Yan C, Wu F, Jernigan RL, Dobbs D, Honavar V (January 2008). "Characterization of protein-protein interfaces". The Protein Journal. 27 (1): 59–70. doi:10.1007/s10930-007-9108-x. PMC 2566606. PMID 17851740.
Jones S, Thornton JM (September 1997). "Analysis of protein-protein interaction sites using surface patches". Journal of Molecular Biology. 272 (1): 121–132. doi:10.1006/jmbi.1997.1234. PMID 9299342.
Chothia C, Janin J (August 1975). "Principles of protein-protein recognition". Nature. 256 (5520): 705–708. Bibcode:1975Natur.256..705C. doi:10.1038/256705a0. PMID 1153006. S2CID 4292325.
Phizicky EM, Fields S (March 1995). "Protein-protein interactions: methods for detection and analysis". Microbiological Reviews. 59 (1): 94–123. doi:10.1128/MMBR.59.1.94-123.1995. PMC 239356. PMID 7708014.
Pagel P, Kovac S, Oesterheld M, Brauner B, Dunger-Kaltenbach I, Frishman G, et al. (March 2005). "The MIPS mammalian protein-protein interaction database". Bioinformatics. 21 (6): 832–834. doi:10.1093/bioinformatics/bti115. PMID 15531608. Retrieved 2 January 2021.
Terentiev AA, Moldogazieva NT, Shaitan KV (December 2009). "Dynamic proteomics in modeling of the living cell. Protein-protein interactions". Biochemistry. Biokhimiia. 74 (13): 1586–1607. doi:10.1134/s0006297909130112. PMID 20210711. S2CID 19815231.
Wodak SJ, Vlasblom J, Turinsky AL, Pu S (December 2013). "Protein-protein interaction networks: the puzzling riches". Current Opinion in Structural Biology. 23 (6): 941–953. doi:10.1016/j.sbi.2013.08.002. PMID 24007795.
Banerjee S, Velásquez-Zapata V, Fuerst G, Elmore JM, Wise RP (July 2021). "NGPINT: a next-generation protein-protein interaction software". Briefings in Bioinformatics. 22 (4). doi:10.1093/bib/bbaa351. PMID 33367498.
Velásquez-Zapata V, Elmore JM, Banerjee S, Dorman KS, Wise RP (April 2021). "Next-generation yeast-two-hybrid analysis with Y2H-SCORES identifies novel interactors of the MLA immune receptor". PLOS Computational Biology. 17 (4) e1008890. Bibcode:2021PLSCB..17E8890V. doi:10.1371/journal.pcbi.1008890. PMC 8046355. PMID 33798202.
Rajagopala SV, Sikorski P, Caufield JH, Tovchigrechko A, Uetz P (December 2012). "Studying protein complexes by the yeast two-hybrid system". Methods. 58 (4): 392–399. doi:10.1016/j.ymeth.2012.07.015. PMC 3517932. PMID 22841565.
Stelzl U, Wanker EE (December 2006). "The value of high quality protein-protein interaction networks for systems biology". Current Opinion in Chemical Biology. 10 (6): 551–558. doi:10.1016/j.cbpa.2006.10.005. PMID 17055769.
Petschnigg J, Snider J, Stagljar I (February 2011). "Interactive proteomics research technologies: recent applications and advances". Current Opinion in Biotechnology. 22 (1): 50–58. doi:10.1016/j.copbio.2010.09.001. PMID 20884196.
Venkatesan K, Rual JF, Vazquez A, Stelzl U, Lemmens I, Hirozane-Kishikawa T, et al. (January 2009). "An empirical framework for binary interactome mapping". Nature Methods. 6 (1): 83–90. doi:10.1038/nmeth.1280. PMC 2872561. PMID 19060904.
Battesti A, Bouveret E (December 2012). "The bacterial two-hybrid system based on adenylate cyclase reconstitution in Escherichia coli". Methods. 58 (4): 325–334. doi:10.1016/j.ymeth.2012.07.018. PMID 22841567.
Brettner LM, Masel J (September 2012). "Protein stickiness, rather than number of functional protein-protein interactions, predicts expression noise and plasticity in yeast". BMC Systems Biology. 6: 128. doi:10.1186/1752-0509-6-128. PMC 3527306. PMID 23017156.
Ramachandran N, Hainsworth E, Bhullar B, Eisenstein S, Rosen B, Lau AY, et al. (July 2004). "Self-assembling protein microarrays". Science. 305 (5680): 86–90. Bibcode:2004Sci...305...86R. doi:10.1126/science.1097639. PMID 15232106. S2CID 20936301.
Ramachandran N, Raphael JV, Hainsworth E, Demirkan G, Fuentes MG, Rolfs A, et al. (June 2008). "Next-generation high-density self-assembling functional protein arrays". Nature Methods. 5 (6): 535–538. doi:10.1038/nmeth.1210. PMC 3070491. PMID 18469824.
Bernstein H, Edgar RS, Denhardt GH (June 1965). "Intragenic Complementation among Temperature Sensitive Mutants of Bacteriophage T4D". Genetics. 51 (6): 987–1002. doi:10.1093/genetics/51.6.987. PMC 1210828. PMID 14337770.
Smallwood S, Cevik B, Moyer SA (December 2002). "Intragenic complementation and oligomerization of the L subunit of the sendai virus RNA polymerase". Virology. 304 (2): 235–45. doi:10.1006/viro.2002.1720. PMID 12504565.
Rodríguez-Pombo P, Pérez-Cerdá C, Pérez B, Desviat LR, Sánchez-Pulido L, Ugarte M (June 2005). "Towards a model to explain the intragenic complementation in the heteromultimeric protein propionyl-CoA carboxylase". Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease. 1740 (3): 489–98. doi:10.1016/j.bbadis.2004.10.009. PMID 15949719.
Crick FH, Orgel LE (January 1964). "The theory of inter-allelic complementation". Journal of Molecular Biology. 8: 161–5. doi:10.1016/s0022-2836(64)80156-x. PMID 14149958.
Bertolini M, Fenzl K, Kats I, Wruck F, Tippmann F, Schmitt J, et al. (January 2021). "Interactions between nascent proteins translated by adjacent ribosomes drive homomer assembly". Science. 371 (6524): 57–64. doi:10.1126/science.abc7151. PMC 7613021. PMID 33384371.
Jehle H (September 1963). "Intermolecular forces and biological specificity". Proceedings of the National Academy of Sciences of the United States of America. 50 (3): 516–24. doi:10.1073/pnas.50.3.516. PMC 221211. PMID 16578546.
Marcotte EM, Pellegrini M, Ng HL, Rice DW, Yeates TO, Eisenberg D (July 1999). "Detecting protein function and protein-protein interactions from genome sequences". Science. 285 (5428): 751–753. CiteSeerX 10.1.1.535.9650. doi:10.1126/science.285.5428.751. PMID 10427000.
Raman K (February 2010). "Construction and analysis of protein-protein interaction networks". Automated Experimentation. 2 (1): 2. doi:10.1186/1759-4499-2-2. PMC 2834675. PMID 20334628.
Badal VD, Kundrotas PJ, Vakser IA (December 2015). "Text Mining for Protein Docking". PLOS Computational Biology. 11 (12) e1004630. Bibcode:2015PLSCB..11E4630B. doi:10.1371/journal.pcbi.1004630. PMC 4674139. PMID 26650466.
Papanikolaou N, Pavlopoulos GA, Theodosiou T, Iliopoulos I (March 2015). "Protein-protein interaction predictions using text mining methods". Methods. Text mining of biomedical literature. 74: 47–53. doi:10.1016/j.ymeth.2014.10.026. PMID 25448298.
Kotlyar M, Rossos AE, Jurisica I (December 2017). "Prediction of Protein-Protein Interactions". Current Protocols in Bioinformatics. 60 (1): 8.2.1–8.2.14. doi:10.1002/cpbi.38. PMID 29220074. S2CID 19509320.
Ding Z, Kihara D (August 2018). "Computational Methods for Predicting Protein-Protein Interactions Using Various Protein Features". Current Protocols in Protein Science. 93 (1) e62. doi:10.1002/cpps.62. PMC 6097941. PMID 29927082.
Sarkar D, Saha S (September 2019). "Machine-learning techniques for the prediction of protein-protein interactions". Journal of Biosciences. 44 (4) 104. doi:10.1007/s12038-019-9909-z. PMID 31502581. S2CID 199668359.
