Protist (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Protist" in English language version.

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Harper D, Benton, Michael (2009). Introduction to Paleobiology and the Fossil Record. Wiley-Blackwell. p. 207. ISBN 978-1-4051-4157-4.
Haeckel, Ernst (1866). Generelle Morphologie der Organismen [The General Morphology of Organisms] (in German). Vol. 1. Berlin, (Germany): G. Reimer. pp. 215ff. From p. 215: "VII. Character des Protistenreiches." (VII. Character of the kingdom of Protists.)

biodiversitylibrary.org

Goldfuß (1818). "Ueber die Classification der Zoophyten" [On the classification of zoophytes]. Isis, Oder, Encyclopädische Zeitung von Oken (in German). 2 (6): 1008–1019. From p. 1008: "Erste Klasse. Urthiere. Protozoa." (First class. Primordial animals. Protozoa.) [Note: each column of each page of this journal is numbered; there are two columns per page.]
Carl Theodor Ernst von Siebold; Hermann Stannius (1846–1848). Lehrbuch der vergleichenden Anatomie Vol. 1: Wirbellose Thiere [Textbook of Comparative Anatomy Vol. 1: Invertebrate Animals] (in German). Vol. 1. Berlin, Germany: Veit. p. 3. p. 3: Erste Hauptgruppe. Protozoa. Thiere, in welchen die verschiedenen Systeme der Organe nicht scharf ausgeschieden sind, und deren unregelmässige Form und einfache Organisation sich auf eine Zelle reduziren lassen. [First principal group. Protozoa. Animals, in which the different systems of organs are not sharply separated, and whose irregular form and simple organization can be reduced to one cell.]
Haeckel, Ernst (1878). Das protistenreich. Eine populäre uebersicht über das formengebiet der niedersten lebewesen [The protistan kingdom. A popular survey of the forms of the lowest living beings] (in German). Leipzig: E. Günther. doi:10.5962/bhl.title.58542.

biologists.org

jcs.biologists.org

Dobell, C. (1909). "Chromidia and the binuclearity hypotheses: A review and a criticism" (PDF). Quarterly Journal of Microscopical Science. 53: 279–326.

biorxiv.org

Blaz, Jazmin; Galindo, Luis Javier; Heiss, Aaron A.; Kaur, Harpreet; Torruella, Guifré; Yang, Ashley; Thompson, L. Alexa; Filbert, Alexander; Warring, Sally; Narechania, Apurva; Shiratori, Takashi; Ishida, Ken-ichiro; Dacks, Joel B.; López-García, Purificación; Moreira, David; Kim, Eunsoo; Eme, Laura (January 2021). "High quality genome and transcriptome data for two new species of Mantamonas, a deep-branching eukaryote clade" (PDF). bioRxiv. doi:10.1101/2023.01.20.524885.

biostor.org

Corliss, J.O. (1995). "The ambiregnal protists and the codes of nomenclature: a brief review of the problem and of proposed solutions". Bulletin of Zoological Nomenclature. 52: 11–17. doi:10.5962/bhl.part.6717.

books.google.com

Marc J. Ratcliff (2009). "The Emergence of the Systematics of Infusoria". The Quest for the Invisible: Microscopy in the Enlightenment. Ashgate. pp. 177–216. ISBN 9781409480266.
Margulis L, Chapman MJ (2009-03-19). Kingdoms and Domains: An Illustrated Guide to the Phyla of Life on Earth. Academic Press. ISBN 9780080920146.

caltech.edu

resolver.caltech.edu

Gibson, Timothy M.; Shih, Patrick M.; Cumming, Vivien M.; Fischer, Woodward W.; Crockford, Peter W.; Hodgskiss, Malcolm S.W.; Wörndle, Sarah; Creaser, Robert A.; Rainbird, Robert H.; Skulski, Thomas M.; Halverson, Galen P. (2017). "Precise age of Bangiomorpha pubescens dates the origin of eukaryotic photosynthesis". Geology. 46 (2): 135–138. Bibcode:2018Geo....46..135G. doi:10.1130/G39829.1.

cam.ac.uk

repository.cam.ac.uk

Waller, Ross F.; Kořený, Ludĕk (2017). "Plastid Complexity in Dinoflagellates: A Picture of Gains, Losses, Replacements and Revisions". Advances in Botanical Research. 84: 105–143. doi:10.1016/bs.abr.2017.06.004. ISBN 978-0-12-802651-9.