Miller JP, Lo RS, Ben-Hur A, Desmarais C, Stagljar I, Noble WS, et al. (August 2005). "Large-scale identification of yeast integral membrane protein interactions". Proceedings of the National Academy of Sciences of the United States of America. 102 (34): 12123–12128. Bibcode:2005PNAS..10212123M. doi:10.1073/pnas.0505482102. PMC 1189342. PMID 16093310.
Lalonde S, Sero A, Pratelli R, Pilot G, Chen J, Sardi MI, et al. (2010). "A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2". Frontiers in Physiology. 1: 24. doi:10.3389/fphys.2010.00024. PMC 3059934. PMID 21423366.
Qi Y, Bar-Joseph Z, Klein-Seetharaman J (May 2006). "Evaluation of different biological data and computational classification methods for use in protein interaction prediction". Proteins. 63 (3): 490–500. doi:10.1002/prot.20865. PMC 3250929. PMID 16450363.
Qi Y, Dhiman HK, Bhola N, Budyak I, Kar S, Man D, et al. (December 2009). "Systematic prediction of human membrane receptor interactions". Proteomics. 9 (23): 5243–5255. doi:10.1002/pmic.200900259. PMC 3076061. PMID 19798668.
Ganapathiraju MK, Thahir M, Handen A, Sarkar SN, Sweet RA, Nimgaonkar VL, et al. (April 2016). "Schizophrenia interactome with 504 novel protein-protein interactions". npj Schizophrenia. 2 16012. doi:10.1038/npjschz.2016.12. PMC 4898894. PMID 27336055.
Poot Velez AH, Fontove F, Del Rio G (July 2020). "Protein-Protein Interactions Efficiently Modeled by Residue Cluster Classes". International Journal of Molecular Sciences. 21 (13): 4787. doi:10.3390/ijms21134787. PMC 7370293. PMID 32640745.
Corral-Corral R, Chavez E, Del Rio G (December 2015). "Machine Learnable Fold Space Representation based on Residue Cluster Classes". Computational Biology and Chemistry. 59 Pt A: 1–7. doi:10.1016/j.compbiolchem.2015.07.010. PMID 26366526.
Xenarios I, Rice DW, Salwinski L, Baron MK, Marcotte EM, Eisenberg D (January 2000). "DIP: the database of interacting proteins". Nucleic Acids Research. 28 (1): 289–291. doi:10.1093/nar/28.1.289. PMC 102387. PMID 10592249.
McDowall MD, Scott MS, Barton GJ (January 2009). "PIPs: human protein-protein interaction prediction database". Nucleic Acids Research. 37 (Database issue): D651 – D656. doi:10.1093/nar/gkn870. PMC 2686497. PMID 18988626.
Sprinzak E, Sattath S, Margalit H (April 2003). "How reliable are experimental protein-protein interaction data?". Journal of Molecular Biology. 327 (5): 919–923. doi:10.1016/S0022-2836(03)00239-0. PMID 12662919. Retrieved 2 January 2021.
Schwikowski B, Uetz P, Fields S (December 2000). "A network of protein-protein interactions in yeast". Nature Biotechnology. 18 (12): 1257–1261. doi:10.1038/82360. PMID 11101803. S2CID 3009359.
Rigaut G, Shevchenko A, Rutz B, Wilm M, Mann M, Séraphin B (October 1999). "A generic protein purification method for protein complex characterization and proteome exploration". Nature Biotechnology. 17 (10): 1030–1032. doi:10.1038/13732. PMID 10504710. S2CID 663553.
Kohl M, Wiese S, Warscheid B (2011). "Cytoscape: Software for Visualization and Analysis of Biological Networks". Data Mining in Proteomics. Methods in Molecular Biology. Vol. 696. pp. 291–303. doi:10.1007/978-1-60761-987-1_18. ISBN 978-1-60761-986-4. PMID 21063955.
Ideker T, Ozier O, Schwikowski B, Siegel AF (1 January 2002). "Discovering regulatory and signalling circuits in molecular interaction networks". Bioinformatics. 18 (Suppl 1): S233 – S240. doi:10.1093/bioinformatics/18.suppl_1.s233. PMID 12169552.
Ayati M, Erten S, Chance MR, Koyutürk M (December 2015). "MOBAS: identification of disease-associated protein subnetworks using modularity-based scoring". EURASIP Journal on Bioinformatics & Systems Biology. 2015 (1) 7. doi:10.1186/s13637-015-0025-6. PMC 5270451. PMID 28194175.
De Domenico M, Nicosia V, Arenas A, Latora V (April 2015). "Structural reducibility of multilayer networks". Nature Communications. 6 6864. arXiv:1405.0425. Bibcode:2015NatCo...6.6864D. doi:10.1038/ncomms7864. PMID 25904309. S2CID 16776349.
Fischer B, Sandmann T, Horn T, Billmann M, Chaudhary V, Huber W, et al. (March 2015). "A map of directional genetic interactions in a metazoan cell". eLife. 4. doi:10.7554/eLife.05464. PMC 4384530. PMID 25748138.
Vinayagam A, Zirin J, Roesel C, Hu Y, Yilmazel B, Samsonova AA, et al. (January 2014). "Integrating protein-protein interaction networks with phenotypes reveals signs of interactions". Nature Methods. 11 (1): 94–99. doi:10.1038/nmeth.2733. PMC 3877743. PMID 24240319.
Chen GI, Gingras AC (July 2007). "Affinity-purification mass spectrometry (AP-MS) of serine/threonine phosphatases". Methods. 42 (3): 298–305. doi:10.1016/j.ymeth.2007.02.018. PMID 17532517.
Laraia L, McKenzie G, Spring DR, Venkitaraman AR, Huggins DJ (June 2015). "Overcoming Chemical, Biological, and Computational Challenges in the Development of Inhibitors Targeting Protein-Protein Interactions". Chemistry & Biology. 22 (6): 689–703. doi:10.1016/j.chembiol.2015.04.019. PMC 4518475. PMID 26091166.
Arkin MR, Wells JA (April 2004). "Small-molecule inhibitors of protein-protein interactions: progressing towards the dream". Nature Reviews. Drug Discovery. 3 (4): 301–317. doi:10.1038/nrd1343. PMC 4179228. PMID 15060526. S2CID 13879559.
Chen J, Sawyer N, Regan L (April 2013). "Protein-protein interactions: general trends in the relationship between binding affinity and interfacial buried surface area". Protein Science. 22 (4): 510–515. doi:10.1002/pro.2230. PMC 3610057. PMID 23389845.
Jaiswal A, Lakshmi PT (9 September 2014). "Molecular inhibition of telomerase recruitment using designer peptides: an in silico approach". Journal of Biomolecular Structure & Dynamics. 33 (7): 1442–1459. doi:10.1080/07391102.2014.953207. PMID 25204447. S2CID 27293727.
Jaiswal A (2014). "AtTRB1–3 Mediates Structural Changes in AtPOT1b to Hold ssDNA". ISRN Structural Biology. 2014: 1–16. doi:10.1155/2014/827201.
Jiang Z, Kuo YH, Zhong M, Zhang J, Zhou XX, Xing L, et al. (July 2022). "Adaptor-Specific Antibody Fragment Inhibitors for the Intracellular Modulation of p97 (VCP) Protein-Protein Interactions". Journal of the American Chemical Society. 144 (29): 13218–13225. doi:10.1021/jacs.2c03665. PMC 9335864. PMID 35819848.
Soini L, Leysen S, Davis J, Ottmann C (August 2022). "Molecular glues to stabilise protein-protein interactions". Current Opinion in Chemical Biology. 69 102169. doi:10.1016/j.cbpa.2022.102169. PMID 35749929.
Ivanov AA, Khuri FR, Fu H (July 2013). "Targeting protein-protein interactions as an anticancer strategy". Trends in Pharmacological Sciences. 34 (7): 393–400. doi:10.1016/j.tips.2013.04.007. PMC 3773978. PMID 23725674.
Hargreaves D, Carbajo RJ, Bodnarchuk MS, Embrey K, Rawlins PB, Packer M, et al. (May 2023). "Design of rigid protein-protein interaction inhibitors enables targeting of undruggable Mcl-1". Proceedings of the National Academy of Sciences of the United States of America. 120 (21) e2221967120. Bibcode:2023PNAS..12021967H. doi:10.1073/pnas.2221967120. PMC 10214187. PMID 37186857.