cladocera.de

Stechmann A, Cavalier-Smith T (September 2003). "The root of the eukaryote tree pinpointed" (PDF). Current Biology. 13 (17): R665–667. Bibcode:2003CBio...13.R665S. doi:10.1016/S0960-9822(03)00602-X. PMID 12956967. S2CID 6702524.

conicet.gov.ar

ri.conicet.gov.ar

Nestell, Galina; Heredia, Susana; Mestre, Ana; Beresi, Matilde; González, Mercedes (November–December 2011). "The oldest Ordovician foraminifers (Oepikodus evae conodont Zone, Floian) from South America" (PDF). Geobios. 44 (6): 601–608. Bibcode:2011Geobi..44..601N. doi:10.1016/j.geobios.2011.02.007. hdl:11336/139154. Archived from the original (PDF) on 29 March 2024.

cshlp.org

symposium.cshlp.org

Lwoff A, Van Niel CB, Ryan TF, Tatum EL (1946). "Nomenclature of nutritional types of microorganisms" (PDF). Cold Spring Harbor Symposia on Quantitative Biology. 11 (5th ed.): 302–3.

doi.org

Strassert, Jürgen F. H.; Irisarri, Iker; Williams, Tom A.; Burki, Fabien (25 March 2021). "A molecular timescale for eukaryote evolution with implications for the origin of red algal-derived plastids". Nature Communications. 12 (1): 1879. Bibcode:2021NatCo..12.1879S. doi:10.1038/s41467-021-22044-z. PMC 7994803. PMID 33767194.
Adl, Sina M.; Bass, David; Lane, Christopher E.; Lukeš, Julius; Schoch, Conrad L.; Smirnov, Alexey; et al. (2019). "Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes". Journal of Eukaryotic Microbiology. 66 (1): 4–119. doi:10.1111/JEU.12691. PMC 6492006. PMID 30257078.
Tikhonenkov DV, Mikhailov KV, Gawryluk RMR, et al. (2022). "Microbial predators form a new supergroup of eukaryotes". Nature. 612 (7941): 714–719. Bibcode:2022Natur.612..714T. doi:10.1038/s41586-022-05511-5. PMID 36477531. S2CID 254436650.
Simonite T (November 2005). "Protists push animals aside in rule revamp". Nature. 438 (7064): 8–9. Bibcode:2005Natur.438....8S. doi:10.1038/438008b. PMID 16267517.
Levine ND, Corliss JO, Cox FEG, Deroux G, Grain J, Honigberg BM, et al. (1980). "A newly revised classification of the Protozoa". Journal of Protozoology. 27 (1): 37–58. doi:10.1111/j.1550-7408.1980.tb04228.x. PMID 6989987.
Weiss, Louis M. (2001). "Microsporidia: emerging pathogenic protists". Acta Tropica. 78 (2): 89–102. doi:10.1016/S0001-706X(00)00178-9. PMID 11230819."
Karpov, Sergey A.; Mamkaeva, Maria A.; Aleoshin, Vladimir V.; Nassonova, Elena; Lilje, Osu; Gleason, Frank H. (2014). "Morphology, phylogeny, and ecology of the aphelids (Aphelidea, Opisthokonta) and proposal for the new superphylum Opisthosporidia". Frontiers in Microbiology. 5: 112. doi:10.3389/fmicb.2014.00112. PMC 3975115. PMID 24734027.
Cavalier-Smith T (May 2022). "Ciliary transition zone evolution and the root of the eukaryote tree: implications for opisthokont origin and classification of kingdoms Protozoa, Plantae, and Fungi". Protoplasma. 259 (3): 487–593. Bibcode:2022Prpls.259..487C. doi:10.1007/s00709-021-01665-7. PMC 9010356. PMID 34940909.
Cavalier-Smith T (August 1998). "A revised six-kingdom system of life". Biological Reviews of the Cambridge Philosophical Society. 73 (3): 203–266. doi:10.1111/j.1469-185X.1998.tb00030.x. PMID 9809012.
Tedersoo, Leho; Sánchez-Ramírez, Santiago; Kõljalg, Urmas; Bahram, Mohammad; Döring, Markus; Schigel, Dmitry; May, Tom; Ryberg, Martin; Abarenkov, Kessy (2018), "High-level classification of the Fungi and a tool for evolutionary ecological analyses", Fungal Diversity, 90: 135–159, doi:10.1007/s13225-018-0401-0, hdl:10138/238983, S2CID 21714270
Wijayawardene, N.N.; Hyde, K.D.; Dai, D.Q.; Sánchez-García, M.; Goto, B.T.; Saxena, R.K.; et al. (2022). "Outline of Fungi and fungus-like taxa – 2021". Mycosphere. 13 (1): 53–453. doi:10.5943/mycosphere/13/1/2. hdl:10481/76378. S2CID 249054641.
O'Malley MA, Simpson AG, Roger AJ (2012). "The other eukaryotes in light of evolutionary protistology". Biology & Philosophy. 28 (2): 299–330. doi:10.1007/s10539-012-9354-y. S2CID 85406712.
Sebé-Pedrós, Arnau; Degnan, Bernard M.; Ruiz-Trillo, Iñaki (8 May 2017). "The origin of Metazoa: a unicellular perspective". Nature Reviews Genetics. 18 (8): 498–512. doi:10.1038/nrg.2017.21. PMID 28479598.
Corliss, J.O. (1995). "The ambiregnal protists and the codes of nomenclature: a brief review of the problem and of proposed solutions". Bulletin of Zoological Nomenclature. 52: 11–17. doi:10.5962/bhl.part.6717.
Simpson, Alastair G. B.; Slamovits, Claudio H.; Archibald, John M. (2017). "Protist Diversity and Eukaryote Phylogeny". In Archibald, John M.; Simpson, Alastair G.B.; Slamovits, Claudio H. (eds.). Handbook of the Protists. Vol. 1 (2nd ed.). Springer. pp. 1–22. doi:10.1007/978-3-319-28149-0_45. ISBN 978-3-319-28147-6.
De Bruyn, P. P. H. (March 1947). "Theories of amoeboid movement". The Quarterly Review of Biology. 22 (1). The University of Chicago Press: 1–24. doi:10.1086/395577. JSTOR 2813332. PMID 20287832.
Brown MW, Kolisko M, Silberman JD, Roger AJ (2012). "Aggregative Multicellularity Evolved Independently in the Eukaryotic Supergroup Rhizaria". Current Biology. 22 (12): 1123–1127. Bibcode:2012CBio...22.1123B. doi:10.1016/j.cub.2012.04.021. PMID 22608512. S2CID 17510471.
Pawlowski, Jan; Burki, Fabien (2009). "Untangling the Phylogeny of Amoeboid Protists". The Journal of Eukaryotic Microbiology. 56 (1): 16–25. doi:10.1111/j.1550-7408.2008.00379.x. PMID 19335771.
Matz, Mikhail V.; Frank, Tamara M.; Marshall, N. Justin; Widder, Edith A.; Johnsen, Sönke (2008). "Giant deep-sea protist produces bilaterian-like traces". Current Biology. 18 (23): 1849–1854. Bibcode:2008CBio...18.1849M. doi:10.1016/j.cub.2008.10.028. PMID 19026540.
Levin, Lisa A.; Rouse, Greg W. (2019). "Giant protists (xenophyophores) function as fish nurseries". Ecology. 101 (4): e02933. doi:10.1002/ecy.2933. PMC 7341444. PMID 31742677.
"Lynn Margulis replies". BioScience. 36 (5): 293–294. 1986. doi:10.1093/bioscience/36.5.293-a.
Margulis, Lynn (1980). "Undulipodia, flagella and cilia". Biosystems. 12 (1–2): 105–108. Bibcode:1980BiSys..12..105M. doi:10.1016/0303-2647(80)90041-6. PMID 7378551.
Andersen, R. A.; Barr, D. J. S.; Lynn, D. H.; Melkonian, M.; Moestrup, Ø.; Sleigh, M. A. (1991). "Terminology and nomenclature of the cytoskeletal elements associated with the flagellar/ciliary apparatus in protists". Protoplasma. 164 (1–3): 1–8. Bibcode:1991Prpls.164....1A. doi:10.1007/BF01320809.