ebi.ac.uk (Global: 5,849^th place; English: 7,886^th place)

IntAct. "Proteins, Interactions, Binary interactions and N-ary interactions". www.ebi.ac.uk. Retrieved 19 November 2018.

harvard.edu (Global: 18^th place; English: 17^th place)

ui.adsabs.harvard.edu

Herce HD, Deng W, Helma J, Leonhardt H, Cardoso MC (2013). "Visualization and targeted disruption of protein interactions in living cells". Nature Communications. 4 2660. Bibcode:2013NatCo...4.2660H. doi:10.1038/ncomms3660. PMC 3826628. PMID 24154492.
Mashaghi AR, Ramezanpour A, Karimipour V (2004). "Investigation of a protein complex network". The European Physical Journal B. 41 (1): 113–121. arXiv:cond-mat/0304207. Bibcode:2004EPJB...41..113M. doi:10.1140/epjb/e2004-00301-0. S2CID 9233932.
Hanukoglu I (December 2017). "Conservation of the Enzyme-Coenzyme Interfaces in FAD and NADP Binding Adrenodoxin Reductase-A Ubiquitous Enzyme". Journal of Molecular Evolution. 85 (5–6): 205–218. Bibcode:2017JMolE..85..205H. doi:10.1007/s00239-017-9821-9. PMID 29177972. S2CID 7120148.
Jones S, Thornton JM (January 1996). "Principles of protein-protein interactions". Proceedings of the National Academy of Sciences of the United States of America. 93 (1): 13–20. Bibcode:1996PNAS...93...13J. doi:10.1073/pnas.93.1.13. PMC 40170. PMID 8552589.
Kendrew JC, Bodo G, Dintzis HM, Parrish RG, Wyckoff H, Phillips DC (March 1958). "A three-dimensional model of the myoglobin molecule obtained by x-ray analysis". Nature. 181 (4610): 662–666. Bibcode:1958Natur.181..662K. doi:10.1038/181662a0. PMID 13517261. S2CID 4162786.
Chothia C, Janin J (August 1975). "Principles of protein-protein recognition". Nature. 256 (5520): 705–708. Bibcode:1975Natur.256..705C. doi:10.1038/256705a0. PMID 1153006. S2CID 4292325.
Velásquez-Zapata V, Elmore JM, Banerjee S, Dorman KS, Wise RP (April 2021). "Next-generation yeast-two-hybrid analysis with Y2H-SCORES identifies novel interactors of the MLA immune receptor". PLOS Computational Biology. 17 (4) e1008890. Bibcode:2021PLSCB..17E8890V. doi:10.1371/journal.pcbi.1008890. PMC 8046355. PMID 33798202.
Ramachandran N, Hainsworth E, Bhullar B, Eisenstein S, Rosen B, Lau AY, et al. (July 2004). "Self-assembling protein microarrays". Science. 305 (5680): 86–90. Bibcode:2004Sci...305...86R. doi:10.1126/science.1097639. PMID 15232106. S2CID 20936301.
Badal VD, Kundrotas PJ, Vakser IA (December 2015). "Text Mining for Protein Docking". PLOS Computational Biology. 11 (12) e1004630. Bibcode:2015PLSCB..11E4630B. doi:10.1371/journal.pcbi.1004630. PMC 4674139. PMID 26650466.
Miller JP, Lo RS, Ben-Hur A, Desmarais C, Stagljar I, Noble WS, et al. (August 2005). "Large-scale identification of yeast integral membrane protein interactions". Proceedings of the National Academy of Sciences of the United States of America. 102 (34): 12123–12128. Bibcode:2005PNAS..10212123M. doi:10.1073/pnas.0505482102. PMC 1189342. PMID 16093310.
De Domenico M, Nicosia V, Arenas A, Latora V (April 2015). "Structural reducibility of multilayer networks". Nature Communications. 6 6864. arXiv:1405.0425. Bibcode:2015NatCo...6.6864D. doi:10.1038/ncomms7864. PMID 25904309. S2CID 16776349.
Hargreaves D, Carbajo RJ, Bodnarchuk MS, Embrey K, Rawlins PB, Packer M, et al. (May 2023). "Design of rigid protein-protein interaction inhibitors enables targeting of undruggable Mcl-1". Proceedings of the National Academy of Sciences of the United States of America. 120 (21) e2221967120. Bibcode:2023PNAS..12021967H. doi:10.1073/pnas.2221967120. PMC 10214187. PMID 37186857.

nih.gov (Global: 4^th place; English: 4^th place)

pubmed.ncbi.nlm.nih.gov

Titeca K, Lemmens I, Tavernier J, Eyckerman S (January 2019). "Discovering cellular protein-protein interactions: Technological strategies and opportunities". Mass Spectrometry Reviews. 38 (1): 79–111. doi:10.1002/mas.21574. PMID 29957823.
Herce HD, Deng W, Helma J, Leonhardt H, Cardoso MC (2013). "Visualization and targeted disruption of protein interactions in living cells". Nature Communications. 4 2660. Bibcode:2013NatCo...4.2660H. doi:10.1038/ncomms3660. PMC 3826628. PMID 24154492.
Isa NF, Bensaude O, Murphy S (February 2022). "Amber Suppression Technology for Mapping Site-specific Viral-host Protein Interactions in Mammalian Cells". Bio-Protocol. 12 (3) e4315. doi:10.21769/bioprotoc.4315. PMC 8855090. PMID 35284605.
Brandt ME, Vickery LE (August 1993). "Charge pair interactions stabilizing ferredoxin-ferredoxin reductase complexes. Identification by complementary site-specific mutations". The Journal of Biological Chemistry. 268 (23): 17126–17130. doi:10.1016/S0021-9258(19)85311-5. PMID 8349601.
Hanukoglu I (December 2017). "Conservation of the Enzyme-Coenzyme Interfaces in FAD and NADP Binding Adrenodoxin Reductase-A Ubiquitous Enzyme". Journal of Molecular Evolution. 85 (5–6): 205–218. Bibcode:2017JMolE..85..205H. doi:10.1007/s00239-017-9821-9. PMID 29177972. S2CID 7120148.
Jones S, Thornton JM (January 1996). "Principles of protein-protein interactions". Proceedings of the National Academy of Sciences of the United States of America. 93 (1): 13–20. Bibcode:1996PNAS...93...13J. doi:10.1073/pnas.93.1.13. PMC 40170. PMID 8552589.
Qin K, Sethi PR, Lambert NA (August 2008). "Abundance and stability of complexes containing inactive G protein-coupled receptors and G proteins". FASEB Journal. 22 (8): 2920–2927. doi:10.1096/fj.08-105775. PMC 2493464. PMID 18434433.
Qin K, Dong C, Wu G, Lambert NA (August 2011). "Inactive-state preassembly of G(q)-coupled receptors and G(q) heterotrimers". Nature Chemical Biology. 7 (10): 740–747. doi:10.1038/nchembio.642. PMC 3177959. PMID 21873996.
Malhis N, Gsponer J (June 2015). "Computational identification of MoRFs in protein sequences". Bioinformatics. 31 (11): 1738–1744. doi:10.1093/bioinformatics/btv060. PMC 4443681. PMID 25637562.
Westermarck J, Ivaska J, Corthals GL (July 2013). "Identification of protein interactions involved in cellular signaling". Molecular & Cellular Proteomics. 12 (7): 1752–1763. doi:10.1074/mcp.R113.027771. PMC 3708163. PMID 23481661.
Janin J (December 1999). "Wet and dry interfaces: the role of solvent in protein-protein and protein-DNA recognition". Structure. 7 (12): R277 – R279. doi:10.1016/s0969-2126(00)88333-1. PMID 10647173.
Barillari C, Taylor J, Viner R, Essex JW (March 2007). "Classification of water molecules in protein binding sites". Journal of the American Chemical Society. 129 (9): 2577–2587. doi:10.1021/ja066980q. PMID 17288418.
Lisova O, Belkadi L, Bedouelle H (April 2014). "Direct and indirect interactions in the recognition between a cross-neutralizing antibody and the four serotypes of dengue virus". Journal of Molecular Recognition. 27 (4): 205–214. doi:10.1002/jmr.2352. PMID 24591178. S2CID 5416842.
England P, Brégégère F, Bedouelle H (January 1997). "Energetic and kinetic contributions of contact residues of antibody D1.3 in the interaction with lysozyme". Biochemistry. 36 (1): 164–172. CiteSeerX 10.1.1.613.413. doi:10.1021/bi961419y. PMID 8993330.
Janin J, Chothia C (September 1990). "The structure of protein-protein recognition sites". The Journal of Biological Chemistry. 265 (27): 16027–16030. doi:10.1016/S0021-9258(17)46181-3. PMID 2204619.
Kendrew JC, Bodo G, Dintzis HM, Parrish RG, Wyckoff H, Phillips DC (March 1958). "A three-dimensional model of the myoglobin molecule obtained by x-ray analysis". Nature. 181 (4610): 662–666. Bibcode:1958Natur.181..662K. doi:10.1038/181662a0. PMID 13517261. S2CID 4162786.
Cooper DR, Porebski PJ, Chruszcz M, Minor W (August 2011). "X-ray crystallography: Assessment and validation of protein-small molecule complexes for drug discovery". Expert Opinion on Drug Discovery. 6 (8): 771–782. doi:10.1517/17460441.2011.585154. PMC 3138648. PMID 21779303.
Wand AJ, Englander SW (August 1996). "Protein complexes studied by NMR spectroscopy". Current Opinion in Biotechnology. 7 (4): 403–408. doi:10.1016/s0958-1669(96)80115-7. PMC 3442359. PMID 8768898.
Vinogradova O, Qin J (2012). "NMR as a unique tool in assessment and complex determination of weak protein–protein interactions". In Zhu G (ed.). NMR of Proteins and Small Biomolecules. Topics in Current Chemistry. Vol. 326. Springer Berlin. pp. 35–45. doi:10.1007/128_2011_216. ISBN 978-3-642-28916-3. PMC 3676910. PMID 21809187.
Yan C, Wu F, Jernigan RL, Dobbs D, Honavar V (January 2008). "Characterization of protein-protein interfaces". The Protein Journal. 27 (1): 59–70. doi:10.1007/s10930-007-9108-x. PMC 2566606. PMID 17851740.
Jones S, Thornton JM (September 1997). "Analysis of protein-protein interaction sites using surface patches". Journal of Molecular Biology. 272 (1): 121–132. doi:10.1006/jmbi.1997.1234. PMID 9299342.
Chothia C, Janin J (August 1975). "Principles of protein-protein recognition". Nature. 256 (5520): 705–708. Bibcode:1975Natur.256..705C. doi:10.1038/256705a0. PMID 1153006. S2CID 4292325.
Phizicky EM, Fields S (March 1995). "Protein-protein interactions: methods for detection and analysis". Microbiological Reviews. 59 (1): 94–123. doi:10.1128/MMBR.59.1.94-123.1995. PMC 239356. PMID 7708014.
Pagel P, Kovac S, Oesterheld M, Brauner B, Dunger-Kaltenbach I, Frishman G, et al. (March 2005). "The MIPS mammalian protein-protein interaction database". Bioinformatics. 21 (6): 832–834. doi:10.1093/bioinformatics/bti115. PMID 15531608. Retrieved 2 January 2021.
Terentiev AA, Moldogazieva NT, Shaitan KV (December 2009). "Dynamic proteomics in modeling of the living cell. Protein-protein interactions". Biochemistry. Biokhimiia. 74 (13): 1586–1607. doi:10.1134/s0006297909130112. PMID 20210711. S2CID 19815231.
Wodak SJ, Vlasblom J, Turinsky AL, Pu S (December 2013). "Protein-protein interaction networks: the puzzling riches". Current Opinion in Structural Biology. 23 (6): 941–953. doi:10.1016/j.sbi.2013.08.002. PMID 24007795.