Thibaut Brunet; Marvin Albert; William Roman; Maxwell C Coyle; Danielle C Spitzer; Nicole King (15 January 2021). "A flagellate-to-amoeboid switch in the closest living relatives of animals". eLife. 10. doi:10.7554/ELIFE.61037. ISSN 2050-084X. PMC 7895527. PMID 33448265. Wikidata Q105870433.
Eliáš, Marek (2021). "Protist diversity: Novel groups enrich the algal tree of life". Current Biology. 31 (11): R714 – R740. Bibcode:2021CBio...31.R733E. doi:10.1016/j.cub.2021.04.025. PMID 34102125.
Gleason, Frank H.; Lilje, Osu; Lange, Lene (2018). "What has happened to the "aquatic phycomycetes" (sensu Sparrow)? Part II: Shared properties of zoosporic true fungi and fungus-like microorganisms". Fungal Biology Reviews. 32 (2): 52–61. Bibcode:2018FunBR..32...52G. doi:10.1016/j.fbr.2017.09.003.
Neuhauser, Sigrid; Glockling, Sally L.; Leaño, Eduardo M.; Lilje, Osu; Marano, Agostina V.; Gleason, Frank H. (2012). "An introduction to fungus-like microorganisms". In Jones, E. B. Gareth; Pang, Ka-Lai (eds.). Marine fungi. Marine and Freshwater Botany. De Gruyter. pp. 137–152. doi:10.1515/9783110264067.137. ISBN 9783110264067.
Cavalier-Smith, Thomas (1993). "Kingdom Protozoa and its 18 phyla". Microbiological Reviews. 57 (4): 953–994. doi:10.1128/mr.57.4.953-994.1993. PMC 372943. PMID 8302218.
Pawlowski J, Audic S, Adl S, Bass D, Belbahri L, Berney C, Bowser SS, Cepicka I, Decelle J, Dunthorn M, Fiore-Donno AM, Gile GH, Holzmann M, Jahn R, Jirků M, Keeling PJ, Kostka M, Kudryavtsev A, Lara E, Lukeš J, Mann DG, Mitchell EAD, Nitsche F, Romeralo M, Saunders GW, Simpson AGB, Smirnov AV, Spouge JL, Stern JF, Stoeck T, Zimmermann J, Schindel D, de Vargas C (2012). "CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms". PLOS Biology. 10 (11): e1001419. doi:10.1371/journal.pbio.1001419. PMC 3491025. PMID 23139639. S2CID 6330045.
Mora C, Tittensor DP, Adl S, Simpson AGB, Worm B (2011). "How Many Species Are There on Earth and in the Ocean?". PLOS Biology. 9 (8): e1001127. doi:10.1371/journal.pbio.1001127. PMC 3160336. PMID 21886479.
Adl, Sina M.; Leander, Brian S.; Simpson, Alastair G. B.; Archibald, John M.; Anderson, O. Roger; Bass, David; Bowser, Samuel S.; Brugerolle, Guy; Farmer, Mark A.; Karpov, Sergey; Kolisko, Martin; Lane, Christopher E.; Lodge, Deborah J.; Mann, David G.; Meisterfeld, Ralf; Mendoza, Leonel; Moestrup, Øjvind; Mozley-Standridge, Sharon E.; Smirnov, Alexey V.; Spiegel, Frederick (2007). "Diversity, Nomenclature, and Taxonomy of Protists". Systematic Biology. 56 (4): 684–689. doi:10.1080/10635150701494127. PMID 17661235.
Burki, Fabien; Sandin, Miguel M.; Jamy, Mahwash (2021). "Diversity and ecology of protists revealed by metabarcoding". Current Biology. 31 (19): R1267 – R1280. Bibcode:2021CBio...31R1267B. doi:10.1016/j.cub.2021.07.066. PMID 34637739. S2CID 238588753.
Brown MW, et al. (2018), "Phylogenomics Places Orphan Protistan Lineages in a Novel Eukaryotic Super-Group", Genome Biology and Evolution, 10 (2): 427–433, doi:10.1093/gbe/evy014, PMC 5793813, PMID 29360967