Banerjee S, Velásquez-Zapata V, Fuerst G, Elmore JM, Wise RP (July 2021). "NGPINT: a next-generation protein-protein interaction software". Briefings in Bioinformatics. 22 (4). doi:10.1093/bib/bbaa351. PMID 33367498.
Velásquez-Zapata V, Elmore JM, Banerjee S, Dorman KS, Wise RP (April 2021). "Next-generation yeast-two-hybrid analysis with Y2H-SCORES identifies novel interactors of the MLA immune receptor". PLOS Computational Biology. 17 (4) e1008890. Bibcode:2021PLSCB..17E8890V. doi:10.1371/journal.pcbi.1008890. PMC 8046355. PMID 33798202.
Rajagopala SV, Sikorski P, Caufield JH, Tovchigrechko A, Uetz P (December 2012). "Studying protein complexes by the yeast two-hybrid system". Methods. 58 (4): 392–399. doi:10.1016/j.ymeth.2012.07.015. PMC 3517932. PMID 22841565.
Stelzl U, Wanker EE (December 2006). "The value of high quality protein-protein interaction networks for systems biology". Current Opinion in Chemical Biology. 10 (6): 551–558. doi:10.1016/j.cbpa.2006.10.005. PMID 17055769.
Petschnigg J, Snider J, Stagljar I (February 2011). "Interactive proteomics research technologies: recent applications and advances". Current Opinion in Biotechnology. 22 (1): 50–58. doi:10.1016/j.copbio.2010.09.001. PMID 20884196.
Venkatesan K, Rual JF, Vazquez A, Stelzl U, Lemmens I, Hirozane-Kishikawa T, et al. (January 2009). "An empirical framework for binary interactome mapping". Nature Methods. 6 (1): 83–90. doi:10.1038/nmeth.1280. PMC 2872561. PMID 19060904.
Battesti A, Bouveret E (December 2012). "The bacterial two-hybrid system based on adenylate cyclase reconstitution in Escherichia coli". Methods. 58 (4): 325–334. doi:10.1016/j.ymeth.2012.07.018. PMID 22841567.
Brettner LM, Masel J (September 2012). "Protein stickiness, rather than number of functional protein-protein interactions, predicts expression noise and plasticity in yeast". BMC Systems Biology. 6: 128. doi:10.1186/1752-0509-6-128. PMC 3527306. PMID 23017156.
Ramachandran N, Hainsworth E, Bhullar B, Eisenstein S, Rosen B, Lau AY, et al. (July 2004). "Self-assembling protein microarrays". Science. 305 (5680): 86–90. Bibcode:2004Sci...305...86R. doi:10.1126/science.1097639. PMID 15232106. S2CID 20936301.
Ramachandran N, Raphael JV, Hainsworth E, Demirkan G, Fuentes MG, Rolfs A, et al. (June 2008). "Next-generation high-density self-assembling functional protein arrays". Nature Methods. 5 (6): 535–538. doi:10.1038/nmeth.1210. PMC 3070491. PMID 18469824.
Bernstein H, Edgar RS, Denhardt GH (June 1965). "Intragenic Complementation among Temperature Sensitive Mutants of Bacteriophage T4D". Genetics. 51 (6): 987–1002. doi:10.1093/genetics/51.6.987. PMC 1210828. PMID 14337770.
Smallwood S, Cevik B, Moyer SA (December 2002). "Intragenic complementation and oligomerization of the L subunit of the sendai virus RNA polymerase". Virology. 304 (2): 235–45. doi:10.1006/viro.2002.1720. PMID 12504565.
Rodríguez-Pombo P, Pérez-Cerdá C, Pérez B, Desviat LR, Sánchez-Pulido L, Ugarte M (June 2005). "Towards a model to explain the intragenic complementation in the heteromultimeric protein propionyl-CoA carboxylase". Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease. 1740 (3): 489–98. doi:10.1016/j.bbadis.2004.10.009. PMID 15949719.
Crick FH, Orgel LE (January 1964). "The theory of inter-allelic complementation". Journal of Molecular Biology. 8: 161–5. doi:10.1016/s0022-2836(64)80156-x. PMID 14149958.
Bertolini M, Fenzl K, Kats I, Wruck F, Tippmann F, Schmitt J, et al. (January 2021). "Interactions between nascent proteins translated by adjacent ribosomes drive homomer assembly". Science. 371 (6524): 57–64. doi:10.1126/science.abc7151. PMC 7613021. PMID 33384371.
Jehle H (September 1963). "Intermolecular forces and biological specificity". Proceedings of the National Academy of Sciences of the United States of America. 50 (3): 516–24. doi:10.1073/pnas.50.3.516. PMC 221211. PMID 16578546.
Marcotte EM, Pellegrini M, Ng HL, Rice DW, Yeates TO, Eisenberg D (July 1999). "Detecting protein function and protein-protein interactions from genome sequences". Science. 285 (5428): 751–753. CiteSeerX 10.1.1.535.9650. doi:10.1126/science.285.5428.751. PMID 10427000.
Raman K (February 2010). "Construction and analysis of protein-protein interaction networks". Automated Experimentation. 2 (1): 2. doi:10.1186/1759-4499-2-2. PMC 2834675. PMID 20334628.
Badal VD, Kundrotas PJ, Vakser IA (December 2015). "Text Mining for Protein Docking". PLOS Computational Biology. 11 (12) e1004630. Bibcode:2015PLSCB..11E4630B. doi:10.1371/journal.pcbi.1004630. PMC 4674139. PMID 26650466.
Papanikolaou N, Pavlopoulos GA, Theodosiou T, Iliopoulos I (March 2015). "Protein-protein interaction predictions using text mining methods". Methods. Text mining of biomedical literature. 74: 47–53. doi:10.1016/j.ymeth.2014.10.026. PMID 25448298.
Kotlyar M, Rossos AE, Jurisica I (December 2017). "Prediction of Protein-Protein Interactions". Current Protocols in Bioinformatics. 60 (1): 8.2.1–8.2.14. doi:10.1002/cpbi.38. PMID 29220074. S2CID 19509320.
Ding Z, Kihara D (August 2018). "Computational Methods for Predicting Protein-Protein Interactions Using Various Protein Features". Current Protocols in Protein Science. 93 (1) e62. doi:10.1002/cpps.62. PMC 6097941. PMID 29927082.
Sarkar D, Saha S (September 2019). "Machine-learning techniques for the prediction of protein-protein interactions". Journal of Biosciences. 44 (4) 104. doi:10.1007/s12038-019-9909-z. PMID 31502581. S2CID 199668359.
Miller JP, Lo RS, Ben-Hur A, Desmarais C, Stagljar I, Noble WS, et al. (August 2005). "Large-scale identification of yeast integral membrane protein interactions". Proceedings of the National Academy of Sciences of the United States of America. 102 (34): 12123–12128. Bibcode:2005PNAS..10212123M. doi:10.1073/pnas.0505482102. PMC 1189342. PMID 16093310.
Lalonde S, Sero A, Pratelli R, Pilot G, Chen J, Sardi MI, et al. (2010). "A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2". Frontiers in Physiology. 1: 24. doi:10.3389/fphys.2010.00024. PMC 3059934. PMID 21423366.
Qi Y, Bar-Joseph Z, Klein-Seetharaman J (May 2006). "Evaluation of different biological data and computational classification methods for use in protein interaction prediction". Proteins. 63 (3): 490–500. doi:10.1002/prot.20865. PMC 3250929. PMID 16450363.
Qi Y, Dhiman HK, Bhola N, Budyak I, Kar S, Man D, et al. (December 2009). "Systematic prediction of human membrane receptor interactions". Proteomics. 9 (23): 5243–5255. doi:10.1002/pmic.200900259. PMC 3076061. PMID 19798668.
Ganapathiraju MK, Thahir M, Handen A, Sarkar SN, Sweet RA, Nimgaonkar VL, et al. (April 2016). "Schizophrenia interactome with 504 novel protein-protein interactions". npj Schizophrenia. 2 16012. doi:10.1038/npjschz.2016.12. PMC 4898894. PMID 27336055.
Poot Velez AH, Fontove F, Del Rio G (July 2020). "Protein-Protein Interactions Efficiently Modeled by Residue Cluster Classes". International Journal of Molecular Sciences. 21 (13): 4787. doi:10.3390/ijms21134787. PMC 7370293. PMID 32640745.
Corral-Corral R, Chavez E, Del Rio G (December 2015). "Machine Learnable Fold Space Representation based on Residue Cluster Classes". Computational Biology and Chemistry. 59 Pt A: 1–7. doi:10.1016/j.compbiolchem.2015.07.010. PMID 26366526.
Xenarios I, Rice DW, Salwinski L, Baron MK, Marcotte EM, Eisenberg D (January 2000). "DIP: the database of interacting proteins". Nucleic Acids Research. 28 (1): 289–291. doi:10.1093/nar/28.1.289. PMC 102387. PMID 10592249.
McDowall MD, Scott MS, Barton GJ (January 2009). "PIPs: human protein-protein interaction prediction database". Nucleic Acids Research. 37 (Database issue): D651 – D656. doi:10.1093/nar/gkn870. PMC 2686497. PMID 18988626.
Sprinzak E, Sattath S, Margalit H (April 2003). "How reliable are experimental protein-protein interaction data?". Journal of Molecular Biology. 327 (5): 919–923. doi:10.1016/S0022-2836(03)00239-0. PMID 12662919. Retrieved 2 January 2021.
Schwikowski B, Uetz P, Fields S (December 2000). "A network of protein-protein interactions in yeast". Nature Biotechnology. 18 (12): 1257–1261. doi:10.1038/82360. PMID 11101803. S2CID 3009359.
Rigaut G, Shevchenko A, Rutz B, Wilm M, Mann M, Séraphin B (October 1999). "A generic protein purification method for protein complex characterization and proteome exploration". Nature Biotechnology. 17 (10): 1030–1032. doi:10.1038/13732. PMID 10504710. S2CID 663553.
Kohl M, Wiese S, Warscheid B (2011). "Cytoscape: Software for Visualization and Analysis of Biological Networks". Data Mining in Proteomics. Methods in Molecular Biology. Vol. 696. pp. 291–303. doi:10.1007/978-1-60761-987-1_18. ISBN 978-1-60761-986-4. PMID 21063955.
Ideker T, Ozier O, Schwikowski B, Siegel AF (1 January 2002). "Discovering regulatory and signalling circuits in molecular interaction networks". Bioinformatics. 18 (Suppl 1): S233 – S240. doi:10.1093/bioinformatics/18.suppl_1.s233. PMID 12169552.
Ayati M, Erten S, Chance MR, Koyutürk M (December 2015). "MOBAS: identification of disease-associated protein subnetworks using modularity-based scoring". EURASIP Journal on Bioinformatics & Systems Biology. 2015 (1) 7. doi:10.1186/s13637-015-0025-6. PMC 5270451. PMID 28194175.
De Domenico M, Nicosia V, Arenas A, Latora V (April 2015). "Structural reducibility of multilayer networks". Nature Communications. 6 6864. arXiv:1405.0425. Bibcode:2015NatCo...6.6864D. doi:10.1038/ncomms7864. PMID 25904309. S2CID 16776349.
Fischer B, Sandmann T, Horn T, Billmann M, Chaudhary V, Huber W, et al. (March 2015). "A map of directional genetic interactions in a metazoan cell". eLife. 4. doi:10.7554/eLife.05464. PMC 4384530. PMID 25748138.
Vinayagam A, Zirin J, Roesel C, Hu Y, Yilmazel B, Samsonova AA, et al. (January 2014). "Integrating protein-protein interaction networks with phenotypes reveals signs of interactions". Nature Methods. 11 (1): 94–99. doi:10.1038/nmeth.2733. PMC 3877743. PMID 24240319.
Chen GI, Gingras AC (July 2007). "Affinity-purification mass spectrometry (AP-MS) of serine/threonine phosphatases". Methods. 42 (3): 298–305. doi:10.1016/j.ymeth.2007.02.018. PMID 17532517.
Laraia L, McKenzie G, Spring DR, Venkitaraman AR, Huggins DJ (June 2015). "Overcoming Chemical, Biological, and Computational Challenges in the Development of Inhibitors Targeting Protein-Protein Interactions". Chemistry & Biology. 22 (6): 689–703. doi:10.1016/j.chembiol.2015.04.019. PMC 4518475. PMID 26091166.
Arkin MR, Wells JA (April 2004). "Small-molecule inhibitors of protein-protein interactions: progressing towards the dream". Nature Reviews. Drug Discovery. 3 (4): 301–317. doi:10.1038/nrd1343. PMC 4179228. PMID 15060526. S2CID 13879559.
Chen J, Sawyer N, Regan L (April 2013). "Protein-protein interactions: general trends in the relationship between binding affinity and interfacial buried surface area". Protein Science. 22 (4): 510–515. doi:10.1002/pro.2230. PMC 3610057. PMID 23389845.
Jaiswal A, Lakshmi PT (9 September 2014). "Molecular inhibition of telomerase recruitment using designer peptides: an in silico approach". Journal of Biomolecular Structure & Dynamics. 33 (7): 1442–1459. doi:10.1080/07391102.2014.953207. PMID 25204447. S2CID 27293727.
Jiang Z, Kuo YH, Zhong M, Zhang J, Zhou XX, Xing L, et al. (July 2022). "Adaptor-Specific Antibody Fragment Inhibitors for the Intracellular Modulation of p97 (VCP) Protein-Protein Interactions". Journal of the American Chemical Society. 144 (29): 13218–13225. doi:10.1021/jacs.2c03665. PMC 9335864. PMID 35819848.
Soini L, Leysen S, Davis J, Ottmann C (August 2022). "Molecular glues to stabilise protein-protein interactions". Current Opinion in Chemical Biology. 69 102169. doi:10.1016/j.cbpa.2022.102169. PMID 35749929.
Ivanov AA, Khuri FR, Fu H (July 2013). "Targeting protein-protein interactions as an anticancer strategy". Trends in Pharmacological Sciences. 34 (7): 393–400. doi:10.1016/j.tips.2013.04.007. PMC 3773978. PMID 23725674.
Hargreaves D, Carbajo RJ, Bodnarchuk MS, Embrey K, Rawlins PB, Packer M, et al. (May 2023). "Design of rigid protein-protein interaction inhibitors enables targeting of undruggable Mcl-1". Proceedings of the National Academy of Sciences of the United States of America. 120 (21) e2221967120. Bibcode:2023PNAS..12021967H. doi:10.1073/pnas.2221967120. PMC 10214187. PMID 37186857.