Yazaki, Euki; Yabuki, Akinori; Imaizumi, Ayaka; Kume, Keitaro; Hashimoto, Tetsuo; Inagaki, Yuji (2022). "The closest lineage of Archaeplastida is revealed by phylogenomics analyses that include Microheliella maris". Open Biology. 12 (4): 210376. doi:10.1098/rsob.210376. PMC 9006020. PMID 35414259.
Eglit, Yana; Shiratori, Takashi; Jerlström-Hultqvist, Jon; Williamson, Kelsey; Roger, Andrew J.; Ishida, Ken-Ichiro; Simpson, Alastair G.B. (22 January 2024). "Meteora sporadica, a protist with incredible cell architecture, is related to Hemimastigophora". Current Biology. 34 (2): 451–459. Bibcode:2024CBio...34E.451E. doi:10.1016/j.cub.2023.12.032. PMID 38262350.
Simpson, Alastair G. B. (2003). "Cytoskeletal organization, phylogenetic affinities and systematics in the contentious taxon Excavata (Eukaryota)". International Journal of Systematic and Evolutionary Microbiology. 53 (6): 1759–1777. doi:10.1099/ijs.0.02578-0. PMID 14657103.
Suzuki-Tellier, Sei; Kiørboe, Thomas; Simpson, Alastair G. B. (2023). "The function of the feeding groove of 'typical excavate' flagellates". Journal of Eukaryotic Microbiology. 71 (2): e13016. doi:10.1111/jeu.13016. PMID 38108228.
Al Jewari, Caesar; Baldauf, Sandra L. (2023). "An excavate root for the eukaryote tree of life". Science Advances. 9 (17): eade4973. Bibcode:2023SciA....9E4973A. doi:10.1126/sciadv.ade4973. PMC 10146883. PMID 37115919.
Pánek, Tomáš; Simpson, Alastair G. B.; Brown, Matthew W.; Dyer, Betsey Dexter (2017). "Heterolobosea". In Archibald, John M.; Simpson, Alastair G.B.; Slamovits, Claudio H. (eds.). Handbook of the Protists. Vol. 2 (2nd ed.). Springer. pp. 1005–1046. doi:10.1007/978-3-319-28149-0_10. ISBN 978-3-319-28147-6.
Simpson, Alastair G. B. (2017). "Jakobida". In Archibald, John M.; Simpson, Alastair G.B.; Slamovits, Claudio H. (eds.). Handbook of the Protists. Vol. 2 (2nd ed.). Springer. pp. 973–1004. doi:10.1007/978-3-319-28149-0_6. ISBN 978-3-319-28147-6.
Guiry, Michael D. (2024). "How many species of algae are there? A reprise. Four kingdoms, 14 phyla, 63 classes and still growing". Journal of Phycology. 60 (2): 214–228. Bibcode:2024JPcgy..60..214G. doi:10.1111/jpy.13431. PMID 38245909.
Kostygov, Alexei Y.; Karnkowska, Anna; Votýpka, Jan; Tashyreva, Daria; Maciszewski, Kacper; Yurchenko, Vyacheslav; Lukeš, Julius (2021). "Euglenozoa: taxonomy, diversity and ecology, symbioses and viruses". Open Biology. 11 (3): 200407. doi:10.1098/rsob.200407. PMC 8061765. PMID 33715388.
Karnkowska A, Vacek V, Zubáčová Z, Treitli SC, Petrželková R, Eme L, Novák L, Žárský V, Barlow LD, Herman EK, Soukal P, Hroudová M, Doležal P, Stairs CW, Roger AJ, Eliáš M, Dacks JB, Vlček Č, Hampl V (23 May 2016). "A Eukaryote without a Mitochondrial Organelle". Current Biology. 26 (10): 1274–1284. Bibcode:2016CBio...26.1274K. doi:10.1016/j.cub.2016.03.053. PMID 27185558.
Novák, Lukáš V. F.; Treitli, Sebastian C.; Pyrih, Jan; Hałakuc, Paweł; Pipaliya, Shweta V.; Vacek, Vojtěch; Brzoň, Ondřej; Soukal, Petr; Eme, Laura; Dacks, Joel B.; Karnkowska, Anna; Eliáš, Marek; Hampl, Vladimír (2023). "Genomics of Preaxostyla Flagellates Illuminates the Path Towards the Loss of Mitochondria". PLOS Genetics. 19 (12): e1011050. doi:10.1371/journal.pgen.1011050. PMC 10703272. PMID 38060519.