ncbi.nlm.nih.gov

Herce HD, Deng W, Helma J, Leonhardt H, Cardoso MC (2013). "Visualization and targeted disruption of protein interactions in living cells". Nature Communications. 4 2660. Bibcode:2013NatCo...4.2660H. doi:10.1038/ncomms3660. PMC 3826628. PMID 24154492.
Isa NF, Bensaude O, Murphy S (February 2022). "Amber Suppression Technology for Mapping Site-specific Viral-host Protein Interactions in Mammalian Cells". Bio-Protocol. 12 (3) e4315. doi:10.21769/bioprotoc.4315. PMC 8855090. PMID 35284605.
Jones S, Thornton JM (January 1996). "Principles of protein-protein interactions". Proceedings of the National Academy of Sciences of the United States of America. 93 (1): 13–20. Bibcode:1996PNAS...93...13J. doi:10.1073/pnas.93.1.13. PMC 40170. PMID 8552589.
Qin K, Sethi PR, Lambert NA (August 2008). "Abundance and stability of complexes containing inactive G protein-coupled receptors and G proteins". FASEB Journal. 22 (8): 2920–2927. doi:10.1096/fj.08-105775. PMC 2493464. PMID 18434433.
Qin K, Dong C, Wu G, Lambert NA (August 2011). "Inactive-state preassembly of G(q)-coupled receptors and G(q) heterotrimers". Nature Chemical Biology. 7 (10): 740–747. doi:10.1038/nchembio.642. PMC 3177959. PMID 21873996.
Malhis N, Gsponer J (June 2015). "Computational identification of MoRFs in protein sequences". Bioinformatics. 31 (11): 1738–1744. doi:10.1093/bioinformatics/btv060. PMC 4443681. PMID 25637562.
Westermarck J, Ivaska J, Corthals GL (July 2013). "Identification of protein interactions involved in cellular signaling". Molecular & Cellular Proteomics. 12 (7): 1752–1763. doi:10.1074/mcp.R113.027771. PMC 3708163. PMID 23481661.
Cooper DR, Porebski PJ, Chruszcz M, Minor W (August 2011). "X-ray crystallography: Assessment and validation of protein-small molecule complexes for drug discovery". Expert Opinion on Drug Discovery. 6 (8): 771–782. doi:10.1517/17460441.2011.585154. PMC 3138648. PMID 21779303.
Wand AJ, Englander SW (August 1996). "Protein complexes studied by NMR spectroscopy". Current Opinion in Biotechnology. 7 (4): 403–408. doi:10.1016/s0958-1669(96)80115-7. PMC 3442359. PMID 8768898.
Vinogradova O, Qin J (2012). "NMR as a unique tool in assessment and complex determination of weak protein–protein interactions". In Zhu G (ed.). NMR of Proteins and Small Biomolecules. Topics in Current Chemistry. Vol. 326. Springer Berlin. pp. 35–45. doi:10.1007/128_2011_216. ISBN 978-3-642-28916-3. PMC 3676910. PMID 21809187.
Yan C, Wu F, Jernigan RL, Dobbs D, Honavar V (January 2008). "Characterization of protein-protein interfaces". The Protein Journal. 27 (1): 59–70. doi:10.1007/s10930-007-9108-x. PMC 2566606. PMID 17851740.
Phizicky EM, Fields S (March 1995). "Protein-protein interactions: methods for detection and analysis". Microbiological Reviews. 59 (1): 94–123. doi:10.1128/MMBR.59.1.94-123.1995. PMC 239356. PMID 7708014.
Velásquez-Zapata V, Elmore JM, Banerjee S, Dorman KS, Wise RP (April 2021). "Next-generation yeast-two-hybrid analysis with Y2H-SCORES identifies novel interactors of the MLA immune receptor". PLOS Computational Biology. 17 (4) e1008890. Bibcode:2021PLSCB..17E8890V. doi:10.1371/journal.pcbi.1008890. PMC 8046355. PMID 33798202.
Rajagopala SV, Sikorski P, Caufield JH, Tovchigrechko A, Uetz P (December 2012). "Studying protein complexes by the yeast two-hybrid system". Methods. 58 (4): 392–399. doi:10.1016/j.ymeth.2012.07.015. PMC 3517932. PMID 22841565.
Venkatesan K, Rual JF, Vazquez A, Stelzl U, Lemmens I, Hirozane-Kishikawa T, et al. (January 2009). "An empirical framework for binary interactome mapping". Nature Methods. 6 (1): 83–90. doi:10.1038/nmeth.1280. PMC 2872561. PMID 19060904.
Brettner LM, Masel J (September 2012). "Protein stickiness, rather than number of functional protein-protein interactions, predicts expression noise and plasticity in yeast". BMC Systems Biology. 6: 128. doi:10.1186/1752-0509-6-128. PMC 3527306. PMID 23017156.
Ramachandran N, Raphael JV, Hainsworth E, Demirkan G, Fuentes MG, Rolfs A, et al. (June 2008). "Next-generation high-density self-assembling functional protein arrays". Nature Methods. 5 (6): 535–538. doi:10.1038/nmeth.1210. PMC 3070491. PMID 18469824.
Bernstein H, Edgar RS, Denhardt GH (June 1965). "Intragenic Complementation among Temperature Sensitive Mutants of Bacteriophage T4D". Genetics. 51 (6): 987–1002. doi:10.1093/genetics/51.6.987. PMC 1210828. PMID 14337770.
Bertolini M, Fenzl K, Kats I, Wruck F, Tippmann F, Schmitt J, et al. (January 2021). "Interactions between nascent proteins translated by adjacent ribosomes drive homomer assembly". Science. 371 (6524): 57–64. doi:10.1126/science.abc7151. PMC 7613021. PMID 33384371.
Jehle H (September 1963). "Intermolecular forces and biological specificity". Proceedings of the National Academy of Sciences of the United States of America. 50 (3): 516–24. doi:10.1073/pnas.50.3.516. PMC 221211. PMID 16578546.
Raman K (February 2010). "Construction and analysis of protein-protein interaction networks". Automated Experimentation. 2 (1): 2. doi:10.1186/1759-4499-2-2. PMC 2834675. PMID 20334628.
Badal VD, Kundrotas PJ, Vakser IA (December 2015). "Text Mining for Protein Docking". PLOS Computational Biology. 11 (12) e1004630. Bibcode:2015PLSCB..11E4630B. doi:10.1371/journal.pcbi.1004630. PMC 4674139. PMID 26650466.
Ding Z, Kihara D (August 2018). "Computational Methods for Predicting Protein-Protein Interactions Using Various Protein Features". Current Protocols in Protein Science. 93 (1) e62. doi:10.1002/cpps.62. PMC 6097941. PMID 29927082.
Miller JP, Lo RS, Ben-Hur A, Desmarais C, Stagljar I, Noble WS, et al. (August 2005). "Large-scale identification of yeast integral membrane protein interactions". Proceedings of the National Academy of Sciences of the United States of America. 102 (34): 12123–12128. Bibcode:2005PNAS..10212123M. doi:10.1073/pnas.0505482102. PMC 1189342. PMID 16093310.
Lalonde S, Sero A, Pratelli R, Pilot G, Chen J, Sardi MI, et al. (2010). "A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2". Frontiers in Physiology. 1: 24. doi:10.3389/fphys.2010.00024. PMC 3059934. PMID 21423366.
Qi Y, Bar-Joseph Z, Klein-Seetharaman J (May 2006). "Evaluation of different biological data and computational classification methods for use in protein interaction prediction". Proteins. 63 (3): 490–500. doi:10.1002/prot.20865. PMC 3250929. PMID 16450363.
Qi Y, Dhiman HK, Bhola N, Budyak I, Kar S, Man D, et al. (December 2009). "Systematic prediction of human membrane receptor interactions". Proteomics. 9 (23): 5243–5255. doi:10.1002/pmic.200900259. PMC 3076061. PMID 19798668.
Ganapathiraju MK, Thahir M, Handen A, Sarkar SN, Sweet RA, Nimgaonkar VL, et al. (April 2016). "Schizophrenia interactome with 504 novel protein-protein interactions". npj Schizophrenia. 2 16012. doi:10.1038/npjschz.2016.12. PMC 4898894. PMID 27336055.
Poot Velez AH, Fontove F, Del Rio G (July 2020). "Protein-Protein Interactions Efficiently Modeled by Residue Cluster Classes". International Journal of Molecular Sciences. 21 (13): 4787. doi:10.3390/ijms21134787. PMC 7370293. PMID 32640745.
Xenarios I, Rice DW, Salwinski L, Baron MK, Marcotte EM, Eisenberg D (January 2000). "DIP: the database of interacting proteins". Nucleic Acids Research. 28 (1): 289–291. doi:10.1093/nar/28.1.289. PMC 102387. PMID 10592249.
McDowall MD, Scott MS, Barton GJ (January 2009). "PIPs: human protein-protein interaction prediction database". Nucleic Acids Research. 37 (Database issue): D651 – D656. doi:10.1093/nar/gkn870. PMC 2686497. PMID 18988626.
Ayati M, Erten S, Chance MR, Koyutürk M (December 2015). "MOBAS: identification of disease-associated protein subnetworks using modularity-based scoring". EURASIP Journal on Bioinformatics & Systems Biology. 2015 (1) 7. doi:10.1186/s13637-015-0025-6. PMC 5270451. PMID 28194175.
Fischer B, Sandmann T, Horn T, Billmann M, Chaudhary V, Huber W, et al. (March 2015). "A map of directional genetic interactions in a metazoan cell". eLife. 4. doi:10.7554/eLife.05464. PMC 4384530. PMID 25748138.
Vinayagam A, Zirin J, Roesel C, Hu Y, Yilmazel B, Samsonova AA, et al. (January 2014). "Integrating protein-protein interaction networks with phenotypes reveals signs of interactions". Nature Methods. 11 (1): 94–99. doi:10.1038/nmeth.2733. PMC 3877743. PMID 24240319.
Laraia L, McKenzie G, Spring DR, Venkitaraman AR, Huggins DJ (June 2015). "Overcoming Chemical, Biological, and Computational Challenges in the Development of Inhibitors Targeting Protein-Protein Interactions". Chemistry & Biology. 22 (6): 689–703. doi:10.1016/j.chembiol.2015.04.019. PMC 4518475. PMID 26091166.
Arkin MR, Wells JA (April 2004). "Small-molecule inhibitors of protein-protein interactions: progressing towards the dream". Nature Reviews. Drug Discovery. 3 (4): 301–317. doi:10.1038/nrd1343. PMC 4179228. PMID 15060526. S2CID 13879559.
Chen J, Sawyer N, Regan L (April 2013). "Protein-protein interactions: general trends in the relationship between binding affinity and interfacial buried surface area". Protein Science. 22 (4): 510–515. doi:10.1002/pro.2230. PMC 3610057. PMID 23389845.
Jiang Z, Kuo YH, Zhong M, Zhang J, Zhou XX, Xing L, et al. (July 2022). "Adaptor-Specific Antibody Fragment Inhibitors for the Intracellular Modulation of p97 (VCP) Protein-Protein Interactions". Journal of the American Chemical Society. 144 (29): 13218–13225. doi:10.1021/jacs.2c03665. PMC 9335864. PMID 35819848.
Ivanov AA, Khuri FR, Fu H (July 2013). "Targeting protein-protein interactions as an anticancer strategy". Trends in Pharmacological Sciences. 34 (7): 393–400. doi:10.1016/j.tips.2013.04.007. PMC 3773978. PMID 23725674.
Hargreaves D, Carbajo RJ, Bodnarchuk MS, Embrey K, Rawlins PB, Packer M, et al. (May 2023). "Design of rigid protein-protein interaction inhibitors enables targeting of undruggable Mcl-1". Proceedings of the National Academy of Sciences of the United States of America. 120 (21) e2221967120. Bibcode:2023PNAS..12021967H. doi:10.1073/pnas.2221967120. PMC 10214187. PMID 37186857.

oup.com (Global: 485^th place; English: 440^th place)

academic.oup.com

Pagel P, Kovac S, Oesterheld M, Brauner B, Dunger-Kaltenbach I, Frishman G, et al. (March 2005). "The MIPS mammalian protein-protein interaction database". Bioinformatics. 21 (6): 832–834. doi:10.1093/bioinformatics/bti115. PMID 15531608. Retrieved 2 January 2021.

psu.edu (Global: 207^th place; English: 136^th place)

citeseerx.ist.psu.edu

England P, Brégégère F, Bedouelle H (January 1997). "Energetic and kinetic contributions of contact residues of antibody D1.3 in the interaction with lysozyme". Biochemistry. 36 (1): 164–172. CiteSeerX 10.1.1.613.413. doi:10.1021/bi961419y. PMID 8993330.
Marcotte EM, Pellegrini M, Ng HL, Rice DW, Yeates TO, Eisenberg D (July 1999). "Detecting protein function and protein-protein interactions from genome sequences". Science. 285 (5428): 751–753. CiteSeerX 10.1.1.535.9650. doi:10.1126/science.285.5428.751. PMID 10427000.

sciencedirect.com (Global: 149^th place; English: 178^th place)

Sprinzak E, Sattath S, Margalit H (April 2003). "How reliable are experimental protein-protein interaction data?". Journal of Molecular Biology. 327 (5): 919–923. doi:10.1016/S0022-2836(03)00239-0. PMID 12662919. Retrieved 2 January 2021.

semanticscholar.org (Global: 11^th place; English: 8^th place)

api.semanticscholar.org

Mashaghi AR, Ramezanpour A, Karimipour V (2004). "Investigation of a protein complex network". The European Physical Journal B. 41 (1): 113–121. arXiv:cond-mat/0304207. Bibcode:2004EPJB...41..113M. doi:10.1140/epjb/e2004-00301-0. S2CID 9233932.
Hanukoglu I (December 2017). "Conservation of the Enzyme-Coenzyme Interfaces in FAD and NADP Binding Adrenodoxin Reductase-A Ubiquitous Enzyme". Journal of Molecular Evolution. 85 (5–6): 205–218. Bibcode:2017JMolE..85..205H. doi:10.1007/s00239-017-9821-9. PMID 29177972. S2CID 7120148.
Lisova O, Belkadi L, Bedouelle H (April 2014). "Direct and indirect interactions in the recognition between a cross-neutralizing antibody and the four serotypes of dengue virus". Journal of Molecular Recognition. 27 (4): 205–214. doi:10.1002/jmr.2352. PMID 24591178. S2CID 5416842.
Kendrew JC, Bodo G, Dintzis HM, Parrish RG, Wyckoff H, Phillips DC (March 1958). "A three-dimensional model of the myoglobin molecule obtained by x-ray analysis". Nature. 181 (4610): 662–666. Bibcode:1958Natur.181..662K. doi:10.1038/181662a0. PMID 13517261. S2CID 4162786.
Chothia C, Janin J (August 1975). "Principles of protein-protein recognition". Nature. 256 (5520): 705–708. Bibcode:1975Natur.256..705C. doi:10.1038/256705a0. PMID 1153006. S2CID 4292325.
Terentiev AA, Moldogazieva NT, Shaitan KV (December 2009). "Dynamic proteomics in modeling of the living cell. Protein-protein interactions". Biochemistry. Biokhimiia. 74 (13): 1586–1607. doi:10.1134/s0006297909130112. PMID 20210711. S2CID 19815231.
Ramachandran N, Hainsworth E, Bhullar B, Eisenstein S, Rosen B, Lau AY, et al. (July 2004). "Self-assembling protein microarrays". Science. 305 (5680): 86–90. Bibcode:2004Sci...305...86R. doi:10.1126/science.1097639. PMID 15232106. S2CID 20936301.
Kotlyar M, Rossos AE, Jurisica I (December 2017). "Prediction of Protein-Protein Interactions". Current Protocols in Bioinformatics. 60 (1): 8.2.1–8.2.14. doi:10.1002/cpbi.38. PMID 29220074. S2CID 19509320.
Sarkar D, Saha S (September 2019). "Machine-learning techniques for the prediction of protein-protein interactions". Journal of Biosciences. 44 (4) 104. doi:10.1007/s12038-019-9909-z. PMID 31502581. S2CID 199668359.
Schwikowski B, Uetz P, Fields S (December 2000). "A network of protein-protein interactions in yeast". Nature Biotechnology. 18 (12): 1257–1261. doi:10.1038/82360. PMID 11101803. S2CID 3009359.
Rigaut G, Shevchenko A, Rutz B, Wilm M, Mann M, Séraphin B (October 1999). "A generic protein purification method for protein complex characterization and proteome exploration". Nature Biotechnology. 17 (10): 1030–1032. doi:10.1038/13732. PMID 10504710. S2CID 663553.
De Domenico M, Nicosia V, Arenas A, Latora V (April 2015). "Structural reducibility of multilayer networks". Nature Communications. 6 6864. arXiv:1405.0425. Bibcode:2015NatCo...6.6864D. doi:10.1038/ncomms7864. PMID 25904309. S2CID 16776349.
Arkin MR, Wells JA (April 2004). "Small-molecule inhibitors of protein-protein interactions: progressing towards the dream". Nature Reviews. Drug Discovery. 3 (4): 301–317. doi:10.1038/nrd1343. PMC 4179228. PMID 15060526. S2CID 13879559.
Jaiswal A, Lakshmi PT (9 September 2014). "Molecular inhibition of telomerase recruitment using designer peptides: an in silico approach". Journal of Biomolecular Structure & Dynamics. 33 (7): 1442–1459. doi:10.1080/07391102.2014.953207. PMID 25204447. S2CID 27293727.

string-db.org (Global: low place; English: low place)

"STRING: functional protein association networks". string-db.org. Retrieved 19 November 2018.

usal.es (Global: 6,439^th place; English: low place)

cicblade.dep.usal.es

"Agile Protein Interactomes DataServer: About APID".

zenodo.org (Global: 621^st place; English: 380^th place)

Battesti A, Bouveret E (December 2012). "The bacterial two-hybrid system based on adenylate cyclase reconstitution in Escherichia coli". Methods. 58 (4): 325–334. doi:10.1016/j.ymeth.2012.07.018. PMID 22841567.
Corral-Corral R, Chavez E, Del Rio G (December 2015). "Machine Learnable Fold Space Representation based on Residue Cluster Classes". Computational Biology and Chemistry. 59 Pt A: 1–7. doi:10.1016/j.compbiolchem.2015.07.010. PMID 26366526.

Protein–protein interaction (English Wikipedia)

archive.org (Global: 6th place; English: 6th place)

arxiv.org (Global: 69th place; English: 59th place)

doi.org (Global: 2nd place; English: 2nd place)

ebi.ac.uk (Global: 5,849th place; English: 7,886th place)

harvard.edu (Global: 18th place; English: 17th place)