Zhang, Qianqian; Táborský, Petr; Silberman, Jeffrey D.; Pánek, Tomáš; Čepička, Ivan; Simpson, Alastair G.B. (September 2015). "Marine Isolates of Trimastix marina Form a Plesiomorphic Deep-branching Lineage within Preaxostyla, Separate from Other Known Trimastigids (Paratrimastix n. gen.)". Protist. 166 (4): 468–491. doi:10.1016/j.protis.2015.07.003. PMID 26312987.
Eglit, Yana; Williams, Shelby K.; Roger, Andrew J.; Simpson, Alastair G.B. (2024). "Characterization of Skoliomonas gen. nov., a haloalkaliphilic anaerobe related to barthelonids (Metamonada)". Journal of Eukaryotic Microbiology. 71 (6): e13048. doi:10.1111/jeu.13048. PMC 11603281. PMID 39225178.
Heiss AA, Warring SD, Lukacs K, Favate J, Yang A, Gyaltshen Y, Filardi C, Simpson AGB, Kim E (December 2020). "Description of Imasa heleensis, gen. nov., sp. nov. (Imasidae, fam. nov.), a Deep-Branching Marine Malawimonad and Possible Key Taxon in Understanding Early Eukaryotic Evolution". Journal of Eukaryotic Microbiology. 68 (2): e12837. doi:10.1111/jeu.12837. PMID 33274482.
Torruella, Guifré; Galindo, Luis Javier; Moreira, David; López-García, Purificación (6 January 2025). "Phylogenomics of neglected flagellated protists supports a revised eukaryotic tree of life". Current Biology. 35 (1): 198–207.e4. Bibcode:2025CBio...35..198T. doi:10.1016/j.cub.2024.10.075. ISSN 1879-0445. PMID 39642877.
Tikhonenkov, Denis V.; Jamy, Mahwash; Borodina, Anastasia S.; Belyaev, Artem O.; Zagumyonnyi, Dmitry G.; Prokina, Kristina I.; Mylnikov, Alexander P.; Burki, Fabien; Karpov, Sergey A. (2022). "On the origin of TSAR: morphology, diversity and phylogeny of Telonemia". Open Biology. 12 (3). The Royal Society. doi:10.1098/rsob.210325. ISSN 2046-2441. PMC 8924772. PMID 35291881.
Jirsová, Dagmar; Wideman, Jeremy G. (2024). "Integrated overview of stramenopile ecology, taxonomy, and heterotrophic origin". The ISME Journal. 18 (1): wrae150. doi:10.1093/ismejo/wrae150. PMC 11412368. PMID 39077993.
Weston EJ, Eglit Y, Simpson AG (2023). "Kaonashia insperata gen. et sp. nov., a eukaryotrophic flagellate, represents a novel major lineage of heterotrophic stramenopiles". Journal of Eukaryotic Microbiology. 71 (1): e13003. doi:10.1111/jeu.13003. PMID 37803921.
Cho, Anna; Tikhonenkov, Denis V.; Lax, Gordon; Prokina, Kristina I.; Keeling, Patrick J. (2025). "Phylogenomic position of genetically diverse phagotrophic stramenopile flagellates in the sediment-associated MAST-6 lineage and a potentially halotolerant placididean". Molecular Phylogenetics and Evolution. 190: 107964. doi:10.1016/j.ympev.2023.107964. PMID 37951557.
Mann, David G.; Crawford, Richard M.; Round, Frank E. (2017). "Bacillariophyta". In Archibald, John M.; Simpson, Alastair G.B.; Slamovits, Claudio H. (eds.). Handbook of the Protists. Vol. 1 (2nd ed.). Springer. pp. 205–266. doi:10.1007/978-3-319-28149-0_29. ISBN 978-3-319-28147-6.
Kawai, Hiroshi; Henry, Eric C. (2017). "Phaeophyta". In Archibald, John M.; Simpson, Alastair G.B.; Slamovits, Claudio H. (eds.). Handbook of the Protists. Vol. 1 (2nd ed.). Springer. pp. 267–304. doi:10.1007/978-3-319-28149-0_31. ISBN 978-3-319-28147-6.
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